BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13379
(828 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M4M|A Chain A, Mouse Survivin
Length = 140
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 32/53 (60%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P++MA+AGF H P+ D A CF C L WEP D P EH +HSP C F+
Sbjct: 35 PERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDNPIEEHRKHSPGCAFL 87
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 247 RRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
R TF WP ++ P++MA+AGF H P+ D A CF
Sbjct: 18 RIATFKNWPFLEDCACTPERMAEAGFIHCPTENEPDLAQCF 58
>pdb|3UEI|A Chain A, Crystal Structure Of Human Survivin E65a Mutant
pdb|3UEI|B Chain B, Crystal Structure Of Human Survivin E65a Mutant
Length = 146
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P++MA+AGF H P+ D A CF C L WEP D+P EH++HS C F+
Sbjct: 39 PERMAEAGFIHCPTENEPDLAQCFFCFKELAGWEPDDDPIEEHKKHSSGCAFL 91
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 242 FSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
F + R TF WP ++ P++MA+AGF H P+ D A CF
Sbjct: 17 FLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCF 62
>pdb|3UEE|A Chain A, Crystal Structure Of Human Survivin K62a Mutant Bound To
N-Terminal Histone H3
pdb|3UEE|C Chain C, Crystal Structure Of Human Survivin K62a Mutant Bound To
N-Terminal Histone H3
pdb|3UEG|A Chain A, Crystal Structure Of Human Survivin K62a Mutant
pdb|3UEG|B Chain B, Crystal Structure Of Human Survivin K62a Mutant
Length = 146
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P++MA+AGF H P+ D A CF C L WEP D+P EH++HS C F+
Sbjct: 39 PERMAEAGFIHCPTENEPDLAQCFFCFAELEGWEPDDDPIEEHKKHSSGCAFL 91
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 242 FSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
F + R TF WP ++ P++MA+AGF H P+ D A CF
Sbjct: 17 FLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCF 62
>pdb|1F3H|A Chain A, X-Ray Crystal Structure Of The Human Anti-Apoptotic
Protein Survivin
pdb|1F3H|B Chain B, X-Ray Crystal Structure Of The Human Anti-Apoptotic
Protein Survivin
Length = 142
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P++MA+AGF H P+ D A CF C L WEP D+P EH++HS C F+
Sbjct: 35 PERMAEAGFIHCPTENEPDMAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFL 87
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 242 FSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
F + R TF WP ++ P++MA+AGF H P+ D A CF
Sbjct: 13 FLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDMAQCF 58
>pdb|3UIG|A Chain A, Crystal Structure Of Human Survivin In Complex With T3
Phosphorylated H3(1-15) Peptide
pdb|3UIG|B Chain B, Crystal Structure Of Human Survivin In Complex With T3
Phosphorylated H3(1-15) Peptide
pdb|3UIH|A Chain A, Crystal Structure Of Human Survivin In Complex With
SmacDIABLO(1-15) Peptide
pdb|3UIH|B Chain B, Crystal Structure Of Human Survivin In Complex With
SmacDIABLO(1-15) Peptide
pdb|3UII|A Chain A, Crystal Structure Of Human Survivin In Complex With
H3(1-10) Peptide
pdb|3UII|B Chain B, Crystal Structure Of Human Survivin In Complex With
H3(1-10) Peptide
Length = 143
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P++MA+AGF H P+ D A CF C L WEP D+P EH++HS C F+
Sbjct: 36 PERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFL 88
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 242 FSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
F + R TF WP ++ P++MA+AGF H P+ D A CF
Sbjct: 14 FLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCF 59
>pdb|3UEC|A Chain A, Crystal Structure Of Human Survivin Bound To Histone H3
Phosphorylated On Threonine-3.
pdb|3UED|A Chain A, Crystal Structure Of Human Survivin Bound To Histone H3
Phosphorylated On Threonine-3 (C2 Space Group).
pdb|3UED|C Chain C, Crystal Structure Of Human Survivin Bound To Histone H3
Phosphorylated On Threonine-3 (C2 Space Group).
pdb|3UEF|A Chain A, Crystal Structure Of Human Survivin Bound To Histone H3
(C2 Space Group).
