Query psy13378
Match_columns 272
No_of_seqs 219 out of 333
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 17:57:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e2z_A TIM15; protein import, 100.0 2E-36 6.7E-41 242.6 6.6 82 111-199 5-86 (100)
2 2e2z_A TIM15; protein import, 99.8 3.2E-21 1.1E-25 154.7 3.5 82 140-269 9-90 (100)
3 2jr7_A DPH3 homolog; DESR1, CS 91.0 0.093 3.2E-06 41.1 2.0 37 117-156 21-57 (89)
4 1yop_A KTI11P; zinc finger, me 90.9 0.092 3.1E-06 40.6 1.8 36 117-155 21-56 (83)
5 1wge_A Hypothetical protein 26 90.2 0.13 4.3E-06 39.8 2.1 36 117-155 28-63 (83)
6 1twf_I B12.6, DNA-directed RNA 87.5 0.44 1.5E-05 38.1 3.6 35 119-153 72-109 (122)
7 1qyp_A RNA polymerase II; tran 86.2 0.5 1.7E-05 32.9 2.8 35 119-153 15-52 (57)
8 1tfi_A Transcriptional elongat 83.4 0.53 1.8E-05 32.8 1.9 37 87-128 10-46 (50)
9 1tfi_A Transcriptional elongat 83.3 0.69 2.4E-05 32.3 2.5 35 119-153 9-46 (50)
10 2l6l_A DNAJ homolog subfamily 81.9 0.84 2.9E-05 36.9 2.9 35 118-156 111-145 (155)
11 1qyp_A RNA polymerase II; tran 78.6 1.4 4.9E-05 30.5 2.8 38 86-128 15-52 (57)
12 3po3_S Transcription elongatio 77.9 0.72 2.5E-05 39.3 1.3 13 116-128 162-174 (178)
13 3h0g_I DNA-directed RNA polyme 77.6 0.72 2.5E-05 36.4 1.1 34 120-153 73-109 (113)
14 1pqv_S STP-alpha, transcriptio 76.4 1.1 3.8E-05 40.9 2.2 35 119-153 268-305 (309)
15 1k81_A EIF-2-beta, probable tr 76.2 1.5 5.1E-05 28.7 2.1 32 121-156 2-33 (36)
16 3po3_S Transcription elongatio 75.6 0.7 2.4E-05 39.4 0.6 36 119-154 137-175 (178)
17 1pqv_S STP-alpha, transcriptio 73.6 1.4 4.9E-05 40.2 2.1 41 86-133 268-308 (309)
18 1gh9_A 8.3 kDa protein (gene M 72.7 3.6 0.00012 30.8 3.8 41 116-166 1-41 (71)
19 1twf_L ABC10-alpha, DNA-direct 68.9 0.91 3.1E-05 33.9 -0.2 31 117-155 26-56 (70)
20 3h0g_I DNA-directed RNA polyme 67.2 2.2 7.4E-05 33.7 1.6 37 87-128 73-109 (113)
21 2qkd_A Zinc finger protein ZPR 65.9 6.8 0.00023 37.6 5.0 57 82-144 216-275 (404)
22 1wii_A Hypothetical UPF0222 pr 64.1 4.2 0.00014 31.4 2.6 14 82-95 19-32 (85)
23 1zso_A Hypothetical protein; s 61.5 6.4 0.00022 33.4 3.6 71 81-152 32-114 (164)
24 1twf_I B12.6, DNA-directed RNA 61.4 3.7 0.00013 32.8 2.0 38 86-128 72-109 (122)
25 1gh9_A 8.3 kDa protein (gene M 59.4 4.9 0.00017 30.0 2.2 33 84-135 2-34 (71)
26 3qt1_I DNA-directed RNA polyme 59.2 2 6.7E-05 35.3 0.0 35 119-153 92-129 (133)
27 1ltl_A DNA replication initiat 56.6 1.3 4.6E-05 39.2 -1.5 52 111-165 125-178 (279)
28 2kdx_A HYPA, hydrogenase/ureas 55.5 4.3 0.00015 31.7 1.4 35 83-134 70-105 (119)
29 2cot_A Zinc finger protein 435 55.2 11 0.00039 25.2 3.4 12 86-97 18-29 (77)
30 2fiy_A Protein FDHE homolog; F 54.1 11 0.00038 34.6 4.1 38 120-159 223-268 (309)
31 1wii_A Hypothetical UPF0222 pr 51.6 5.2 0.00018 30.8 1.3 41 115-156 19-59 (85)
32 3h0g_L DNA-directed RNA polyme 48.5 7.9 0.00027 28.5 1.8 30 84-129 19-48 (63)
33 3a43_A HYPD, hydrogenase nicke 48.5 5.1 0.00017 32.6 0.8 52 83-134 67-122 (139)
34 1vq8_Z 50S ribosomal protein L 47.1 3.4 0.00012 31.6 -0.4 36 111-153 19-54 (83)
35 3qt1_I DNA-directed RNA polyme 46.6 4.1 0.00014 33.4 0.0 38 86-128 92-129 (133)
36 1vq8_Z 50S ribosomal protein L 41.9 12 0.00042 28.5 2.0 42 79-139 20-61 (83)
37 1vd4_A Transcription initiatio 41.7 9.1 0.00031 25.3 1.1 10 87-96 15-24 (62)
38 1ltl_A DNA replication initiat 40.0 20 0.00068 31.6 3.3 36 83-129 131-166 (279)
39 2qkd_A Zinc finger protein ZPR 39.9 14 0.00047 35.5 2.4 55 84-144 10-67 (404)
40 2dmd_A Zinc finger protein 64, 38.4 16 0.00054 25.1 2.0 60 87-154 9-74 (96)
41 3cc2_Z 50S ribosomal protein L 37.8 14 0.00049 30.2 1.9 36 111-153 52-87 (116)
42 1lko_A Rubrerythrin all-iron(I 37.6 17 0.00058 30.6 2.4 28 84-128 153-180 (191)
43 2lt7_A Transcriptional regulat 37.6 5.5 0.00019 31.0 -0.6 62 85-154 21-88 (133)
44 1nee_A EIF-2-beta, probable tr 36.7 8.3 0.00029 31.9 0.4 33 120-156 103-135 (138)
45 2k3r_A Ribonuclease P protein 35.2 20 0.0007 28.7 2.4 37 88-128 62-98 (123)
46 2d74_B Translation initiation 34.9 8.3 0.00028 32.4 0.1 33 120-156 105-137 (148)
47 2dlq_A GLI-kruppel family memb 34.3 7 0.00024 28.0 -0.4 36 119-154 66-104 (124)
48 3cc2_Z 50S ribosomal protein L 33.9 14 0.00046 30.3 1.2 43 78-139 52-94 (116)
49 2ctu_A Zinc finger protein 483 33.4 1.6 5.6E-05 28.5 -3.7 30 86-127 18-47 (73)
50 2b9d_A E7 protein; zinc finger 33.0 10 0.00035 26.7 0.3 39 114-154 3-51 (52)
51 3p2a_A Thioredoxin 2, putative 32.6 34 0.0012 25.6 3.2 11 85-95 4-14 (148)
52 1x0t_A Ribonuclease P protein 32.3 28 0.00095 27.7 2.7 35 88-128 67-103 (120)
53 1ffk_W Ribosomal protein L37AE 31.5 16 0.00056 27.5 1.2 12 82-93 23-34 (73)
54 3j21_i 50S ribosomal protein L 31.4 22 0.00075 27.5 1.9 42 79-139 28-69 (83)
55 2a2p_A Selenoprotein M, SELM p 31.2 30 0.001 28.6 2.9 23 133-155 8-30 (129)
56 1we9_A PHD finger family prote 31.0 20 0.00068 24.8 1.5 24 121-153 8-31 (64)
57 2kwq_A Protein MCM10 homolog; 30.9 18 0.00061 28.3 1.3 55 85-153 14-74 (92)
58 3j20_W 30S ribosomal protein S 30.8 28 0.00095 25.8 2.3 34 114-153 10-43 (63)
59 2g2k_A EIF-5, eukaryotic trans 29.9 25 0.00087 30.1 2.3 40 120-161 97-136 (170)
60 3k7a_M Transcription initiatio 29.6 11 0.00036 34.4 -0.2 13 82-94 17-29 (345)
61 3flo_B DNA polymerase alpha ca 29.4 23 0.00079 30.9 2.0 13 84-96 20-32 (206)
62 3iz5_m 60S ribosomal protein L 29.4 27 0.00091 27.5 2.1 17 80-96 30-46 (92)
63 2vl6_A SSO MCM N-TER, minichro 29.2 14 0.00049 32.1 0.6 55 111-165 132-191 (268)
64 3izc_m 60S ribosomal protein R 29.2 27 0.00091 27.5 2.1 18 79-96 29-46 (92)
65 3jyw_9 60S ribosomal protein L 28.6 24 0.00081 26.6 1.6 43 78-139 18-60 (72)
66 3pwf_A Rubrerythrin; non heme 28.6 29 0.001 29.0 2.4 12 85-96 137-148 (170)
67 4a17_Y RPL37A, 60S ribosomal p 28.2 25 0.00084 28.3 1.7 11 84-94 34-44 (103)
68 2e9h_A EIF-5, eukaryotic trans 27.6 34 0.0012 28.9 2.6 38 120-159 104-141 (157)
69 2ct1_A Transcriptional repress 26.8 18 0.00062 24.2 0.7 11 86-96 15-25 (77)
70 3nrs_A Dihydrofolate:folylpoly 26.2 31 0.0011 31.8 2.3 29 155-189 172-200 (437)
71 3na7_A HP0958; flagellar bioge 26.1 16 0.00054 31.8 0.3 31 121-155 200-233 (256)
72 2yqq_A Zinc finger HIT domain- 26.0 34 0.0012 24.5 2.0 9 120-128 24-32 (56)
73 3lqh_A Histone-lysine N-methyl 26.0 24 0.00083 30.1 1.4 11 143-153 20-30 (183)
74 2akl_A PHNA-like protein PA012 25.3 33 0.0011 28.9 2.1 23 88-126 29-51 (138)
75 6rxn_A Rubredoxin; electron tr 24.7 39 0.0013 23.2 2.0 37 85-128 3-39 (46)
76 4a18_A RPL37, ribosomal protei 23.9 26 0.0009 27.8 1.2 32 83-132 13-44 (94)
77 2gag_D Heterotetrameric sarcos 23.8 18 0.00062 28.8 0.2 17 118-134 2-18 (99)
78 2vpb_A Hpygo1, pygopus homolog 23.6 29 0.001 24.8 1.3 26 119-153 8-34 (65)
79 1qxf_A GR2, 30S ribosomal prot 23.5 35 0.0012 25.5 1.7 32 116-153 4-35 (66)
80 1yuz_A Nigerythrin; rubrythrin 23.0 33 0.0011 29.3 1.7 26 85-128 170-195 (202)
81 3cw2_K Translation initiation 22.5 8.8 0.0003 31.8 -1.9 33 120-156 104-136 (139)
82 2em9_A Zinc finger protein 224 22.2 17 0.0006 21.7 -0.1 9 87-95 13-21 (46)
83 2vl6_A SSO MCM N-TER, minichro 22.1 55 0.0019 28.4 3.0 39 83-129 138-178 (268)
84 2xst_A Lipocalin 15; transport 21.7 99 0.0034 23.3 4.1 38 4-41 80-129 (161)
85 1wee_A PHD finger family prote 21.7 39 0.0013 24.0 1.7 25 119-153 16-40 (72)
86 1w7p_D VPS36P, YLR417W; ESCRT- 20.9 21 0.0007 35.7 0.0 17 80-96 111-127 (566)
87 1vq8_1 50S ribosomal protein L 20.6 44 0.0015 24.3 1.7 30 84-131 15-45 (57)
88 3j21_e 50S ribosomal protein L 20.5 53 0.0018 24.3 2.1 28 85-130 16-44 (62)
89 2jox_A Churchill protein; zinc 20.4 55 0.0019 26.4 2.4 55 81-143 20-77 (106)
90 4bbr_M Transcription initiatio 20.4 36 0.0012 31.1 1.5 48 99-150 1-48 (345)
91 3dzy_D Peroxisome proliferator 20.2 11 0.00037 35.2 -2.0 23 88-126 52-74 (419)
92 1x6h_A Transcriptional repress 20.1 13 0.00043 25.0 -1.2 11 86-96 15-25 (86)
No 1
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-36 Score=242.64 Aligned_cols=82 Identities=41% Similarity=0.748 Sum_probs=77.1
Q ss_pred ccccceEEEEEcCCCCcccccccchhcccceEEEEEcCCCCcceeeeccccccccCCCCCCCHHHHHHHhCCeeeeceee
Q psy13378 111 KLKHKLKLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNNHLIADNLKWFTDLKPGVTNIEHILAEKGEQGCKGLFC 190 (272)
Q Consensus 111 ~~~~~~~L~FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~HLIADnLgwF~d~~~g~~tIEdil~~kGE~V~kg~~~ 190 (272)
..+|+|+|+|||++|++||+|+|||+||++|+||||||||+|+||||||||||.|. ++||||||++|||+|+++
T Consensus 5 ~~~~~~~l~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~HlIaDnLgwF~d~---~~~IEdil~~kGe~V~~~--- 78 (100)
T 2e2z_A 5 VDKPKMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDH---HVTVEQLMKANGEQVSQD--- 78 (100)
T ss_dssp SCCCEEEEEEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCEEESCCSSCSGGGS---CCCHHHHHHHHCCCCSSS---
T ss_pred CCCCcEEEEEEccCCCCcchhhcCHHHhhCCEEEEEcCCCccceEeehhhhhhccC---CCCHHHHHHHcCCEeeec---
Confidence 45799999999999999999999999999999999999999999999999999985 489999999999999986
Q ss_pred eccceeccc
Q psy13378 191 LSHDIKLNT 199 (272)
Q Consensus 191 ~~~die~~~ 199 (272)
.+|++|++
T Consensus 79 -~~d~~~ed 86 (100)
T 2e2z_A 79 -VGDLEFED 86 (100)
T ss_dssp -SCEEEESS
T ss_pred -CCCccHhh
Confidence 48999987
No 2
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=3.2e-21 Score=154.69 Aligned_cols=82 Identities=27% Similarity=0.443 Sum_probs=66.5
Q ss_pred ceEEEEEcCCCCcceeeeccccccccCCCCCCCHHHHHHHhCCeeeeceeeeccceeccccceeEEEEeecchhhhcccc
Q psy13378 140 KGVVIVKCEGCSNNHLIADNLKWFTDLKPGVTNIEHILAEKGEQGCKGLFCLSHDIKLNTNIVRLMIETCLCHLIRETHG 219 (272)
Q Consensus 140 kGvViVqC~gC~n~HLIADnLgwF~d~~~g~~tIEdil~~kGE~V~kg~~~~~~die~~~~~~~~vi~~C~~~~~~~~C~ 219 (272)
+-.+..+|..|..|-. ++|...+ +.+|+ |||+||+ |+
T Consensus 9 ~~~l~FTC~~C~tRs~---------------k~iSk~a------Y~~Gv----------------Viv~C~g------C~ 45 (100)
