RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13376
(417 letters)
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 68.6 bits (167), Expect = 8e-15
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 100 LDLSMNHIGVIENLDQLVCLEKLDLGYNRIE-QIQGLDTLVNLKVLNLKMNRIETIEGLD 158
L L+ + V+ +L+QL+ + LDL +NR+ L L L+VL N +E ++G+
Sbjct: 3 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62
Query: 159 HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQ 216
+L +L+ + NR+Q A++ L L LN++ N +C +E + M+P +
Sbjct: 63 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120
Score = 38.2 bits (88), Expect = 3e-04
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 26/108 (24%)
Query: 76 KAVNLRIKTLRKIENLWMMENLVELDLSMNHI-GVIENLDQLVCL--------------- 119
+ ++L K L + +L + + LDLS N + + L L CL
Sbjct: 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60
Query: 120 -------EKLDLGYNRIEQI---QGLDTLVNLKVLNLKMNRIETIEGL 157
++L L NR++Q Q L + L +LNL+ N + EG+
Sbjct: 61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108
Score = 32.8 bits (74), Expect = 0.027
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 88 IENLWMMENLVELDLSMNHI---GVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
++ + + L EL L N + I+ L L L+L N + Q +G+ + +
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117
Query: 145 NLK 147
++
Sbjct: 118 SVS 120
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 66.6 bits (161), Expect = 1e-12
Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 5/145 (3%)
Query: 54 NLLSLLQESTNLAEKLQIYKLIKAVNLRI--KTLRKIENLWMMENLVELDLSMNHIGVIE 111
NL L + ++ + L K L++ + I L + L L+L+ N + I
Sbjct: 242 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 301
Query: 112 NLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAAN 171
+ L L L L +N I I + +L L+ L N++ + L +L + + N
Sbjct: 302 PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHN 361
Query: 172 RIQSLASLVYLRRFKHLGRLNIERN 196
+I L L L + +L +
Sbjct: 362 QISDLTPLANL---TRITQLGLNDQ 383
Score = 59.6 bits (143), Expect = 2e-10
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 92 WMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
++NL L L N+I I + L L++L N++ + L L N+ L+ N+I
Sbjct: 304 SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQI 363
Query: 152 ETI---EGLDHLEKLELFNIA 169
+ L + +L L + A
Sbjct: 364 SDLTPLANLTRITQLGLNDQA 384
Score = 56.2 bits (134), Expect = 3e-09
Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 25/149 (16%)
Query: 70 QIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRI 129
I + ++L L+ I L + NL +LDL+ N I + L L L +L LG N+I
Sbjct: 216 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 275
Query: 130 EQIQGLDTLVN----------------------LKVLNLKMNRIETIEGLDHLEKLELFN 167
I L L L L L N I I + L KL+
Sbjct: 276 SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLF 335
Query: 168 IAANRIQSLASLVYLRRFKHLGRLNIERN 196
A N++ ++SL L ++ L+ N
Sbjct: 336 FANNKVSDVSSLANL---TNINWLSAGHN 361
Score = 54.2 bits (129), Expect = 1e-08
Identities = 16/71 (22%), Positives = 30/71 (42%)
Query: 94 MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET 153
+ ++ L ++ + L + L I+ I G++ L NL +N N++
Sbjct: 21 LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD 80
Query: 154 IEGLDHLEKLE 164
I L +L KL
Sbjct: 81 ITPLKNLTKLV 91
Score = 50.8 bits (120), Expect = 1e-07
Identities = 31/104 (29%), Positives = 48/104 (46%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
+ I L ++ NL EL L+ N + I L L L LDL N+I + L L L L
Sbjct: 209 ISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 268
Query: 145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
L N+I I L L L + N+++ ++ + L+ +L
Sbjct: 269 KLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 312
Score = 50.0 bits (118), Expect = 2e-07
Identities = 17/82 (20%), Positives = 31/82 (37%)
Query: 107 IGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELF 166
I I L K LG + L + L I++I+G+++L L
Sbjct: 12 INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQI 71
Query: 167 NIAANRIQSLASLVYLRRFKHL 188
N + N++ + L L + +
Sbjct: 72 NFSNNQLTDITPLKNLTKLVDI 93
Score = 47.3 bits (111), Expect = 2e-06