pdb|3UEF|C Chain C, Crystal Structure Of Human Survivin Bound To Histone H3
(C2 Space Group)
Length = 146
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P++MA+AGF H P+ D A CF C L WEP D+P EH++HS C F+
Sbjct: 39 PERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFL 91
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 242 FSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
F + R TF WP ++ P++MA+AGF H P+ D A CF
Sbjct: 17 FLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCF 62
>pdb|2RAW|A Chain A, Crystal Structure Of The Borealin-survivin Complex
Length = 145
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P++MA+AGF H P+ D A CF C L WEP D+P EH++HS C F+
Sbjct: 38 PERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFL 90
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 242 FSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
F + R TF WP ++ P++MA+AGF H P+ D A CF
Sbjct: 16 FLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCF 61
>pdb|1E31|A Chain A, Survivin Dimer H. Sapiens
pdb|1E31|B Chain B, Survivin Dimer H. Sapiens
pdb|2QFA|A Chain A, Crystal Structure Of A Survivin-Borealin-Incenp Core
Complex
pdb|4A0I|A Chain A, Crystal Structure Of Survivin Bound To The N-Terminal Tail
Of Hsgo1
pdb|4A0I|B Chain B, Crystal Structure Of Survivin Bound To The N-Terminal Tail
Of Hsgo1
pdb|4A0J|A Chain A, Crystal Structure Of Survivin Bound To The Phosphorylated
N- Terminal Tail Of Histone H3
pdb|4A0J|B Chain B, Crystal Structure Of Survivin Bound To The Phosphorylated
N- Terminal Tail Of Histone H3
pdb|4A0N|A Chain A, Crystal Structure Of Survivin Bound To The Phosphorylated
N- Terminal Tail Of Histone H3
Length = 142
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P++MA+AGF H P+ D A CF C L WEP D+P EH++HS C F+
Sbjct: 35 PERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFL 87
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 242 FSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
F + R TF WP ++ P++MA+AGF H P+ D A CF
Sbjct: 13 FLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCF 58
>pdb|2RAX|A Chain A, Crystal Structure Of Borealin (20-78) Bound To Survivin
(1-120)
pdb|2RAX|E Chain E, Crystal Structure Of Borealin (20-78) Bound To Survivin
(1-120)
pdb|2RAX|X Chain X, Crystal Structure Of Borealin (20-78) Bound To Survivin
(1-120)
Length = 123
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P++MA+AGF H P+ D A CF C L WEP D+P EH++HS C F+
Sbjct: 38 PERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFL 90
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 242 FSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
F + R TF WP ++ P++MA+AGF H P+ D A CF
Sbjct: 16 FLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCF 61
>pdb|1XOX|A Chain A, Solution Structure Of Human Survivin
pdb|1XOX|B Chain B, Solution Structure Of Human Survivin
Length = 117
Score = 59.3 bits (142), Expect = 9e-09, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P++MA+AGF H P+ D A CF C L WEP D+P EH++HS C F+
Sbjct: 35 PERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFL 87
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 242 FSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
F + R TF WP ++ P++MA+AGF H P+ D A CF
Sbjct: 13 FLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCF 58
>pdb|3SIQ|A Chain A, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
pdb|3SIQ|B Chain B, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
pdb|3SIQ|C Chain C, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
pdb|3SIQ|D Chain D, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
pdb|3SIQ|E Chain E, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
pdb|3SIQ|F Chain F, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
Length = 136
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 363 WALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFVKGEY 422
W Q+AQ G Y +G D+ CF C V + WE D+P EH+R SP CP ++
Sbjct: 51 WLDKRQLAQTGMYFTHAG---DKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRRT 107
Query: 423 TQNVPLS 429
T NVP++
Sbjct: 108 TNNVPIN 114
>pdb|1SDZ|A Chain A, Crystal Structure Of Diap1 Bir1 Bound To A Reaper Peptide
pdb|1SE0|A Chain A, Crystal Structure Of Diap1 Bir1 Bound To A Grim Peptide
Length = 116
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 363 WALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFVKGEY 422
W Q+AQ G Y +G D+ CF C V + WE D+P EH+R SP CP ++
Sbjct: 29 WLDKRQLAQTGMYFTHAG---DKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRRT 85
