BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13378
         (272 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2E2Z|A Chain A, Solution Nmr Structure Of Yeast Tim15, Co-Chaperone Of
           Mitochondrial Hsp70
          Length = 100

 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 113 KHKLKLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNNHLIADNLKWFTDLKPGVTN 172
           K K+ +A+TCK C TR+SH +SK +YEKG V++ C  C   HLIAD+LK F D       
Sbjct: 7   KPKMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHH---VT 63

Query: 173 IEHILAEKGEQ 183
           +E ++   GEQ
Sbjct: 64  VEQLMKANGEQ 74



 Score = 27.7 bits (60), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 222 HLIADNLKWFSDLKPGVTNIEHILAEKGEQVRRIDSNGAIELIEDEKK 269
           HLIAD+LK F D       +E ++   GEQV +   +   E I D  K
Sbjct: 48  HLIADHLKIFHDHH---VTVEQLMKANGEQVSQDVGDLEFEDIPDSLK 92


>pdb|3CQF|A Chain A, Crystal Structure Of Anthrolysin O (Alo)
 pdb|3CQF|B Chain B, Crystal Structure Of Anthrolysin O (Alo)
          Length = 489

 Score = 28.5 bits (62), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 10/55 (18%)

Query: 228 LKWFSDLKPGVTNIEH----ILAEKGEQVRR------IDSNGAIELIEDEKKLLS 272
           +K  SD+  G+ N+++    ILA  G++V        I+SNG   ++E EKK L+
Sbjct: 22  IKNASDINTGIANLKYDSRDILAVNGDKVESFIPKESINSNGKFVVVEREKKSLT 76


>pdb|2D74|B Chain B, Crystal Structure Of Translation Initiation Factor
           Aif2betagamma Heterodimer
 pdb|2DCU|B Chain B, Crystal Structure Of Translation Initiation Factor
           Aif2betagamma Heterodimer With Gdp
          Length = 148

 Score = 27.7 bits (60), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 111 KLKHKLKLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGC 150
           KLK  +K    C VCG+ ++ +I +  +      +KCE C
Sbjct: 96  KLKKYIKEYVICPVCGSPDTKIIKRDRFH----FLKCEAC 131


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,821,217
Number of Sequences: 62578
Number of extensions: 360719
Number of successful extensions: 695
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 691
Number of HSP's gapped (non-prelim): 7
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)