RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13378
         (272 letters)



>d1s55a1 b.22.1.1 (A:161-316) TRANCE/RANKL cytokine {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 156

 Score = 27.3 bits (60), Expect = 1.5
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 5/72 (6%)

Query: 42  SKLCYDYGLSHSELKKRANLLKFYTRNSTPGNPEPIQLEHKLKLAYTCKVCGTRNSHLIS 101
           + +C+ +  +   +      L  Y   ++   P    L   +K   T     + NS    
Sbjct: 57  ANICFRHHETSGSVPTDYLQLMVYVVKTSIKIPSSHNL---MKGGSTK--NWSGNSEFHF 111

Query: 102 KHSYEKGVIKLK 113
                 G  KL+
Sbjct: 112 YSINVGGFFKLR 123


>d2ebfx2 c.150.1.2 (X:875-1093) Dermonecrotic toxin, ToxA
           {Pasteurella multocida [TaxId: 747]}
          Length = 219

 Score = 27.2 bits (60), Expect = 1.9
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 8/49 (16%)

Query: 206 IETCLCH----LIRETHGSHHLIADNLKWFSDLKPGVTNI--EHILAEK 248
           IE C+        + +  S     +NL  F D   G+T I    +  + 
Sbjct: 28  IEKCMNTYRGVAFQNSSKSIDFFLNNLTTFID--NGLTEIAISDLPYDI 74


>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 82

 Score = 25.5 bits (56), Expect = 2.3
 Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 3/34 (8%)

Query: 118 LAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGCS 151
             Y C  CG  +   I      +G  +  C  CS
Sbjct: 21  FTYPCP-CG--DRFQIYLDDMFEGEKVAVCPSCS 51


>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 70

 Score = 24.6 bits (54), Expect = 3.4
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%)

Query: 120 YTCKVCGTRNSHLISKHSYEKGVVIVKCEGCS 151
           Y C  CG  ++  I+K   E G  +  C  CS
Sbjct: 24  YPCP-CG--DNFAITKEDLENGEDVATCPSCS 52


>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula
           marismortui [TaxId: 2238]}
          Length = 73

 Score = 24.2 bits (53), Expect = 5.3
 Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 7/44 (15%)

Query: 107 KGVIKLKHKLKLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGC 150
             V  ++ K K  + C VCG        K     G  I  C  C
Sbjct: 15  VRVADVEIKHKKKHKCPVCG-------FKKLKRAGTGIWMCGHC 51


>d1gyoa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio gigas,
           di-tetraheme cytochrome c3 [TaxId: 879]}
          Length = 106

 Score = 25.1 bits (54), Expect = 5.5
 Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 16/79 (20%)

Query: 107 KGVIKLKHKLKLAYTCKVCGTRNSHLISKHSYEKGVVIVKCEGCSNNHLIADNLKWFTDL 166
            G +++ H      +C  C     H    H ++      KC  C  +       +     
Sbjct: 21  FGKVEMSHAKHRNVSCVSC-----H----HMFDGCGDFQKCADCHID-------RDDRSY 64

Query: 167 KPGVTNIEHILAEKGEQGC 185
           + G     H  +E   +GC
Sbjct: 65  ERGFYKAWHSESEISCRGC 83


>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding
           domain {Escherichia coli [TaxId: 562]}
          Length = 71

 Score = 24.3 bits (53), Expect = 5.5
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 224 IADNLKWFSDLKPGVTNIEHILAEKGEQVRRIDSNGAIELIEDE 267
           IA  L + S            LA KG       ++  I L+++E
Sbjct: 30  IAQRLGFRS--PNAAEEHLKALARKGVIEIVSGASRGIRLLQEE 71


>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
           Saccharomyces cerevisiae sequence}
          Length = 29

 Score = 22.6 bits (49), Expect = 8.7
 Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 6/27 (22%)

Query: 87  YTCKVCG---TRNSHLIS---KHSYEK 107
           + C+VC     R  HL      H+ EK
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEK 29



 Score = 22.6 bits (49), Expect = 8.7
 Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 6/27 (22%)

Query: 120 YTCKVCG---TRNSHLIS---KHSYEK 140
           + C+VC     R  HL      H+ EK
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEK 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0734    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,036,532
Number of extensions: 48101
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 20
Length of query: 272
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,254,276
Effective search space: 235803888
Effective search space used: 235803888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.8 bits)