Query: 423 TQNVPLSV 430
T NVP++
Sbjct: 86 TNNVPINA 93
>pdb|3SIP|E Chain E, Crystal Structure Of Drice And Diap1-Bir1 Complex
pdb|3SIP|F Chain F, Crystal Structure Of Drice And Diap1-Bir1 Complex
Length = 115
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 363 WALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFVKGEY 422
W Q+AQ G Y +G D+ CF C V + WE D+P EH+R SP CP ++
Sbjct: 28 WLDKRQLAQTGMYFTHAG---DKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRRT 84
Query: 423 TQNVPLSV 430
T NVP++
Sbjct: 85 TNNVPINA 92
>pdb|3UW4|A Chain A, Crystal Structure Of Ciap1 Bir3 Bound To Gdc0152
Length = 92
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPF---VKG-E 421
P+Q+A AGFY+ G DD CF+C L CWE D+PW EH + P C F +KG E
Sbjct: 25 PEQLAAAGFYY--VGRNDD-VKCFSCDGGLRCWESGDDPWVEHAKWFPGCEFLIRMKGQE 81
Query: 422 YTQNVPLS 429
Y N+ L+
Sbjct: 82 YINNIHLT 89
>pdb|3UIJ|A Chain A, Crystal Structure Of Human Survivin K62yH80W MUTANT IN
COMPLEX WITH SmacDIABLO(1-15) Peptide
pdb|3UIJ|B Chain B, Crystal Structure Of Human Survivin K62yH80W MUTANT IN
COMPLEX WITH SmacDIABLO(1-15) Peptide
pdb|3UIK|A Chain A, Crystal Structure Of Human Survivin Mutant K62yH80W IN
COMPLEX WITH H3(1-10) Peptide
pdb|3UIK|B Chain B, Crystal Structure Of Human Survivin Mutant K62yH80W IN
COMPLEX WITH H3(1-10) Peptide
Length = 143
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P++MA+AGF H P+ D A CF C L WEP D+P EH++ S C F+
Sbjct: 36 PERMAEAGFIHCPTENEPDLAQCFFCFYELEGWEPDDDPIEEHKKWSSGCAFL 88
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 242 FSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCFTILWAL 293
F + R TF WP ++ P++MA+AGF H P+ D A CF + L
Sbjct: 14 FLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFYEL 65
>pdb|3UEH|A Chain A, Crystal Structure Of Human Survivin H80a Mutant
pdb|3UEH|B Chain B, Crystal Structure Of Human Survivin H80a Mutant
Length = 146
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P++MA+AGF H P+ D A CF C L WEP D+P EH++ S C F+
Sbjct: 39 PERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKASSGCAFL 91
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 242 FSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
F + R TF WP ++ P++MA+AGF H P+ D A CF
Sbjct: 17 FLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCF 62
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P+Q+A AGFY+ G DD CF+C L CWE D+PW EH + P C F+
Sbjct: 24 PEQLASAGFYY--VGRNDD-VKCFSCDGGLRCWESGDDPWVEHAKWFPRCEFL 73
>pdb|4HY4|A Chain A, Crystal Structure Of Ciap1 Bir3 Bound To T3170284
pdb|4HY4|B Chain B, Crystal Structure Of Ciap1 Bir3 Bound To T3170284
pdb|4HY5|A Chain A, Crystal Structure Of Ciap1 Bir3 Bound To T3256336
pdb|4HY5|B Chain B, Crystal Structure Of Ciap1 Bir3 Bound To T3256336
Length = 115
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P+Q+A AGFY+ G DD CF C L CWE D+PW EH + P C F+
Sbjct: 50 PEQLASAGFYY--VGRNDD-VKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFL 99
>pdb|3D9T|A Chain A, Ciap1-Bir3 In Complex With N-Terminal Peptide From
Caspase- 9 (Atpfqe)
pdb|3D9T|B Chain B, Ciap1-Bir3 In Complex With N-Terminal Peptide From
Caspase- 9 (Atpfqe)
pdb|3D9U|A Chain A, The Bir3 Domain Of Ciap1 In Complex With The N Terminal
Peptide From SmacDIABLO (AVPIAQ)
Length = 97
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P+Q+A AGFY+ G DD CF C L CWE D+PW EH + P C F+
Sbjct: 32 PEQLASAGFYY--VGRNDD-VKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFL 81
>pdb|1QBH|A Chain A, Solution Structure Of A Baculoviral Inhibitor Of Apoptosis
(Iap) Repeat
Length = 101
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P+Q+A AGFY+ G DD CF C L CWE D+PW EH + P C F+
Sbjct: 25 PEQLASAGFYY--VGRNDD-VKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFL 74
>pdb|1C9Q|A Chain A, Average Nmr Solution Structure Of The Bir-2 Domain Of Xiap
Length = 117
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFVKG 420
P ++A AG Y+ +G GD + CF C L WEP D W+EH RH P C FV G
Sbjct: 58 PRELASAGLYY--TGIGD-QVQCFACGGKLKNWEPGDRAWSEHRRHFPNCFFVLG 109
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 241 MFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCFT 288
M+SE AR ++F WP DY P ++A AG Y+ +G G D+ CF
Sbjct: 37 MYSEEARLKSFQNWP--DYAHLTPRELASAGLYY--TGIG-DQVQCFA 79
>pdb|1I3O|E Chain E, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase
3
pdb|1I3O|F Chain F, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase
3
Length = 121
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFVKGE 421
