Query psy13379
Match_columns 828
No_of_seqs 246 out of 940
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 17:58:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1101|consensus 99.8 1.9E-21 4.1E-26 189.1 2.8 84 339-427 10-93 (147)
2 smart00238 BIR Baculoviral inh 99.7 4.3E-19 9.4E-24 150.8 3.4 69 344-419 2-70 (71)
3 PF00653 BIR: Inhibitor of Apo 99.7 3.1E-19 6.7E-24 152.4 1.8 69 347-419 1-70 (70)
4 cd00022 BIR Baculoviral inhibi 99.7 7.6E-19 1.6E-23 148.5 3.9 68 345-419 1-68 (69)
5 KOG1101|consensus 99.7 1E-17 2.2E-22 163.2 4.9 77 234-321 5-86 (147)
6 smart00238 BIR Baculoviral inh 99.6 6.5E-16 1.4E-20 131.3 4.7 65 243-320 1-70 (71)
7 cd00022 BIR Baculoviral inhibi 99.5 3.6E-15 7.8E-20 126.2 3.8 63 245-320 1-68 (69)
8 PF00653 BIR: Inhibitor of Apo 99.5 3.6E-15 7.8E-20 127.5 2.6 62 247-319 1-69 (70)
9 PF07967 zf-C3HC: C3HC zinc fi 93.1 0.059 1.3E-06 52.0 2.4 47 343-396 6-54 (133)
10 PF07967 zf-C3HC: C3HC zinc fi 91.5 0.19 4.1E-06 48.5 3.7 45 241-290 4-50 (133)
11 PF00400 WD40: WD domain, G-be 86.1 1.2 2.7E-05 32.7 4.0 27 28-54 13-39 (39)
12 cd00200 WD40 WD40 domain, foun 81.7 4.5 9.7E-05 38.7 6.7 58 28-88 137-196 (289)
13 PTZ00421 coronin; Provisional 80.7 5 0.00011 46.9 8.0 57 29-85 171-227 (493)
14 cd00200 WD40 WD40 domain, foun 80.4 8.4 0.00018 36.8 8.1 58 29-88 12-70 (289)
15 KOG1274|consensus 77.7 3.8 8.3E-05 50.7 6.0 59 29-87 141-206 (933)
16 smart00320 WD40 WD40 repeats. 73.5 4.5 9.8E-05 26.4 3.1 27 28-54 14-40 (40)
17 KOG0278|consensus 70.2 14 0.00031 40.7 7.3 65 27-93 144-208 (334)
18 KOG0286|consensus 68.2 12 0.00026 41.8 6.4 78 28-112 231-308 (343)
19 PF12894 Apc4_WD40: Anaphase-p 67.3 9.6 0.00021 31.3 4.2 35 22-56 7-41 (47)
20 PF07569 Hira: TUP1-like enhan 66.2 12 0.00027 39.2 5.9 38 24-61 8-45 (219)
21 KOG0640|consensus 64.0 18 0.00038 40.9 6.7 60 29-90 219-281 (430)
22 KOG0295|consensus 63.6 12 0.00026 42.8 5.4 35 29-63 111-145 (406)
23 KOG0316|consensus 61.5 11 0.00025 41.1 4.6 59 29-88 186-255 (307)
24 PTZ00420 coronin; Provisional 60.9 27 0.00058 42.0 8.0 36 29-64 170-205 (568)
25 PF06977 SdiA-regulated: SdiA- 59.5 37 0.00081 36.6 8.1 69 22-92 166-243 (248)
26 PTZ00421 coronin; Provisional 59.5 31 0.00066 40.6 8.1 51 29-80 128-179 (493)
27 KOG0296|consensus 55.7 21 0.00046 40.8 5.6 54 30-85 331-384 (399)
28 KOG0772|consensus 55.7 7.2 0.00016 46.1 2.1 25 29-53 460-484 (641)
29 KOG0266|consensus 54.4 37 0.0008 39.0 7.5 60 28-89 248-307 (456)
30 PF06977 SdiA-regulated: SdiA- 53.8 50 0.0011 35.7 8.0 63 26-90 21-84 (248)
31 PTZ00420 coronin; Provisional 53.7 39 0.00086 40.6 7.8 37 28-64 127-164 (568)
32 KOG0266|consensus 53.2 31 0.00067 39.6 6.7 72 29-103 291-377 (456)
33 KOG4765|consensus 53.0 6.7 0.00014 44.8 1.3 49 341-396 51-101 (419)
34 KOG0288|consensus 52.8 23 0.00049 41.2 5.4 61 28-88 389-450 (459)
35 TIGR03866 PQQ_ABC_repeats PQQ- 52.2 26 0.00056 35.3 5.3 42 29-70 251-293 (300)
36 PF01011 PQQ: PQQ enzyme repea 52.1 24 0.00052 27.0 3.8 31 39-69 1-31 (38)
37 KOG1273|consensus 52.0 30 0.00065 39.2 6.0 58 26-86 65-123 (405)
38 smart00564 PQQ beta-propeller 50.7 22 0.00048 25.5 3.3 24 40-63 8-31 (33)
39 PLN00181 protein SPA1-RELATED; 50.7 50 0.0011 40.4 8.3 59 29-88 535-594 (793)
40 PLN00181 protein SPA1-RELATED; 49.0 52 0.0011 40.2 8.0 57 29-87 578-635 (793)
41 TIGR03866 PQQ_ABC_repeats PQQ- 49.0 87 0.0019 31.5 8.4 58 29-88 75-133 (300)
42 PF13360 PQQ_2: PQQ-like domai 48.1 1E+02 0.0022 30.8 8.6 63 38-101 122-194 (238)
43 KOG0282|consensus 47.9 17 0.00036 42.8 3.4 55 32-87 305-360 (503)
44 KOG4765|consensus 46.6 23 0.00049 40.8 4.1 50 236-290 46-97 (419)
45 PF11682 DUF3279: Protein of u 46.2 19 0.00042 35.6 3.1 49 363-420 15-71 (128)
46 KOG0275|consensus 44.4 61 0.0013 37.0 6.9 54 28-81 350-404 (508)
47 TIGR03300 assembly_YfgL outer 43.8 60 0.0013 35.5 6.8 31 39-69 321-351 (377)
48 PF13360 PQQ_2: PQQ-like domai 42.3 58 0.0013 32.5 5.9 49 37-88 35-83 (238)
49 KOG0289|consensus 41.3 56 0.0012 38.4 6.2 58 27-86 348-405 (506)
50 PF11768 DUF3312: Protein of u 41.2 60 0.0013 39.0 6.6 76 34-128 267-342 (545)
51 PF14134 DUF4301: Domain of un 39.9 16 0.00034 43.3 1.7 34 170-205 480-513 (513)
52 KOG0273|consensus 38.1 64 0.0014 38.2 6.1 62 32-94 415-486 (524)
53 PF08600 Rsm1: Rsm1-like; Int 37.7 21 0.00046 32.9 1.9 36 383-421 17-64 (91)
54 KOG0310|consensus 36.8 96 0.0021 36.8 7.2 59 29-88 113-172 (487)
55 KOG1273|consensus 36.2 94 0.002 35.5 6.8 74 21-95 148-221 (405)
56 KOG1036|consensus 35.8 1E+02 0.0022 34.8 6.9 54 23-79 10-64 (323)
57 KOG0292|consensus 35.4 35 0.00077 43.0 3.7 36 29-64 253-288 (1202)
58 TIGR02276 beta_rpt_yvtn 40-res 34.5 1.2E+02 0.0025 22.7 5.2 32 39-70 4-36 (42)
59 KOG0647|consensus 34.4 86 0.0019 35.5 6.1 69 20-88 21-91 (347)
60 cd01211 GAPCenA GAPCenA Phosph 34.4 40 0.00086 33.5 3.2 31 37-67 38-70 (125)
61 KOG1274|consensus 33.2 91 0.002 39.5 6.6 63 29-91 191-263 (933)
62 KOG1188|consensus 33.1 72 0.0016 36.5 5.3 34 39-72 41-74 (376)
63 PRK11138 outer membrane biogen 32.4 83 0.0018 35.0 5.7 31 38-68 335-365 (394)
64 TIGR03124 ctirate_citX holo-AC 32.2 57 0.0012 33.4 4.1 23 645-667 119-141 (165)
65 PF08662 eIF2A: Eukaryotic tra 32.1 2.3E+02 0.005 28.9 8.5 64 30-97 104-170 (194)
66 PF14339 DUF4394: Domain of un 31.8 2.1E+02 0.0046 31.2 8.4 85 28-112 28-118 (236)
67 KOG1446|consensus 30.7 1.7E+02 0.0036 33.2 7.5 58 28-85 189-248 (311)
68 KOG0310|consensus 30.4 87 0.0019 37.1 5.5 40 29-69 199-238 (487)
69 KOG1407|consensus 29.9 1.3E+02 0.0027 33.8 6.3 58 29-88 67-125 (313)
70 PF07433 DUF1513: Protein of u 29.1 1.9E+02 0.0041 32.7 7.7 70 23-97 213-283 (305)
71 smart00036 CNH Domain found in 29.1 1.7E+02 0.0037 32.0 7.4 58 25-88 242-300 (302)
72 KOG3497|consensus 27.9 24 0.00052 31.2 0.5 14 386-399 5-19 (69)
73 KOG0284|consensus 27.2 92 0.002 36.5 5.0 62 27-90 223-284 (464)
74 COG3391 Uncharacterized conser 27.0 1.9E+02 0.0042 32.5 7.5 69 28-105 117-188 (381)
75 PF08450 SGL: SMP-30/Gluconola 26.8 2.6E+02 0.0057 28.7 7.9 59 29-89 186-245 (246)
76 KOG0281|consensus 26.7 37 0.0008 39.0 1.8 30 40-69 249-278 (499)
77 KOG0293|consensus 26.7 1E+02 0.0022 36.2 5.2 56 31-86 274-329 (519)
78 PF04053 Coatomer_WDAD: Coatom 26.4 1.1E+02 0.0025 35.7 5.7 56 24-87 104-162 (443)
79 KOG0772|consensus 26.2 66 0.0014 38.6 3.7 77 27-107 365-445 (641)
80 KOG0303|consensus 25.8 1.5E+02 0.0033 34.7 6.4 65 29-95 176-241 (472)
81 KOG0640|consensus 25.0 1E+02 0.0022 35.2 4.7 62 29-90 264-325 (430)
82 KOG0276|consensus 24.9 1.2E+02 0.0025 37.5 5.4 74 28-103 229-313 (794)
83 PRK11028 6-phosphogluconolacto 24.8 2.7E+02 0.0059 29.8 7.8 60 29-88 177-246 (330)
84 PRK11028 6-phosphogluconolacto 24.2 2.5E+02 0.0055 30.1 7.5 61 28-89 127-194 (330)
85 KOG0303|consensus 23.6 1E+02 0.0022 36.1 4.4 35 29-63 134-169 (472)
86 KOG0295|consensus 23.4 2E+02 0.0043 33.4 6.6 54 40-95 306-361 (406)
87 PF08662 eIF2A: Eukaryotic tra 22.9 5.4E+02 0.012 26.3 9.2 34 29-63 62-97 (194)
88 KOG0647|consensus 22.7 1.5E+02 0.0032 33.7 5.4 84 27-112 252-341 (347)
89 KOG0642|consensus 21.3 1.2E+02 0.0027 36.6 4.7 69 29-107 492-560 (577)
90 KOG0286|consensus 21.3 2.6E+02 0.0057 31.8 6.9 68 30-99 149-226 (343)
No 1
>KOG1101|consensus
Probab=99.82 E-value=1.9e-21 Score=189.08 Aligned_cols=84 Identities=33% Similarity=0.614 Sum_probs=74.2
Q ss_pred cCCCCccccccccccccccccccccCChHHHHhCCeEeCCCCCCCCeEEeeccCCcccCcCCCCCchhhccccCCCCCcc
Q psy13379 339 GITDSGTGRFLSSAQWYRDDDRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418 (828)
Q Consensus 339 ~~~ss~e~RLkTF~nWP~~~kr~~~vspekLAkAGFYYtpt~~G~D~VkCF~Cg~~L~~WE~~DDP~~EH~rhsP~C~Fv 418 (828)
..|..+++|++||.+||+...+ ++.|++||+|||||+|+ .|.|+||+|+++|.+|+++||||+||.||+|.|.|+
T Consensus 10 ~~~~~~~aRl~TF~~Wp~~~~~--~c~p~~lA~AGFy~~g~---~D~~~Cf~C~~~L~~We~~DDPW~EH~k~~p~C~F~ 84 (147)
T KOG1101|consen 10 PKMAREEARLKTFKNWPYSDMD--KCTPEQLAEAGFYYTGK---QDCVKCFFCSGGLDDWEPGDDPWEEHAKWSPECEFL 84 (147)
T ss_pred hhHHHHHHHHhhhhcCCCCCCC--CcCHHHHHhCCceeeCC---CCceECcccCcccccCCCCCCcHHHHHhhCCCCcee
Confidence 4567899999999999997533 79999999999999963 699999999999999999999999999999999999
Q ss_pred ccccccccc
Q psy13379 419 KGEYTQNVP 427 (828)
Q Consensus 419 k~~~~~Nvp 427 (828)
+....++..