T 2e2z_A 9 KMMIAFTCKKCNTRSS---------------HTMSKQA------YEKGT----------------VLISCPH------CK 45 (100)
T ss_dssp EEEEEEEETTTTEEEE---------------EEEEHHH------HHTSE----------------EEEECTT------TC
T ss_pred cEEEEEEccCCCCcch---------------hhcCHHH------hhCCE----------------EEEEcCC------Cc
Confidence 4568889999998765 3555543 56666 8999997 99
Q ss_pred cceeeecccCCccCCCCCcCCHHHHHHhcCCcEEEecCCCcEEEeccccc
Q psy13378 220 SHHLIADNLKWFSDLKPGVTNIEHILAEKGEQVRRIDSNGAIELIEDEKK 269 (272)
Q Consensus 220 n~HlIADnLGwF~d~~~g~~nIE~iL~~kGE~V~r~~~~~~lE~~~~~~~ 269 (272)
|+||||||||||+|. ++||||||++|||+|++. .+++||++-.+.
T Consensus 46 n~HlIaDnLgwF~d~---~~~IEdil~~kGe~V~~~--~~d~~~ed~pe~ 90 (100)
T 2e2z_A 46 VRHLIADHLKIFHDH---HVTVEQLMKANGEQVSQD--VGDLEFEDIPDS 90 (100)
T ss_dssp CEEESCCSSCSGGGS---CCCHHHHHHHHCCCCSSS--SCEEEESSCCHH
T ss_pred cceEeehhhhhhccC---CCCHHHHHHHcCCEeeec--CCCccHhhChHH
Confidence 999999999999985 689999999999999874 567888765443
No 3
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=91.01 E-value=0.093 Score=41.15 Aligned_cols=37 Identities=30% Similarity=0.631 Sum_probs=31.6
Q ss_pred EEEEEcCCCCcccccccchhcccceEEEEEcCCCCcceee
Q psy13378 117 KLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNNHLI 156 (272)
Q Consensus 117 ~L~FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~HLI 156 (272)
...|.|+ ||-+ -.|++...+.|.++++|++|.-+=.+
T Consensus 21 ~y~ypCr-CGd~--F~IteedLe~ge~iv~C~sCSL~IkV 57 (89)
T 2jr7_A 21 TYFYPCP-CGDN--FSITKEDLENGEDVATCPSCSLIIKV 57 (89)
T ss_dssp EEEEECT-TSSE--EEEEHHHHHHTCCEEECTTTCCEEEE
T ss_pred EEEEcCC-CCCE--EEECHHHHhCCCEEEECCCCccEEEE
Confidence 3679997 9977 89999999999999999999876443
No 4
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=90.87 E-value=0.092 Score=40.60 Aligned_cols=36 Identities=28% Similarity=0.531 Sum_probs=30.7
Q ss_pred EEEEEcCCCCcccccccchhcccceEEEEEcCCCCccee
Q psy13378 117 KLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNNHL 155 (272)
Q Consensus 117 ~L~FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~HL 155 (272)
...|.|+ ||-+ -.|++...+.|.++++|++|.-+=.
T Consensus 21 ~y~ypCr-CGd~--F~it~edL~~ge~iv~C~sCSL~I~ 56 (83)
T 1yop_A 21 MFTYPCP-CGDR--FQIYLDDMFEGEKVAVCPSCSLMID 56 (83)
T ss_dssp EEEEEET-TTEE--EEEEHHHHHTTCCEEECSSSCCEEE
T ss_pred EEEEeCC-CCCe--EEECHHHHhCCCEEEECCCCccEEE
Confidence 3679997 9944 8999999999999999999997544
No 5
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=90.23 E-value=0.13 Score=39.83 Aligned_cols=36 Identities=31% Similarity=0.628 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcccccccchhcccceEEEEEcCCCCccee
Q psy13378 117 KLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNNHL 155 (272)
Q Consensus 117 ~L~FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~HL 155 (272)
...|.|+ |+-+ -.|++...+.|.++++|++|.-+=.
T Consensus 28 ~y~y~Cr-CGd~--F~it~edL~~ge~iv~C~sCSL~I~ 63 (83)
T 1wge_A 28 TYFYPCP-CGDN--FAITKEDLENGEDVATCPSCSLIIK 63 (83)
T ss_dssp EEEECCS-SSSC--EEEEHHHHHTTCCEEECTTTCCEEE
T ss_pred EEEEeCC-CCCE--EEECHHHHhCCCEEEECCCCceEEE
Confidence 4679997 9977 8999999999999999999987544
No 6
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=87.52 E-value=0.44 Score=38.14 Aligned_cols=35 Identities=20% Similarity=0.445 Sum_probs=28.9
Q ss_pred EEEcCCCCcccccccch---hcccceEEEEEcCCCCcc
Q psy13378 119 AYTCKVCGTRNSHLISK---HSYEKGVVIVKCEGCSNN 153 (272)
Q Consensus 119 ~FTCk~C~tRS~h~ISK---~AY~kGvViVqC~gC~n~ 153 (272)
.++|+.|+++.+..+-. .|-+-.+++.+|..|..+
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~ 109 (122)
T 1twf_I 72 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHI 109 (122)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCE
T ss_pred CCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCE
Confidence 58999999987766654 477889999999999865
No 7
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=86.15 E-value=0.5 Score=32.91 Aligned_cols=35 Identities=23% Similarity=0.543 Sum_probs=17.5
Q ss_pred EEEcCCCCcccccccchh---cccceEEEEEcCCCCcc
Q psy13378 119 AYTCKVCGTRNSHLISKH---SYEKGVVIVKCEGCSNN 153 (272)
Q Consensus 119 ~FTCk~C~tRS~h~ISK~---AY~kGvViVqC~gC~n~ 153 (272)
.++|+.|+++....+..| |-+-.+++.+|..|..+
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHT 52 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCE
Confidence 355666665443333322 33444566666666543
No 8
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=83.41 E-value=0.53 Score=32.84 Aligned_cols=37 Identities=22% Similarity=0.549 Sum_probs=17.1
Q ss_pred eecCCcCCcccccccCCcccccccccccceEEEEEcCCCCcc
Q psy13378 87 YTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGTR 128 (272)
Q Consensus 87 fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~tR 128 (272)
++|+.|+.+.+.-...| +......|.+-|+|..|++|
T Consensus 10 ~~Cp~Cg~~~a~f~q~Q-----~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 10 FTCGKCKKKNCTYTQVQ-----TRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp SCCSSSCSSCEEEEEEC-----SSSSSSCCEEEEEESSSCCE
T ss_pred cCCCCCCCCEEEEEEec-----CcCCCCCceEEEEcCCCCCe
Confidence 45666665543321111 22222334556666666654
No 9
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=83.30 E-value=0.69 Score=32.25 Aligned_cols=35 Identities=26% Similarity=0.563 Sum_probs=28.8
Q ss_pred EEEcCCCCcccccccchh---cccceEEEEEcCCCCcc
Q psy13378 119 AYTCKVCGTRNSHLISKH---SYEKGVVIVKCEGCSNN 153 (272)
Q Consensus 119 ~FTCk~C~tRS~h~ISK~---AY~kGvViVqC~gC~n~ 153 (272)
.++|+.|+++.+..+-.| |-+-.++++.|..|..+
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCe
Confidence 478999999987666544 77888999999999865
No 10
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=81.93 E-value=0.84 Score=36.91 Aligned_cols=35 Identities=26% Similarity=0.601 Sum_probs=28.2
Q ss_pred EEEEcCCCCcccccccchhcccceEEEEEcCCCCcceee
Q psy13378 118 LAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNNHLI 156 (272)
Q Consensus 118 L~FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~HLI 156 (272)
..+.|. |+.+ -.|++.-.+.| ++++|++|..+-.+
T Consensus 111 f~~~Cr-CG~~--f~i~~~~l~~~-~~v~C~sCSl~~~v 145 (155)
T 2l6l_A 111 FYLSCR-CGGK--YSVSKDEAEEV-SLISCDTCSLIIEL 145 (155)
T ss_dssp EEEECS-SSCE--EEEETTHHHHC-CEEECSSSSCEEEE
T ss_pred EEEcCC-CCCe--EEecHHHhCCC-CEEECCCCceEEEE
Confidence 568897 9976 77888877778 88999999976554
No 11
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=78.56 E-value=1.4 Score=30.54 Aligned_cols=38 Identities=21% Similarity=0.464 Sum_probs=23.4
Q ss_pred eeecCCcCCcccccccCCcccccccccccceEEEEEcCCCCcc
Q psy13378 86 AYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGTR 128 (272)
Q Consensus 86 ~fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~tR 128 (272)
..+|+.|+.+...-...| +......+.+-|+|..|+++
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q-----~rsadep~T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQ-----TRAGDEPSTIFYKCTKCGHT 52 (57)
T ss_dssp ECCCTTTCCSEEEEEEEC-----CSSSSCSSEEEEEESSSCCE
T ss_pred EeECCCCCCCEEEEEEee-----cccCCCCCcEEEEcCCCCCE
Confidence 568999997543322222 11122335689999999976
No 12
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=77.91 E-value=0.72 Score=39.30 Aligned_cols=13 Identities=46% Similarity=0.989 Sum_probs=7.1
Q ss_pred eEEEEEcCCCCcc
Q psy13378 116 LKLAYTCKVCGTR 128 (272)
Q Consensus 116 ~~L~FTCk~C~tR 128 (272)
|.+-|+|..|++|
T Consensus 162 mt~f~~C~~C~~~ 174 (178)
T 3po3_S 162 LTTFCTCEACGNR 174 (178)
T ss_dssp CCCCEEETTTCCE
T ss_pred CcEEEEcCCCCCe
Confidence 3345666666654
No 13
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=77.63 E-value=0.72 Score=36.44 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=27.5
Q ss_pred EEcCCCCcccccccchh---cccceEEEEEcCCCCcc
Q psy13378 120 YTCKVCGTRNSHLISKH---SYEKGVVIVKCEGCSNN 153 (272)
Q Consensus 120 FTCk~C~tRS~h~ISK~---AY~kGvViVqC~gC~n~ 153 (272)
++|+.|+++.+..+-.| |-+..+++.+|..|..+
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~ 109 (113)
T 3h0g_I 73 KECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFA 109 (113)
T ss_dssp SCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCC
T ss_pred cCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCE
Confidence 78999998877766544 77888899999999865
No 14
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=76.39 E-value=1.1 Score=40.88 Aligned_cols=35 Identities=23% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEcCCCCcccccccchh---cccceEEEEEcCCCCcc
Q psy13378 119 AYTCKVCGTRNSHLISKH---SYEKGVVIVKCEGCSNN 153 (272)
Q Consensus 119 ~FTCk~C~tRS~h~ISK~---AY~kGvViVqC~gC~n~ 153 (272)
.|+|+.|+++....+--| |=+-.++++.|-.|.++
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~ 305 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNR 305 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCc
Confidence 456666666654443322 44555666666666554
No 15
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=76.18 E-value=1.5 Score=28.73 Aligned_cols=32 Identities=31% Similarity=0.750 Sum_probs=25.2
Q ss_pred EcCCCCcccccccchhcccceEEEEEcCCCCcceee
Q psy13378 121 TCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNNHLI 156 (272)
Q Consensus 121 TCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~HLI 156 (272)
.|+.|+...+.++- ++++.+.+|..|.++.-+
T Consensus 2 lC~~C~~peT~l~~----~~~~~~l~C~aCG~~~~v 33 (36)
T 1k81_A 2 ICRECGKPDTKIIK----EGRVHLLKCMACGAIRPI 33 (36)
T ss_dssp CCSSSCSCEEEEEE----ETTEEEEEEETTTEEEEE
T ss_pred CCcCCCCCCcEEEE----eCCcEEEEhhcCCCcccc
Confidence 58889888777665 468888999999887765
No 16
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=75.60 E-value=0.7 Score=39.38 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=29.4
Q ss_pred EEEcCCCCcccccccchh---cccceEEEEEcCCCCcce
Q psy13378 119 AYTCKVCGTRNSHLISKH---SYEKGVVIVKCEGCSNNH 154 (272)
Q Consensus 119 ~FTCk~C~tRS~h~ISK~---AY~kGvViVqC~gC~n~H 154 (272)
.++|+.|+++....+-.| |-+-.++++.|..|..+.