P ++A AG Y+ +G GD + CF C L WEP D W+EH RH P C FV G
Sbjct: 62 PRELASAGLYY--TGIGD-QVQCFACGGKLKNWEPGDRAWSEHRRHFPNCFFVLGR 114
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 241 MFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCFT 288
M+SE AR ++F WP DY P ++A AG Y+ +G G D+ CF
Sbjct: 41 MYSEEARLKSFQNWP--DYAHLTPRELASAGLYY--TGIG-DQVQCFA 83
>pdb|1I4O|C Chain C, Crystal Structure Of The XiapCASPASE-7 Complex
pdb|1I4O|D Chain D, Crystal Structure Of The XiapCASPASE-7 Complex
Length = 141
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFVKGE 421
P ++A AG Y+ +G GD + CF C L WEP D W+EH RH P C FV G
Sbjct: 62 PRELASAGLYY--TGIGD-QVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFVLGR 114
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 241 MFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
M+SE AR ++F WP DY P ++A AG Y+ +G G D+ CF
Sbjct: 41 MYSEEARLKSFQNWP--DYAHLTPRELASAGLYY--TGIG-DQVQCF 82
>pdb|2UVL|A Chain A, Human Bir3 Domain Of Baculoviral Inhibitor Of Apoptosis
Repeat-Containing 3 (Birc3)
pdb|2UVL|B Chain B, Human Bir3 Domain Of Baculoviral Inhibitor Of Apoptosis
Repeat-Containing 3 (Birc3)
Length = 96
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPF---VKGE 421
P+Q+A AGFY+ G DD CF C L CWE D+PW +H + P C + +KG+
Sbjct: 32 PEQLASAGFYY--VGNSDD-VKCFCCDGGLRCWESGDDPWVQHAKWFPRCEYLIRIKGQ 87
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 241 MFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
M + AAR +TF WP P+Q+A AGFY+ + D CF
Sbjct: 11 MQTHAARFKTFFNWP--SSVLVNPEQLASAGFYYVGNS---DDVKCF 52
>pdb|3MUP|A Chain A, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac037
pdb|3MUP|B Chain B, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac037
pdb|3MUP|C Chain C, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac037
pdb|3MUP|D Chain D, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac037
pdb|3OZ1|A Chain A, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac066
pdb|3OZ1|B Chain B, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac066
pdb|3OZ1|C Chain C, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac066
pdb|3OZ1|D Chain D, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac066
pdb|4EB9|A Chain A, Ciap1-Bir3 In Complex With A Divalent Smac Mimetic
pdb|4EB9|B Chain B, Ciap1-Bir3 In Complex With A Divalent Smac Mimetic
pdb|4EB9|C Chain C, Ciap1-Bir3 In Complex With A Divalent Smac Mimetic
pdb|4EB9|D Chain D, Ciap1-Bir3 In Complex With A Divalent Smac Mimetic
Length = 122
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P+Q+A AGFY+ G DD CF C L CWE D+PW EH + P C F+
Sbjct: 38 PEQLASAGFYY--VGRNDD-VKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFL 87
>pdb|1KMC|C Chain C, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
pdb|1KMC|D Chain D, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
Length = 119
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFVKG 420
P ++A AG Y+ +G GD + CF C L WEP D W+EH RH P C FV G
Sbjct: 58 PRELASAGLYY--TGIGD-QVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFVLG 109
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 241 MFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
M+ E AR ++F WP DY P ++A AG Y+ +G G D+ CF
Sbjct: 37 MYCEEARLKSFQNWP--DYAHLTPRELASAGLYY--TGIG-DQVQCF 78
>pdb|1I51|E Chain E, Crystal Structure Of Caspase-7 Complexed With Xiap
pdb|1I51|F Chain F, Crystal Structure Of Caspase-7 Complexed With Xiap
Length = 117
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFVKGE 421
P ++A AG Y+ +G GD + CF C L WEP D W+EH RH P C FV G
Sbjct: 58 PRELASAGLYY--TGIGD-QVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFVLGR 110
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 241 MFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
M+ E AR ++F WP DY P ++A AG Y+ +G G D+ CF
Sbjct: 37 MYCEEARLKSFQNWP--DYAHLTPRELASAGLYY--TGIG-DQVQCF 78
>pdb|3HL5|A Chain A, Crystal Structure Of Xiap Bir3 With Cs3
pdb|3HL5|B Chain B, Crystal Structure Of Xiap Bir3 With Cs3
Length = 95
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 367 DQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV---KG-EY 422
+Q+A+AGFY G D+ CF C L W+P+++PW +H + P C ++ KG EY
Sbjct: 31 EQLARAGFYALGEG---DKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEY 87
Query: 423 TQNVPLS 429
N+ L+
Sbjct: 88 INNIHLT 94
>pdb|1TW6|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A 9MER PEPTIDE
DERIVED From Smac
pdb|1TW6|B Chain B, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A 9MER PEPTIDE