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 92 WMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
+ NL L + N I I L L L++L L N+++ I L +L NL L+L N+I
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 253
Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAM 211
+ L L KL + AN+I +++ L L + +E N ++ +
Sbjct: 254 SNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN-----LELNENQLEDISPISNLKN 308
Query: 212 VPQLQCYNNHI 222
+ L Y N+I
Sbjct: 309 LTYLTLYFNNI 319
Score = 45.4 bits (106), Expect = 9e-06
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 63 TNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKL 122
T LAEK+ L + + ++ + L I I+ ++ L L ++
Sbjct: 19 TALAEKM-------KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQI 71
Query: 123 DLGYNRIEQIQGLDTLVNLKVLN 145
+ N++ I L L L +
Sbjct: 72 NFSNNQLTDITPLKNLTKLVDIL 94
Score = 41.9 bits (97), Expect = 9e-05
Identities = 29/85 (34%), Positives = 41/85 (48%)
Query: 104 MNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKL 163
N + I L +L LE L N+I I L L NL L+L N+++ I L L L
Sbjct: 184 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 243
Query: 164 ELFNIAANRIQSLASLVYLRRFKHL 188
++A N+I +LA L L + L
Sbjct: 244 TDLDLANNQISNLAPLSGLTKLTEL 268
Score = 31.9 bits (71), Expect = 0.14
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 129 IEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
I QI L L + L+++ I+S+ + YL +L
Sbjct: 12 INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYL---NNL 68
Query: 189 GRLNIERN 196
++N N
Sbjct: 69 TQINFSNN 76
Score = 26.5 bits (57), Expect = 6.8
Identities = 24/97 (24%), Positives = 43/97 (44%)
Query: 92 WMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
++ N + ++ L L LE+LD+ N++ I L L NL+ L N+I
Sbjct: 150 LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI 209
Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
I L L L+ ++ N+++ + +L L L
Sbjct: 210 SDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 246
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 62.6 bits (151), Expect = 2e-12
Identities = 47/157 (29%), Positives = 66/157 (42%), Gaps = 3/157 (1%)
Query: 78 VNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLD-QLVCLEKLDLGYNRIEQIQGLD 136
V L + + + ELDL I VIENL L + +D N I ++ G
Sbjct: 1 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 60
Query: 137 TLVNLKVLNLKMNRIETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
L LK L + NRI I L L + N + L L L K L L I
Sbjct: 61 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 120
Query: 195 RNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTA 231
RNPV +K++ + I VPQ++ + + ER+ A
Sbjct: 121 RNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEA 157
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 54.4 bits (129), Expect = 8e-09
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 90 NLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMN 149
+ +L EL++S N + + L LE+L +N + ++ L NLK L+++ N
Sbjct: 279 LCDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPEL--PQNLKQLHVEYN 334
Query: 150 RIETI-EGLDHLEKLELFN 167
+ + + +E L + +
Sbjct: 335 PLREFPDIPESVEDLRMNS 353
Score = 47.1 bits (110), Expect = 2e-06
Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 92 WMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
L+ + + D LE+L++ N++ ++ L L+ L N +
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHL 316
Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLN 192
+ L + L+ ++ N ++ + + L R+N
Sbjct: 317 AEVPEL--PQNLKQLHVEYNPLREFPDI--PESVEDL-RMN 352
Score = 42.1 bits (97), Expect = 7e-05
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 81 RIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVN 140
R + ++ + + EL+L+ + + + LE L N + ++ L +
Sbjct: 25 REMAVSRLRD-CLDRQAHELELNNLGLSSLP--ELPPHLESLVASCNSLTELPEL--PQS 79
Query: 141 LKVLNLKMNRIETIEGLDHLEKLELFN 167
LK L + N ++ + L L + +
Sbjct: 80 LKSLLVDNNNLKALSDLPPLLEYLGVS 106
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 46.5 bits (109), Expect = 1e-06
Identities = 14/74 (18%), Positives = 35/74 (47%)
Query: 87 KIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNL 146
+I + ++ +L + ++L ++++ + I+ +QG+ L N+ L L
Sbjct: 16 QIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFL 75