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w 175 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRW 175 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEE
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCee
Confidence 489999999887666544 677889999999998764
No 17
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=73.65 E-value=1.4 Score=40.16 Aligned_cols=41 Identities=22% Similarity=0.492 Sum_probs=27.7
Q ss_pred eeecCCcCCcccccccCCcccccccccccceEEEEEcCCCCccccccc
Q psy13378 86 AYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGTRNSHLI 133 (272)
Q Consensus 86 ~fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~tRS~h~I 133 (272)
.|+|+.|+.+...-..-| +.....-|.+-|+|..|++| ..|
T Consensus 268 ~~~C~~C~~~~~~~~q~Q-----~rsaDe~~t~f~~C~~Cg~~--w~f 308 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQ-----TRSADEPLTTFCTCEACGNR--WKF 308 (309)
T ss_pred cccCCCCCCCeeEEEEee-----cccCCCCCcEEEEeCCCCCc--eec
Confidence 589999998876532222 22233455688999999987 444
No 18
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=72.74 E-value=3.6 Score=30.79 Aligned_cols=41 Identities=24% Similarity=0.635 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCcccccccchhcccceEEEEEcCCCCcceeeeccccccccC
Q psy13378 116 LKLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNNHLIADNLKWFTDL 166 (272)
Q Consensus 116 ~~L~FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~HLIADnLgwF~d~ 166 (272)
|.++|.|+ |+.. .+++ .|.--.+|| |...|-+ +.+..|.+.
T Consensus 1 mY~vv~C~-C~~~---~~~~----~~~kT~~C~-CG~~~~~-~k~rif~~~ 41 (71)
T 1gh9_A 1 MYIIFRCD-CGRA---LYSR----EGAKTRKCV-CGRTVNV-KDRRIFGRA 41 (71)
T ss_dssp CEEEEEET-TSCC---EEEE----TTCSEEEET-TTEEEEC-CSSSCBSCC
T ss_pred CeEEEECC-CCCE---EEEc----CCCcEEECC-CCCeeee-ceEEEEEec
Confidence 56889999 9854 3333 366678999 9999884 677777754
No 19
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=68.86 E-value=0.91 Score=33.86 Aligned_cols=31 Identities=29% Similarity=0.693 Sum_probs=15.8
Q ss_pred EEEEEcCCCCcccccccchhcccceEEEEEcCCCCccee
Q psy13378 117 KLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNNHL 155 (272)
Q Consensus 117 ~L~FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~HL 155 (272)
.+.|.|..|+... ..+.- . -++||.|..+=|
T Consensus 26 ~v~Y~C~~CG~~~----e~~~~--d--~irCp~CG~RIL 56 (70)
T 1twf_L 26 TLKYICAECSSKL----SLSRT--D--AVRCKDCGHRIL 56 (70)
T ss_dssp CCCEECSSSCCEE----CCCTT--S--TTCCSSSCCCCC
T ss_pred eEEEECCCCCCcc----eeCCC--C--CccCCCCCceEe
Confidence 4567777777442 22211 1 136777766544
No 20
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=67.19 E-value=2.2 Score=33.68 Aligned_cols=37 Identities=22% Similarity=0.502 Sum_probs=25.3
Q ss_pred eecCCcCCcccccccCCcccccccccccceEEEEEcCCCCcc
Q psy13378 87 YTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGTR 128 (272)
Q Consensus 87 fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~tR 128 (272)
++|+.|+.+-+.-...| +......+.+-|+|..|++|
T Consensus 73 ~~Cp~C~~~~a~~~q~q-----~rsade~mt~fy~C~~C~~~ 109 (113)
T 3h0g_I 73 KECPRCHQHEAVFYQTH-----SRRGDTMMTLIYVCVHCGFA 109 (113)
T ss_dssp SCCSSSCCSCEEEECCC-----CSSCCCCCCCEEEESSSCCC
T ss_pred cCCCCCCCceEEEEEEe-----cccCCCCCeeEEEcCCCCCE
Confidence 69999998765533333 22233445678999999987
No 21
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=65.86 E-value=6.8 Score=37.59 Aligned_cols=57 Identities=23% Similarity=0.395 Sum_probs=39.2
Q ss_pred ceeeeeecCCcCCccccc--ccCCcccccccccccceEEEEEcCCCCcccccccchhccc-ceEEE
Q psy13378 82 KLKLAYTCKVCGTRNSHL--ISKHSYEKGVIKLKHKLKLAYTCKVCGTRNSHLISKHSYE-KGVVI 144 (272)
Q Consensus 82 k~~i~fTCkvC~TRSSh~--ISK~Sy~kGv~~~~~~~~L~FTCk~C~tRS~h~ISK~AY~-kGvVi 144 (272)
-+.+.-.|+.|+....-. .-+.+|- +.-+.+.|.|..||.|++-..+--+.. +|+.+
T Consensus 216 v~~~~s~Cp~C~~~~~t~~~~~~IP~F------~eViims~~C~~CGyr~neVk~~g~i~~~G~ri 275 (404)
T 2qkd_A 216 VLQFNTNCPECNAPAQTNMKLVQIPHF------KEVIIMATNCENCGHRTNEVKSGGAVEPLGTRI 275 (404)
T ss_dssp EEEEEECCTTTCCTTCEEEEEECCTTS------CCEEEEEEECSSSCCEEEEEEECSSSCCCEEEE
T ss_pred eeeecccCccCCCccEEEEEEEeCCCC------CcEEEEEEECCCCCCcccceeeccccCCCcEEE
Confidence 366777999999543221 2233443 345789999999999998888776664 56655
No 22
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=64.14 E-value=4.2 Score=31.38 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=7.7
Q ss_pred ceeeeeecCCcCCc
Q psy13378 82 KLKLAYTCKVCGTR 95 (272)
Q Consensus 82 k~~i~fTCkvC~TR 95 (272)
++--.|+|+.|++.
T Consensus 19 ~L~t~F~CPfCnh~ 32 (85)
T 1wii_A 19 TLETQFTCPFCNHE 32 (85)
T ss_dssp CCSSCCCCTTTCCS
T ss_pred CCCCeEcCCCCCCC
Confidence 44455566666554
No 23
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=61.54 E-value=6.4 Score=33.43 Aligned_cols=71 Identities=8% Similarity=0.067 Sum_probs=43.7
Q ss_pred cceeeeeecCCcCCcccccccCCccc-ccccccccceEEEEEcCCCCcccccccchh----ccc-------ceEEEEEcC
Q psy13378 81 HKLKLAYTCKVCGTRNSHLISKHSYE-KGVIKLKHKLKLAYTCKVCGTRNSHLISKH----SYE-------KGVVIVKCE 148 (272)
Q Consensus 81 ~k~~i~fTCkvC~TRSSh~ISK~Sy~-kGv~~~~~~~~L~FTCk~C~tRS~h~ISK~----AY~-------kGvViVqC~ 148 (272)
..+.+..+|..|+.-+.. +.=.... ..+.--|+..-++++|+.|+..++-.|-+. +|. .-++..-|.