T Consensus 85 ~~~k~~e~~ 93 (147)
T KOG1101|consen 85 KLKKGREFL 93 (147)
T ss_pred ecccchhhh
Confidence 976555443
No 2
>smart00238 BIR Baculoviral inhibition of apoptosis protein repeat. Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes.
Probab=99.75 E-value=4.3e-19 Score=150.77 Aligned_cols=69 Identities=41% Similarity=0.822 Sum_probs=62.7
Q ss_pred ccccccccccccccccccccCChHHHHhCCeEeCCCCCCCCeEEeeccCCcccCcCCCCCchhhccccCCCCCccc
Q psy13379 344 GTGRFLSSAQWYRDDDRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFVK 419 (828)
Q Consensus 344 ~e~RLkTF~nWP~~~kr~~~vspekLAkAGFYYtpt~~G~D~VkCF~Cg~~L~~WE~~DDP~~EH~rhsP~C~Fvk 419 (828)
+++|++||.+||+. ....+++||++||||+| .+|.|+|++|+..+.+|+++|+||++|++++|+|+|++
T Consensus 2 ~~~R~~sF~~w~~~----~~~~~~~LA~~Gfyy~~---~~d~v~C~~C~~~l~~w~~~d~p~~~H~~~~p~C~fv~ 70 (71)
T smart00238 2 EEARLKTFQNWPYN----SKLTPEQLAEAGFYYTG---VGDEVKCFFCGGELDNWEPGDDPWEEHKKWSPNCPFVR 70 (71)
T ss_pred HHHHHHHHHcCCCC----ccCCHHHHHHcCCeECC---CCCEEEeCCCCCCcCCCCCCCCHHHHHhHhCcCCcCcc
Confidence 57899999999963 24689999999999994 28999999999999999999999999999999999986
No 3
>PF00653 BIR: Inhibitor of Apoptosis domain; InterPro: IPR001370 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The baculovirus inhibitor of apoptosis protein repeat (BIR) is a domain of tandem repeats separated by a variable length linker that seems to confer cell death-preventing activity [, ]. The BIR domains characterise the Inhibitor of Apoptosis (IAP) family of proteins (MEROPS proteinase inhibitor family I32, clan IV) that suppress apoptosis by interacting with and inhibiting the enzymatic activity of both initiator and effector caspases (MEROPS peptidase family C14, IPR002398 from INTERPRO). Several distinct mammalian IAPs including XIAP, c-IAP1, c-IAP2, and ML-IAP, have been identified, and they all exhibit antiapoptotic activity in cell culture. The functional unit in each IAP protein is the baculoviral IAP repeat (BIR), which contains approximately 80 amino acids folded around a zinc atom. Most mammalian IAPs have more than one BIR domain, with the different BIR domains performing distinct functions. For example, in XIAP, the third BIR domain (BIR3) potently inhibits the catalytic activity of caspase-9, whereas the linker sequences immediately preceding the second BIR domain (BIR2) selectively targets caspase-3 or -7. The first-recognised members of family MEROPS inhibitor family I32 were viral proteins that inhibited the apoptosis of infected cells: Cp-IAP from Cydia pomonella granulosis virus (CpGV) [] and Op-IAP from Orgyia pseudotsugata multicapsid polyhedrosis virus(OpMNPV) []. The discovery of homologous proteins in mammals followed soon after with the recognition that mutations in the gene for neuronal apoptosis inhibitory protein (NIAP) underlie spinal muscular atrophy []. The inhibitors in family I32 all possess one or more 80-residue domains known as BIR (baculovirus inhibitor repeat) domains and have accordingly been termed 'BIR-containing' or 'BIRC' proteins as well as IAP proteins. The mechanism of inhibition of caspases by the IAP proteins is complex, and reactive site residues cannot yet be identified with any confidence. Despite the conservation of the BIR or IAP (inhibitor of apoptosis) domains throughout the family it seems clear that other parts of the molecules also make essential contributions to inhibitory activity. Homologs of most components in the mammalian apoptotic pathway have been identified in fruit flies. The Drosophila Apaf-1, known as Dapaf-1, HAC-1 or Dark, shares significant sequence similarity with its mammalian counterpart, and is critically important for the activation of the Drosophila initiator caspase Dronc. Dronc, in turn, cleaves and activates the effector caspase DrICE. The Drosophila IAP, DIAP1, binds to and in-activates both DrICE and Dronc through its BIR1 and BIR2 domains. During apoptosis, the anti-death function of DIAP1 is countered by at least four pro-apoptotic proteins, Reaper, Hid, Grim, and sickle, through direct physical interactions. These four proteins represent the functional homologs of the mammalian protein Smac, and they all share a conserved IAP-binding motif at their N termini. The three proteins Reaper, Hid, and Grim are collectively referred to as the RHG proteins [, ]. Both XIAP and DIAP1 contain a RING domain at their C termini, and can act as an E3 ubiquitin ligase. Indeed, both XIAP and DIAP1 have been shown to promote self-ubiquitination and degradation as well as to negatively regulate the target caspases. Nonetheless, important differences exist between XIAP and DIAP1. The primary function of XIAP is thought to inhibit the catalytic activities of caspases; to what extent the ubiquitinating activity of XIAP contributes to its function remains unclear. For DIAP1, however, the ubiquitinating activity appears to be essential for its function. Recently a Drosophila p53 protein has been identified that mediates apoptosis via a novel pathway involving the activation of the Reaper gene and subsequent inhibition of the inhibitors of apoptosis (IAPs). CIAP1, a major mammalian homologue of Drosophila IAPs, is irreversibly inhibited (cleaved) during p53-dependent apoptosis and this cleavage is mediated by a serine protease. Serine protease inhibitors that block CIAP1 cleavage inhibit p53-dependent apoptosis. Furthermore, activation of the p53 protein increases the transcription of the HTRA2 gene, which encodes a serine protease that interacts with CIAP1 and potentiates apoptosis. Therefore mammalian p53 protein activates apoptosis through a novel pathway functionally similar to that in Drosophila, which involves HTRA2 and subsequent inhibition of CIAP1 by cleavage [].; GO: 0005622 intracellular; PDB: 3HL5_B 3UW5_A 3CM7_A 1G3F_A 1G73_C 3G76_G 3CM2_C 2VSL_A 2OPZ_B 3CLX_A ....
Probab=99.74 E-value=3.1e-19 Score=152.44 Aligned_cols=69 Identities=48% Similarity=0.946 Sum_probs=57.7
Q ss_pred cccccc-cccccccccccCChHHHHhCCeEeCCCCCCCCeEEeeccCCcccCcCCCCCchhhccccCCCCCccc
Q psy13379 347 RFLSSA-QWYRDDDRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFVK 419 (828)
Q Consensus 347 RLkTF~-nWP~~~kr~~~vspekLAkAGFYYtpt~~G~D~VkCF~Cg~~L~~WE~~DDP~~EH~rhsP~C~Fvk 419 (828)
|++||. +||+... ...+++++||+|||||+| ..|+|+|++|+..|.+|+++||||++|++++|+|+|++
T Consensus 1 Rl~SF~~~wp~~~~-~~~~~~~~LA~aGFyy~~---~~d~v~C~~C~~~l~~w~~~Ddp~~~H~~~sp~C~f~k 70 (70)
T PF00653_consen 1 RLKSFRSNWPHSND-HDPVSPEKLARAGFYYTG---TGDRVRCFYCGLELDNWEPNDDPWEEHKRHSPNCPFVK 70 (70)
T ss_dssp HHHGGTTGSSTTTT-TSSSHHHHHHHTTEEEES---STTEEEETTTTEEEES-STT--HHHHHHHHSTTBHHHH
T ss_pred ChhHHCCcccCccc-cCCCCHHHHHHCCCEEcC---CCCEEEEeccCCEEeCCCCCCCHHHHHHHHCcCCeecC
Confidence 899995 6996421 235789999999999995 38999999999999999999999999999999999974
No 4
>cd00022 BIR Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins. In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger.
Probab=99.74 E-value=7.6e-19 Score=148.52 Aligned_cols=68 Identities=41% Similarity=0.878 Sum_probs=62.5
Q ss_pred cccccccccccccccccccCChHHHHhCCeEeCCCCCCCCeEEeeccCCcccCcCCCCCchhhccccCCCCCccc
Q psy13379 345 TGRFLSSAQWYRDDDRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFVK 419 (828)
Q Consensus 345 e~RLkTF~nWP~~~kr~~~vspekLAkAGFYYtpt~~G~D~VkCF~Cg~~L~~WE~~DDP~~EH~rhsP~C~Fvk 419 (828)
++|++||.+||++ ....+++||++||||+| ..|.++|++|+..+.+|+++|+|+++|++++|+|+|++
T Consensus 1 ~~R~~TF~~w~~~----~~~~~~~La~~Gfyy~~---~~d~v~C~~C~~~~~~w~~~d~p~~~H~~~~p~C~fv~ 68 (69)
T cd00022 1 EARLKTFKNWPIS----LKVTPEKLAEAGFYYTG---RGDEVKCFFCGLELKNWEPGDDPWEEHKRWSPNCPFVL 68 (69)
T ss_pred ChHHHHHHcCCCC----ccCCHHHHHHcCCeEcC---CCCEEEeCCCCCCccCCCCCCCHHHHHhHhCcCCcCcc
Confidence 4799999999975 35789999999999984 37999999999999999999999999999999999986
No 5
>KOG1101|consensus
Probab=99.70 E-value=1e-17 Score=163.18 Aligned_cols=77 Identities=29% Similarity=0.399 Sum_probs=69.6
Q ss_pred CCCchhhcccHHHHHhcccCCCCCCCCCCCHHHHHhCCeEeCCCCCCCCeEEEeeee-----ccCCCchhhcccccccCC
Q psy13379 234 PSDHRNLMFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCFTIL-----WALPDQMAQAGFYHQLSG 308 (828)
Q Consensus 234 ~~~~~~dM~sEe~RL~TF~nWP~~~~~~ispe~LArAGFYYTPtg~~~D~VkCF~Cg-----WE~gDdP~eeH~~H~~~~ 308 (828)
..+.+..|..+++||+||.+||+.....++|++||+|||||+|.+ |+|+||+|+ |+.+|||+++|.
T Consensus 5 ~~~~~~~~~~~~aRl~TF~~Wp~~~~~~c~p~~lA~AGFy~~g~~---D~~~Cf~C~~~L~~We~~DDPW~EH~------ 75 (147)
T KOG1101|consen 5 FDPQNPKMAREEARLKTFKNWPYSDMDKCTPEQLAEAGFYYTGKQ---DCVKCFFCSGGLDDWEPGDDPWEEHA------ 75 (147)
T ss_pred ccccchhHHHHHHHHhhhhcCCCCCCCCcCHHHHHhCCceeeCCC---CceECcccCcccccCCCCCCcHHHHH------
Confidence 345788999999999999999998766899999999999999654 999999996 999999999988
Q ss_pred CCCCCcccccccc
Q psy13379 309 TGDDRAMCFTIMG 321 (828)
Q Consensus 309 ~gr~sP~CpFV~~ 321 (828)
+|+|.|.|+..
T Consensus 76 --k~~p~C~F~~~ 86 (147)
T KOG1101|consen 76 --KWSPECEFLKL 86 (147)
T ss_pred --hhCCCCceeec
Confidence 78999999864
No 6
>smart00238 BIR Baculoviral inhibition of apoptosis protein repeat. Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes.
Probab=99.60 E-value=6.5e-16 Score=131.34 Aligned_cols=65 Identities=32% Similarity=0.465 Sum_probs=56.9
Q ss_pred cHHHHHhcccCCCCCCCCCCCHHHHHhCCeEeCCCCCCCCeEEEeeee-----ccCCCchhhcccccccCCCCCCCcccc
Q psy13379 243 SEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCFTIL-----WALPDQMAQAGFYHQLSGTGDDRAMCF 317 (828)
Q Consensus 243 sEe~RL~TF~nWP~~~~~~ispe~LArAGFYYTPtg~~~D~VkCF~Cg-----WE~gDdP~eeH~~H~~~~~gr~sP~Cp 317 (828)
++++|++||++||+.. ...+++||+|||||++. .|.|+|++|+ |+.+|+|+++|. +++|.|+
T Consensus 1 ~~~~R~~sF~~w~~~~--~~~~~~LA~~Gfyy~~~---~d~v~C~~C~~~l~~w~~~d~p~~~H~--------~~~p~C~ 67 (71)
T smart00238 1 SEEARLKTFQNWPYNS--KLTPEQLAEAGFYYTGV---GDEVKCFFCGGELDNWEPGDDPWEEHK--------KWSPNCP 67 (71)
T ss_pred CHHHHHHHHHcCCCCc--cCCHHHHHHcCCeECCC---CCEEEeCCCCCCcCCCCCCCCHHHHHh--------HhCcCCc
Confidence 4789999999999732 47899999999999954 3899999997 999999999987 6789999
Q ss_pred ccc
Q psy13379 318 TIM 320 (828)
Q Consensus 318 FV~ 320 (828)
|++
T Consensus 68 fv~ 70 (71)
T smart00238 68 FVR 70 (71)
T ss_pred Ccc
Confidence 985
No 7
>cd00022 BIR Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins. In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger.
