RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13379
(828 letters)
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A
{Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A
3sip_E
Length = 116
Score = 107 bits (269), Expect = 7e-28
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 347 RFLSSAQWYRDDDRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWA 406
R + W D W Q+AQ G Y +G D+ CF C V + WE D+P
Sbjct: 18 RLKTFTDWPLD-----WLDKRQLAQTGMYFTHAG---DKVKCFFCGVEIGSWEQEDQPVP 69
Query: 407 EHERHSPCCPFVKGEYTQNVPLSVTYATAPA 437
EH+R SP CP ++ T NVP++
Sbjct: 70 EHQRWSPNCPLLRRRTTNNVPINAEALDRIL 100
Score = 58.0 bits (140), Expect = 2e-10
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 241 MFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
+ E R +TF WP W Q+AQ G Y +G D+ CF
Sbjct: 12 LNREETRLKTFTDWPL---DWLDKRQLAQTGMYFTHAG---DKVKCF 52
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila
melanogaster}
Length = 136
Score = 102 bits (255), Expect = 8e-26
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 347 RFLSSAQWYRDDDRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWA 406
R + W D W Q+AQ G Y +G D+ CF C V + WE D+P
Sbjct: 40 RLKTFTDWPLD-----WLDKRQLAQTGMYFTHAG---DKVKCFFCGVEIGSWEQEDQPVP 91
Query: 407 EHERHSPCCPFVKGEYTQNVPLSVTYATAPA 437
EH+R SP CP ++ T NVP++
Sbjct: 92 EHQRWSPNCPLLRRRTTNNVPINAEALDRIL 122
Score = 57.4 bits (138), Expect = 4e-10
Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 20/76 (26%)
Query: 226 TPFPIDSQPSDHRNL--------------MFSEAARRETFAKWPHMDYKWALPDQMAQAG 271
P D ++ + E R +TF WP W Q+AQ G
Sbjct: 5 VPIAFDQVDNNTNATQLFKNNINKTRMNDLNREETRLKTFTDWPL---DWLDKRQLAQTG 61
Query: 272 FYHQPSGTGYDRAMCF 287
Y +G D+ CF
Sbjct: 62 MYFTHAG---DKVKCF 74
>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle,
long helix, protein complex, alternative splicing,
apoptosis, cell cycle, cell division; HET: MES; 1.40A
{Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A
4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A*
3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A*
3uik_A 3uij_A 1m4m_A 2rax_A ...
Length = 142
Score = 96.0 bits (238), Expect = 2e-23
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 359 DRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P++MA+AGF H P+ D A CF C L WEP D+P EH++HS C F+
Sbjct: 28 LEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFL 87
Query: 419 K 419
Sbjct: 88 S 88
Score = 73.6 bits (180), Expect = 1e-15
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 241 MFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
F + R TF WP ++ P++MA+AGF H P+ D A CF
Sbjct: 12 PFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCF 58
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling
protein/apoptosis complex; 1.80A {Homo sapiens} PDB:
2pop_B
Length = 94
Score = 89.6 bits (222), Expect = 8e-22
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 347 RFLSSAQWYRDDDRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWA 406
R + A + +A+AGF + G D CF+C + W+ D
Sbjct: 24 RLKTFANFPSGS----PVSASTLARAGFLYTGEG---DTVRCFSCHAAVDRWQYGDSAVG 76
Query: 407 EHERHSPCCPFVKGEYTQ 424
H + SP C F+ G Y +
Sbjct: 77 RHRKVSPNCRFINGFYLE 94
Score = 56.4 bits (136), Expect = 4e-10
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 241 MFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
E R +TFA +P +A+AGF + G D CF
Sbjct: 18 FVEEFNRLKTFANFPS--GSPVSASTLARAGFLYTGEG---DTVRCF 59
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle,
zinc-binding domain, apoptosis/apoptosis inhibitor
complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB:
3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A*
3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Length = 121
Score = 90.0 bits (223), Expect = 1e-21
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV---KG-E 421
+Q+A+AGFY G D+ CF C L W+P+++PW +H + P C ++ KG E
Sbjct: 44 KEQLARAGFYALGEG---DKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQE 100
Query: 422 YTQNVPLSVTYATAPA 437
Y N+ L+ +
Sbjct: 101 YINNIHLTHSLEECLV 116
Score = 59.2 bits (143), Expect = 8e-11
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 14/74 (18%)
Query: 214 SAINERLNCLHPTPFPIDSQPSDHRNLMFSEAARRETFAKWPHMDYKWALPDQMAQAGFY 273
A++ N + T P + M AR TF W + +Q+A+AGFY
Sbjct: 5 DAVSSDRNFPNSTNLPRNPS-------MADYEARIFTFGTWIYSVN----KEQLARAGFY 53
Query: 274 HQPSGTGYDRAMCF 287
G D+ CF
Sbjct: 54 ALGEG---DKVKCF 64
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger,
apoptosis, cytoplasm, metal-binding, polymorphism, zinc,
zinc-finger, alternative splicing, hydrolase, protease;
1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A*
2uvl_A
Length = 97
Score = 89.2 bits (221), Expect = 1e-21
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 360 RAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV- 418
++ P+Q+A AGFY+ D CF C L CWE D+PW EH + P C F+
Sbjct: 26 SSVPVQPEQLASAGFYYVGRN---DDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLI 82
Query: 419 --KG-EYTQNV 426
KG E+ +
Sbjct: 83 RMKGQEFVDEI 93