T Consensus 32 ~~~~fkvkC~~C~E~~~k-v~v~~~e~~ei~gsRG~aNfv~KCk~C~re~Si~i~~~~~~~~y~~~d~~k~~~i~~FDCR 110 (164)
T 1zso_A 32 YLWIFNIRDSTSSLTRDN-IQFRKTDILEIPNSRGTANFMIKWTEYPKYSTINFVNTKNSCSYEEVNNNEWRDFASFECR 110 (164)
T ss_dssp CCEEEEEEETTSSCEEEE-EEECTTCBEECTTSSCEESEEECCSSSSCCEEEEEECCTTTTEEEGGGTTSCEEEEEEEEE
T ss_pred cEEEEEEEECCCCcccCC-EEEcchheeecCCCCcceeEEEeccccCCcceEEEEeCCCCcccccccCCCceEEEEEECC
Confidence 467888899999987664 3221111 122223455678999999997765544332 443 257778888
Q ss_pred CCCc
Q psy13378 149 GCSN 152 (272)
Q Consensus 149 gC~n 152 (272)
||.-
T Consensus 111 GlEp 114 (164)
T 1zso_A 111 GIEL 114 (164)
T ss_dssp SEEE
T ss_pred Ceee
Confidence 8753
No 24
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=61.44 E-value=3.7 Score=32.75 Aligned_cols=38 Identities=16% Similarity=0.440 Sum_probs=25.3
Q ss_pred eeecCCcCCcccccccCCcccccccccccceEEEEEcCCCCcc
Q psy13378 86 AYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGTR 128 (272)
Q Consensus 86 ~fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~tR 128 (272)
.++|+.|+.+-+.-...| +......+.+-|+|..|++|
T Consensus 72 ~~~Cp~C~~~~a~~~q~q-----~rsade~~t~fy~C~~C~~~ 109 (122)
T 1twf_I 72 DRECPKCHSRENVFFQSQ-----QRRKDTSMVLFFVCLSCSHI 109 (122)
T ss_dssp CCCCTTTCCCCEEEEECS-----SCCTTCCCCEEEEETTTCCE
T ss_pred CCCCCCCCCCEEEEEEec-----CccCCCCceEEEEeCCCCCE
Confidence 469999998765433222 22233345689999999987
No 25
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=59.38 E-value=4.9 Score=30.04 Aligned_cols=33 Identities=21% Similarity=0.608 Sum_probs=22.0
Q ss_pred eeeeecCCcCCcccccccCCcccccccccccceEEEEEcCCCCcccccccch
Q psy13378 84 KLAYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGTRNSHLISK 135 (272)
Q Consensus 84 ~i~fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~tRS~h~ISK 135 (272)
-+.|.|+ |+.-+ +++.+.. +-+|+ ||++ +.+.|
T Consensus 2 Y~vv~C~-C~~~~---~~~~~~k------------T~~C~-CG~~--~~~~k 34 (71)
T 1gh9_A 2 YIIFRCD-CGRAL---YSREGAK------------TRKCV-CGRT--VNVKD 34 (71)
T ss_dssp EEEEEET-TSCCE---EEETTCS------------EEEET-TTEE--EECCS
T ss_pred eEEEECC-CCCEE---EEcCCCc------------EEECC-CCCe--eeece
Confidence 3678999 99664 4454332 67898 9977 55544
No 26
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=59.20 E-value=2 Score=35.31 Aligned_cols=35 Identities=20% Similarity=0.474 Sum_probs=0.0
Q ss_pred EEEcCCCCcccccccchh---cccceEEEEEcCCCCcc
Q psy13378 119 AYTCKVCGTRNSHLISKH---SYEKGVVIVKCEGCSNN 153 (272)
Q Consensus 119 ~FTCk~C~tRS~h~ISK~---AY~kGvViVqC~gC~n~ 153 (272)
.++|+.|+++.+..+-.| |-+-.+++.+|..|..+
T Consensus 92 ~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~ 129 (133)
T 3qt1_I 92 DRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHR 129 (133)
T ss_dssp --------------------------------------
T ss_pred cCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCE
Confidence 589999999887777444 77889999999999865
No 27
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=56.65 E-value=1.3 Score=39.17 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=28.6
Q ss_pred ccccce-EEEEEcCCCCcccccccchhcccceEEEEEcCCCCcceeeec-ccccccc
Q psy13378 111 KLKHKL-KLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNNHLIAD-NLKWFTD 165 (272)
Q Consensus 111 ~~~~~~-~L~FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~HLIAD-nLgwF~d 165 (272)
.+++++ ...|+|..|++...-.+. ..+-+....||+|.++.+.-+ +.--|.|
T Consensus 125 ~V~p~~~~~~f~C~~C~~~~~v~~~---~~~~~~P~~Cp~C~~~~f~l~~~~s~f~D 178 (279)
T 1ltl_A 125 EIRPRIVKAVFECRGCMRHHAVTQS---TNMITEPSLCSECGGRSFRLLQDESEFLD 178 (279)
T ss_dssp CCEEEEEEEEEEETTTCCEEEEECS---SSSCCCCSCCTTTCCCCEEECGGGCEEEE
T ss_pred ceEEEEEEEEEEcCCCCCEEEEEec---CCcccCCCcCCCCCCCCcEEeccccEEEe
Confidence 445443 567999999965322221 111133458999998743333 3344544
No 28
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=55.46 E-value=4.3 Score=31.75 Aligned_cols=35 Identities=23% Similarity=0.526 Sum_probs=22.0
Q ss_pred eeeeeecCCcCCcccccccCCcccccccccccceEEEE-EcCCCCcccccccc
Q psy13378 83 LKLAYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAY-TCKVCGTRNSHLIS 134 (272)
Q Consensus 83 ~~i~fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~F-TCk~C~tRS~h~IS 134 (272)
....|.|+.|+..... +. + .+ +||.|+..+.+.++
T Consensus 70 ~p~~~~C~~CG~~~e~---~~-~-------------~~~~CP~Cgs~~~~i~~ 105 (119)
T 2kdx_A 70 EKVELECKDCSHVFKP---NA-L-------------DYGVCEKCHSKNVIITQ 105 (119)
T ss_dssp ECCEEECSSSSCEECS---CC-S-------------TTCCCSSSSSCCCEEEE
T ss_pred ccceEEcCCCCCEEeC---CC-C-------------CCCcCccccCCCcEEec
Confidence 3457888888866532 11 0 26 78888877666554
No 29
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=55.19 E-value=11 Score=25.19 Aligned_cols=12 Identities=42% Similarity=0.958 Sum_probs=9.2
Q ss_pred eeecCCcCCccc
Q psy13378 86 AYTCKVCGTRNS 97 (272)
Q Consensus 86 ~fTCkvC~TRSS 97 (272)
.|.|.+|+....
T Consensus 18 ~~~C~~C~~~f~ 29 (77)
T 2cot_A 18 RYKCDECGKSFS 29 (77)
T ss_dssp SSBCSSSCCBCS
T ss_pred CEECCCCCcccC
Confidence 489999997653
No 30
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=54.06 E-value=11 Score=34.62 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=26.9
Q ss_pred EEcCCCCcccccccchhccc--------ceEEEEEcCCCCcceeeecc
Q psy13378 120 YTCKVCGTRNSHLISKHSYE--------KGVVIVKCEGCSNNHLIADN 159 (272)
Q Consensus 120 FTCk~C~tRS~h~ISK~AY~--------kGvViVqC~gC~n~HLIADn 159 (272)
..|+.|++. +.++=..++ .++-+-.|..|+....+.|.
T Consensus 223 ~~C~~Cg~~--~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK~~~~ 268 (309)
T 2fiy_A 223 IKCSHCEES--KHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYL 268 (309)
T ss_dssp TSCSSSCCC--SCCEEECCCC-CCCSTTCSEEEEEETTTTEEEEEEET
T ss_pred cCCcCCCCC--CCeeEEEecCccccCCCcceEEEEcccccchHhhhhh
Confidence 467888854 444444333 56889999999999998874
No 31
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=51.60 E-value=5.2 Score=30.84 Aligned_cols=41 Identities=20% Similarity=0.480 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCCcccccccchhcccceEEEEEcCCCCcceee
Q psy13378 115 KLKLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNNHLI 156 (272)
Q Consensus 115 ~~~L~FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~HLI 156 (272)
.+--.|+|+-|++-++=.+ +.--..|+-.+.|..|...+-.
T Consensus 19 ~L~t~F~CPfCnh~~sV~v-kidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 19 TLETQFTCPFCNHEKSCDV-KMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CCSSCCCCTTTCCSSCEEE-EEETTTTEEEEEESSSCCEEEE
T ss_pred CCCCeEcCCCCCCCCeEEE-EEEccCCEEEEEcccCCCeEEe
Confidence 3444799999998842111 2223578999999999987764
No 32
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=48.54 E-value=7.9 Score=28.47 Aligned_cols=30 Identities=33% Similarity=0.774 Sum_probs=19.2
Q ss_pred eeeeecCCcCCcccccccCCcccccccccccceEEEEEcCCCCccc
Q psy13378 84 KLAYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGTRN 129 (272)
Q Consensus 84 ~i~fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~tRS 129 (272)
.+.|.|..|++...-. . +- ...|+.|+.|-
T Consensus 19 ~v~Y~C~~Cg~~~~l~---~----~~---------~iRC~~CG~RI 48 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQ---A----KE---------VIRCRECGHRV 48 (63)
T ss_dssp CCCCBCSSSCCBCCCC---S----SS---------CCCCSSSCCCC
T ss_pred CeEEECCCCCCeeecC---C----CC---------ceECCCCCcEE
Confidence 4678888888776421 1 11 26788888773
No 33
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=48.46 E-value=5.1 Score=32.60 Aligned_cols=52 Identities=12% Similarity=0.356 Sum_probs=25.5
Q ss_pred eeeeeecCCcCCcccccccCCccccccccc----ccceEEEEEcCCCCcccccccc
Q psy13378 83 LKLAYTCKVCGTRNSHLISKHSYEKGVIKL----KHKLKLAYTCKVCGTRNSHLIS 134 (272)
Q Consensus 83 ~~i~fTCkvC~TRSSh~ISK~Sy~kGv~~~----~~~~~L~FTCk~C~tRS~h~IS 134 (272)
....|.|+.||......-.++....-.... ..-+...+.||.|+++..+.++
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~ 122 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVK 122 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEE
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEec
Confidence 345789999997654422212111111100 0000013679999887666544
No 34
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=47.09 E-value=3.4 Score=31.60 Aligned_cols=36 Identities=19% Similarity=0.541 Sum_probs=19.1
Q ss_pred ccccceEEEEEcCCCCcccccccchhcccceEEEEEcCCCCcc
Q psy13378 111 KLKHKLKLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNN 153 (272)
Q Consensus 111 ~~~~~~~L~FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~ 153 (272)
+++-+....|+|+-|+....+ ..++=+-+|+.|...
T Consensus 19 ~ie~~q~~~y~Cp~CG~~~v~-------r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 19 EIESEMNEDHACPNCGEDRVD-------RQGTGIWQCSYCDYK 54 (83)
T ss_dssp HHHHHHHSCEECSSSCCEEEE-------EEETTEEEETTTCCE
T ss_pred HHHHhccccCcCCCCCCccee-------ccCCCeEECCCCCCE
Confidence 344344446777777743222 222336677777754
No 35
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=46.60 E-value=4.1 Score=33.37 Aligned_cols=38 Identities=21% Similarity=0.550 Sum_probs=0.0
Q ss_pred eeecCCcCCcccccccCCcccccccccccceEEEEEcCCCCcc
Q psy13378 86 AYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGTR 128 (272)
Q Consensus 86 ~fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~tR 128 (272)
..+|+.|+.+.+.-...| +......+.+-|+|..|++|
T Consensus 92 ~~~CpkCg~~~a~f~q~Q-----~RsaDE~mT~fy~C~~C~~~ 129 (133)
T 3qt1_I 92 DRECPKCHSRENVFFQLQ-----IRSADEPMTTFYKCVNCGHR 129 (133)
T ss_dssp -------------------------------------------
T ss_pred cCCCCCCCCceEEEEEEe-----eecCCCCCcEEEEcCCCCCE
Confidence 469999998776533322 33334456789999999977
No 36
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=41.94 E-value=12 Score=28.50 Aligned_cols=42 Identities=21% Similarity=0.546 Sum_probs=27.3
Q ss_pred cccceeeeeecCCcCCcccccccCCcccccccccccceEEEEEcCCCCcccccccchhccc
Q psy13378 79 LEHKLKLAYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGTRNSHLISKHSYE 139 (272)
Q Consensus 79 ~~~k~~i~fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~tRS~h~ISK~AY~ 139 (272)
++-.....|+|+.|+...-. ..+++ ...|+.|+ +.|+-.||.
T Consensus 20 ie~~q~~~y~Cp~CG~~~v~-------r~atG--------iW~C~~Cg----~~~aggay~ 61 (83)
T 1vq8_Z 20 IESEMNEDHACPNCGEDRVD-------RQGTG--------IWQCSYCD----YKFTGGSYK 61 (83)
T ss_dssp HHHHHHSCEECSSSCCEEEE-------EEETT--------EEEETTTC----CEEECCSSS
T ss_pred HHHhccccCcCCCCCCccee-------ccCCC--------eEECCCCC----CEecCCEec
Confidence 44445568899999953311 12232 58999999 567777775
No 37
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=41.73 E-value=9.1 Score=25.32 Aligned_cols=10 Identities=30% Similarity=0.986 Sum_probs=6.0
Q ss_pred eecCCcCCcc
Q psy13378 87 YTCKVCGTRN 96 (272)
Q Consensus 87 fTCkvC~TRS 96 (272)
|.|+.|+.+.