Probab=99.54 E-value=3.6e-15 Score=126.18 Aligned_cols=63 Identities=29% Similarity=0.452 Sum_probs=55.3
Q ss_pred HHHHhcccCCCCCCCCCCCHHHHHhCCeEeCCCCCCCCeEEEeeee-----ccCCCchhhcccccccCCCCCCCcccccc
Q psy13379 245 AARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCFTIL-----WALPDQMAQAGFYHQLSGTGDDRAMCFTI 319 (828)
Q Consensus 245 e~RL~TF~nWP~~~~~~ispe~LArAGFYYTPtg~~~D~VkCF~Cg-----WE~gDdP~eeH~~H~~~~~gr~sP~CpFV 319 (828)
++|++||++||+.. ...+++||++||||+|. .|.++|++|+ |+.+|+|+++|. +++|.|+|+
T Consensus 1 ~~R~~TF~~w~~~~--~~~~~~La~~Gfyy~~~---~d~v~C~~C~~~~~~w~~~d~p~~~H~--------~~~p~C~fv 67 (69)
T cd00022 1 EARLKTFKNWPISL--KVTPEKLAEAGFYYTGR---GDEVKCFFCGLELKNWEPGDDPWEEHK--------RWSPNCPFV 67 (69)
T ss_pred ChHHHHHHcCCCCc--cCCHHHHHHcCCeEcCC---CCEEEeCCCCCCccCCCCCCCHHHHHh--------HhCcCCcCc
Confidence 37999999999861 47899999999999954 4899999997 999999999987 678999998
Q ss_pred c
Q psy13379 320 M 320 (828)
Q Consensus 320 ~ 320 (828)
.
T Consensus 68 ~ 68 (69)
T cd00022 68 L 68 (69)
T ss_pred c
Confidence 5
No 8
>PF00653 BIR: Inhibitor of Apoptosis domain; InterPro: IPR001370 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The baculovirus inhibitor of apoptosis protein repeat (BIR) is a domain of tandem repeats separated by a variable length linker that seems to confer cell death-preventing activity [, ]. The BIR domains characterise the Inhibitor of Apoptosis (IAP) family of proteins (MEROPS proteinase inhibitor family I32, clan IV) that suppress apoptosis by interacting with and inhibiting the enzymatic activity of both initiator and effector caspases (MEROPS peptidase family C14, IPR002398 from INTERPRO). Several distinct mammalian IAPs including XIAP, c-IAP1, c-IAP2, and ML-IAP, have been identified, and they all exhibit antiapoptotic activity in cell culture. The functional unit in each IAP protein is the baculoviral IAP repeat (BIR), which contains approximately 80 amino acids folded around a zinc atom. Most mammalian IAPs have more than one BIR domain, with the different BIR domains performing distinct functions. For example, in XIAP, the third BIR domain (BIR3) potently inhibits the catalytic activity of caspase-9, whereas the linker sequences immediately preceding the second BIR domain (BIR2) selectively targets caspase-3 or -7. The first-recognised members of family MEROPS inhibitor family I32 were viral proteins that inhibited the apoptosis of infected cells: Cp-IAP from Cydia pomonella granulosis virus (CpGV) [] and Op-IAP from Orgyia pseudotsugata multicapsid polyhedrosis virus(OpMNPV) []. The discovery of homologous proteins in mammals followed soon after with the recognition that mutations in the gene for neuronal apoptosis inhibitory protein (NIAP) underlie spinal muscular atrophy []. The inhibitors in family I32 all possess one or more 80-residue domains known as BIR (baculovirus inhibitor repeat) domains and have accordingly been termed 'BIR-containing' or 'BIRC' proteins as well as IAP proteins. The mechanism of inhibition of caspases by the IAP proteins is complex, and reactive site residues cannot yet be identified with any confidence. Despite the conservation of the BIR or IAP (inhibitor of apoptosis) domains throughout the family it seems clear that other parts of the molecules also make essential contributions to inhibitory activity. Homologs of most components in the mammalian apoptotic pathway have been identified in fruit flies. The Drosophila Apaf-1, known as Dapaf-1, HAC-1 or Dark, shares significant sequence similarity with its mammalian counterpart, and is critically important for the activation of the Drosophila initiator caspase Dronc. Dronc, in turn, cleaves and activates the effector caspase DrICE. The Drosophila IAP, DIAP1, binds to and in-activates both DrICE and Dronc through its BIR1 and BIR2 domains. During apoptosis, the anti-death function of DIAP1 is countered by at least four pro-apoptotic proteins, Reaper, Hid, Grim, and sickle, through direct physical interactions. These four proteins represent the functional homologs of the mammalian protein Smac, and they all share a conserved IAP-binding motif at their N termini. The three proteins Reaper, Hid, and Grim are collectively referred to as the RHG proteins [, ]. Both XIAP and DIAP1 contain a RING domain at their C termini, and can act as an E3 ubiquitin ligase. Indeed, both XIAP and DIAP1 have been shown to promote self-ubiquitination and degradation as well as to negatively regulate the target caspases. Nonetheless, important differences exist between XIAP and DIAP1. The primary function of XIAP is thought to inhibit the catalytic activities of caspases; to what extent the ubiquitinating activity of XIAP contributes to its function remains unclear. For DIAP1, however, the ubiquitinating activity appears to be essential for its function. Recently a Drosophila p53 protein has been identified that mediates apoptosis via a novel pathway involving the activation of the Reaper gene and subsequent inhibition of the inhibitors of apoptosis (IAPs). CIAP1, a major mammalian homologue of Drosophila IAPs, is irreversibly inhibited (cleaved) during p53-dependent apoptosis and this cleavage is mediated by a serine protease. Serine protease inhibitors that block CIAP1 cleavage inhibit p53-dependent apoptosis. Furthermore, activation of the p53 protein increases the transcription of the HTRA2 gene, which encodes a serine protease that interacts with CIAP1 and potentiates apoptosis. Therefore mammalian p53 protein activates apoptosis through a novel pathway functionally similar to that in Drosophila, which involves HTRA2 and subsequent inhibition of CIAP1 by cleavage [].; GO: 0005622 intracellular; PDB: 3HL5_B 3UW5_A 3CM7_A 1G3F_A 1G73_C 3G76_G 3CM2_C 2VSL_A 2OPZ_B 3CLX_A ....
Probab=99.52 E-value=3.6e-15 Score=127.52 Aligned_cols=62 Identities=29% Similarity=0.543 Sum_probs=50.5
Q ss_pred HHhccc-CCCCCCC-CCCCHHHHHhCCeEeCCCCCCCCeEEEeeee-----ccCCCchhhcccccccCCCCCCCcccccc
Q psy13379 247 RRETFA-KWPHMDY-KWALPDQMAQAGFYHQPSGTGYDRAMCFTIL-----WALPDQMAQAGFYHQLSGTGDDRAMCFTI 319 (828)
Q Consensus 247 RL~TF~-nWP~~~~-~~ispe~LArAGFYYTPtg~~~D~VkCF~Cg-----WE~gDdP~eeH~~H~~~~~gr~sP~CpFV 319 (828)
||+||. +||+... ..+++++||+|||||+|. .|+|+||+|+ |+.+|+|+++|. +++|+|+|+
T Consensus 1 Rl~SF~~~wp~~~~~~~~~~~~LA~aGFyy~~~---~d~v~C~~C~~~l~~w~~~Ddp~~~H~--------~~sp~C~f~ 69 (70)
T PF00653_consen 1 RLKSFRSNWPHSNDHDPVSPEKLARAGFYYTGT---GDRVRCFYCGLELDNWEPNDDPWEEHK--------RHSPNCPFV 69 (70)
T ss_dssp HHHGGTTGSSTTTTTSSSHHHHHHHTTEEEESS---TTEEEETTTTEEEES-STT--HHHHHH--------HHSTTBHHH
T ss_pred ChhHHCCcccCccccCCCCHHHHHHCCCEEcCC---CCEEEEeccCCEEeCCCCCCCHHHHHH--------HHCcCCeec
Confidence 899995 5997531 258899999999999965 4999999997 999999999998 578999987
No 9
>PF07967 zf-C3HC: C3HC zinc finger-like ; InterPro: IPR012935 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc-finger like domain is distributed throughout the eukaryotic kingdom in NIPA (Nuclear interacting partner of ALK) and other proteins. NIPA is thought to perform an antiapoptotic role in nucleophosmin-anaplastic lymphoma kinase (ALK) mediated signalling events []. The domain is often repeated, with the second domain usually containing a large insert (approximately 90 residues) after the first three cysteine residues. The Schizosaccharomyces pombe protein containing this domain (O94506 from SWISSPROT) is involved in mRNA export from the nucleus []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=93.13 E-value=0.059 Score=51.98 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=38.5
Q ss_pred Cccccccccc--cccccccccccCChHHHHhCCeEeCCCCCCCCeEEeeccCCccc
Q psy13379 343 SGTGRFLSSA--QWYRDDDRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLV 396 (828)
Q Consensus 343 s~e~RLkTF~--nWP~~~kr~~~vspekLAkAGFYYtpt~~G~D~VkCF~Cg~~L~ 396 (828)
.+-.|++||. +|.. +...++|-.+|+.||... +.|.++|-.|+..+.
T Consensus 6 ~~l~RL~Tf~~~~W~~---kp~~lspl~cA~~GW~~~----~~d~l~C~~C~~~l~ 54 (133)
T PF07967_consen 6 DFLRRLETFKSLTWFP---KPPWLSPLECARRGWICV----SKDMLKCESCGARLC 54 (133)
T ss_pred HHHHHHHHcccccccC---CCcccCHHHHHHcCCCcC----CCCEEEeCCCCCEEE
Confidence 4568999997 5842 235789999999999997 699999999998665
No 10
>PF07967 zf-C3HC: C3HC zinc finger-like ; InterPro: IPR012935 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc-finger like domain is distributed throughout the eukaryotic kingdom in NIPA (Nuclear interacting partner of ALK) and other proteins. NIPA is thought to perform an antiapoptotic role in nucleophosmin-anaplastic lymphoma kinase (ALK) mediated signalling events []. The domain is often repeated, with the second domain usually containing a large insert (approximately 90 residues) after the first three cysteine residues. The Schizosaccharomyces pombe protein containing this domain (O94506 from SWISSPROT) is involved in mRNA export from the nucleus []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=91.51 E-value=0.19 Score=48.50 Aligned_cols=45 Identities=24% Similarity=0.270 Sum_probs=36.2
Q ss_pred cccHHHHHhccc--CCCCCCCCCCCHHHHHhCCeEeCCCCCCCCeEEEeeee
Q psy13379 241 MFSEAARRETFA--KWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCFTIL 290 (828)
Q Consensus 241 M~sEe~RL~TF~--nWP~~~~~~ispe~LArAGFYYTPtg~~~D~VkCF~Cg 290 (828)
...+-.||+||. +|... ...++|-.+|+.|+.-. + .|.++|..|+
T Consensus 4 r~~~l~RL~Tf~~~~W~~k-p~~lspl~cA~~GW~~~--~--~d~l~C~~C~ 50 (133)
T PF07967_consen 4 REDFLRRLETFKSLTWFPK-PPWLSPLECARRGWICV--S--KDMLKCESCG 50 (133)
T ss_pred HHHHHHHHHHcccccccCC-CcccCHHHHHHcCCCcC--C--CCEEEeCCCC
Confidence 345678999998 59432 34799999999999887 2 5999999998
No 11
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=86.07 E-value=1.2 Score=32.72 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=25.1
Q ss_pred ecceeeeecCCcEEEEEeecCeEEEEe
Q psy13379 28 DPDSVIYHPNLNILIVLSRNAECIVVD 54 (828)
Q Consensus 28 ~~~~i~Yhp~LNviL~~~~~g~v~V~D 54 (828)
.+..|.++|.-+.++..+.+|+|+|||
T Consensus 13 ~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 13 SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cEEEEEEecccccceeeCCCCEEEEEC
Confidence 367899999999999999999999998
No 12
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=81.65 E-value=4.5 Score=38.68 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=40.4
Q ss_pred ecceeeeecCCcEEEEEee-cCeEEEEeccccceeeeecccCCCCc-eeEEeeCCCCeEEEEc
Q psy13379 28 DPDSVIYHPNLNILIVLSR-NAECIVVDINSGCVLRKCAFAEEGQP-IKGAYLPSYDKVLLTD 88 (828)
Q Consensus 28 ~~~~i~Yhp~LNviL~~~~-~g~v~V~D~nSgviL~~~~ls~~~~~-~~~~~~~~~~~~~~~~ 88 (828)
.+..+.++|. |.+|+.+. +|.|+|||.+++.+++.... .... ..+.+.|....++++.
