RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13378
(272 letters)
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone
regulator; NMR {Saccharomyces cerevisiae}
Length = 100
Score = 103 bits (259), Expect = 1e-28
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 113 KHKLKLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNNHLIADNLKWFTDLKPGVTN 172
K K+ +A+TCK C TR+SH +SK +YEKG V++ C C HLIAD+LK F D
Sbjct: 7 KPKMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHH---VT 63
Query: 173 IEHILAEKGEQGCKG 187
+E ++ GEQ +
Sbjct: 64 VEQLMKANGEQVSQD 78
Score = 51.6 bits (123), Expect = 6e-09
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 220 SHHLIADNLKWFSDLKPGVTNIEHILAEKGEQVRRIDSNGAIELIEDE 267
HLIAD+LK F D +E ++ GEQV + + E I D
Sbjct: 46 VRHLIADHLKIFHDHH---VTVEQLMKANGEQVSQDVGDLEFEDIPDS 90
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 43.1 bits (101), Expect = 3e-05
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 99 LISKHSYEKGVIKLKHKLKLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGCS---NNHL 155
++++ S +K + L + TC C ++ + +G V+ C C ++ L
Sbjct: 1 MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIV--ERFSEGDVV--CALCGLVLSDKL 56
Query: 156 IADNLKW--FTD 165
+ +W F++
Sbjct: 57 VDTRSEWRTFSN 68
Score = 37.7 bits (87), Expect = 0.002
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 15/73 (20%)
Query: 66 TRNSTPGNPEPIQLEHKLKLAYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVC 125
TR S + L TC C ++ + +G + C +C
Sbjct: 3 TRESIDKRAGRRGPNLNIVL--TCPECKVYPPKIV--ERFSEGDV----------VCALC 48
Query: 126 GT-RNSHLISKHS 137
G + L+ S
Sbjct: 49 GLVLSDKLVDTRS 61
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 35.2 bits (82), Expect = 0.002
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 20/56 (35%)
Query: 87 YTCKVCG---TRNSHLIS---KHSYEKGVIKLKHKLKLAYTCKVCG---TRNSHLI 133
+ C+VC R HL H+ EK Y C +C TR LI
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK-----------PYPCGLCNRAFTRRDLLI 47
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.002
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 54 ELKKRANLLKFYTRNSTPG 72
LKK LK Y +S P
Sbjct: 21 ALKKLQASLKLYADDSAPA 39
Score = 29.1 bits (64), Expect = 0.86
Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
Query: 106 EKGVIK-LKHKLKLAY 120
EK +K L+ LKL Y
Sbjct: 18 EKQALKKLQASLKL-Y 32
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 33.2 bits (77), Expect = 0.011
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 21/60 (35%)
Query: 86 AYTCKVCG---TRNSHLIS---KHSYEKGVIKLKHKLKLAYTCKVCG---TRNSHLISKH 136
++ CK+CG R+S L + HS + Y C+ CG + S + KH
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTR-----------PYPCQYCGKRFHQKSDMK-KH 48
Score = 32.0 bits (74), Expect = 0.035
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 20/56 (35%)
Query: 87 YTCKVCG---TRNSHLISK---HSYEKGVIKLKHKLKLAYTCKVCG---TRNSHLI 133
Y C+ CG + S + H+ EK + C+VCG +++S+LI
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEK-----------PHKCQVCGKAFSQSSNLI 74
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 32.4 bits (75), Expect = 0.031
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 23/66 (34%)
Query: 87 YTCKVCG---TRNSHLIS---KHSYEKGVIKLKHKLKLAYTCKVCG---TRNSHLIS--- 134
+ CK CG T++ +L+ H+ E+ YTC +C R HL
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDER-----------PYTCDICHKAFRRQDHLRDHRY 66
Query: 135 KHSYEK 140
HS EK
Sbjct: 67 IHSKEK 72
Score = 32.0 bits (74), Expect = 0.047
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 20/56 (35%)
Query: 87 YTCKVCG---TRNSHLIS---KHSYEKGVIKLKHKLKLAYTCKVCG---TRNSHLI 133
YTC +C R HL HS EK + C+ CG ++ L
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEK-----------PFKCQECGKGFCQSRTLA 90
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 32.5 bits (75), Expect = 0.033
Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 20/56 (35%)
Query: 87 YTCKVCG---TRNSHLIS---KHSYEKGVIKLKHKLKLAYTCKVCG---TRNSHLI 133
C++CG HL HS EK Y+C VCG R +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEK-----------PYSCPVCGLRFKRKDRMS 52
Score = 29.4 bits (67), Expect = 0.35
Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 18/57 (31%)
Query: 87 YTCKVCG---TRNSHLIS---KHSYEKGVIKLKHKLKLAYTCKVCG---TRNSHLIS 134
Y+C VCG R + H G K Y C+ CG +R HL
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVG----KP-----YICQSCGKGFSRPDHLNG 83
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 33.6 bits (78), Expect = 0.034
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 20/57 (35%)
Query: 87 YTCKVCG---TRNSHLIS---KHSYEKGVIKLKHKLKLAYTCKVCG---TRNSHLIS 134
Y C CG ++ +HL + H+ EK Y C CG +R +L +
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEK-----------PYKCPECGKSFSREDNLHT 151
Score = 33.6 bits (78), Expect = 0.036
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 23/66 (34%)
Query: 87 YTCKVCG---TRNSHLIS---KHSYEKGVIKLKHKLKLAYTCKVCG---TRNSHLIS--- 134
Y C CG ++ ++L + H+ EK Y C CG ++ +HL +
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEK-----------PYACPECGKSFSQLAHLRAHQR 126
Query: 135 KHSYEK 140
H+ EK
Sbjct: 127 THTGEK 132
Score = 33.2 bits (77), Expect = 0.045
Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 20/57 (35%)
Query: 87 YTCKVCG---TRNSHLIS---KHSYEKGVIKLKHKLKLAYTCKVCG---TRNSHLIS 134
Y C CG +R+ HL H+ EK Y C CG + L
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEK-----------PYKCPECGKSFSDKKDLTR 67
Score = 32.8 bits (76), Expect = 0.059
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 20/57 (35%)
Query: 87 YTCKVCG---TRNSHLIS---KHSYEKGVIKLKHKLKLAYTCKVCG---TRNSHLIS 134
Y C CG + L H+ EK Y C CG ++ ++L +
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEK-----------PYKCPECGKSFSQRANLRA 95
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 31.4 bits (72), Expect = 0.042
Identities = 14/59 (23%), Positives = 18/59 (30%), Gaps = 22/59 (37%)
Query: 87 YTCKVCG---TRNSHL-----ISKHSYEKGVIKLKHKLKLAYTCKVCG---TRNSHLIS 134
Y CKVC T S+ S K Y C C TR ++ +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVK-----------VYPCPFCFKEFTRKDNMTA 58
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 32.0 bits (74), Expect = 0.048
Identities = 14/64 (21%), Positives = 17/64 (26%), Gaps = 21/64 (32%)
Query: 87 YTCKVCG---TRNSHLIS---KHSYEKGVIKLKHKLKLAYTCKVCG---TRNSHLISK-H 136
Y C VCG HL+ H+ K Y C +C
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIK-----------PYECNICAKRFMWRDSFHRHVT 86
Query: 137 SYEK 140
S K
Sbjct: 87 SCTK 90
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 31.6 bits (73), Expect = 0.060
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 23/66 (34%)
Query: 87 YTCKVCG---TRNSHLIS---KHSYEKGVIKLKHKLKLAYTCKVCG---TRNSHLIS--- 134
+ C+VCG +R L + H+ K Y CK C +S L
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVK-----------PYKCKTCDYAAADSSSLNKHLR 57
Query: 135 KHSYEK 140
HS E+
Sbjct: 58 IHSDER 63
Score = 31.2 bits (72), Expect = 0.089
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 20/56 (35%)
Query: 87 YTCKVCG---TRNSHLIS---KHSYEKGVIKLKHKLKLAYTCKVCG---TRNSHLI 133
Y CK C +S L HS E+ + C++C +S L
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDER-----------PFKCQICPYASRNSSQLT 81
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 31.3 bits (72), Expect = 0.068
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 20/57 (35%)
Query: 87 YTCKVCG---TRNSHLIS---KHSYEKGVIKLKHKLKLAYTCKVCG---TRNSHLIS 134
+ C++C +R+ HL + H+ EK + C +CG R+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEK-----------PFACDICGRKFARSDERKR 49
Score = 27.8 bits (63), Expect = 1.2
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 15/52 (28%)
Query: 87 YTCKVCG---TRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCG---TRNSHL 132
+ C +CG R+ +H + + ++N HL
Sbjct: 32 FACDICGRKFARSDERK-RH-------RDIQHIL-PILEDKVEELLSKNYHL 74
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 31.3 bits (72), Expect = 0.074
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 21/59 (35%)
Query: 87 YTCKVCG---TRNSHLIS---KHSYEKGVIKLKHKLKLAYTCKVCG---TRNSHLISKH 136
+ C++C +R+ HL + H+ EK + C +CG R+ +H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEK-----------PFACDICGRKFARSDERK-RH 81