T Consensus 15 ~~C~~C~k~F 24 (62)
T 1vd4_A 15 FKCPVCSSTF 24 (62)
T ss_dssp EECSSSCCEE
T ss_pred ccCCCCCchh
Confidence 6666666543
No 38
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=39.97 E-value=20 Score=31.61 Aligned_cols=36 Identities=19% Similarity=0.602 Sum_probs=21.1
Q ss_pred eeeeeecCCcCCcccccccCCcccccccccccceEEEEEcCCCCccc
Q psy13378 83 LKLAYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGTRN 129 (272)
Q Consensus 83 ~~i~fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~tRS 129 (272)
...+|+|..|++... +.... ... ..-..|+.|+.++
T Consensus 131 ~~~~f~C~~C~~~~~--v~~~~--~~~-------~~P~~Cp~C~~~~ 166 (279)
T 1ltl_A 131 VKAVFECRGCMRHHA--VTQST--NMI-------TEPSLCSECGGRS 166 (279)
T ss_dssp EEEEEEETTTCCEEE--EECSS--SSC-------CCCSCCTTTCCCC
T ss_pred EEEEEEcCCCCCEEE--EEecC--Ccc-------cCCCcCCCCCCCC
Confidence 467899999996531 21110 011 1123799999876
No 39
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=39.86 E-value=14 Score=35.51 Aligned_cols=55 Identities=18% Similarity=0.469 Sum_probs=34.5
Q ss_pred eeeeecCCcCCcccccc--cCCcccccccccccceEEEEEcCCCCcccccccchhccc-ceEEE
Q psy13378 84 KLAYTCKVCGTRNSHLI--SKHSYEKGVIKLKHKLKLAYTCKVCGTRNSHLISKHSYE-KGVVI 144 (272)
Q Consensus 84 ~i~fTCkvC~TRSSh~I--SK~Sy~kGv~~~~~~~~L~FTCk~C~tRS~h~ISK~AY~-kGvVi 144 (272)
.|.-.|.+|+......+ -+.+| .+.-+.+.|.|+.|+.|++-..+--+.+ +|+.+
T Consensus 10 ~~~s~Cp~C~~~g~t~~~~~~IP~------F~eVii~Sf~C~~CGyrn~ev~~~g~~~pkG~r~ 67 (404)
T 2qkd_A 10 SIESLCMNCYRNGTTRLLLTKIPF------FREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRY 67 (404)
T ss_dssp -CEEECTTTSSEEEEEEEEEEETT------TEEEEEEEEECTTTCCEEEEEEEEESSCSSEEEE
T ss_pred CccccCCCCCCCceEEEEEEcCCC------CceEEEEEEECCCCCCchheeeECcccCCCcEEE
Confidence 45568999995432221 22333 3445789999999999998776655554 35444
No 40
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=38.44 E-value=16 Score=25.09 Aligned_cols=60 Identities=28% Similarity=0.536 Sum_probs=32.8
Q ss_pred eecCCcCCcccccc--cCC-cccccccccccceEEEEEcCCCCcccc--cccchh-cccceEEEEEcCCCCcce
Q psy13378 87 YTCKVCGTRNSHLI--SKH-SYEKGVIKLKHKLKLAYTCKVCGTRNS--HLISKH-SYEKGVVIVKCEGCSNNH 154 (272)
Q Consensus 87 fTCkvC~TRSSh~I--SK~-Sy~kGv~~~~~~~~L~FTCk~C~tRS~--h~ISK~-AY~kGvViVqC~gC~n~H 154 (272)
|.|..|+....... ..+ ....+. -.|.|+.|+..-. ..+..| ..+.+.-..+|+.|...-
T Consensus 9 ~~C~~C~~~f~~~~~l~~H~~~h~~~--------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 74 (96)
T 2dmd_A 9 HKCEVCGKCFSRKDKLKTHMRCHTGV--------KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYAS 74 (96)
T ss_dssp CCBTTTTBCCCCHHHHHHHGGGCCCC--------CSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEE
T ss_pred eECCCCCCccCCHHHHHHHHHhcCCC--------CCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCcc
Confidence 79999997653210 000 011111 1499999985421 112222 345566678999997643
No 41
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=37.77 E-value=14 Score=30.19 Aligned_cols=36 Identities=17% Similarity=0.429 Sum_probs=17.2
Q ss_pred ccccceEEEEEcCCCCcccccccchhcccceEEEEEcCCCCcc
Q psy13378 111 KLKHKLKLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNN 153 (272)
Q Consensus 111 ~~~~~~~L~FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~ 153 (272)
+++-+..-.|||+.|+..+.+..+ +=|-+|+.|...
T Consensus 52 kiE~~q~akytCPfCGk~~vKR~a-------vGIW~C~~Cgk~ 87 (116)
T 3cc2_Z 52 EIESEMNEDHACPNCGEDRVDRQG-------TGIWQCSYCDYK 87 (116)
T ss_dssp HHHHHHHSCEECSSSCCEEEEEEE-------TTEEEETTTCCE
T ss_pred HHHHHhccCCcCCCCCCceeEecC-------ceeEECCCCCCE
Confidence 333333445666666643322222 225566666543
No 42
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=37.62 E-value=17 Score=30.62 Aligned_cols=28 Identities=21% Similarity=0.602 Sum_probs=17.9
Q ss_pred eeeeecCCcCCcccccccCCcccccccccccceEEEEEcCCCCcc
Q psy13378 84 KLAYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGTR 128 (272)
Q Consensus 84 ~i~fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~tR 128 (272)
...|.|++||.-.. |-..|. .||.|+..
T Consensus 153 ~~~~~C~~CG~~~~----------g~~~p~-------~CP~C~~~ 180 (191)
T 1lko_A 153 ATKWRCRNCGYVHE----------GTGAPE-------LCPACAHP 180 (191)
T ss_dssp EEEEEETTTCCEEE----------EEECCS-------BCTTTCCB
T ss_pred CceEEECCCCCEee----------CCCCCC-------CCCCCcCC
Confidence 44799999995431 211222 79999975
No 43
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=37.57 E-value=5.5 Score=31.02 Aligned_cols=62 Identities=23% Similarity=0.466 Sum_probs=34.9
Q ss_pred eeeecCCcCCcccccc--cCC-cccccccccccceEEEEEcCCCCcc--cccccchh-cccceEEEEEcCCCCcce
Q psy13378 85 LAYTCKVCGTRNSHLI--SKH-SYEKGVIKLKHKLKLAYTCKVCGTR--NSHLISKH-SYEKGVVIVKCEGCSNNH 154 (272)
Q Consensus 85 i~fTCkvC~TRSSh~I--SK~-Sy~kGv~~~~~~~~L~FTCk~C~tR--S~h~ISK~-AY~kGvViVqC~gC~n~H 154 (272)
..|+|.+|+...+... ..+ ..+.|.. .|.|+.|+.. +...+..| ..+.|.-..+|+.|...-
T Consensus 21 k~y~C~~C~k~F~~~~~L~~H~~~H~~~k--------~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F 88 (133)
T 2lt7_A 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEK--------KYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSF 88 (133)
T ss_dssp EEEEETTTCCEESCHHHHHHHHHHHHCCS--------CEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEE
T ss_pred cCeECCCCCCCcCCHHHHHHHHHHcCCCC--------CeeCCccCeecccccchhhhccccCCCccccCCCCCCCc
Confidence 4599999997753310 000 0111221 4999999943 11222222 345577778999997653
No 44
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=36.73 E-value=8.3 Score=31.92 Aligned_cols=33 Identities=24% Similarity=0.700 Sum_probs=26.8
Q ss_pred EEcCCCCcccccccchhcccceEEEEEcCCCCcceee
Q psy13378 120 YTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNNHLI 156 (272)
Q Consensus 120 FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~HLI 156 (272)
.+|+.|+...+.++- +.++.+.+|..|.++.-+
T Consensus 103 VlC~~C~sPdT~l~k----~~r~~~l~C~ACGa~~~V 135 (138)
T 1nee_A 103 VICHECNRPDTRIIR----EGRISLLKCEACGAKAPL 135 (138)
T ss_dssp HHHTCCSSCSSCCEE----ETTTTEEECSTTSCCCCS
T ss_pred EECCCCCCcCcEEEE----cCCeEEEEccCCCCCccc
Confidence 579999988888874 468899999999887654
No 45
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=35.18 E-value=20 Score=28.70 Aligned_cols=37 Identities=22% Similarity=0.412 Sum_probs=19.4
Q ss_pred ecCCcCCcccccccCCcccccccccccceEEEEEcCCCCcc
Q psy13378 88 TCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGTR 128 (272)
Q Consensus 88 TCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~tR 128 (272)
-|+.|++- .|+......-+.. .++-.|++||..|++.
T Consensus 62 ~Ck~C~s~---LIPG~t~~vri~~-~~k~~vv~tCl~Cg~~ 98 (123)
T 2k3r_A 62 YCKKCHAF---LVPGINARVRLRQ-KRMPHIVVKCLECGHI 98 (123)
T ss_dssp BCTTTCCB---CCBTTTEEEEEEC-SSSCEEEEEETTTTEE
T ss_pred hccCCCCE---eECCCceEEEEec-CCccEEEEECCCCCCE
Confidence 79999853 3444333211111 1112477788888754
No 46
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=34.87 E-value=8.3 Score=32.35 Aligned_cols=33 Identities=30% Similarity=0.768 Sum_probs=25.4
Q ss_pred EEcCCCCcccccccchhcccceEEEEEcCCCCcceee
Q psy13378 120 YTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNNHLI 156 (272)
Q Consensus 120 FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~HLI 156 (272)
.+|+.|+...+.++- +.++.+.+|..|.++.-+
T Consensus 105 VlC~~C~sPdT~L~k----~~r~~~l~C~ACGa~~~V 137 (148)
T 2d74_B 105 VICPVCGSPDTKIIK----RDRFHFLKCEACGAETPI 137 (148)
T ss_dssp SSCSSSCCTTCCCCB----SSSSBCCCCSSSCCCCCC
T ss_pred EECCCCCCcCcEEEE----eCCEEEEEecCCCCCccc
Confidence 578888888877774 357888888888877654
No 47
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=34.25 E-value=7 Score=27.96 Aligned_cols=36 Identities=28% Similarity=0.579 Sum_probs=22.4
Q ss_pred EEEcCCCCccc--ccccchh-cccceEEEEEcCCCCcce
Q psy13378 119 AYTCKVCGTRN--SHLISKH-SYEKGVVIVKCEGCSNNH 154 (272)
Q Consensus 119 ~FTCk~C~tRS--~h~ISK~-AY~kGvViVqC~gC~n~H 154 (272)
.|.|+.|+..- ...+..| ..+.|....+|+.|...-
T Consensus 66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 104 (124)
T 2dlq_A 66 VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQF 104 (124)
T ss_dssp CEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEE
T ss_pred CeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchh
Confidence 48999998542 1222222 345677778999997653
No 48
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=33.85 E-value=14 Score=30.30 Aligned_cols=43 Identities=19% Similarity=0.452 Sum_probs=30.1
Q ss_pred ccccceeeeeecCCcCCcccccccCCcccccccccccceEEEEEcCCCCcccccccchhccc
Q psy13378 78 QLEHKLKLAYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGTRNSHLISKHSYE 139 (272)
Q Consensus 78 q~~~k~~i~fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~tRS~h~ISK~AY~ 139 (272)
+++-.....|+|+.|+..+-...+ ++ +..|+.|+ +.|+-.||.
T Consensus 52 kiE~~q~akytCPfCGk~~vKR~a-------vG--------IW~C~~Cg----k~fAGGAy~ 94 (116)
T 3cc2_Z 52 EIESEMNEDHACPNCGEDRVDRQG-------TG--------IWQCSYCD----YKFTGGSYK 94 (116)
T ss_dssp HHHHHHHSCEECSSSCCEEEEEEE-------TT--------EEEETTTC----CEEECCSSS
T ss_pred HHHHHhccCCcCCCCCCceeEecC-------ce--------eEECCCCC----CEEECCCcc
Confidence 355566778999999965433222 22 58999999 678888775
No 49
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.37 E-value=1.6 Score=28.52 Aligned_cols=30 Identities=17% Similarity=0.460 Sum_probs=18.1
Q ss_pred eeecCCcCCcccccccCCcccccccccccceEEEEEcCCCCc
Q psy13378 86 AYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGT 127 (272)
Q Consensus 86 ~fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~t 127 (272)
.|.|..|+...... ..... .-.|.|+.|+.
T Consensus 18 ~~~C~~C~k~f~~~---~~l~~---------~~~~~C~~C~~ 47 (73)
T 2ctu_A 18 SQKCSKCGIIFIRR---STLSR---------RKTPMCEKCRK 47 (73)
T ss_dssp EEECSSSCCEEECC---CCCCC---------SSSCCCHHHHH
T ss_pred CeeCCcccchhCCH---HHhCc---------CCCCCCCCCCh
Confidence 48999999775331 11111 11388999974
No 50
>2b9d_A E7 protein; zinc finger, homodimer, transcription, viral protein; 1.60A {Human papillomavirus type 1A} SCOP: g.91.1.1
Probab=32.97 E-value=10 Score=26.74 Aligned_cols=39 Identities=10% Similarity=0.253 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCcccccccchhccc----------ceEEEEEcCCCCcce
Q psy13378 114 HKLKLAYTCKVCGTRNSHLISKHSYE----------KGVVIVKCEGCSNNH 154 (272)
Q Consensus 114 ~~~~L~FTCk~C~tRS~h~ISK~AY~----------kGvViVqC~gC~n~H 154 (272)
..|.|.-.|..|+.+ =.+.=.|=+ -|.+-+-||.|..+|
T Consensus 3 ~~Y~I~t~C~~C~~~--lrl~V~at~~~IR~lqqLLl~~L~lvCp~Ca~~~ 51 (52)
T 2b9d_A 3 QPYAVVASCAYCEKL--VRLTVLADHSAIRQLEEMLLRSLNIVCPLCTLQR 51 (52)
T ss_dssp EEEEEEEECTTTCCE--EEEEEEECHHHHHHHHHHHHHTCCCCCTTTTTCC
T ss_pred ccEEEEEECCCCCCe--EEEEEEeCchhHHHHHHHhhCCceEECcchhccC
Confidence 356677777777754 112111111 244556677777665
No 51
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=32.58 E-value=34 Score=25.57 Aligned_cols=11 Identities=18% Similarity=0.628 Sum_probs=5.6
Q ss_pred eeeecCCcCCc
Q psy13378 85 LAYTCKVCGTR 95 (272)
Q Consensus 85 i~fTCkvC~TR 95 (272)
+.++|.-|+..