T Consensus 137 ~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~ 196 (289)
T cd00200 137 WVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTG--HTGEVNSVAFSPDGEKLLSSS 196 (289)
T ss_pred cEEEEEEcCc-CCEEEEEcCCCcEEEEEccccccceeEec--CccccceEEECCCcCEEEEec
Confidence 3678889998 55566655 99999999999988777652 2223 4456666665666654
No 13
>PTZ00421 coronin; Provisional
Probab=80.70 E-value=5 Score=46.88 Aligned_cols=57 Identities=11% Similarity=0.201 Sum_probs=43.8
Q ss_pred cceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEE
Q psy13379 29 PDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVL 85 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~ 85 (828)
+.+|.++|.-++|+..+.+|.|+|||+.+|.++++-.-.......++.+.|..+.++
T Consensus 171 V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 171 ITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII 227 (493)
T ss_pred eEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence 678999999999999999999999999999888764433222225677777766655
No 14
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=80.39 E-value=8.4 Score=36.83 Aligned_cols=58 Identities=19% Similarity=0.161 Sum_probs=44.0
Q ss_pred cceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCce-eEEeeCCCCeEEEEc
Q psy13379 29 PDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPI-KGAYLPSYDKVLLTD 88 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~-~~~~~~~~~~~~~~~ 88 (828)
+..+.++|.-+.|++.+.+|.|+|||.+++..++..... ...+ .+.+.|....++...
T Consensus 12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~ 70 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH--TGPVRDVAASADGTYLASGS 70 (289)
T ss_pred EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC--CcceeEEEECCCCCEEEEEc
Confidence 678999999899988888999999999998766654432 2345 778888775655543
No 15
>KOG1274|consensus
Probab=77.72 E-value=3.8 Score=50.72 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=47.3
Q ss_pred cceeeeecCCcEEEEEeecCeEEEEeccccceeeee-----cccCCCCc--eeEEeeCCCCeEEEE
Q psy13379 29 PDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKC-----AFAEEGQP--IKGAYLPSYDKVLLT 87 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~-----~ls~~~~~--~~~~~~~~~~~~~~~ 87 (828)
+..+-|||+-|.|-+.+.+|+|+|||.++|++.++- ....+..+ .+.++-|.++++++.
T Consensus 141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred eeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee
Confidence 568999999999999999999999999999998872 22333223 577888888887764
No 16
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=73.47 E-value=4.5 Score=26.37 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=24.1
Q ss_pred ecceeeeecCCcEEEEEeecCeEEEEe
Q psy13379 28 DPDSVIYHPNLNILIVLSRNAECIVVD 54 (828)
Q Consensus 28 ~~~~i~Yhp~LNviL~~~~~g~v~V~D 54 (828)
.+..+.++|..+.++..+.+|.++|||
T Consensus 14 ~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 14 PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 367889999999999999999999987
No 17
>KOG0278|consensus
Probab=70.23 E-value=14 Score=40.66 Aligned_cols=65 Identities=9% Similarity=0.043 Sum_probs=48.5
Q ss_pred eecceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEEEcCceee
Q psy13379 27 RDPDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLLTDTKSVG 93 (828)
Q Consensus 27 ~~~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (828)
.-++.+++.-.=+.||--+.++.|+.||..||.+.|+--+...- -...|-++.+-|-++++++|-
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~V--tSlEvs~dG~ilTia~gssV~ 208 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPV--TSLEVSQDGRILTIAYGSSVK 208 (334)
T ss_pred CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCC--cceeeccCCCEEEEecCceeE
Confidence 34788899999999999999999999999999999997766521 223444555555566665543
No 18
>KOG0286|consensus
Probab=68.21 E-value=12 Score=41.82 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=64.9
Q ss_pred ecceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEEEcCceeeeeeccCceeeehhh
Q psy13379 28 DPDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLLTDTKSVGVRSDYNGVLLLDTM 107 (828)
Q Consensus 28 ~~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ll~~~ 107 (828)
|+-+|.|||+=.-+---+.+|+++.||.-...=|+.|.-..+..+|...-++-++|+||+-. .| .++-+-|||
T Consensus 231 DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy------~d-~~c~vWDtl 303 (343)
T KOG0286|consen 231 DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY------DD-FTCNVWDTL 303 (343)
T ss_pred ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee------cC-CceeEeecc
Confidence 68899999999999999999999999999998888887666677788899999999999842 22 345677888
Q ss_pred hhhcc
Q psy13379 108 LQTCL 112 (828)
Q Consensus 108 l~~~~ 112 (828)
.+..+
T Consensus 304 k~e~v 308 (343)
T KOG0286|consen 304 KGERV 308 (343)
T ss_pred ccceE
Confidence 77654
No 19
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=67.28 E-value=9.6 Score=31.29 Aligned_cols=35 Identities=14% Similarity=0.367 Sum_probs=30.1
Q ss_pred CCCceeecceeeeecCCcEEEEEeecCeEEEEecc
Q psy13379 22 EGPIVRDPDSVIYHPNLNILIVLSRNAECIVVDIN 56 (828)
Q Consensus 22 ~~~~~~~~~~i~Yhp~LNviL~~~~~g~v~V~D~n 56 (828)
+..+..++..+.|.|..+.|-+.+.+|+|.|+..|
T Consensus 7 ~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 7 EKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34455567899999999999999999999999884
No 20
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.16 E-value=12 Score=39.20 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=29.4
Q ss_pred CceeecceeeeecCCcEEEEEeecCeEEEEecccccee
Q psy13379 24 PIVRDPDSVIYHPNLNILIVLSRNAECIVVDINSGCVL 61 (828)
Q Consensus 24 ~~~~~~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL 61 (828)
+|+.+..=++-..+-+-+|++|.+|.++|||+.++...
T Consensus 8 ~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 8 PIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred cEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence 34555555566777888999999999999999987443
No 21
>KOG0640|consensus
Probab=64.02 E-value=18 Score=40.91 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=43.8
Q ss_pred cceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCc---eeEEeeCCCCeEEEEcCc
Q psy13379 29 PDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQP---IKGAYLPSYDKVLLTDTK 90 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~---~~~~~~~~~~~~~~~~~~ 90 (828)
+++|.+||.=--||+-|.+..+++||+|+-.-.-++- |+.|- |...-.++.+++.+|-++
T Consensus 219 vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan--Pd~qht~ai~~V~Ys~t~~lYvTaSk 281 (430)
T KOG0640|consen 219 VRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN--PDDQHTGAITQVRYSSTGSLYVTASK 281 (430)
T ss_pred eeeEeecCCCceEEEecCCCceeEEeccceeEeeecC--cccccccceeEEEecCCccEEEEecc
Confidence 7899999999999999999999999999764333332 33222 544444566777777654
No 22
>KOG0295|consensus
Probab=63.57 E-value=12 Score=42.75 Aligned_cols=35 Identities=29% Similarity=0.465 Sum_probs=31.6
Q ss_pred cceeeeecCCcEEEEEeecCeEEEEeccccceeee
Q psy13379 29 PDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRK 63 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~ 63 (828)
+.+++|||++=+..+.|.+++++|||--+|.++.+
T Consensus 111 vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~ 145 (406)
T KOG0295|consen 111 VTRVIFHPSEALVVSASEDATIKVFDTETGELERS 145 (406)
T ss_pred eeeeeeccCceEEEEecCCceEEEEEccchhhhhh
Confidence 67899999999999999999999999999998544
No 23
>KOG0316|consensus
Probab=61.46 E-value=11 Score=41.09 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=46.3
Q ss_pred cceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCc--eeEEeeC---------CCCeEEEEc
Q psy13379 29 PDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQP--IKGAYLP---------SYDKVLLTD 88 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~--~~~~~~~---------~~~~~~~~~ 88 (828)
+.++.+-+.=|-.|+-+=+++++.+|-.+|.+|++|.= ++++. +.|...- ..++|+|||
T Consensus 186 it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG-hkn~eykldc~l~qsdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 186 ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG-HKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred ceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc-cccceeeeeeeecccceeEEeccCCceEEEEE
Confidence 67899999999999999999999999999999999763 33333 4444433 347888886
No 24
>PTZ00420 coronin; Provisional
Probab=60.91 E-value=27 Score=41.97 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=31.7
Q ss_pred cceeeeecCCcEEEEEeecCeEEEEeccccceeeee
Q psy13379 29 PDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKC 64 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~ 64 (828)
+.++.++|.-++|...+.+|.|+|||..+|.++++.
T Consensus 170 V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 170 LSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 678999999888877778999999999999998764
No 25
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=59.54 E-value=37 Score=36.63 Aligned_cols=69 Identities=22% Similarity=0.355 Sum_probs=43.4
Q ss_pred CCCceeecceeeeecCCcEEEEEeecC-eEEEEeccccceeeeecccCC--------CCceeEEeeCCCCeEEEEcCcee
Q psy13379 22 EGPIVRDPDSVIYHPNLNILIVLSRNA-ECIVVDINSGCVLRKCAFAEE--------GQPIKGAYLPSYDKVLLTDTKSV 92 (828)
Q Consensus 22 ~~~~~~~~~~i~Yhp~LNviL~~~~~g-~v~V~D~nSgviL~~~~ls~~--------~~~~~~~~~~~~~~~~~~~~~~~ 92 (828)
.+..+.|+.+|.|||..|-+||.+... .+.++| .+|.++....|.+. .|+=.+++-| .+++++...-.+
T Consensus 166 ~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvsEpNl 243 (248)
T PF06977_consen 166 DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVSEPNL 243 (248)
T ss_dssp HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEETTTE
T ss_pred ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEcCCce
Confidence 566778899999999999999998765 889999 88999999999873 2443344444 678888766544
No 26
>PTZ00421 coronin; Provisional
Probab=59.49 E-value=31 Score=40.57 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=35.9
Q ss_pred cceeeeecCC-cEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeCC
Q psy13379 29 PDSVIYHPNL-NILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPS 80 (828)
Q Consensus 29 ~~~i~Yhp~L-NviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~ 80 (828)
+..|.+||.- |+|+..+.+|+|+|||+++|..+....-+. +.-..+.+.|.
T Consensus 128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~-~~V~sla~spd 179 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS-DQITSLEWNLD 179 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC-CceEEEEEECC
Confidence 5678999975 788888889999999999998776543222 11234555554
No 27
>KOG0296|consensus
Probab=55.75 E-value=21 Score=40.84 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=39.4
Q ss_pred ceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEE
Q psy13379 30 DSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVL 85 (828)
Q Consensus 30 ~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~ 85 (828)
.++.+.+ .-.||..|.||.|+.||+-+|-.+-+|.=+-.+ -...+|.|..++|+
T Consensus 331 ~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~-Il~f~ls~~~~~vv 384 (399)
T KOG0296|consen 331 TKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG-ILDFALSPQKRLVV 384 (399)
T ss_pred EEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchh-eeEEEEcCCCcEEE
Confidence 3444444 668999999999999999999999988754322 35667777555554
No 28
>KOG0772|consensus
Probab=55.65 E-value=7.2 Score=46.12 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=23.0
Q ss_pred cceeeeecCCcEEEEEeecCeEEEE
Q psy13379 29 PDSVIYHPNLNILIVLSRNAECIVV 53 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~~~g~v~V~ 53 (828)
+..+.+||-||+|++-|.||.++||
T Consensus 460 vv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 460 VVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EEEEeecchhhheeeecCCCceEEE
Confidence 5678999999999999999999986
No 29
>KOG0266|consensus
Probab=54.43 E-value=37 Score=39.01 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=49.5
Q ss_pred ecceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEEEcC
Q psy13379 28 DPDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLLTDT 89 (828)
Q Consensus 28 ~~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~~~~ 89 (828)
++-.+.++|-=|.|+-.+.+|+|+|||+..|..+..- .+..++|.+..++..+.+|++-+
T Consensus 248 ~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l--~~hs~~is~~~f~~d~~~l~s~s 307 (456)
T KOG0266|consen 248 YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL--KGHSDGISGLAFSPDGNLLVSAS 307 (456)
T ss_pred ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee--eccCCceEEEEECCCCCEEEEcC
Confidence 3578999999899999999999999999999888764 44445788888888888887754
No 30
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=53.79 E-value=50 Score=35.66 Aligned_cols=63 Identities=19% Similarity=0.379 Sum_probs=45.5
Q ss_pred eeecceeeeecCCcEEEEEeecC-eEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEEEcCc
Q psy13379 26 VRDPDSVIYHPNLNILIVLSRNA-ECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLLTDTK 90 (828)
Q Consensus 26 ~~~~~~i~Yhp~LNviL~~~~~g-~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~~~~~ 90 (828)
..|+..|.|.|.-|.|.+++.+. .|.-+|- .|.||++..|.+-+..=.++|+ ..+++++++.+
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er 84 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEER 84 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE--STTEEEEEETT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcC
Confidence 34688999999999999888775 7777885 6999999999886655566776 67788888764
No 31
>PTZ00420 coronin; Provisional
Probab=53.72 E-value=39 Score=40.60 Aligned_cols=37 Identities=8% Similarity=-0.007 Sum_probs=28.7
Q ss_pred ecceeeeecCCcEEE-EEeecCeEEEEeccccceeeee
Q psy13379 28 DPDSVIYHPNLNILI-VLSRNAECIVVDINSGCVLRKC 64 (828)
Q Consensus 28 ~~~~i~Yhp~LNviL-~~~~~g~v~V~D~nSgviL~~~ 64 (828)
.+..|.+||.-+.+| ..+.+|+|+|||+.+|..+.+.