Query: 147 KMNRIETIEGLDHL 160
N++ I+ L +L
Sbjct: 76 NGNKLTDIKPLANL 89
Score = 42.3 bits (98), Expect = 3e-05
Identities = 12/81 (14%), Positives = 32/81 (39%)
Query: 107 IGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELF 166
I I + D K +L + + L ++ + + I++++G+ +L +
Sbjct: 14 IKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKL 73
Query: 167 NIAANRIQSLASLVYLRRFKH 187
+ N++ + L L+
Sbjct: 74 FLNGNKLTDIKPLANLKNLGW 94
Score = 41.5 bits (96), Expect = 7e-05
Identities = 20/55 (36%), Positives = 24/55 (43%)
Query: 92 WMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNL 146
+ L L L N I I L L L+ L L N I ++ L L NL VL L
Sbjct: 153 SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207
Score = 40.0 bits (92), Expect = 2e-04
Identities = 26/81 (32%), Positives = 36/81 (44%)
Query: 88 IENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLK 147
I L + L L L N I I L +L L+ L L N+I I L L L+ L L
Sbjct: 127 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 186
Query: 148 MNRIETIEGLDHLEKLELFNI 168
N I + L L+ L++ +
Sbjct: 187 KNHISDLRALAGLKNLDVLEL 207
Score = 37.3 bits (85), Expect = 0.002
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDL 124
+ I L + L L LS NHI + L L L+ L+L
Sbjct: 168 ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207
Score = 34.6 bits (78), Expect = 0.014
Identities = 12/60 (20%), Positives = 29/60 (48%)
Query: 79 NLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTL 138
NL+ K++ + ++ ++ + + I ++ + L + KL L N++ I+ L L
Sbjct: 30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANL 89
Score = 31.5 bits (70), Expect = 0.12
Identities = 34/97 (35%), Positives = 45/97 (46%)
Query: 92 WMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
++ L L L N I I L L LE L LG N+I I L L L L+L+ N+I
Sbjct: 109 KDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI 168
Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
I L L KL+ ++ N I L +L L+ L
Sbjct: 169 SDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVL 205
Score = 31.5 bits (70), Expect = 0.13
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 3/93 (3%)
Query: 129 IEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
I+QI D NLK + + L ++ + I+S+ + YL ++
Sbjct: 14 IKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL---PNV 70
Query: 189 GRLNIERNPVCDKENVDGFAIAMVPQLQCYNNH 221
+L + N + D + + L
Sbjct: 71 TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK 103
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 46.2 bits (108), Expect = 2e-06
Identities = 16/58 (27%), Positives = 23/58 (39%)
Query: 89 ENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNL 146
L + L L N I I L L L ++ L N+I + L NL ++ L
Sbjct: 167 TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL 224
Score = 45.0 bits (105), Expect = 6e-06
Identities = 16/68 (23%), Positives = 26/68 (38%)
Query: 107 IGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELF 166
I VI L K+ G + + L + L+ + TIEG+ +L L
Sbjct: 9 INVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGL 68
Query: 167 NIAANRIQ 174
+ N+I
Sbjct: 69 ELKDNQIT 76
Score = 44.3 bits (103), Expect = 1e-05
Identities = 22/84 (26%), Positives = 36/84 (42%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
+ I L + NL L + + + L L L L N+I I L +L NL +
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEV 200
Query: 145 NLKMNRIETIEGLDHLEKLELFNI 168
+LK N+I + L + L + +
Sbjct: 201 HLKNNQISDVSPLANTSNLFIVTL 224
Score = 43.5 bits (101), Expect = 2e-05
Identities = 16/69 (23%), Positives = 30/69 (43%)
Query: 94 MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET 153
+ N +++ +++ L + L + I+G+ L NL L LK N+I
Sbjct: 18 LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD 77
Query: 154 IEGLDHLEK 162
+ L +L K
Sbjct: 78 LAPLKNLTK 86
Score = 38.5 bits (88), Expect = 7e-04
Identities = 26/99 (26%), Positives = 40/99 (40%)
Query: 90 NLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMN 149
L + NL L L +N I I L L L+ L +G ++ + L L L L N
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183
Query: 150 RIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
+I I L L L ++ N+I ++ L +