T Consensus 4 ~~~~c~~c~~~ 14 (148)
T 3p2a_A 4 MNTVCTACMAT 14 (148)
T ss_dssp EEEECTTTCCE
T ss_pred cEEECcccccc
Confidence 34555555543
No 52
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=32.25 E-value=28 Score=27.70 Aligned_cols=35 Identities=34% Similarity=0.558 Sum_probs=19.6
Q ss_pred ecCCcCCcccccccCCcccccccccccc--eEEEEEcCCCCcc
Q psy13378 88 TCKVCGTRNSHLISKHSYEKGVIKLKHK--LKLAYTCKVCGTR 128 (272)
Q Consensus 88 TCkvC~TRSSh~ISK~Sy~kGv~~~~~~--~~L~FTCk~C~tR 128 (272)
-|+.|++- .|+...... +++.. -.|++||..|++.
T Consensus 67 ~Ck~C~s~---LiPG~t~~v---ri~~~~~~~vv~tCl~Cg~~ 103 (120)
T 1x0t_A 67 YCKRCHTF---LIPGVNARV---RLRTKRMPHVVITCLECGYI 103 (120)
T ss_dssp BCTTTCCB---CCBTTTEEE---EEECSSSCEEEEEETTTCCE
T ss_pred hccCCCCE---eECCCceEE---EEecCCccEEEEECCCCCCE
Confidence 79999853 344433221 12211 2578888888865
No 53
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=31.50 E-value=16 Score=27.46 Aligned_cols=12 Identities=58% Similarity=1.173 Sum_probs=5.6
Q ss_pred ceeeeeecCCcC
Q psy13378 82 KLKLAYTCKVCG 93 (272)
Q Consensus 82 k~~i~fTCkvC~ 93 (272)
.....|+|+.|+
T Consensus 23 ~q~~ky~C~fCg 34 (73)
T 1ffk_W 23 KHKKKYKCPVCG 34 (73)
T ss_pred hcccCccCCCCC
Confidence 333444555555
No 54
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.37 E-value=22 Score=27.46 Aligned_cols=42 Identities=26% Similarity=0.585 Sum_probs=23.6
Q ss_pred cccceeeeeecCCcCCcccccccCCcccccccccccceEEEEEcCCCCcccccccchhccc
Q psy13378 79 LEHKLKLAYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGTRNSHLISKHSYE 139 (272)
Q Consensus 79 ~~~k~~i~fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~tRS~h~ISK~AY~ 139 (272)
++-.....|+|+.|+.-+-.. . +++ +..|+.|+ +.|+--||.
T Consensus 28 ie~~q~~ky~CpfCGk~~vkR---~----a~G--------IW~C~kCg----~~~AGGAy~ 69 (83)
T 3j21_i 28 VEAKMRQKHTCPVCGRKAVKR---I----STG--------IWQCQKCG----ATFAGGAYL 69 (83)
T ss_dssp HHHHHHSCBCCSSSCSSCEEE---E----ETT--------EEEETTTC----CEEECCSSS
T ss_pred HHHHhhcccCCCCCCCceeEe---c----CcC--------eEEcCCCC----CEEeCCccc
Confidence 344445567888888554221 1 122 47788887 456655554
No 55
>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23
Probab=31.22 E-value=30 Score=28.60 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=16.8
Q ss_pred cchhcccceEEEEEcCCCCccee
Q psy13378 133 ISKHSYEKGVVIVKCEGCSNNHL 155 (272)
Q Consensus 133 ISK~AY~kGvViVqC~gC~n~HL 155 (272)
+++..-..+.++..|++|+-.++
T Consensus 8 ~~~~~~yarA~lEvC~~CkL~~~ 30 (129)
T 2a2p_A 8 WNRLRGLARGRVETCGGCQLNRL 30 (129)
T ss_dssp HHHHTTCCEEEEEEETTCCCSTT
T ss_pred hhhhcccceEEEEECCCcccccc
Confidence 45555566788899999986665
No 56
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=30.97 E-value=20 Score=24.80 Aligned_cols=24 Identities=25% Similarity=0.670 Sum_probs=16.9
Q ss_pred EcCCCCcccccccchhcccceEEEEEcCCCCcc
Q psy13378 121 TCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNN 153 (272)
Q Consensus 121 TCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~ 153 (272)
.|+.|+.. |..+...|+|..|..+
T Consensus 8 ~C~~C~~~---------~~~~~~mI~Cd~C~~W 31 (64)
T 1we9_A 8 QCGACGES---------YAADEFWICCDLCEMW 31 (64)
T ss_dssp CCSSSCCC---------CCSSSCEEECSSSCCE
T ss_pred CCCCCCCc---------cCCCCCEEEccCCCCC
Confidence 58888643 4445668999999765
No 57
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=30.89 E-value=18 Score=28.34 Aligned_cols=55 Identities=24% Similarity=0.489 Sum_probs=29.3
Q ss_pred eeeecCCcCCcccccccC------CcccccccccccceEEEEEcCCCCcccccccchhcccceEEEEEcCCCCcc
Q psy13378 85 LAYTCKVCGTRNSHLISK------HSYEKGVIKLKHKLKLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNN 153 (272)
Q Consensus 85 i~fTCkvC~TRSSh~ISK------~Sy~kGv~~~~~~~~L~FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~ 153 (272)
-+|+|..|...+ ...|+ |++.. + ....=-|.|. |+.|+.-. +.| =...|++|...
T Consensus 14 ~av~C~~C~yt~-~~~~~~C~~~~H~l~~-~----~a~KRFFkC~-C~~Rt~sl---~r~----P~~~C~~Cg~~ 74 (92)
T 2kwq_A 14 RVVTCKTCKYTH-FKPKETCVSENHDFHW-H----NGVKRFFKCP-CGNRTISL---DRL----PKKHCSTCGLF 74 (92)
T ss_dssp EEEEETTTCCEE-SSCCHHHHHTTCCEEE-E----EEECEEEECT-TSCEEEES---SSS----CCSCCTTTCSC
T ss_pred EEEEccCCccee-cCcchhHHhcCCceEE-E----eeeEEEEECC-CCCceeEe---eeC----CCCCCCCCCCC
Confidence 368999998443 32332 22211 0 1111259997 99885433 222 22368888876
No 58
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.81 E-value=28 Score=25.76 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=19.2
Q ss_pred cceEEEEEcCCCCcccccccchhcccceEEEEEcCCCCcc
Q psy13378 114 HKLKLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNN 153 (272)
Q Consensus 114 ~~~~L~FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~ 153 (272)
+++.|...|+.|.+-+. .|| |-.-.|.|.+|..-
T Consensus 10 nS~Fm~VkCp~C~~~q~-VFS-----ha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 10 RSRFLRVKCIDCGNEQI-VFS-----HPATKVRCLICGAT 43 (63)
T ss_dssp SCCEEEEECSSSCCEEE-EES-----SCSSCEECSSSCCE
T ss_pred CCcEEEEECCCCCCeeE-EEe-----cCCeEEEccCcCCE
Confidence 45567777777774421 233 33345677777653
No 59
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=29.91 E-value=25 Score=30.13 Aligned_cols=40 Identities=18% Similarity=0.422 Sum_probs=30.7
Q ss_pred EEcCCCCcccccccchhcccceEEEEEcCCCCcceeeecccc
Q psy13378 120 YTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNNHLIADNLK 161 (272)
Q Consensus 120 FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~HLIADnLg 161 (272)
.+|+.|+...+.++-+. +.++.+.+|..|.++.-+.=+-+
T Consensus 97 VlC~~C~sPdT~L~k~~--~~r~~~l~C~ACGa~~~V~~~~k 136 (170)
T 2g2k_A 97 VLCPECENPETDLHVNP--KKQTIGNSCKACGYRGMLDTHHK 136 (170)
T ss_dssp HSCTTTSSSCEEEEEET--TTTEEEEEETTTCCCCCSCSSSS
T ss_pred EECCCCCCCccEEEEec--CCCEEEEEccccCCccccccccc
Confidence 58999998888877522 47889999999999888753433
No 60
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=29.65 E-value=11 Score=34.38 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=6.2
Q ss_pred ceeeeeecCCcCC
Q psy13378 82 KLKLAYTCKVCGT 94 (272)
Q Consensus 82 k~~i~fTCkvC~T 94 (272)
.+...-.|+.|+.
T Consensus 17 ~~~~~~~Cp~Cg~ 29 (345)
T 3k7a_M 17 NLNIVLTCPECKV 29 (345)
T ss_dssp CCCCCCCCSTTCC
T ss_pred cccCCCcCcCCCC
Confidence 3333445666653
No 61
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=29.42 E-value=23 Score=30.87 Aligned_cols=13 Identities=31% Similarity=0.738 Sum_probs=7.8
Q ss_pred eeeeecCCcCCcc
Q psy13378 84 KLAYTCKVCGTRN 96 (272)
Q Consensus 84 ~i~fTCkvC~TRS 96 (272)
.+.|+|+.|++.+
T Consensus 20 ~l~l~Cp~C~~~~ 32 (206)
T 3flo_B 20 TLELSCPSCDKRF 32 (206)
T ss_dssp CEEEECTTTCCEE
T ss_pred eeEEECCCCCCcc
Confidence 3566676666543
No 62
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=29.37 E-value=27 Score=27.47 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=9.1
Q ss_pred ccceeeeeecCCcCCcc
Q psy13378 80 EHKLKLAYTCKVCGTRN 96 (272)
Q Consensus 80 ~~k~~i~fTCkvC~TRS 96 (272)
+-.....|+|+.|+.-+
T Consensus 30 e~~q~~ky~CpfCgk~~ 46 (92)
T 3iz5_m 30 EVSQHSKYFCEFCGKFA 46 (92)
T ss_dssp HHHHHSCBCCTTTCSSC
T ss_pred HHHHhccccCcccCCCe
Confidence 33344456777776443
No 63
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=29.23 E-value=14 Score=32.09 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=28.9
Q ss_pred ccccce-EEEEEc--CCCCcccccccchhcccceEEEEEcCCCCcce-eeec-ccccccc
Q psy13378 111 KLKHKL-KLAYTC--KVCGTRNSHLISKHSYEKGVVIVKCEGCSNNH-LIAD-NLKWFTD 165 (272)
Q Consensus 111 ~~~~~~-~L~FTC--k~C~tRS~h~ISK~AY~kGvViVqC~gC~n~H-LIAD-nLgwF~d 165 (272)
.+++++ ...|+| ..|++...-.+..+.+.+-+....||.|.++. +.-+ +.--|.|
T Consensus 132 ~V~p~~~~~~f~C~~~~C~~~~~~~~~~~~~~~~~~P~~Cp~C~~~~~~~l~~~~s~f~D 191 (268)
T 2vl6_A 132 PVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKPGQFRLIPEKTKLID 191 (268)
T ss_dssp CCEEEEEECEEEEECTTCCCEEESSTTSCCCTTCCCCSBCTTTCCBCEEEECGGGCEEEE
T ss_pred CcceEeEEEEEECCCCCCCCEEeeeecccCCCcccCCccCCCCCCCCCEEEecCccEEEe
Confidence 444443 567999 99996532221112222223446799999863 3222 3344544
No 64
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=29.21 E-value=27 Score=27.51 Aligned_cols=18 Identities=33% Similarity=0.833 Sum_probs=9.9
Q ss_pred cccceeeeeecCCcCCcc
Q psy13378 79 LEHKLKLAYTCKVCGTRN 96 (272)
Q Consensus 79 ~~~k~~i~fTCkvC~TRS 96 (272)
++-.....|+|+.|+.-+
T Consensus 29 ie~~q~~ky~CpfCgk~~ 46 (92)
T 3izc_m 29 LEIQQHARYDCSFCGKKT 46 (92)
T ss_dssp HHHHHHSCCCCSSSCSSC
T ss_pred HHHHHhcCCcCCCCCCce
Confidence 333444556777777443
No 65
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=28.65 E-value=24 Score=26.61 Aligned_cols=43 Identities=26% Similarity=0.746 Sum_probs=26.4
Q ss_pred ccccceeeeeecCCcCCcccccccCCcccccccccccceEEEEEcCCCCcccccccchhccc
Q psy13378 78 QLEHKLKLAYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGTRNSHLISKHSYE 139 (272)
Q Consensus 78 q~~~k~~i~fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~tRS~h~ISK~AY~ 139 (272)
+++-.....|+|+.|+.-+-. ..+ .|+ ..|+.|+ +.|+--||.