DERIVED From Smac
Length = 133
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 366 PDQMAQAGFYHQPSGTG-DDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV---KG- 420
P+ +A AGF+H TG D+ CF C L W+ D+PW EH + P C F+ KG
Sbjct: 66 PELLAAAGFFH----TGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLLRSKGQ 121
Query: 421 EYTQNVPLS 429
EY N+ L+
Sbjct: 122 EYINNIHLT 130
>pdb|2I3H|A Chain A, Structure Of An Ml-iap/xiap Chimera Bound To A 4-mer
Peptide (avpw)
pdb|2I3H|B Chain B, Structure Of An Ml-iap/xiap Chimera Bound To A 4-mer
Peptide (avpw)
pdb|2I3I|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
pdb|2I3I|B Chain B, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
pdb|3F7H|A Chain A, Structure Of An Ml-iap/xiap Chimera Bound To A
Peptidomimetic
pdb|3F7H|B Chain B, Structure Of An Ml-iap/xiap Chimera Bound To A
Peptidomimetic
pdb|3F7I|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
pdb|3F7I|B Chain B, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
pdb|3GT9|A Chain A, Structure Of An Ml-iap/xiap Chimera Bound To A
Peptidomimetic
pdb|3GT9|B Chain B, Structure Of An Ml-iap/xiap Chimera Bound To A
Peptidomimetic
pdb|3GTA|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
pdb|3GTA|B Chain B, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
Length = 133
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 366 PDQMAQAGFYHQPSGTG-DDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV---KG- 420
P+ +A AGF+H TG D+ CF C L W+ D+PW EH + P C F+ KG
Sbjct: 66 PELLAAAGFFH----TGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLLRSKGQ 121
Query: 421 EYTQNVPLS 429
EY N+ L+
Sbjct: 122 EYINNIHLT 130
>pdb|3UW5|A Chain A, Crystal Structure Of The Bir Domain Of Mliap Bound To
Gdc0152
pdb|3UW5|B Chain B, Crystal Structure Of The Bir Domain Of Mliap Bound To
Gdc0152
Length = 116
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 366 PDQMAQAGFYHQPSGTG-DDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV---KG- 420
P+ +A AGF+H TG D+ CF C L W+ D+PW EH + P C F+ KG
Sbjct: 49 PELLAAAGFFH----TGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLLRSKGQ 104
Query: 421 EYTQNVPLS 429
EY N+ L+
Sbjct: 105 EYINNIHLT 113
>pdb|2VSL|A Chain A, Crystal Structure Of Xiap Bir3 With A Bivalent Smac
Mimetic
Length = 96
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 367 DQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV---KG-EY 422
+Q+A+AGFY G D+ CF C L W+P+++PW +H + P C ++ KG EY
Sbjct: 33 EQLARAGFYALGEG---DKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEY 89
Query: 423 TQNVPLS 429
N+ L+
Sbjct: 90 INNIHLT 96
>pdb|1NW9|A Chain A, Structure Of Caspase-9 In An Inhibitory Complex With Xiap-
Bir3
Length = 98
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 367 DQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV---KG-EY 422
+Q+A+AGFY G D+ CF C L W+P+++PW +H + P C ++ KG EY
Sbjct: 30 EQLARAGFYALGEG---DKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEY 86
Query: 423 TQNVPLS 429
N+ L+
Sbjct: 87 INNIHLT 93
>pdb|3CLX|D Chain D, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac005
pdb|3CLX|A Chain A, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac005
pdb|3CLX|B Chain B, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac005
pdb|3CLX|C Chain C, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac005
pdb|3CM2|D Chain D, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|A Chain A, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|B Chain B, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|C Chain C, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|E Chain E, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|F Chain F, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|G Chain G, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|H Chain H, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|I Chain I, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|J Chain J, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM7|C Chain C, Crystal Structure Of Xiap-Bir3 Domain In Complex With
Smac- Mimetic Compuond, Smac005
pdb|3CM7|A Chain A, Crystal Structure Of Xiap-Bir3 Domain In Complex With
Smac- Mimetic Compuond, Smac005
pdb|3CM7|B Chain B, Crystal Structure Of Xiap-Bir3 Domain In Complex With
Smac- Mimetic Compuond, Smac005
pdb|3CM7|D Chain D, Crystal Structure Of Xiap-Bir3 Domain In Complex With
Smac- Mimetic Compuond, Smac005
Length = 130
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 367 DQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV---KG-EY 422