Sbjct: 184 KISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222
Score = 33.9 bits (76), Expect = 0.023
Identities = 12/93 (12%), Positives = 28/93 (30%), Gaps = 3/93 (3%)
Query: 129 IEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
I I L N + + + L+ + + + ++ + YL +L
Sbjct: 9 INVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYL---NNL 65
Query: 189 GRLNIERNPVCDKENVDGFAIAMVPQLQCYNNH 221
L ++ N + D + +L
Sbjct: 66 IGLELKDNQITDLAPLKNLTKITELELSGNPLK 98
Score = 26.9 bits (58), Expect = 4.6
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 53 ENLLSLLQESTNLAEKLQIYKL--IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI 110
N + + +N+ + + L I ++ + IE + + NL+ L+L N I +
Sbjct: 19 ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL 78
Query: 111 ENLDQLVC 118
L L
Sbjct: 79 APLKNLTK 86
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 44.3 bits (103), Expect = 7e-06
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 101 DLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHL 160
D +N I L + + K LG + L + L I++I+G+++L
Sbjct: 5 DTPINQIFTDTALAEKM---KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYL 61
Query: 161 EKLELFNIAANRIQ 174
L N + N++
Sbjct: 62 NNLTQINFSNNQLT 75
Score = 43.5 bits (101), Expect = 1e-05
Identities = 13/66 (19%), Positives = 27/66 (40%)
Query: 94 MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET 153
+ ++ L ++ + L + L I+ I G++ L NL +N N++
Sbjct: 17 LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD 76
Query: 154 IEGLDH 159
I L +
Sbjct: 77 ITPLKN 82
Score = 40.0 bits (92), Expect = 2e-04
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 92 WMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
+ NL L+LS N I I L L L++L+ N++ ++ L L L+ L++ N++
Sbjct: 125 KNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKV 184
Query: 152 ETIEGLDHLEKLE 164
I L L LE
Sbjct: 185 SDISVLAKLTNLE 197
Score = 38.1 bits (87), Expect = 0.001
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
+ I L + +L +L+ S N + ++ L L LE+LD+ N++ I L L NL+ L
Sbjct: 140 ISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 199
Score = 31.9 bits (71), Expect = 0.10
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 63 TNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKL 122
T LAEK++ L + + ++ + L I I+ ++ L L ++
Sbjct: 15 TALAEKMKT-------VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQI 67
Query: 123 DLGYNRIEQIQGL 135
+ N++ I L
Sbjct: 68 NFSNNQLTDITPL 80
Score = 31.6 bits (70), Expect = 0.13
Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 46/182 (25%)
Query: 53 ENLLSLLQESTNLAEKLQIYKL--IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI 110
+ + TN+ + + L + + ++ I+ + + NL +++ S N + I
Sbjct: 18 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 77
Query: 111 ENLDQLVC--------------------------------------------LEKLDLGY 126
L L L +L+L
Sbjct: 78 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 137
Query: 127 NRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFK 186
N I I L L +L+ LN N++ ++ L +L LE +I++N++ ++ L L +
Sbjct: 138 NTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE 197
Query: 187 HL 188
L
Sbjct: 198 SL 199
Score = 30.8 bits (68), Expect = 0.20
Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 6/99 (6%)
Query: 123 DLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYL 182
D N+I L + + + + LD + L+ I+S+ + YL
Sbjct: 5 DTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADR---LGIKSIDGVEYL 61
Query: 183 RRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNH 221
+L ++N N + D + + +
Sbjct: 62 ---NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA 97
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 43.1 bits (100), Expect = 2e-05
Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 35/170 (20%)
Query: 96 NLVELDLSMNHIGVIENLD----QLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
+++L I IE +D L + L L N IE+I L + NL++L+L N I
Sbjct: 24 EAEKVELHGM-IPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLI 82
Query: 152 ETIEGLDHLEKL-----------------------ELFNIAANRIQSLASLVYLRRFKHL 188
+ IE LD + + ++ N+I + + L L
Sbjct: 83 KKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL 142