T Consensus 18 kie~~q~~ky~C~fCgk~~vk---R~a--~GI----------W~C~~C~----~~~AGGAy~ 60 (72)
T 3jyw_9 18 KLEIQQHARYDCSFCGKKTVK---RGA--AGI----------WTCSCCK----KTVAGGAYT 60 (72)
T ss_dssp HHHHHHHSCBCCSSCCSSCBS---BCS--SSC----------BCCSSSC----CCCCCSSSS
T ss_pred HHHHHhccCccCCCCCCceeE---ecC--CCe----------EECCCCC----CEEeCCccc
Confidence 344555567888888855433 222 233 7888887 556666664
No 66
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=28.56 E-value=29 Score=28.98 Aligned_cols=12 Identities=33% Similarity=0.969 Sum_probs=9.6
Q ss_pred eeeecCCcCCcc
Q psy13378 85 LAYTCKVCGTRN 96 (272)
Q Consensus 85 i~fTCkvC~TRS 96 (272)
..|.|++||.-.
T Consensus 137 ~~~~C~~CG~i~ 148 (170)
T 3pwf_A 137 KVYICPICGYTA 148 (170)
T ss_dssp CEEECTTTCCEE
T ss_pred CeeEeCCCCCee
Confidence 578999999554
No 67
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=28.19 E-value=25 Score=28.30 Aligned_cols=11 Identities=36% Similarity=1.056 Sum_probs=5.5
Q ss_pred eeeeecCCcCC
Q psy13378 84 KLAYTCKVCGT 94 (272)
Q Consensus 84 ~i~fTCkvC~T 94 (272)
...|+|+.|+.
T Consensus 34 ~aky~CpfCgk 44 (103)
T 4a17_Y 34 HAKYGCPFCGK 44 (103)
T ss_dssp HSCEECTTTCC
T ss_pred hcCCCCCCCCC
Confidence 34455555553
No 68
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.64 E-value=34 Score=28.93 Aligned_cols=38 Identities=16% Similarity=0.415 Sum_probs=27.7
Q ss_pred EEcCCCCcccccccchhcccceEEEEEcCCCCcceeeecc
Q psy13378 120 YTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNNHLIADN 159 (272)
Q Consensus 120 FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~HLIADn 159 (272)
.+|+.|+...+.++-. -+.++.+.+|..|.++.-+.=+
T Consensus 104 VlC~~C~sPdT~L~~~--~~~r~~~l~C~ACGa~~~V~~~ 141 (157)
T 2e9h_A 104 VLCPECENPETDLHVN--PKKQTIGNSCKACGYRGMLDTH 141 (157)
T ss_dssp TSCTTTCCSCCEEEEE--TTTTEEEEECSSSCCEEECCCC
T ss_pred EECCCCCCCccEEEEe--cCCCEEEEEccCCCCCCcccch
Confidence 5799998887777641 1367888999999888776433
No 69
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.76 E-value=18 Score=24.17 Aligned_cols=11 Identities=36% Similarity=0.993 Sum_probs=7.6
Q ss_pred eeecCCcCCcc
Q psy13378 86 AYTCKVCGTRN 96 (272)
Q Consensus 86 ~fTCkvC~TRS 96 (272)
.|.|.+|+.+.
T Consensus 15 ~~~C~~C~k~f 25 (77)
T 2ct1_A 15 PYECYICHARF 25 (77)
T ss_dssp SEECTTTCCEE
T ss_pred CeECCCcCchh
Confidence 37788887654
No 70
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=26.21 E-value=31 Score=31.84 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=23.6
Q ss_pred eeeccccccccCCCCCCCHHHHHHHhCCeeeecee
Q psy13378 155 LIADNLKWFTDLKPGVTNIEHILAEKGEQGCKGLF 189 (272)
Q Consensus 155 LIADnLgwF~d~~~g~~tIEdil~~kGE~V~kg~~ 189 (272)
+=-||+.|+++ |+|+|+++|.+-++.|..
T Consensus 172 I~~DHld~lG~------t~e~ia~~Ka~I~~~~~~ 200 (437)
T 3nrs_A 172 IALDHTDWLGY------DRESIGREKAGVFRGGKP 200 (437)
T ss_dssp CCCCBCCCTTC------SHHHHHHHHGGGCCTTSE
T ss_pred ccHHHHHHhCC------cHHHHHHHHHhhccCCCe
Confidence 44689999985 899999999998876643
No 71
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.08 E-value=16 Score=31.83 Aligned_cols=31 Identities=19% Similarity=0.466 Sum_probs=21.3
Q ss_pred EcCCCCcccccccchhccc---ceEEEEEcCCCCccee
Q psy13378 121 TCKVCGTRNSHLISKHSYE---KGVVIVKCEGCSNNHL 155 (272)
Q Consensus 121 TCk~C~tRS~h~ISK~AY~---kGvViVqC~gC~n~HL 155 (272)
+|.+|... |+++-|. +|--|++||.|.---.
T Consensus 200 ~C~GC~~~----lppq~~~~i~~~~~Iv~Cp~CgRIL~ 233 (256)
T 3na7_A 200 ACGGCFIR----LNDKIYTEVLTSGDMITCPYCGRILY 233 (256)
T ss_dssp BCTTTCCB----CCHHHHHHHHHSSSCEECTTTCCEEE
T ss_pred ccCCCCee----eCHHHHHHHHCCCCEEECCCCCeeEE
Confidence 79999855 4444442 2545799999987665
No 72
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.04 E-value=34 Score=24.51 Aligned_cols=9 Identities=33% Similarity=1.043 Sum_probs=7.7
Q ss_pred EEcCCCCcc
Q psy13378 120 YTCKVCGTR 128 (272)
Q Consensus 120 FTCk~C~tR 128 (272)
|||+.|+.|
T Consensus 24 Y~CPrC~~~ 32 (56)
T 2yqq_A 24 YRCPACRVP 32 (56)
T ss_dssp EECTTTCCE
T ss_pred eeCCCCCCC
Confidence 899999866
No 73
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=26.02 E-value=24 Score=30.07 Aligned_cols=11 Identities=18% Similarity=0.673 Sum_probs=6.6
Q ss_pred EEEEcCCCCcc
Q psy13378 143 VIVKCEGCSNN 153 (272)
Q Consensus 143 ViVqC~gC~n~ 153 (272)
-.|+|.+|+.|
T Consensus 20 ~MIqCd~C~~W 30 (183)
T 3lqh_A 20 KMMQCGKCDRW 30 (183)
T ss_dssp CEEECTTTCCE
T ss_pred CeEECCCCCcc
Confidence 36666666654
No 74
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=25.30 E-value=33 Score=28.90 Aligned_cols=23 Identities=30% Similarity=0.895 Sum_probs=15.8
Q ss_pred ecCCcCCcccccccCCcccccccccccceEEEEEcCCCC
Q psy13378 88 TCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCG 126 (272)
Q Consensus 88 TCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~ 126 (272)
.|+.|+... .|+.|. .|-|+.|.
T Consensus 29 ~CP~C~sey-------tYeDg~---------l~vCPeC~ 51 (138)
T 2akl_A 29 PCPQCNSEY-------TYEDGA---------LLVCPECA 51 (138)
T ss_dssp CCTTTCCCC-------CEECSS---------SEEETTTT
T ss_pred CCCCCCCcc-------eEecCC---------eEECCccc
Confidence 688887333 566666 48888887
No 75
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=24.69 E-value=39 Score=23.21 Aligned_cols=37 Identities=27% Similarity=0.606 Sum_probs=19.5
Q ss_pred eeeecCCcCCcccccccCCcccccccccccceEEEEEcCCCCcc
Q psy13378 85 LAYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGTR 128 (272)
Q Consensus 85 i~fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~tR 128 (272)
-.|.|++||.---...-. .+....+-. .++|+.|+..
T Consensus 3 ~~y~C~vCGyvyd~~~Gd---~t~f~~lP~----dw~CP~Cg~~ 39 (46)
T 6rxn_A 3 QKYVCNVCGYEYDPAEHD---NVPFDQLPD----DWCCPVCGVS 39 (46)
T ss_dssp CCEEETTTCCEECGGGGT---TCCGGGSCT----TCBCTTTCCB
T ss_pred CEEECCCCCeEEeCCcCC---CcchhhCCC----CCcCcCCCCc
Confidence 458999999654221111 011111111 3799999965
No 76
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=23.86 E-value=26 Score=27.79 Aligned_cols=32 Identities=28% Similarity=0.658 Sum_probs=22.4
Q ss_pred eeeeeecCCcCCcccccccCCcccccccccccceEEEEEcCCCCcccccc
Q psy13378 83 LKLAYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGTRNSHL 132 (272)
Q Consensus 83 ~~i~fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~tRS~h~ 132 (272)
...+..|+-||.+|-| +.|. ||-.|+.++.++
T Consensus 13 ~KtHtlCrRCG~~syH-~qK~-----------------~Ca~CGyps~r~ 44 (94)
T 4a18_A 13 QKTHTLCRRCGKATYH-KQKL-----------------RCAACGYPDAKM 44 (94)
T ss_dssp CCCEEECTTTCSEEEE-TTTT-----------------EESSSCGGGSSC
T ss_pred CCccceecCcCchhhh-hccc-----------------cccccCCcHHHh
Confidence 4567789999988766 3332 799998775544
No 77
>2gag_D Heterotetrameric sarcosine oxidase delta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_D* 1x31_D* 1vrq_D* 3ad7_D* 3ad8_D* 3ad9_D* 3ada_D*
Probab=23.82 E-value=18 Score=28.79 Aligned_cols=17 Identities=29% Similarity=0.706 Sum_probs=12.2
Q ss_pred EEEEcCCCCcccccccc
Q psy13378 118 LAYTCKVCGTRNSHLIS 134 (272)
Q Consensus 118 L~FTCk~C~tRS~h~IS 134 (272)
|..+|+-|+.|....|+
T Consensus 2 m~I~CP~CG~R~e~EF~ 18 (99)
T 2gag_D 2 MLIDCPNCGPRNENEFK 18 (99)
T ss_dssp CEEEETTTEEEEGGGSE
T ss_pred CEecCCCCCCcchhhEe
Confidence 45788888887766664
No 78
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=23.59 E-value=29 Score=24.84 Aligned_cols=26 Identities=23% Similarity=0.685 Sum_probs=19.2
Q ss_pred EEEcCCCCcccccccchhcccceEEEEEcC-CCCcc
Q psy13378 119 AYTCKVCGTRNSHLISKHSYEKGVVIVKCE-GCSNN 153 (272)
Q Consensus 119 ~FTCk~C~tRS~h~ISK~AY~kGvViVqC~-gC~n~ 153 (272)
.+.|..|... |..+.-.|+|. +|+.+
T Consensus 8 ~~~C~~C~~p---------~~~~~~mI~CD~~C~~W 34 (65)
T 2vpb_A 8 VYPCGICTNE---------VNDDQDAILCEASCQKW 34 (65)
T ss_dssp -CBCTTTCSB---------CCTTSCEEEBTTTTCCE
T ss_pred cCcCccCCCc---------cCCCCCeEecccCcccc
Confidence 4789999744 55667789999 99753
No 79
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=23.51 E-value=35 Score=25.47 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcccccccchhcccceEEEEEcCCCCcc
Q psy13378 116 LKLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNN 153 (272)
Q Consensus 116 ~~L~FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~ 153 (272)
+.|-..|+.|.+-+ -.|| +-.-.|.|.+|.+-
T Consensus 4 ~Fm~VKCp~C~niq-~VFS-----hA~tvV~C~~Cg~~ 35 (66)
T 1qxf_A 4 RFVKVKCPDCEHEQ-VIFD-----HPSTIVKCIICGRT 35 (66)
T ss_dssp CEEEEECTTTCCEE-EEES-----SCSSCEECSSSCCE
T ss_pred eeEEEECCCCCCce-EEEe-----cCceEEEcccCCCE
Confidence 45677788887442 2222 33445777777754
No 80
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=22.97 E-value=33 Score=29.33 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=17.9
Q ss_pred eeeecCCcCCcccccccCCcccccccccccceEEEEEcCCCCcc
Q psy13378 85 LAYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGTR 128 (272)
Q Consensus 85 i~fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~tR 128 (272)
..|.|++||.-.- |. . | ..||.|+..