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i 164 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI 164 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 377899999765554 4567999999999999766543
No 32
>KOG0266|consensus
Probab=53.21 E-value=31 Score=39.64 Aligned_cols=72 Identities=24% Similarity=0.311 Sum_probs=45.7
Q ss_pred cceeeeecCCcEEEEEeecCeEEEEecccccee--------------eeecccCCCCceeEEeeCCCC-eEEEEcCceee
Q psy13379 29 PDSVIYHPNLNILIVLSRNAECIVVDINSGCVL--------------RKCAFAEEGQPIKGAYLPSYD-KVLLTDTKSVG 93 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL--------------~~~~ls~~~~~~~~~~~~~~~-~~~~~~~~~~~ 93 (828)
+..+.+-+.-|.|+..+.+|.|+|||+.+|.++ ....+++++.- .+.+.-| .|-+||-....
T Consensus 291 is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~---ll~~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 291 ISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY---LLSASLDRTLKLWDLRSGK 367 (456)
T ss_pred eEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE---EEEecCCCeEEEEEccCCc
Confidence 456778888999999999999999999999953 22333333322 2223334 56666666555
Q ss_pred eeeccCceee
Q psy13379 94 VRSDYNGVLL 103 (828)
Q Consensus 94 ~r~~~~~~~l 103 (828)
+...|.|...
T Consensus 368 ~~~~~~~~~~ 377 (456)
T KOG0266|consen 368 SVGTYTGHSN 377 (456)
T ss_pred ceeeecccCC
Confidence 5555554443
No 33
>KOG4765|consensus
Probab=53.03 E-value=6.7 Score=44.82 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=38.7
Q ss_pred CCCccccccccc--cccccccccccCChHHHHhCCeEeCCCCCCCCeEEeeccCCccc
Q psy13379 341 TDSGTGRFLSSA--QWYRDDDRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLV 396 (828)
Q Consensus 341 ~ss~e~RLkTF~--nWP~~~kr~~~vspekLAkAGFYYtpt~~G~D~VkCF~Cg~~L~ 396 (828)
+..+-.|++||+ +|... ...+++-..|+.||... ..|.++|-+|+..|.
T Consensus 51 red~lrRl~Tfks~tWygk---p~~iS~lnCA~~GWv~v----d~D~lkCe~C~a~L~ 101 (419)
T KOG4765|consen 51 REDLLRRLATFKSRTWYGK---PFEISPLNCAKYGWVCV----DCDMLKCESCGAFLC 101 (419)
T ss_pred HHHHHHHHHhccCchhccC---CcccchHHHhhcCeeec----cCCeeehhhhhhHHh
Confidence 345678999997 56532 24688999999999987 589999999997664
No 34
>KOG0288|consensus
Probab=52.79 E-value=23 Score=41.16 Aligned_cols=61 Identities=15% Similarity=0.210 Sum_probs=50.4
Q ss_pred ecceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCc-eeEEeeCCCCeEEEEc
Q psy13379 28 DPDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQP-IKGAYLPSYDKVLLTD 88 (828)
Q Consensus 28 ~~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~-~~~~~~~~~~~~~~~~ 88 (828)
|...+++-|.---+++-+.+|+|+||++.+|.+...-+++..+.. ..++|.|+..-+|=+|
T Consensus 389 DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 467888999999999999999999999999999998888887744 6778888766655444
No 35
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=52.18 E-value=26 Score=35.25 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=32.0
Q ss_pred cceeeeecCCcEEEEEe-ecCeEEEEeccccceeeeecccCCC
Q psy13379 29 PDSVIYHPNLNILIVLS-RNAECIVVDINSGCVLRKCAFAEEG 70 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~-~~g~v~V~D~nSgviL~~~~ls~~~ 70 (828)
+..+.++|.-..|++.. .+|+|+|||..+|.++++-.+....
T Consensus 251 ~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 293 (300)
T TIGR03866 251 VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLP 293 (300)
T ss_pred cceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccccc
Confidence 44677888777665543 4799999999999999988876544
No 36
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=52.14 E-value=24 Score=27.04 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=26.9
Q ss_pred cEEEEEeecCeEEEEeccccceeeeecccCC
Q psy13379 39 NILIVLSRNAECIVVDINSGCVLRKCAFAEE 69 (828)
Q Consensus 39 NviL~~~~~g~v~V~D~nSgviL~~~~ls~~ 69 (828)
|.|.+-+.+|.++-+|+.+|.++=++...+.
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEESSSG
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeCCCC
Confidence 5677889999999999999999988877663
No 37
>KOG1273|consensus
Probab=52.01 E-value=30 Score=39.23 Aligned_cols=58 Identities=21% Similarity=0.282 Sum_probs=49.7
Q ss_pred eeecceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCc-eeEEeeCCCCeEEE
Q psy13379 26 VRDPDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQP-IKGAYLPSYDKVLL 86 (828)
Q Consensus 26 ~~~~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~-~~~~~~~~~~~~~~ 86 (828)
+.-+.++++-+-=--||-.+.+.+|+.||+-+|++|+.-+++. + ..+.|.|..+...+
T Consensus 65 ~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~s---pv~~~q~hp~k~n~~v 123 (405)
T KOG1273|consen 65 VRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDS---PVWGAQWHPRKRNKCV 123 (405)
T ss_pred ccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccC---ccceeeeccccCCeEE
Confidence 3447889999998899999999999999999999999999987 6 67889998866544
No 38
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=50.74 E-value=22 Score=25.55 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=20.6
Q ss_pred EEEEEeecCeEEEEeccccceeee
Q psy13379 40 ILIVLSRNAECIVVDINSGCVLRK 63 (828)
Q Consensus 40 viL~~~~~g~v~V~D~nSgviL~~ 63 (828)
.+.+.+.+|.+..+|+.+|.++-+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 577888899999999999988754
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=50.74 E-value=50 Score=40.38 Aligned_cols=59 Identities=8% Similarity=0.067 Sum_probs=41.6
Q ss_pred cceeeeecCC-cEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEEEc
Q psy13379 29 PDSVIYHPNL-NILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLLTD 88 (828)
Q Consensus 29 ~~~i~Yhp~L-NviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~~~ 88 (828)
+..++++|.. +.|+..+.+|.|+|||+.+|..++...- +.+.-..+.+.|..+.+|++-
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~-H~~~V~~l~~~p~~~~~L~Sg 594 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASG 594 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC-CCCCEEEEEEcCCCCCEEEEE
Confidence 4578888764 5666777799999999999988876543 223235667777766666654
No 40
>PLN00181 protein SPA1-RELATED; Provisional
Probab=49.01 E-value=52 Score=40.25 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=39.4
Q ss_pred cceeeeec-CCcEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEEE
Q psy13379 29 PDSVIYHP-NLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLLT 87 (828)
Q Consensus 29 ~~~i~Yhp-~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~~ 87 (828)
+.++.+|| .-++|+..+.+|.|+|||+++|..+++... ......+.+.+..++.|++
T Consensus 578 V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~--~~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 578 VWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT--KANICCVQFPSESGRSLAF 635 (793)
T ss_pred EEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec--CCCeEEEEEeCCCCCEEEE
Confidence 66888997 567778888899999999999988876542 2222344454555555443
No 41
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=48.99 E-value=87 Score=31.52 Aligned_cols=58 Identities=28% Similarity=0.340 Sum_probs=40.2
Q ss_pred cceeeeecCCcEEEEEee-cCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEEEc
Q psy13379 29 PDSVIYHPNLNILIVLSR-NAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLLTD 88 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~~-~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~~~ 88 (828)
...+.++|.-+.+++.+. +|.++|||..++.++....... ..-.+.+.|....++++.
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~ 133 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV--EPEGMAVSPDGKIVVNTS 133 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC--CcceEEECCCCCEEEEEe
Confidence 456889999887777654 7899999999887776554322 123456777666666554
No 42
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=48.10 E-value=1e+02 Score=30.79 Aligned_cols=63 Identities=22% Similarity=0.246 Sum_probs=44.2
Q ss_pred CcEEEEEeecCeEEEEeccccceeeeecccCCCC--------ceeEEeeCCCCeEEEEcCce--eeeeeccCce
Q psy13379 38 LNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQ--------PIKGAYLPSYDKVLLTDTKS--VGVRSDYNGV 101 (828)
Q Consensus 38 LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~--------~~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~ 101 (828)
-+.+++.+.+|.|.++|+.+|.++-++.+..... .+.+..+-..|+|+++.... +.+ ---+|.
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~ 194 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGE 194 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTE
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCC
Confidence 6778888889999999999999999998844221 13455666667888877666 444 224444
No 43
>KOG0282|consensus
Probab=47.88 E-value=17 Score=42.75 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=44.5
Q ss_pred eeeecCC-cEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEEE
Q psy13379 32 VIYHPNL-NILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLLT 87 (828)
Q Consensus 32 i~Yhp~L-NviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~~ 87 (828)
+-|||.- |+.|+-+++|.|+-||+.||.|+|+|-=.- ++-..+.|++.+-+.+.+
T Consensus 305 vkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL-g~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 305 VKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL-GAILDITFVDEGRRFISS 360 (503)
T ss_pred eecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh-hheeeeEEccCCceEeee
Confidence 4579988 999999999999999999999999986443 113677888887776654
No 44
>KOG4765|consensus
Probab=46.57 E-value=23 Score=40.78 Aligned_cols=50 Identities=18% Similarity=0.007 Sum_probs=39.8
Q ss_pred CchhhcccHHHHHhccc--CCCCCCCCCCCHHHHHhCCeEeCCCCCCCCeEEEeeee
Q psy13379 236 DHRNLMFSEAARRETFA--KWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCFTIL 290 (828)
Q Consensus 236 ~~~~dM~sEe~RL~TF~--nWP~~~~~~ispe~LArAGFYYTPtg~~~D~VkCF~Cg 290 (828)
-.-.++..+-.||+||+ +|-.. .+.+++...|+-|.--. ..|+++|-+|+
T Consensus 46 ~k~wdred~lrRl~Tfks~tWygk-p~~iS~lnCA~~GWv~v----d~D~lkCe~C~ 97 (419)
T KOG4765|consen 46 CKPWDREDLLRRLATFKSRTWYGK-PFEISPLNCAKYGWVCV----DCDMLKCESCG 97 (419)
T ss_pred cCcccHHHHHHHHHhccCchhccC-CcccchHHHhhcCeeec----cCCeeehhhhh
Confidence 34446888889999998 67443 24699999999999766 35999999997
No 45
>PF11682 DUF3279: Protein of unknown function (DUF3279); InterPro: IPR021696 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=46.19 E-value=19 Score=35.65 Aligned_cols=49 Identities=31% Similarity=0.596 Sum_probs=35.5
Q ss_pred cCChHHHHhCCeEeCCCCCCCCeEEeeccCCcccCc--CCCCCchhhccccCC------CCCcccc
Q psy13379 363 WALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCW--EPTDEPWAEHERHSP------CCPFVKG 420 (828)
Q Consensus 363 ~vspekLAkAGFYYtpt~~G~D~VkCF~Cg~~L~~W--E~~DDP~~EH~rhsP------~C~Fvk~ 420 (828)
.+.+.+.+.+ ..|...|.+|+..|.-= ..+..||-||..+.- .|+|+.-
T Consensus 15 ~v~A~~a~~~---------~~~~~tC~~Cg~~L~lh~~~~~~~pWFEH~~~~~~~~~l~~C~yl~p 71 (128)
T PF11682_consen 15 FVGARTAASA---------PYDHWTCHSCGCPLILHPGTDTEPPWFEHDQHSLAENGLMQCPYLDP 71 (128)
T ss_pred EEehhhhhhC---------CCCeEEEecCCceEEEecCCcCCCCccccCccccChhhcccCceECc
Confidence 4555666655 37899999999877633 456789999987752 4888864
No 46
>KOG0275|consensus
Probab=44.37 E-value=61 Score=36.97 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=45.6
Q ss_pred ecceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCc-eeEEeeCCC
Q psy13379 28 DPDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQP-IKGAYLPSY 81 (828)
Q Consensus 28 ~~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~-~~~~~~~~~ 81 (828)
.+.+..|-+.=|-|+-++++|+|+||+..+|.-|++++--++.-. -.+..+|.+
T Consensus 350 yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKn 404 (508)
T KOG0275|consen 350 YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKN 404 (508)
T ss_pred cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCC
Confidence 466778999999999999999999999999999999887766544 566777776
No 47
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=43.75 E-value=60 Score=35.49 Aligned_cols=31 Identities=10% Similarity=0.029 Sum_probs=27.5
Q ss_pred cEEEEEeecCeEEEEeccccceeeeecccCC
Q psy13379 39 NILIVLSRNAECIVVDINSGCVLRKCAFAEE 69 (828)
Q Consensus 39 NviL~~~~~g~v~V~D~nSgviL~~~~ls~~ 69 (828)
|.|++.+.+|.|+++|..+|.++.+..+...