+Q+A+AGFY G D+ CF C L W+P+++PW +H + P C ++ KG EY
Sbjct: 56 EQLARAGFYALGEG---DKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEY 112
Query: 423 TQNVPLS 429
N+ L+
Sbjct: 113 INNIHLT 119
>pdb|1G73|C Chain C, Crystal Structure Of Smac Bound To Xiap-Bir3 Domain
pdb|1G73|D Chain D, Crystal Structure Of Smac Bound To Xiap-Bir3 Domain
Length = 121
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 367 DQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV---KG-EY 422
+Q+A+AGFY G D+ CF C L W+P+++PW +H + P C ++ KG EY
Sbjct: 45 EQLARAGFYALGEG---DKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEY 101
Query: 423 TQNVPLS 429
N+ L+
Sbjct: 102 INNIHLT 108
>pdb|4HY0|A Chain A, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|B Chain B, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|C Chain C, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|D Chain D, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|E Chain E, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|F Chain F, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|G Chain G, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|H Chain H, Crystal Structure Of Xiap Bir3 With T3256336
Length = 125
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 367 DQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV---KG-EY 422
+Q+A+AGFY G D+ CF C L W+P+++PW +H + P C ++ KG EY
Sbjct: 50 EQLARAGFYALGEG---DKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEY 106
Query: 423 TQNVPLS 429
N+ L+
Sbjct: 107 INNIHLT 113
>pdb|1F9X|A Chain A, Average Nmr Solution Structure Of The Bir-3 Domain Of Xiap
Length = 120
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 367 DQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV---KG-EY 422
+Q+A+AGFY G D+ CF C L W+P+++PW +H + P C ++ KG EY
Sbjct: 46 EQLARAGFYALGEG---DKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEY 102
Query: 423 TQNVPLS 429
N+ L+
Sbjct: 103 INNIHLT 109
>pdb|1G3F|A Chain A, Nmr Structure Of A 9 Residue Peptide From SmacDIABLO
Complexed To The Bir3 Domain Of Xiap
pdb|1TFQ|A Chain A, Nmr Structure Of An Antagonists Of The Xiap-Caspase-9
Interaction Complexed To The Bir3 Domain Of Xiap
pdb|1TFT|A Chain A, Nmr Structure Of An Antagonists Of The Xiap-Caspase-9
Interaction Complexed To The Bir3 Domain Of Xiap
Length = 117
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 367 DQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV---KG-EY 422
+Q+A+AGFY G D+ CF C L W+P+++PW +H + P C ++ KG EY
Sbjct: 43 EQLARAGFYALGEG---DKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEY 99
Query: 423 TQNVPLS 429
N+ L+
Sbjct: 100 INNIHLT 106
>pdb|3EYL|A Chain A, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound
pdb|3EYL|B Chain B, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound
pdb|3G76|A Chain A, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|B Chain B, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|C Chain C, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|D Chain D, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|E Chain E, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|F Chain F, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|G Chain G, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|H Chain H, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|4EC4|A Chain A, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|B Chain B, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|C Chain C, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|D Chain D, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|E Chain E, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|J Chain J, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|F Chain F, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|G Chain G, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|K Chain K, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|L Chain L, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
Length = 122
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 367 DQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV---KG-EY 422
+Q+A+AGFY G D+ CF C L W+P+++PW +H + P C ++ KG EY
Sbjct: 42 EQLARAGFYALGEG---DKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEY 98
Query: 423 TQNVPLS 429
N+ L+
Sbjct: 99 INNIHLT 105
>pdb|2JK7|A Chain A, Xiap Bir3 Bound To A Smac Mimetic
Length = 116
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 367 DQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV---KG-EY 422