T Consensus 170 ~~~~C~~CG~i~~----------g~-~--p-----~~CP~C~~~ 195 (202)
T 1yuz_A 170 KFHLCPICGYIHK----------GE-D--F-----EKCPICFRP 195 (202)
T ss_dssp CEEECSSSCCEEE----------SS-C--C-----SBCTTTCCB
T ss_pred cEEEECCCCCEEc----------Cc-C--C-----CCCCCCCCC
Confidence 4799999995432 11 1 1 689999976
No 81
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=22.45 E-value=8.8 Score=31.81 Aligned_cols=33 Identities=21% Similarity=0.490 Sum_probs=21.6
Q ss_pred EEcCCCCcccccccchhcccceEEEEEcCCCCcceee
Q psy13378 120 YTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNNHLI 156 (272)
Q Consensus 120 FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~HLI 156 (272)
.+|+.|+...+.++- +.++.+.+|..|.++.-+
T Consensus 104 VlC~~C~sPdT~l~k----~~r~~~l~C~ACGa~~~V 136 (139)
T 3cw2_K 104 VECSTCKSLDTILKK----EKKSWYIVCLACGAQTPV 136 (139)
T ss_dssp SSCCSSSSSCCCSCS----SCSTTTSSCCC-------
T ss_pred eECCCCCCcCcEEEE----eCCeEEEEecCCCCCCcc
Confidence 589999988888775 468888999999877654
No 82
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=22.18 E-value=17 Score=21.68 Aligned_cols=9 Identities=56% Similarity=1.446 Sum_probs=4.7
Q ss_pred eecCCcCCc
Q psy13378 87 YTCKVCGTR 95 (272)
Q Consensus 87 fTCkvC~TR 95 (272)
|.|..|+.+
T Consensus 13 ~~C~~C~k~ 21 (46)
T 2em9_A 13 YNCKECGKS 21 (46)
T ss_dssp EECSSSCCE
T ss_pred eECCccccc
Confidence 555555544
No 83
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=22.09 E-value=55 Score=28.36 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=21.6
Q ss_pred eeeeeec--CCcCCcccccccCCcccccccccccceEEEEEcCCCCccc
Q psy13378 83 LKLAYTC--KVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGTRN 129 (272)
Q Consensus 83 ~~i~fTC--kvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~tRS 129 (272)
...+|+| ..|++...-.+..+.+ .++..-..|+.|+.++
T Consensus 138 ~~~~f~C~~~~C~~~~~~~~~~~~~--------~~~~~P~~Cp~C~~~~ 178 (268)
T 2vl6_A 138 YKATYKHIHPDCMQEFEWPEDEEMP--------EVLEMPTICPKCGKPG 178 (268)
T ss_dssp EECEEEEECTTCCCEEESSTTSCCC--------TTCCCCSBCTTTCCBC
T ss_pred EEEEEECCCCCCCCEEeeeecccCC--------CcccCCccCCCCCCCC
Confidence 4678999 9999654222101111 1111224699999874
No 84
>2xst_A Lipocalin 15; transport protein, LCN15, MSFL2541; 1.63A {Homo sapiens}
Probab=21.70 E-value=99 Score=23.30 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=20.0
Q ss_pred CCeeeeccCc---eeeecCCCC--ceeeeCC-------ccEEEeecceec
Q psy13378 4 GGVWKLQDDG---YLNIDADPD--SVIYHPN-------LNILIVENEFSV 41 (272)
Q Consensus 4 ~~~~~~~~~~---~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~ 41 (272)
.|.+++.-.| |.-+|.|.+ .++|.++ -+..|..|.-.+
T Consensus 80 ~g~~~v~~~g~~~~~Vl~tdY~~yaiv~~~~~~~~~~~~~~~llsR~~~~ 129 (161)
T 2xst_A 80 EGHFRVPALGYLDVRIVDTDYSSFAVLYIYKELEGALSTMVQLYSRTQDV 129 (161)
T ss_dssp TTEEEEGGGTEEEEEEEEECSSSEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred CcEEEEecCCeEEEEEEEcCCCCEEEEEEEEccCCeEEEEEEEEccCCCC
Confidence 3555554333 445677776 5667664 234555554433
No 85
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=21.66 E-value=39 Score=24.03 Aligned_cols=25 Identities=32% Similarity=0.873 Sum_probs=18.3
Q ss_pred EEEcCCCCcccccccchhcccceEEEEEcCCCCcc
Q psy13378 119 AYTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNN 153 (272)
Q Consensus 119 ~FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC~n~ 153 (272)
...| .|+.. |..|...|+|..|..|
T Consensus 16 ~~~C-~C~~~---------~~~g~~mI~Cd~C~~W 40 (72)
T 1wee_A 16 KVDC-KCGTK---------DDDGERMLACDGCGVW 40 (72)
T ss_dssp EECC-TTCCC---------SCCSSCEEECSSSCEE
T ss_pred ceEe-eCCCc---------cCCCCcEEECCCCCCc
Confidence 3678 59753 4567778999999765
No 86
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=20.89 E-value=21 Score=35.71 Aligned_cols=17 Identities=18% Similarity=0.554 Sum_probs=0.0
Q ss_pred ccceeeeeecCCcCCcc
Q psy13378 80 EHKLKLAYTCKVCGTRN 96 (272)
Q Consensus 80 ~~k~~i~fTCkvC~TRS 96 (272)
.+....+|.|+.|+-++
T Consensus 111 ~~~~~~tWvC~ICsfsN 127 (566)
T 1w7p_D 111 SADVVSTWVCPICMVSN 127 (566)
T ss_dssp -----------------
T ss_pred ccccccceeccccccCC
Confidence 35567899999998544
No 87
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=20.57 E-value=44 Score=24.35 Aligned_cols=30 Identities=27% Similarity=0.769 Sum_probs=20.5
Q ss_pred eeeeecCCcCCcccccccCCcccccccccccceEEEEEcCCCCc-cccc
Q psy13378 84 KLAYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGT-RNSH 131 (272)
Q Consensus 84 ~i~fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~t-RS~h 131 (272)
..+-.|+-||.+|-| +.|. +|-.|+. ++.+
T Consensus 15 ktH~~CrRCG~~syH-~qK~-----------------~Ca~CGygpa~r 45 (57)
T 1vq8_1 15 TTHTKCRRCGEKSYH-TKKK-----------------VCSSCGFGKSAK 45 (57)
T ss_dssp CCEEECTTTCSEEEE-TTTT-----------------EETTTCTTTCSS
T ss_pred CccccccccCChhhh-cccc-----------------ccccccCCchhh
Confidence 455689999988766 2232 6888887 5543
No 88
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.49 E-value=53 Score=24.27 Aligned_cols=28 Identities=29% Similarity=0.725 Sum_probs=18.9
Q ss_pred eeeecCCcCCcccccccCCcccccccccccceEEEEEcCCCCc-ccc
Q psy13378 85 LAYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGT-RNS 130 (272)
Q Consensus 85 i~fTCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~t-RS~ 130 (272)
.+-.|+-||.+|-| +.|. ||-.|+. ++.
T Consensus 16 tH~lCrRCG~~syH-~qK~-----------------~Ca~CGygps~ 44 (62)
T 3j21_e 16 THIRCRRCGRVSYN-VKKG-----------------YCAACGFGRSR 44 (62)
T ss_dssp CCCBCSSSCSBCEE-TTTT-----------------EETTTCTTTCS
T ss_pred ceeeecccCcchhc-cccc-----------------cccccCCchhh
Confidence 34479999988766 3332 7888887 543
No 89
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=20.35 E-value=55 Score=26.45 Aligned_cols=55 Identities=31% Similarity=0.675 Sum_probs=32.5
Q ss_pred cceeeeee-cCCcCCcccccccCCcccccccccccceEEEEE--cCCCCcccccccchhcccceEE
Q psy13378 81 HKLKLAYT-CKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYT--CKVCGTRNSHLISKHSYEKGVV 143 (272)
Q Consensus 81 ~k~~i~fT-CkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FT--Ck~C~tRS~h~ISK~AY~kGvV 143 (272)
.+|.+.|. |..|+.|---.++..... .-...=.|+|. |+-|. |.|+.|.|..-|+
T Consensus 20 Gsyl~Nf~gC~~C~~~~~~~v~nk~~~----eedgeEiity~H~C~nC~----HvIA~HeYtF~V~ 77 (106)
T 2jox_A 20 GSFLLNFTGCAVCSKRDFMLITNKSLK----EEDGEEIVTYDHLCKNCH----HVIARHEYTFSIM 77 (106)
T ss_dssp CCCTTTBCCCSSSCCSSCEEEEEEEEE----EETTEEEEEEEEEETTTC----CEEEEEEEEEEEE
T ss_pred cceeeechhhhhcCCCceEEEeccccc----cCCCcEEEEEEEecCCCc----eEeeeeeEEEEEe
Confidence 45666665 777887764444433211 11122334554 88887 7888888877664
No 90
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=20.35 E-value=36 Score=31.14 Aligned_cols=48 Identities=21% Similarity=0.577 Sum_probs=0.0
Q ss_pred cccCCcccccccccccceEEEEEcCCCCcccccccchhcccceEEEEEcCCC
Q psy13378 99 LISKHSYEKGVIKLKHKLKLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGC 150 (272)
Q Consensus 99 ~ISK~Sy~kGv~~~~~~~~L~FTCk~C~tRS~h~ISK~AY~kGvViVqC~gC 150 (272)
+....+..+.....++.+.+..+|+.|+..+...+-+ |..|-++ |..|
T Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~Cp~C~~~~~~lv~D--~~~G~~v--C~~C 48 (345)
T 4bbr_M 1 MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVER--FSEGDVV--CALC 48 (345)
T ss_dssp ---------------------CCCSSCCCSSCCEEEE--GGGTEEE--ETTT
T ss_pred CCCcccCCCCccccCcccccCCcCCCCCCCCCceeEE--CCCCcEE--eCCC
No 91
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=20.20 E-value=11 Score=35.20 Aligned_cols=23 Identities=35% Similarity=1.011 Sum_probs=18.0
Q ss_pred ecCCcCCcccccccCCcccccccccccceEEEEEcCCCC
Q psy13378 88 TCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCG 126 (272)
Q Consensus 88 TCkvC~TRSSh~ISK~Sy~kGv~~~~~~~~L~FTCk~C~ 126 (272)
.|.||+-++ ++++-|+ ++|..|.
T Consensus 52 ~C~vC~~~~------~g~hygv----------~~C~~C~ 74 (419)
T 3dzy_D 52 ECRVCGDKA------SGFHYGV----------HACEGCK 74 (419)
T ss_dssp CCSSSCSCC------CSBCSSS----------BCCHHHH
T ss_pred cCeECCCcC------CCCccCc----------ccchhhh
Confidence 699999664 2577777 7899885
No 92
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.09 E-value=13 Score=24.97 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=8.5
Q ss_pred eeecCCcCCcc
Q psy13378 86 AYTCKVCGTRN 96 (272)
Q Consensus 86 ~fTCkvC~TRS 96 (272)
.|.|.+|+.+.
T Consensus 15 ~~~C~~C~~~f 25 (86)
T 1x6h_A 15 PYACSHCDKTF 25 (86)
T ss_dssp CEECSSSSCEE
T ss_pred CCcCCCCCCcc
Confidence 47899998765
Done!