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 31.7 bits (73), Expect = 0.077
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 20/57 (35%)
Query: 87 YTCKVCG---TRNSHLIS---KHSYEKGVIKLKHKLKLAYTCKVCG---TRNSHLIS 134
C C +L KH+ EK + C CG R +L+
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEK-----------PFECPKCGKCYFRKENLLE 53
Score = 31.7 bits (73), Expect = 0.094
Identities = 13/57 (22%), Positives = 16/57 (28%), Gaps = 20/57 (35%)
Query: 87 YTCKVCG---TRNSHLIS---KHSYEKGVIKLKHKLKLAYTCKVCG---TRNSHLIS 134
+TC VC R L H+ E Y C C + L S
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEM-----------PYKCSSCSQQFMQKKDLQS 112
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 29.1 bits (66), Expect = 0.20
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 18/47 (38%)
Query: 87 YTCKVCG---TRNSHLIS----KHSYEKGVIKLKHKLKLAYTCKVCG 126
Y C+ CG +R HL H+ E+ + C+V
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSER-----------PHKCQVWV 48
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 29.4 bits (67), Expect = 0.33
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 17/53 (32%)
Query: 80 EHKLKLAYTCKVCG---TRNSHLIS---KHSYEKGVIKLKHKLKLAYTCKVCG 126
+ + A+ C CG TR + + + G + G
Sbjct: 41 PNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG-----------VEGENSG 82
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 27.5 bits (62), Expect = 1.4
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 22/67 (32%)
Query: 87 YTCKVCG---TRNSHL---ISKHSYEKGVIKLKHKLKLAYTCKVCG---TRNSHLIS--- 134
Y C +C T++ + I + E + C C R S L
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTE------NVA---KFHCPHCDTVIARKSDLGVHLR 66
Query: 135 -KHSYEK 140
+HSY
Sbjct: 67 KQHSYSG 73
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 27.4 bits (61), Expect = 1.4
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 21/67 (31%)
Query: 87 YTCKVCG---TRNSHLIS---KHSYEKGVIKLKHKLKLAYTCKVCGTR-------NSHLI 133
C++CG + + L KH+ ++ + C+ CG R +H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALR--------FPCEFCGKRFEKPDSVAAHRS 59
Query: 134 SKHSYEK 140
H
Sbjct: 60 KSHPALL 66
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 28.3 bits (62), Expect = 2.3
Identities = 14/101 (13%), Positives = 33/101 (32%), Gaps = 14/101 (13%)
Query: 56 KKRANLLKFYTRNSTPGNPEPIQLEHKLKLAYTCKVCGTRNSHLISKHSYEKGVIKLKHK 115
N F + + +C+ C + + +K + ++
Sbjct: 82 HILKNTDGFEINQTDAKGRK--------TTRPSCRECRKNIDGVKLSSTEKKKMDEIAPP 133
Query: 116 LKLAYTCKVCGTR-----NSHLISKHSYEKG-VVIVKCEGC 150
+TC +C R ++L+ H+++ G C+ C
Sbjct: 134 KGSVFTCPICEKRSIVGVTANLVHDHNHDTGWGREWICDSC 174
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger,
ADP-ribosylating toxin, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: g.41.17.1
Length = 83
Score = 26.7 bits (59), Expect = 2.7
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 120 YTCKVCGTRNSHLISKHSYEKGVVIVKCEGCS 151
Y C CG ++ I+K E G + C CS
Sbjct: 31 YPCP-CG--DNFAITKEDLENGEDVATCPSCS 59
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3,
hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Length = 120
Score = 27.3 bits (60), Expect = 2.8
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 18/100 (18%)
Query: 48 YGLSHSELKKRANLLKFYTRNSTPGNPEPIQLEHKLKLAY-----TCKVCGTRNSHLISK 102
+ L+ + +L K Y + IQ + K+K+ CK C ++ LI
Sbjct: 27 FTLAERVARYSPDLAKRYVELA-----LEIQKKAKVKIPRKWKRRYCKRC---HTFLIP- 77
Query: 103 HSYEKGVIKLKHKLK--LAYTCKVCGTRNSHLISKHSYEK 140
++L+ K + TC CG + + +K
Sbjct: 78 --GVNARVRLRTKRMPHVVITCLECGYIMRYPYLREVKQK 115
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 27.1 bits (61), Expect = 3.4
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 22/59 (37%)
Query: 87 YTCKVCG---TRNSHLIS---KHSYEKGVIKLKHKLKLAYTCKV--CG---TRNSHLIS 134
+ CK C +R+ HL + H+ EK ++C+ C R+ L+
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEK-----------PFSCRWPSCQKKFARSDELVR 114
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 26.7 bits (58), Expect = 4.6
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 9/67 (13%)
Query: 81 HKLKLAYTCKVCGTRNSHLISKHSYEKGVIKLKHKLKLAYTCKVCGTR-------NSHLI 133