+Q+A+AGFY G D+ CF C L W+P+++PW +H + P C ++ KG EY
Sbjct: 42 EQLARAGFYALGEG---DKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEY 98
Query: 423 TQNVPLS 429
N+ L+
Sbjct: 99 INNIHLT 105
>pdb|2OPZ|A Chain A, Avpf Bound To Bir3-Xiap
pdb|2OPZ|B Chain B, Avpf Bound To Bir3-Xiap
pdb|2OPZ|C Chain C, Avpf Bound To Bir3-Xiap
pdb|2OPZ|D Chain D, Avpf Bound To Bir3-Xiap
Length = 109
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 367 DQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV---KG-EY 422
+Q+A+AGFY G D+ CF C L W+P+++PW +H + P C ++ KG EY
Sbjct: 34 EQLARAGFYALGEG---DKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEY 90
Query: 423 TQNVPLS 429
N+ L+
Sbjct: 91 INNIHLT 97
>pdb|2OPY|A Chain A, Smac Mimic Bound To Bir3-Xiap
Length = 106
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 367 DQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV---KG-EY 422
+Q+A+AGFY G D+ CF C L W+P+++PW +H + P C ++ KG EY
Sbjct: 34 EQLARAGFYALGEG---DKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEY 90
Query: 423 TQNVPLS 429
N+ L+
Sbjct: 91 INNIHLT 97
>pdb|1XB0|A Chain A, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB0|B Chain B, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB0|C Chain C, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB0|D Chain D, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB0|E Chain E, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB0|F Chain F, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|A Chain A, The Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|B Chain B, The Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|C Chain C, The Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|D Chain D, The Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|E Chain E, The Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|F Chain F, The Structure Of The Bir Domain Of Iap-Like Protein 2
Length = 108
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 367 DQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV---KG-EY 422
+Q+A+AGFY + +D+ CF C L W+P ++PW +H + P C ++ KG EY
Sbjct: 34 EQLARAGFY---AIGQEDKVQCFHCGGGLANWKPKEDPWEQHAKWYPGCKYLLEEKGHEY 90
Query: 423 TQNVPLS 429
N+ L+
Sbjct: 91 INNIHLT 97
>pdb|1JD6|A Chain A, Crystal Structure Of Diap1-bir2/hid Complex
pdb|1JD5|A Chain A, Crystal Structure Of Diap1-Bir2GRIM
pdb|1JD4|A Chain A, Crystal Structure Of Diap1-Bir2
pdb|1JD4|B Chain B, Crystal Structure Of Diap1-Bir2
pdb|1Q4Q|A Chain A, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|B Chain B, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|C Chain C, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|D Chain D, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|E Chain E, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|F Chain F, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|G Chain G, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|H Chain H, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|I Chain I, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|J Chain J, Crystal Structure Of A Diap1-Dronc Complex
Length = 124
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFVK 419
P Q+A+AGF++ +G GD R CF+C L+ W DEPW +H C FVK
Sbjct: 44 PHQLAEAGFFY--TGVGD-RVRCFSCGGGLMDWNDNDEPWEQHALWLSQCRFVK 94
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 244 EAARRETFAKWP-HMDYKWALPDQMAQAGFYHQPSGTGYDRAMCFTILWALPD 295
E AR TF WP ++ K P Q+A+AGF++ +G G DR CF+ L D
Sbjct: 26 ETARLRTFEAWPRNLKQK---PHQLAEAGFFY--TGVG-DRVRCFSCGGGLMD 72
>pdb|1OXN|A Chain A, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXN|B Chain B, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXN|C Chain C, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXN|D Chain D, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXN|E Chain E, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXQ|A Chain A, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXQ|B Chain B, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXQ|C Chain C, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXQ|D Chain D, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXQ|E Chain E, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OY7|A Chain A, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (ml-iap)
pdb|1OY7|B Chain B, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (ml-iap)
pdb|1OY7|C Chain C, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (ml-iap)