Query: 189 GRLNIERNPVCDK-------ENVDGFAIAMVPQLQCYNNHIILEDERRTA 231
L + NP+ + + +P L+ + + DER A
Sbjct: 143 EDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQA 192
Score = 37.4 bits (85), Expect = 0.001
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 107 IGVIENLDQLVCLEKLDLG-YNRIEQIQGLD----TLVNLKVLNLKMNRIETIEGLDHLE 161
I + E +V E + + I I+ +D TL K L L N IE I L +E
Sbjct: 11 IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGME 70
Query: 162 KLE 164
L
Sbjct: 71 NLR 73
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 42.7 bits (98), Expect = 6e-05
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 12/90 (13%)
Query: 96 NLVELDLSMNHI---GVIENLDQLVCLEKLDLGYNRIEQI------QGLDTLVNLKVLNL 146
++ LD+ + E L L + + L + + L L LNL
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 147 KMNRIETIEGLDHLEKLELFNIAANRIQSL 176
+ N + G+ + L+ + +IQ L
Sbjct: 63 RSNEL-GDVGVHCV--LQGLQTPSCKIQKL 89
Score = 41.1 bits (94), Expect = 2e-04
Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 16/92 (17%)
Query: 90 NLWMMENLVELDLSMNHIG------VIENLDQLVCLEKLDLGYNRIEQIQGLDTLV---- 139
L L L+ + + L L +LDL N + G+ LV
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD-AGILQLVESVR 422
Query: 140 ----NLKVLNLKMNRIETIEGLDHLEKLELFN 167
L+ L L + E D L+ LE
Sbjct: 423 QPGCLLEQLVLYDIYW-SEEMEDRLQALEKDK 453
Score = 33.8 bits (75), Expect = 0.041
Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 139 VNLKVLNLKMNRI------ETIEGLDHLEKLELFN--IAANRIQSLASLVYLRRFKHLGR 190
++++ L+++ + E + L + + L + + R + ++S LR L
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA--LRVNPALAE 59
Query: 191 LNIERNPVCDK 201
LN+ N + D
Sbjct: 60 LNLRSNELGDV 70
Score = 32.6 bits (72), Expect = 0.093
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 13/69 (18%)
Query: 89 ENLWMMENLVELDLSMNHIG------VIENLDQLVC-LEKLDLGYNRI--EQIQGLDTLV 139
L +L ELDLS N +G ++E++ Q C LE+L L E L L
Sbjct: 391 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450
Query: 140 ----NLKVL 144
+L+V+
Sbjct: 451 KDKPSLRVI 459
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 41.0 bits (95), Expect = 7e-05
Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 32/154 (20%)
Query: 79 NLRIKTLRKIENLWMMENLVELDLSMNHIGVIENL-DQLVCLEKLDLGYNRIEQIQGLD- 136
L +K LR +L V L+ + + + + + L L+L NR+ ++ +
Sbjct: 26 ALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS 85
Query: 137 ---TLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNI 193
NLK+LNL N +++ LD + L L +
Sbjct: 86 IVQKAPNLKILNLSGNELKSERELDK-----------------------IKGLKLEELWL 122
Query: 194 ERNPVC----DKENVDGFAIAMVPQLQCYNNHII 223
+ N + D+ P+L + H +
Sbjct: 123 DGNSLSDTFRDQSTYISAIRERFPKLLRLDGHEL 156
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 40.8 bits (94), Expect = 2e-04
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLNLKMNRI 151
+ LDL N I I++ L L L L N+I +I LV L+ L L N++
Sbjct: 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91
Query: 152 ETI 154
+ +
Sbjct: 92 KEL 94
Score = 31.9 bits (71), Expect = 0.14
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 92 WMMENLVELDLSMNHIGV-IENLDQLVCLEKLDLGYNRIEQIQG--------LDTLVNLK 142
+L EL L+ N + L ++ + L N I I +
Sbjct: 216 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 275
Query: 143 VLNLKMNRIETIE 155
++L N ++ E
Sbjct: 276 GVSLFSNPVQYWE 288
Score = 31.2 bits (69), Expect = 0.22
Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 10/117 (8%)
Query: 92 WMMENLVELDLSMNHI-----GVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNL 146
+ +L EL L N I ++ L+ L L + ++ +T ++
Sbjct: 168 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 227
Query: 147 KMNRIETIEGLDHLEKLELFNIAANRIQSLAS-----LVYLRRFKHLGRLNIERNPV 198
++ GL + +++ + N I ++ S Y + +++ NPV
Sbjct: 228 NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284
Score = 30.4 bits (67), Expect = 0.39
Identities = 16/85 (18%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 140 NLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
+ +L+L+ N+I I+ +L+ L + N+I ++ L RL + +N
Sbjct: 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQ 90
Query: 198 VCDKENVDGFAIAMVPQLQCYNNHI 222
+ + + + +L+ + N I
Sbjct: 91 L---KELPEKMPKTLQELRVHENEI 112