T Consensus 321 ~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSREDGSFVARLKTDGS 351 (377)
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 5788889999999999999999998887664
No 48
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=42.30 E-value=58 Score=32.47 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=35.7
Q ss_pred CCcEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEEEc
Q psy13379 37 NLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLLTD 88 (828)
Q Consensus 37 ~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~~~ 88 (828)
.-+.+++.+.+|.+..||+.+|.++-+..+.. ++....+...++|++..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~---~~~~~~~~~~~~v~v~~ 83 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPG---PISGAPVVDGGRVYVGT 83 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSS---CGGSGEEEETTEEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccc---cccceeeeccccccccc
Confidence 45667777899999999999999999988844 22223355566666654
No 49
>KOG0289|consensus
Probab=41.26 E-value=56 Score=38.38 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=46.1
Q ss_pred eecceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEE
Q psy13379 27 RDPDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLL 86 (828)
Q Consensus 27 ~~~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~ 86 (828)
++..++.+||-=+++-.-+.+|.|+|||.-|+. ...++.+...+|+-.=+..+|--|.
T Consensus 348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~La 405 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLA 405 (506)
T ss_pred ceeEEeeEcCCceEEeccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEE
Confidence 568899999999999999999999999999998 4556666655677776666654443
No 50
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=41.25 E-value=60 Score=39.04 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=54.4
Q ss_pred eecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEEEcCceeeeeeccCceeeehhhhhhccc
Q psy13379 34 YHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLLTDTKSVGVRSDYNGVLLLDTMLQTCLK 113 (828)
Q Consensus 34 Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ll~~~l~~~~~ 113 (828)
-.|.=--+++-|.+|+|++||.+.++-+-+.. +=.+..+++-|+..=+++.+.+ +=.=+.|.+|..
T Consensus 267 ~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka---~~~P~~iaWHp~gai~~V~s~q--------GelQ~FD~ALsp--- 332 (545)
T PF11768_consen 267 RSPSEDKLVLGCEDGSIILYDTTRGVTLLAKA---EFIPTLIAWHPDGAIFVVGSEQ--------GELQCFDMALSP--- 332 (545)
T ss_pred cCcccceEEEEecCCeEEEEEcCCCeeeeeee---cccceEEEEcCCCcEEEEEcCC--------ceEEEEEeecCc---
Confidence 34444568899999999999999997664422 1224667888888877777654 234578999865
Q ss_pred CCCCceEEEEehhHH
Q psy13379 114 SKNNPVKLEMLVSEA 128 (828)
Q Consensus 114 ~~~~~~~~e~~~~~~ 128 (828)
|++.++.+|+
T Consensus 333 -----i~~qLlsEd~ 342 (545)
T PF11768_consen 333 -----IKMQLLSEDA 342 (545)
T ss_pred -----cceeeccccC
Confidence 7788877776
No 51
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=39.86 E-value=16 Score=43.31 Aligned_cols=34 Identities=18% Similarity=0.382 Sum_probs=22.3
Q ss_pred ccccccceeEEEEEecchhhhhhhhhhhhhhhccCC
Q psy13379 170 KSAKSQKWNIICLELKHASFKTACYSLVCELKRQNR 205 (828)
Q Consensus 170 ~~~k~~~~~~~~~~~~~~~~k~~~~~~~~e~~~~~~ 205 (828)
+|++ ..||||-||+|..+|--| +-.++-||..||
T Consensus 480 NGaM-a~WnTvFVEVPl~TFNPV-KTVnDLLr~~HQ 513 (513)
T PF14134_consen 480 NGAM-ADWNTVFVEVPLITFNPV-KTVNDLLRPEHQ 513 (513)
T ss_pred cchh-cCCceEEEEeccccCCCc-cchhhhcccccC
Confidence 4444 479999999999765333 223666666554
No 52
>KOG0273|consensus
Probab=38.11 E-value=64 Score=38.20 Aligned_cols=62 Identities=23% Similarity=0.281 Sum_probs=39.1
Q ss_pred eeeecCCcEEEE-EeecCeEEEEeccccceeeeecccCCCCceeEEeeCC---------CCeEEEEcCceeee
Q psy13379 32 VIYHPNLNILIV-LSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPS---------YDKVLLTDTKSVGV 94 (828)
Q Consensus 32 i~Yhp~LNviL~-~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 94 (828)
+.-+|+-|..|+ .+.+++|++|||-+|+++++-+=+.++ .-..++.|+ .+.|-+|+++.=-+
T Consensus 415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p-VysvafS~~g~ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 415 VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP-VYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred ccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc-eEEEEecCCCcEEEecCCCCeeEeccccchhe
Confidence 446788887655 567889999999999999995433322 122233322 35566666655433
No 53
>PF08600 Rsm1: Rsm1-like; InterPro: IPR013909 This entry contains Nuclear-interacting partner of ALK (NIPA) and NIPA like proteins, as well as mRNA export factor Rsm1, all of which contain a C3HC-type zinc finger. The domain represented in this entry is found C-terminal to the zinc-finger like domain IPR012935 from INTERPRO. Rsm1 is involved in mRNA export from the nucleus []. NIPA is an essential component of an SCF-type E3 ligase complex, SCF(NIPA), a complex that controls mitotic entry by mediating ubiquitination and subsequent degradation of cyclin B1 (CCNB1). Its cell-cycle-dependent phosphorylation regulates the assembly of the SCF(NIPA) complex, restricting CCNB1 ubiquitination activity to interphase. Its inactivation results in nuclear accumulation of CCNB1 in interphase and premature mitotic entry [].
Probab=37.72 E-value=21 Score=32.94 Aligned_cols=36 Identities=28% Similarity=0.491 Sum_probs=26.6
Q ss_pred CCeEEeeccCCcccCcCCC------------CCchhhccccCCCCCccccc
Q psy13379 383 DDRAMCFTCIVCLVCWEPT------------DEPWAEHERHSPCCPFVKGE 421 (828)
Q Consensus 383 ~D~VkCF~Cg~~L~~WE~~------------DDP~~EH~rhsP~C~Fvk~~ 421 (828)
...+.|-+|...+.=|.-. =||..||+.| ||++...
T Consensus 17 ~~~~~C~~C~Rr~GLW~f~~~~ss~~~~~~~~d~~~eHr~~---CPwv~~~ 64 (91)
T PF08600_consen 17 LGLLSCSYCFRRLGLWMFKSKESSDSDPMSPFDPLEEHREY---CPWVNPS 64 (91)
T ss_pred cCeEEccccCcEeeeeecccCccCCCCcCCCCCCccccccc---CCccCCc
Confidence 3589999999988777311 3688888755 9999753
No 54
>KOG0310|consensus
Probab=36.77 E-value=96 Score=36.78 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=42.0
Q ss_pred cceeeeecCCcEEEEEeecC-eEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEEEc
Q psy13379 29 PDSVIYHPNLNILIVLSRNA-ECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLLTD 88 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~~~g-~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~~~ 88 (828)
+.++-|+|-=|++|+.++++ .+++||++.+.+ |..-..++.-.=-+...|.+|.++++-
T Consensus 113 v~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtG 172 (487)
T KOG0310|consen 113 VHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTG 172 (487)
T ss_pred eeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEec
Confidence 34578999999999999887 567888888886 655444544333456777777776653
No 55
>KOG1273|consensus
Probab=36.20 E-value=94 Score=35.52 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=58.7
Q ss_pred cCCCceeecceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEEEcCceeeee
Q psy13379 21 EEGPIVRDPDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLLTDTKSVGVR 95 (828)
Q Consensus 21 ~~~~~~~~~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~r 95 (828)
.+|....-....+|++.=|.|+.-|+-|.+.|||+.|-.+.++.+..- .|.||-.-++-.++-|+.++.-=-+|
T Consensus 148 ~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR 221 (405)
T KOG1273|consen 148 DDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIR 221 (405)
T ss_pred CccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCceEE
Confidence 345444445566899999999999999999999999999999988876 55688888888888877776543333
No 56
>KOG1036|consensus
Probab=35.81 E-value=1e+02 Score=34.85 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=45.8
Q ss_pred CCceeecceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCc-eeEEeeC
Q psy13379 23 GPIVRDPDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQP-IKGAYLP 79 (828)
Q Consensus 23 ~~~~~~~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~-~~~~~~~ 79 (828)
-|+---+.++.|-|+-|-||+.+=+|++++||+..-..+++....+ + +.|.|.+
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~---plL~c~F~d 64 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGA---PLLDCAFAD 64 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCC---ceeeeeccC
Confidence 3444458899999999999999999999999999888888887776 6 7888877
No 57
>KOG0292|consensus
Probab=35.41 E-value=35 Score=43.03 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=33.0
Q ss_pred cceeeeecCCcEEEEEeecCeEEEEeccccceeeee
Q psy13379 29 PDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKC 64 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~ 64 (828)
+.++++||+-|.||-.+.+++++|||.++-..+|+-
T Consensus 253 Vssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 253 VSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred cceEEecCccceeEecCCCccEEEEecccccceeee
Confidence 568999999999999999999999999988888873
No 58
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=34.54 E-value=1.2e+02 Score=22.67 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=23.3
Q ss_pred cEEEEEe-ecCeEEEEeccccceeeeecccCCC
Q psy13379 39 NILIVLS-RNAECIVVDINSGCVLRKCAFAEEG 70 (828)
Q Consensus 39 NviL~~~-~~g~v~V~D~nSgviL~~~~ls~~~ 70 (828)
+.|.+.. ..++|.|+|++++.++.+......+
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P 36 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP 36 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC
Confidence 3344433 3679999999999999998775433
No 59
>KOG0647|consensus
Probab=34.41 E-value=86 Score=35.54 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=53.0
Q ss_pred hcCCCceeecceeeeec-CCcEEEEEeecCeEEEEecc-ccceeeeecccCCCCceeEEeeCCCCeEEEEc
Q psy13379 20 EEEGPIVRDPDSVIYHP-NLNILIVLSRNAECIVVDIN-SGCVLRKCAFAEEGQPIKGAYLPSYDKVLLTD 88 (828)
Q Consensus 20 ~~~~~~~~~~~~i~Yhp-~LNviL~~~~~g~v~V~D~n-SgviL~~~~ls~~~~~~~~~~~~~~~~~~~~~ 88 (828)
|-.+|..--+..|.+-| .=|.+.+-+=+|+|++||++ +|...-+.+.+.++-.+.+.+--..-||+..+
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~ 91 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG 91 (347)
T ss_pred ecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec
Confidence 33455555577888889 44555566679999999999 78888899999888668888888888887754
No 60
>cd01211 GAPCenA GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA is a centrosome-associated GTPase activating protein (GAP) for rab 6. It consists of an N-terminal PTB domain and a C-terminal TBC domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=34.37 E-value=40 Score=33.45 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=26.0
Q ss_pred CCcEEEEEe--ecCeEEEEeccccceeeeeccc
Q psy13379 37 NLNILIVLS--RNAECIVVDINSGCVLRKCAFA 67 (828)
Q Consensus 37 ~LNviL~~~--~~g~v~V~D~nSgviL~~~~ls 67 (828)
.++|.|.+- +.|+|+++|..|++.+.++.+.
T Consensus 38 ~i~Vtl~Vp~~seG~V~l~D~~t~~~ias~~I~ 70 (125)
T cd01211 38 TINVTLVVPNNIEGTVKLIDAQSNKVIASFSIV 70 (125)
T ss_pred CeEEEEEecCCCCceEEEEcCCCCcEEEEEEEE
Confidence 567777776 8999999999999999997654
No 61
>KOG1274|consensus
Probab=33.16 E-value=91 Score=39.46 Aligned_cols=63 Identities=13% Similarity=0.067 Sum_probs=47.9
Q ss_pred cceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCc-eeEEeeCC---------CCeEEEEcCce
Q psy13379 29 PDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQP-IKGAYLPS---------YDKVLLTDTKS 91 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~-~~~~~~~~---------~~~~~~~~~~~ 91 (828)
+....+||--..+++.+.++.|+||+.+++..+-+.+...-.++ .-+.+-|. .++|++||...