pdb|1OY7|D Chain D, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (ml-iap)
pdb|1OY7|E Chain E, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (ml-iap)
Length = 140
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 366 PDQMAQAGFYHQPSGTG-DDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P+ +A AGF+H TG D+ CF C L W+ D+PW EH + P C F+
Sbjct: 66 PELLAAAGFFH----TGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPSCQFL 115
>pdb|3F7G|A Chain A, Structure Of The Bir Domain From Ml-Iap Bound To A
Peptidomimetic
pdb|3F7G|B Chain B, Structure Of The Bir Domain From Ml-Iap Bound To A
Peptidomimetic
pdb|3F7G|C Chain C, Structure Of The Bir Domain From Ml-Iap Bound To A
Peptidomimetic
pdb|3F7G|D Chain D, Structure Of The Bir Domain From Ml-Iap Bound To A
Peptidomimetic
pdb|3F7G|E Chain E, Structure Of The Bir Domain From Ml-Iap Bound To A
Peptidomimetic
Length = 140
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 366 PDQMAQAGFYHQPSGTG-DDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P+ +A AGF+H TG D+ CF C L W+ D+PW EH + P C F+
Sbjct: 66 PELLAAAGFFH----TGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPSCQFL 115
>pdb|2VM5|A Chain A, Human Bir2 Domain Of Baculoviral Inhibitor Of Apoptosis
Repeat-Containing 1 (Birc1)
Length = 106
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 366 PDQMAQAGFYHQPSGTG-DDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFVKGE 421
P +++AGF TG D CF+C CL WE D+PW EH + P C F++ +
Sbjct: 40 PCVLSEAGFVF----TGKQDTVQCFSCGGCLGNWEEGDDPWKEHAKWFPKCEFLRSK 92
>pdb|2POP|B Chain B, The Crystal Structure Of Tab1 And Bir1 Complex
pdb|2POP|D Chain D, The Crystal Structure Of Tab1 And Bir1 Complex
Length = 95
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 369 MAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFVKGEYTQN 425
+A+AGF + G D CF+C + W+ D H + SP C F+ G Y +N
Sbjct: 42 LARAGFLYTGEG---DTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFINGFYLEN 95
>pdb|3M0A|D Chain D, Crystal Structure Of Traf2:ciap2 Complex
pdb|3M0D|D Chain D, Crystal Structure Of The Traf1:traf2:ciap2 Complex
Length = 75
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 369 MAQAGFYHQPSGTG-DDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFVK 419
+A+AGFY+ TG +D+ CF C + L W+ D P +H++ P C FV+
Sbjct: 26 LARAGFYY----TGVNDKVKCFCCGLMLDNWKRGDSPTEKHKKLYPSCRFVQ 73
>pdb|3M1D|A Chain A, Structure Of Bir1 From Ciap1
pdb|3M1D|B Chain B, Structure Of Bir1 From Ciap1
Length = 85
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 369 MAQAGFYHQPSGTG-DDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFVK 419
+A+AGFY+ TG +D+ CF C + L W+ D P +H++ P C F++
Sbjct: 33 LARAGFYY----TGVNDKVKCFCCGLMLDNWKLGDSPIQKHKQLYPSCSFIQ 80
>pdb|2QRA|D Chain D, Crystal Structure Of Xiap Bir1 Domain (p21 Form)
pdb|2QRA|C Chain C, Crystal Structure Of Xiap Bir1 Domain (p21 Form)
pdb|2QRA|B Chain B, Crystal Structure Of Xiap Bir1 Domain (p21 Form)
pdb|2QRA|A Chain A, Crystal Structure Of Xiap Bir1 Domain (p21 Form)
Length = 111
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 369 MAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFVKGEYTQ 424
+A+AGF + G D CF+C + W+ D H + SP C F+ G Y +
Sbjct: 59 LARAGFLYTGEG---DTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFINGFYLE 111
>pdb|2POI|A Chain A, Crystal Structure Of Xiap Bir1 Domain (I222 Form)
Length = 94
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 369 MAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFVKGEYTQ 424
+A+AGF + G D CF+C + W+ D H + SP C F+ G Y +
Sbjct: 42 LARAGFLYTGEG---DTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFINGFYLE 94
>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
pdb|3OZ6|B Chain B, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
Length = 388
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 208 PALAIASAINERLNCLHPTPFPIDSQP----SDHRNLMFSEAARRE 249
P ++I NE NC H PI+ D+RNL++SE +RR+
Sbjct: 330 PFVSIFHNPNEEPNCDHIITIPINDNVKHSIDDYRNLVYSEISRRK 375
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,780,184
Number of Sequences: 62578
Number of extensions: 912361
Number of successful extensions: 1929
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1815
Number of HSP's gapped (non-prelim): 103
length of query: 828
length of database: 14,973,337
effective HSP length: 107
effective length of query: 721
effective length of database: 8,277,491
effective search space: 5968071011
effective search space used: 5968071011
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)