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 38.4 bits (87), Expect = 8e-04
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 92 WMMENLVELDLSMNHIGVI--ENLDQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLNLK 147
+ N++ + + LD+ RI + GL+ L L+ +
Sbjct: 174 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST- 232
Query: 148 MNRIETIEGLD 158
++ + L+
Sbjct: 233 -YNLKKLPTLE 242
Score = 32.6 bits (72), Expect = 0.059
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 91 LWMMENLVELDLSMNHIGVI--ENLDQLVCLEKLDLGYNRIEQIQGLD 136
V LD+S I + L+ L L ++++ L+
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTLE 242
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 38.2 bits (87), Expect = 0.001
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 92 WMMENLVELDLSMNHI-GVI-ENLDQLVCLEKLDLGYNRIE-QIQGLDTLVNLKVLNLKM 148
+ +NL LDL N I G + + L QL L L++ +N + +I L V
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300
Query: 149 NR 150
N+
Sbjct: 301 NK 302
Score = 36.7 bits (83), Expect = 0.004
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 89 ENLWMMENLVELDLSMNHI-GVIENLDQLVCLEKLDLGYNR 128
+ L ++ L L++S N++ G I L + N+
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
Score = 31.6 bits (70), Expect = 0.15
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 123 DLGYNRIEQI--QGLDTLVNLKVLNLKMNRIE-TIEGLDHLEKLELFNIAANR 172
DL NRI QGL L L LN+ N + I +L++ ++ A N+
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 32.4 bits (72), Expect = 0.085
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 96 NLVELDLSMNHIGVI--ENLDQLVCLEKLDLGYNRIEQIQGLDTLVNL 141
+ L LS N + L L +L+L + ++Q TL L
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVL 79
Score = 30.1 bits (66), Expect = 0.47
Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 8/80 (10%)
Query: 114 DQLVCLEKLDLGYNRIEQI-QGLDTLVNLKVLNLKMNRIETIE-----GLDHLEKLELFN 167
++ +++ + + L + +L+L N + T L +L L
Sbjct: 7 SKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 168 IAANRIQSLASLVYLRRFKH 187
++Q +L L
Sbjct: 65 AELTKLQVDGTLPVLGTLDL 84
Score = 29.7 bits (65), Expect = 0.60
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 92 WMMENLVELDLSMNHIGVI--ENLDQLVCLEKLDLGYNRIEQI-QGLDTLVNLKVLNLKM 148
L +L L+ N++ + L+ L L+ L L N + I +G L L
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204
Query: 149 N 149
N
Sbjct: 205 N 205
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 31.0 bits (68), Expect = 0.28
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 101 DLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGL-------DTLVNLKVLNLKMNRI-E 152
+ + + + L+ L L YN IE + + +L L L NR E
Sbjct: 257 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316
Query: 153 TIEGLDHLEKL 163
+ +D + ++
Sbjct: 317 EDDVVDEIREV 327
Score = 30.6 bits (67), Expect = 0.31
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 88 IENLWMMENLVELDLSMNHIGVI------ENLDQLVCLEKLDLGYNRIEQIQG 134
L +++ E+ LS N IG EN+ LE + +++
Sbjct: 24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKD 76
Score = 28.7 bits (62), Expect = 1.5
Identities = 9/88 (10%), Positives = 26/88 (29%), Gaps = 12/88 (13%)
Query: 96 NLVELDLSMNHIG------VIENLDQLVCLEKLDLGYNRIEQI------QGLDTLVNLKV 143
++ L ++ I V L + ++++ L N I + + + +L++
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63
Query: 144 LNLKMNRIETIEGLDHLEKLELFNIAAN 171
++ L
Sbjct: 64 AEFSDIFTGRVKDEIPEALRLLLQALLK 91
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 28.1 bits (61), Expect = 1.7
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 96 NLVELDLSMNHI---GVIENLDQLVCLEKLDLGYNRI--EQIQGLDTLVNLKVLNLKMNR 150
+ +DLS + I + L Q L+ L L R+ + L NL LNL
Sbjct: 47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 106
Query: 151 IETIEGLDH 159
+ L
Sbjct: 107 GFSEFALQT 115
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.366
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,431,484
Number of extensions: 66310
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 78
Length of query: 417
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 329
Effective length of database: 1,199,356
Effective search space: 394588124
Effective search space used: 394588124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)