H + + K S + + K + C CG + H+I
Sbjct: 44 HYRDDNHETDNNNPKRWSKPRKRSLLEM--EGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Query: 134 SKHSYEK 140
Y+K
Sbjct: 102 KTKHYQK 108
>2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like
fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP:
a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X*
Length = 746
Score = 27.2 bits (59), Expect = 6.5
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 213 LIRETHGSHHLIADNLKWFSDLKPGVTNI--EHILAE 247
+ + S +NL F D G+T I + +
Sbjct: 374 AFQNSSKSIDFFLNNLTTFIDN--GLTEIAISDLPYD 408
>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting),
transit peptide, F1FO ATP synthase, ATP phosphorylase;
3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H
Length = 168
Score = 26.5 bits (58), Expect = 7.7
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 244 ILAEKGEQVRRIDSNGAIELIEDEKKLLS 272
+LAE+ + +D A +E + L
Sbjct: 114 LLAEEAVTLDMLDLGAAKANLEKAQSELL 142
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear
protein, receptor, transcription regulation, zinc, EAR3,
erbal3 tfcoup1; NMR {Homo sapiens}
Length = 89
Score = 25.3 bits (56), Expect = 7.8
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 8/30 (26%)
Query: 122 CKVCGTRNSHLISKHSYEKGVVIVKCEGCS 151
C VCG ++S KH Y G CEGC
Sbjct: 10 CVVCGDKSS---GKH-Y--GQ--FTCEGCK 31
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A
{Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J
1bsh_A 1bsn_A 1fs0_E 3oaa_H*
Length = 138
Score = 26.1 bits (58), Expect = 8.0
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 244 ILAEKGEQVRRIDSNGAIELIEDEKKLLS 272
+LA+ + + +D A+E ++ +S
Sbjct: 78 VLADTAIRGQDLDEARAMEAKRKAEEHIS 106
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function,
zinc finger, metal-binding protein, structural genomics;
NMR {Mus musculus} SCOP: g.41.3.4
Length = 85
Score = 25.4 bits (55), Expect = 8.5
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 111 KLKHKLKLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGC 150
K+ L+ +TC C S K + ++ C C
Sbjct: 15 KMTGTLETQFTCPFCNHEKS-CDVKMDRARNTGVISCTVC 53
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_m 1ysh_D 2zkr_z
Length = 92
Score = 25.6 bits (56), Expect = 8.7
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 107 KGVIKLKHKLKLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGC 150
K + K++ Y C+ CG K V I C+ C
Sbjct: 24 KQIKKMEVSQHSKYFCEFCGK-------FAVKRKAVGIWGCKDC 60
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 25.5 bits (55), Expect = 9.1
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 78 QLEHKLKLAYTCKVC--GTRNSHLISKHSYEKGVIKLKH---KLKLAYTCKVCG--TRNS 130
Q K++ Y CK C T + ++ + H + +H L +Y C C T+
Sbjct: 10 QQNKKVEGGYECKYCTFQTPDLNMFTFH------VDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 131 HLISKH 136
+S+H
Sbjct: 64 DALSEH 69
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain,
nuclear; zinc finger; 2.00A {Homo sapiens}
Length = 78
Score = 24.9 bits (55), Expect = 9.1
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 8/30 (26%)
Query: 122 CKVCGTRNSHLISKHSYEKGVVIVKCEGCS 151
C +CG R + KH Y G C+GC
Sbjct: 3 CAICGDRAT---GKH-Y--GA--SSCDGCK 24
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate
utilization, alkylphosphonate uptake; 1.40A {Escherichia
coli} PDB: 3p2u_A
Length = 258
Score = 26.5 bits (59), Expect = 9.5
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 209 CLCHLIRETHGSHHLIADNLKWFSDLKPG---VTNIEH 243
C + +H + L ++ +T+I H
Sbjct: 188 CSHPPRADAPRNHCDLNTVLALNQVIRSPRVILTHISH 225
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.419
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,184,231
Number of extensions: 245200
Number of successful extensions: 732
Number of sequences better than 10.0: 1
Number of HSP's gapped: 675
Number of HSP's successfully gapped: 74
Length of query: 272
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 180
Effective length of database: 4,133,061
Effective search space: 743950980
Effective search space used: 743950980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)