T Consensus 191 ~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 191 CTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 55677999999999999999999999999998888766655554 33333333 26788888764
No 62
>KOG1188|consensus
Probab=33.14 E-value=72 Score=36.54 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=30.2
Q ss_pred cEEEEEeecCeEEEEeccccceeeeecccCCCCc
Q psy13379 39 NILIVLSRNAECIVVDINSGCVLRKCAFAEEGQP 72 (828)
Q Consensus 39 NviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~ 72 (828)
|.+++-.+||+|++||--+|-.|+..+..+..-+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N 74 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTN 74 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCccc
Confidence 7799999999999999999999999988876544
No 63
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=32.43 E-value=83 Score=35.00 Aligned_cols=31 Identities=10% Similarity=0.048 Sum_probs=27.5
Q ss_pred CcEEEEEeecCeEEEEeccccceeeeecccC
Q psy13379 38 LNILIVLSRNAECIVVDINSGCVLRKCAFAE 68 (828)
Q Consensus 38 LNviL~~~~~g~v~V~D~nSgviL~~~~ls~ 68 (828)
-+.|++.+.+|.+.++|+.+|.++.+..+.+
T Consensus 335 ~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~ 365 (394)
T PRK11138 335 NGYLVVGDSEGYLHWINREDGRFVAQQKVDS 365 (394)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence 3678899999999999999999999988854
No 64
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=32.16 E-value=57 Score=33.45 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=18.5
Q ss_pred cccccccccCCccceEEEEEEEE
Q psy13379 645 EHVNREETENVPRPCLIVGARMK 667 (828)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~ 667 (828)
..+.|..-...+|+|+|||-.-+
T Consensus 119 ~~iSR~~lg~~~R~CliC~~~Ak 141 (165)
T TIGR03124 119 KSLSRTDLGLPPRKCLLCEEDAK 141 (165)
T ss_pred CCcCHHHcCCCCCeeecCCchHH
Confidence 45788888899999999985433
No 65
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=32.14 E-value=2.3e+02 Score=28.92 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=44.5
Q ss_pred ceeeeecCCcEEEEEee---cCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEEEcCceeeeeec
Q psy13379 30 DSVIYHPNLNILIVLSR---NAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLLTDTKSVGVRSD 97 (828)
Q Consensus 30 ~~i~Yhp~LNviL~~~~---~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 97 (828)
-.|.|.|.=+.|++..- +|.+.+||+++..++++..-.. -..+.+-|+..-++.+.+ .--.|.|
T Consensus 104 n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~---~t~~~WsPdGr~~~ta~t-~~r~~~d 170 (194)
T PF08662_consen 104 NTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD---ATDVEWSPDGRYLATATT-SPRLRVD 170 (194)
T ss_pred eEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc---EEEEEEcCCCCEEEEEEe-ccceecc
Confidence 46888888887777652 5789999999998887754322 367788887777766654 3234443
No 66
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=31.84 E-value=2.1e+02 Score=31.17 Aligned_cols=85 Identities=13% Similarity=0.202 Sum_probs=65.5
Q ss_pred ecceeeeecCCcEEEEEeecCeEEEEeccccceeee--ecccCC--CCceeEEeeCCCCeEEEEcCceeeeeec--cCce
Q psy13379 28 DPDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRK--CAFAEE--GQPIKGAYLPSYDKVLLTDTKSVGVRSD--YNGV 101 (828)
Q Consensus 28 ~~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~--~~ls~~--~~~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~ 101 (828)
.+..|=|.|..++|..+++.|.++.+|..+|+--.- +.++.. +..+..-|.|.-|+|=+.-...-.+|-+ .+.+
T Consensus 28 ~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~~GqNlR~npdtGav 107 (236)
T PF14339_consen 28 SLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSNTGQNLRLNPDTGAV 107 (236)
T ss_pred eEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEccCCcEEEECCCCCCc
Confidence 367889999999999999999999999999974333 445433 2247889999999998886677777776 4455
Q ss_pred eeehhhhhhcc
Q psy13379 102 LLLDTMLQTCL 112 (828)
Q Consensus 102 ~ll~~~l~~~~ 112 (828)
...|+.|.-+-
T Consensus 108 ~~~Dg~L~y~~ 118 (236)
T PF14339_consen 108 TIVDGNLAYAA 118 (236)
T ss_pred eeccCccccCC
Confidence 67887776654
No 67
>KOG1446|consensus
Probab=30.75 E-value=1.7e+02 Score=33.21 Aligned_cols=58 Identities=12% Similarity=0.183 Sum_probs=46.0
Q ss_pred ecceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCc--eeEEeeCCCCeEE
Q psy13379 28 DPDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQP--IKGAYLPSYDKVL 85 (828)
Q Consensus 28 ~~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~--~~~~~~~~~~~~~ 85 (828)
|...|=|-|.==.||+-|.++.++|+||=+|.++++-..-+.+++ +...|-|...=|+
T Consensus 189 ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl 248 (311)
T KOG1446|consen 189 EWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVL 248 (311)
T ss_pred ceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEE
Confidence 456677888888999999999999999999999999766665554 6677777664333
No 68
>KOG0310|consensus
Probab=30.42 E-value=87 Score=37.13 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=31.6
Q ss_pred cceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCC
Q psy13379 29 PDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEE 69 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~ 69 (828)
+.+++|.|+= .+++.+.-.+|||||..+|-.|=..+.|+.
T Consensus 199 Ve~vl~lpsg-s~iasAgGn~vkVWDl~~G~qll~~~~~H~ 238 (487)
T KOG0310|consen 199 VESVLALPSG-SLIASAGGNSVKVWDLTTGGQLLTSMFNHN 238 (487)
T ss_pred eeeEEEcCCC-CEEEEcCCCeEEEEEecCCceehhhhhccc
Confidence 5689999974 455566666999999999998888888753
No 69
>KOG1407|consensus
Probab=29.91 E-value=1.3e+02 Score=33.79 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=41.6
Q ss_pred cceeeeecCCcEEEEEe-ecCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEEEc
Q psy13379 29 PDSVIYHPNLNILIVLS-RNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLLTD 88 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~-~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~~~ 88 (828)
+..++.||.-+=+++.+ .+-+|++||+-+|...+.-.... .+|-+.|-|....+.+-+
T Consensus 67 vdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~--eni~i~wsp~g~~~~~~~ 125 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKG--ENINITWSPDGEYIAVGN 125 (313)
T ss_pred hhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccC--cceEEEEcCCCCEEEEec
Confidence 44567777665555544 44599999999998887766555 357788999887776654
No 70
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.11 E-value=1.9e+02 Score=32.66 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=52.4
Q ss_pred CCceeecceeeeecCCcEEEEEeecC-eEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEEEcCceeeeeec
Q psy13379 23 GPIVRDPDSVIYHPNLNILIVLSRNA-ECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLLTDTKSVGVRSD 97 (828)
Q Consensus 23 ~~~~~~~~~i~Yhp~LNviL~~~~~g-~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 97 (828)
-.+-.++=||.+++.-+.|.+.|-.| .|.|||..||.++....|.. . |--.+..+..+++++...-++.+
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D---~--cGva~~~~~f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD---A--CGVAPTDDGFLVSSGQGQLIRLS 283 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc---e--eeeeecCCceEEeCCCccEEEcc
Confidence 45667899999999999999998776 89999999999999988876 2 22223334477777776555544
No 71
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=29.07 E-value=1.7e+02 Score=32.02 Aligned_cols=58 Identities=29% Similarity=0.368 Sum_probs=42.8
Q ss_pred ceeecceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeC-CCCeEEEEc
Q psy13379 25 IVRDPDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLP-SYDKVLLTD 88 (828)
Q Consensus 25 ~~~~~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~-~~~~~~~~~ 88 (828)
|..-+.+++|+. +-||++..+| |-|+++.+|.++|+-..- +++.+ ++|- +.++|+++-
T Consensus 242 w~~~p~~~~~~~--pyll~~~~~~-ievr~l~~~~l~q~i~~~-~~~~~--r~L~~~~~~I~~~s 300 (302)
T smart00036 242 WEFMPESFAYHS--PYLLAFHDNG-IEIRSIKTGELLQELADR-ETRKI--RLLGSSDRKILLSS 300 (302)
T ss_pred cCCcccEEEEEC--CEEEEEcCCc-EEEEECCCCceEEEEecC-CCcce--EEEecCCCeEEEEe
Confidence 455578999996 8899998888 999999999999886653 34443 3333 667777653
No 72
>KOG3497|consensus
Probab=27.92 E-value=24 Score=31.20 Aligned_cols=14 Identities=43% Similarity=0.902 Sum_probs=11.8
Q ss_pred EEeeccCCcccC-cC
Q psy13379 386 AMCFTCIVCLVC-WE 399 (828)
Q Consensus 386 VkCF~Cg~~L~~-WE 399 (828)
++||.||..+.+ |+
T Consensus 5 iRCFtCGKvig~KWe 19 (69)
T KOG3497|consen 5 IRCFTCGKVIGDKWE 19 (69)
T ss_pred eEeeeccccccccHH
Confidence 899999999873 65
No 73
>KOG0284|consensus
Probab=27.19 E-value=92 Score=36.46 Aligned_cols=62 Identities=24% Similarity=0.284 Sum_probs=47.7
Q ss_pred eecceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEEEcCc
Q psy13379 27 RDPDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLLTDTK 90 (828)
Q Consensus 27 ~~~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~~~~~ 90 (828)
-|++++-+||.-..|...+.+..|+.||.-||.=|.+.. .+++......+.|.. ..|+|-++
T Consensus 223 wdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~-N~Llt~sk 284 (464)
T KOG0284|consen 223 WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNG-NWLLTGSK 284 (464)
T ss_pred CCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCC-CeeEEccC
Confidence 478999999999999999999999999999998776643 233333666666665 66666554
No 74
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=26.99 E-value=1.9e+02 Score=32.53 Aligned_cols=69 Identities=26% Similarity=0.286 Sum_probs=51.8
Q ss_pred ecceeeeecCCcEEEEEee---cCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEEEcCceeeeeeccCceeee
Q psy13379 28 DPDSVIYHPNLNILIVLSR---NAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLLTDTKSVGVRSDYNGVLLL 104 (828)
Q Consensus 28 ~~~~i~Yhp~LNviL~~~~---~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ll 104 (828)
....+.+-|.-+-+-+.-. ++.|-|+|.+++.++++ -.-+ ..+...++-|...+++++| .+.|-+.++
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~vG-~~P~~~a~~p~g~~vyv~~-------~~~~~v~vi 187 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IPVG-NTPTGVAVDPDGNKVYVTN-------SDDNTVSVI 187 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-EecC-CCcceEEECCCCCeEEEEe-------cCCCeEEEE
Confidence 5566666666655555544 68999999999999999 3322 2357888999999999999 667777777
Q ss_pred h
Q psy13379 105 D 105 (828)
Q Consensus 105 ~ 105 (828)
|
T Consensus 188 ~ 188 (381)
T COG3391 188 D 188 (381)
T ss_pred e
Confidence 7
No 75
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=26.80 E-value=2.6e+02 Score=28.69 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=45.8
Q ss_pred cceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEe-eCCCCeEEEEcC
Q psy13379 29 PDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAY-LPSYDKVLLTDT 89 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~-~~~~~~~~~~~~ 89 (828)
+..+..-+.=|+......+|.|.|+|.+ |.++....+..+ ++..+.+ =|..++|++|-.
T Consensus 186 pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEEEB
T ss_pred CCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEEeC
Confidence 5677777878888888899999999999 999999998844 5577777 367788888743
No 76
>KOG0281|consensus
Probab=26.75 E-value=37 Score=38.96 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=24.4
Q ss_pred EEEEEeecCeEEEEeccccceeeeecccCC
Q psy13379 40 ILIVLSRNAECIVVDINSGCVLRKCAFAEE 69 (828)
Q Consensus 40 viL~~~~~g~v~V~D~nSgviL~~~~ls~~ 69 (828)
||+--+++.+|+|||+|+|.+|+++--+-|
T Consensus 249 viisGSSDsTvrvWDv~tge~l~tlihHce 278 (499)
T KOG0281|consen 249 VIVSGSSDSTVRVWDVNTGEPLNTLIHHCE 278 (499)
T ss_pred EEEecCCCceEEEEeccCCchhhHHhhhcc
Confidence 566677888999999999999998755543
No 77
>KOG0293|consensus
Probab=26.66 E-value=1e+02 Score=36.22 Aligned_cols=56 Identities=11% Similarity=0.098 Sum_probs=47.3
Q ss_pred eeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEE
Q psy13379 31 SVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLL 86 (828)
Q Consensus 31 ~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~ 86 (828)
-|.+-|-=+.+|.+.-+-.++.|||.+|.....|.=+...++..|++.|..-+++.
T Consensus 274 yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~ 329 (519)
T KOG0293|consen 274 YIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT 329 (519)
T ss_pred EEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEe
Confidence 35567888999998888899999999999999988886667799999998877544
No 78
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=26.44 E-value=1.1e+02 Score=35.69 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=34.0
Q ss_pred Cceee--cceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCceeE-EeeCCCCeEEEE
Q psy13379 24 PIVRD--PDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKG-AYLPSYDKVLLT 87 (828)
Q Consensus 24 ~~~~~--~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~-~~~~~~~~~~~~ 87 (828)
.+..+ +..|++ +.+|.+++++.|.+||.++|.++++...++ ++. .+-++.+.|.++
T Consensus 104 ~i~~~~~~~~If~----G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~----vk~V~Ws~~g~~val~ 162 (443)
T PF04053_consen 104 SIKLPFSVEKIFG----GNLLGVKSSDFICFYDWETGKLIRRIDVSA----VKYVIWSDDGELVALV 162 (443)
T ss_dssp ----SS-EEEEE-----SSSEEEEETTEEEEE-TTT--EEEEESS-E-----EEEEE-TTSSEEEEE
T ss_pred EEcCCcccceEEc----CcEEEEECCCCEEEEEhhHcceeeEEecCC----CcEEEEECCCCEEEEE
Confidence 44444 577888 889999999999999999999999988764 333 344444555554
No 79
>KOG0772|consensus
Probab=26.17 E-value=66 Score=38.61 Aligned_cols=77 Identities=19% Similarity=0.158 Sum_probs=53.0
Q ss_pred eecceeeeecCCcEEEEEeecCeEEEEecc-ccceeeee--cccCCCCceeEEeeCCCCeEEEEcCceeeeeeccCc-ee
Q psy13379 27 RDPDSVIYHPNLNILIVLSRNAECIVVDIN-SGCVLRKC--AFAEEGQPIKGAYLPSYDKVLLTDTKSVGVRSDYNG-VL 102 (828)
Q Consensus 27 ~~~~~i~Yhp~LNviL~~~~~g~v~V~D~n-SgviL~~~--~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~ 102 (828)
+++.+|.+-+-=|+||-++-++++||||.- +-.+|..- -+++-.+ -.|. ++..+||+||-+.. .+++--| .+
T Consensus 365 ~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~-tdc~-FSPd~kli~TGtS~--~~~~~~g~L~ 440 (641)
T KOG0772|consen 365 QDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPG-TDCC-FSPDDKLILTGTSA--PNGMTAGTLF 440 (641)
T ss_pred CceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCC-Cccc-cCCCceEEEecccc--cCCCCCceEE
Confidence 479999999999999999999999999985 65665541 1111110 1122 33458899987765 4677777 55
Q ss_pred eehhh
Q psy13379 103 LLDTM 107 (828)
Q Consensus 103 ll~~~ 107 (828)
++|+|
T Consensus 441 f~d~~ 445 (641)
T KOG0772|consen 441 FFDRM 445 (641)
T ss_pred EEecc
Confidence 66665
No 80
>KOG0303|consensus
Probab=25.79 E-value=1.5e+02 Score=34.69 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=48.4
Q ss_pred cceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCc-eeEEeeCCCCeEEEEcCceeeee
Q psy13379 29 PDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQP-IKGAYLPSYDKVLLTDTKSVGVR 95 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~-~~~~~~~~~~~~~~~~~~~~~~r 95 (828)
+-|+.+--+-+.+.-.|.+-.|+|||.-.|.+++.- -.++|.. .+..+|-+.+ ++-|-..-.+-|
T Consensus 176 i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~g~-i~tTGfsr~seR 241 (472)
T KOG0303|consen 176 VYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLASGK-IFTTGFSRMSER 241 (472)
T ss_pred EEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCCcceeEEeccCc-eeeecccccccc
Confidence 445566667777888888899999999999999998 6666655 8888888776 555544444444
No 81
>KOG0640|consensus
Probab=24.97 E-value=1e+02 Score=35.17 Aligned_cols=62 Identities=19% Similarity=0.203 Sum_probs=52.9
Q ss_pred cceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEEEcCc
Q psy13379 29 PDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLLTDTK 90 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~~~~~ 90 (828)
+..+=|-++-+.-.-.+.+|-||+||.-|+.-..+-.-.+.|..|-.+-+..++|.+|+-|+
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~ 325 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK 325 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC
Confidence 67788999999999999999999999999987777777777777888888888888877654
No 82
>KOG0276|consensus
Probab=24.89 E-value=1.2e+02 Score=37.46 Aligned_cols=74 Identities=23% Similarity=0.254 Sum_probs=52.2
Q ss_pred ecceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCc-eeEEeeCCCCeEEEE-cCcee---------eeee
Q psy13379 28 DPDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQP-IKGAYLPSYDKVLLT-DTKSV---------GVRS 96 (828)
Q Consensus 28 ~~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~-~~~~~~~~~~~~~~~-~~~~~---------~~r~ 96 (828)
.+..+++||.|-+|+--+.+|+|++|..++=...++.-|+-+ + --+++.++.++|++- |..+| .++-
T Consensus 229 Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle--RvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsM 306 (794)
T KOG0276|consen 229 NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE--RVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSM 306 (794)
T ss_pred cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc--eEEEEeecCCCCeEEEeccCCcEEEEccCCCCceee
Confidence 356789999999999999999999999888777777666643 3 445666777776552 32222 3566
Q ss_pred ccCceee
Q psy13379 97 DYNGVLL 103 (828)
Q Consensus 97 ~~~~~~l 103 (828)
|-+|-++
T Consensus 307 d~~gKIi 313 (794)
T KOG0276|consen 307 DSNGKII 313 (794)
T ss_pred cCCccEE
Confidence 6777443
No 83
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=24.78 E-value=2.7e+02 Score=29.81 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=40.8
Q ss_pred cceeeeecCCcEEEEEee-cCeEEEEecc--ccc--eeeeecccCC-----CCceeEEeeCCCCeEEEEc
Q psy13379 29 PDSVIYHPNLNILIVLSR-NAECIVVDIN--SGC--VLRKCAFAEE-----GQPIKGAYLPSYDKVLLTD 88 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~~-~g~v~V~D~n--Sgv--iL~~~~ls~~-----~~~~~~~~~~~~~~~~~~~ 88 (828)
++.+.+||.-..+.+.+. +++|.|||.+ +|. +.++...-+. .....+.+-|....+++++
T Consensus 177 p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 177 PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec
Confidence 578999999888888876 8999999998 453 3555332221 1124566778777777764
No 84
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=24.24 E-value=2.5e+02 Score=30.05 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=40.3
Q ss_pred ecceeeeecCCcEEEEEeec-CeEEEEeccc-cceeee----ecccCCCCc-eeEEeeCCCCeEEEEcC
Q psy13379 28 DPDSVIYHPNLNILIVLSRN-AECIVVDINS-GCVLRK----CAFAEEGQP-IKGAYLPSYDKVLLTDT 89 (828)
Q Consensus 28 ~~~~i~Yhp~LNviL~~~~~-g~v~V~D~nS-gviL~~----~~ls~~~~~-~~~~~~~~~~~~~~~~~ 89 (828)
.+..+..+|.-+.+++.... +.|.|||.++ |.+... .... .+.+ -.+++.|....+++++.
T Consensus 127 ~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 127 GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEec
Confidence 35667788988888777654 8999999986 544321 1221 2323 45677788778888764
No 85
>KOG0303|consensus
Probab=23.60 E-value=1e+02 Score=36.12 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=30.2
Q ss_pred cceeeeecC-CcEEEEEeecCeEEEEeccccceeee
Q psy13379 29 PDSVIYHPN-LNILIVLSRNAECIVVDINSGCVLRK 63 (828)
Q Consensus 29 ~~~i~Yhp~-LNviL~~~~~g~v~V~D~nSgviL~~ 63 (828)
+--|.|||. .||||-...+..|++||+-+|..|=+
T Consensus 134 Vg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~ 169 (472)
T KOG0303|consen 134 VGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALIT 169 (472)
T ss_pred EEEEeecccchhhHhhccCCceEEEEeccCCceeee
Confidence 345789995 79999999999999999999987766
No 86
>KOG0295|consensus
Probab=23.35 E-value=2e+02 Score=33.41 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=41.0
Q ss_pred EEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEE--EcCceeeee
Q psy13379 40 ILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLL--TDTKSVGVR 95 (828)
Q Consensus 40 viL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~--~~~~~~~~r 95 (828)
++...+.++++|+||+++|-.|=+ |.+-++.|++.-+.+.||-|+ +|.|+|-+=
T Consensus 306 ~l~s~SrDktIk~wdv~tg~cL~t--L~ghdnwVr~~af~p~Gkyi~ScaDDktlrvw 361 (406)
T KOG0295|consen 306 VLGSGSRDKTIKIWDVSTGMCLFT--LVGHDNWVRGVAFSPGGKYILSCADDKTLRVW 361 (406)
T ss_pred EEEeecccceEEEEeccCCeEEEE--EecccceeeeeEEcCCCeEEEEEecCCcEEEE
Confidence 788899999999999999977665 333343588888888888775 577776653
No 87
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=22.86 E-value=5.4e+02 Score=26.29 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=26.6
Q ss_pred cceeeeecCCcEEEEEe--ecCeEEEEeccccceeee
Q psy13379 29 PDSVIYHPNLNILIVLS--RNAECIVVDINSGCVLRK 63 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~--~~g~v~V~D~nSgviL~~ 63 (828)
+..+.+.|+-+-+++.+ ..+.|.+||++ +..+.+
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~ 97 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFS 97 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEe
Confidence 67889999999988876 34699999998 544444
No 88
>KOG0647|consensus
Probab=22.66 E-value=1.5e+02 Score=33.73 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=55.8
Q ss_pred eecceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEE------EcCceeeeeeccCc
Q psy13379 27 RDPDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLL------TDTKSVGVRSDYNG 100 (828)
Q Consensus 27 ~~~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~------~~~~~~~~r~~~~~ 100 (828)
--+-+|.+||.-++|.-+.++|..-.||.++-.=|++|.- .+|+|.+--+-.++.++. |--.-.+-+.+|.-
T Consensus 252 YaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~--~~qpItcc~fn~~G~ifaYA~gYDWSkGhe~~n~~~~~ 329 (347)
T KOG0647|consen 252 YAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET--HPQPITCCSFNRNGSIFAYALGYDWSKGHEGNNPQYKP 329 (347)
T ss_pred EEecceEeecccceEEEecCCceEEEecchhhhhhhccCc--CCCccceeEecCCCCEEEEEeecccccccccCCCCCCC
Confidence 3378999999999999999999999999998877777432 234455444444444443 23333455566666
Q ss_pred eeeehhhhhhcc
Q psy13379 101 VLLLDTMLQTCL 112 (828)
Q Consensus 101 ~~ll~~~l~~~~ 112 (828)
.+.|+-.-+.-+
T Consensus 330 ~I~l~~~~~~ev 341 (347)
T KOG0647|consen 330 QIFLHPVSTEEV 341 (347)
T ss_pred eEEEeecccccc
Confidence 666665444433
No 89
>KOG0642|consensus
Probab=21.33 E-value=1.2e+02 Score=36.57 Aligned_cols=69 Identities=13% Similarity=0.205 Sum_probs=53.7
Q ss_pred cceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeEEEEcCceeeeeeccCceeeehhh
Q psy13379 29 PDSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKVLLTDTKSVGVRSDYNGVLLLDTM 107 (828)
Q Consensus 29 ~~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ll~~~ 107 (828)
+-.|+-||++-+.+-.-.+++|++||..+|.|+++-.-+.++ ..-+++.+....=+++.++|.+.|+..
T Consensus 492 in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~s----------vtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 492 INKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDS----------VTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred cceEEecCCCCeeEecccCCceecccccccccchheeeccce----------ecceeecCCCceEEeecCCceeehhhc
Confidence 567899999999999999999999999999999987666543 223444455555577888888888765
No 90
>KOG0286|consensus
Probab=21.30 E-value=2.6e+02 Score=31.82 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=46.2
Q ss_pred ceeeeecCCcEEEEEeecCeEEEEeccccceeeeecccCCCCceeEEeeCCCCeE----------EEEcCceeeeeeccC
Q psy13379 30 DSVIYHPNLNILIVLSRNAECIVVDINSGCVLRKCAFAEEGQPIKGAYLPSYDKV----------LLTDTKSVGVRSDYN 99 (828)
Q Consensus 30 ~~i~Yhp~LNviL~~~~~g~v~V~D~nSgviL~~~~ls~~~~~~~~~~~~~~~~~----------~~~~~~~~~~r~~~~ 99 (828)
...-|.+ -|.||--+.+.++..||+.+|.-++... .+.|..+.....|+..+. .|||.++=..++.+-
T Consensus 149 ScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ 226 (343)
T KOG0286|consen 149 SCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE 226 (343)
T ss_pred EEEEEcC-CCceEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec
Confidence 3344555 8889888888899999999998888765 444545666777755444 456665555554443
Done!