Score = 59.1 bits (143), Expect = 4e-11
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 241 MFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
M + AAR TF WP P+Q+A AGFY+ D CF
Sbjct: 11 MQTHAARMRTFMYWPS--SVPVQPEQLASAGFYYVGRN---DDVKCF 52
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small
molecule drug discovery, structur drug design, ligase,
metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB:
1nw9_A 2vsl_A
Length = 95
Score = 89.1 bits (221), Expect = 1e-21
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV---KG-E 421
+Q+A+AGFY G D+ CF C L W+P+++PW +H + P C ++ KG E
Sbjct: 30 KEQLARAGFYALGEG---DKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQE 86
Query: 422 YTQNVPLS 429
Y N+ L+
Sbjct: 87 YINNIHLT 94
Score = 56.4 bits (136), Expect = 3e-10
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 241 MFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
M AR TF W + +Q+A+AGFY G D+ CF
Sbjct: 11 MADYEARIFTFGTWIYSVN----KEQLARAGFYALGEG---DKVKCF 50
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor;
apoptosis, signaling protein, zinc binding; 2.50A {Homo
sapiens}
Length = 111
Score = 88.9 bits (220), Expect = 2e-21
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 347 RFLSSAQWYRDDDRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWA 406
R + A + +A+AGF + G D CF+C + W+ D
Sbjct: 41 RLKTFANFPSGS----PVSASTLARAGFLYTGEG---DTVRCFSCHAAVDRWQYGDSAVG 93
Query: 407 EHERHSPCCPFVKGEYTQ 424
H + SP C F+ G Y +
Sbjct: 94 RHRKVSPNCRFINGFYLE 111
Score = 58.8 bits (142), Expect = 9e-11
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 12/78 (15%)
Query: 217 NERLNCLHPTPFPIDSQ-------PSDHRNLMFSEAARRETFAKWPHMDYKWALPDQMAQ 269
+ + P S + E R +TFA +P +A+
Sbjct: 4 SHHHHHHSSGLVPRGSHMKTCVPADINKEEEFVEEFNRLKTFANFPS--GSPVSASTLAR 61
Query: 270 AGFYHQPSGTGYDRAMCF 287
AGF + G D CF
Sbjct: 62 AGFLYTGEG---DTVRCF 76
>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif,
apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} PDB:
3oz1_A*
Length = 122
Score = 88.9 bits (220), Expect = 3e-21
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 360 RAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV- 418
++ P+Q+A AGFY+ D CF C L CWE D+PW EH + P C F+
Sbjct: 32 SSVPVQPEQLASAGFYYVGRN---DDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLI 88
Query: 419 --KG-EYTQNV 426
KG E+ +
Sbjct: 89 RMKGQEFVDEI 99
Score = 59.2 bits (143), Expect = 7e-11
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 241 MFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
M + AAR TF WP P+Q+A AGFY+ D CF
Sbjct: 17 MQTHAARMRTFMYWPS--SVPVQPEQLASAGFYYVGRN---DDVKCF 58
>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo
sapiens}
Length = 106
Score = 88.0 bits (218), Expect = 4e-21
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 347 RFLSSAQWYRDDDRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWA 406
R S W P +++AGF D CF+C CL WE D+PW
Sbjct: 24 RLASFRNWPFYVQ---GISPCVLSEAGFVFTGKQ---DTVQCFSCGGCLGNWEEGDDPWK 77
Query: 407 EHERHSPCCPFVKGEYTQN 425
EH + P C F++ + +
Sbjct: 78 EHAKWFPKCEFLRSKKSSE 96
Score = 61.4 bits (149), Expect = 8e-12
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 230 IDSQPSDHRNLMFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
+ S+ + E AR +F WP + P +++AGF D CF
Sbjct: 7 LKSRLRGGKMRYQEEEARLASFRNWPF-YVQGISPCVLSEAGFVFTGKQ---DTVQCF 60
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis,
cytoplasm, polymorphism, zinc, zinc-FIN metal binding
protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Length = 85
Score = 87.2 bits (216), Expect = 4e-21
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 347 RFLSSAQWYRDDDRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWA 406
R + + + + +A+AGFY+ D+ CF C + L W+ D P
Sbjct: 15 RMSTYSTF----PAGVPVSERSLARAGFYYTGVN---DKVKCFCCGLMLDNWKLGDSPIQ 67
Query: 407 EHERHSPCCPFVKG 420
+H++ P C F++
Sbjct: 68 KHKQLYPSCSFIQN 81
Score = 59.1 bits (143), Expect = 3e-11
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 234 PSDHRNLMFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
P + E R T++ +P +A+AGFY+ D+ CF
Sbjct: 2 PLGSKYDFSCELYRMSTYSTFPA--GVPVSERSLARAGFYYTGVN---DKVKCF 50
>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide
complex, apoptosis inhibition, peptidomimetic, small
molecule, drug design, inhibitor/apoptosis complex; HET:
BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A*
3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A*
1oxn_A* 1oxq_A* 1oy7_A*
Length = 133
Score = 89.0 bits (220), Expect = 4e-21
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 360 RAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV- 418
P+ +A AGF+H D+ CF C L W+ D+PW EH + P C F+
Sbjct: 60 LTAEVPPELLAAAGFFHTGHQ---DKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLL 116
Query: 419 --KG-EYTQNVPLSVT 431
KG EY N+ L+ +
Sbjct: 117 RSKGQEYINNIHLTHS 132
Score = 54.3 bits (130), Expect = 6e-09
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 241 MFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
M SE R +F WP P+ +A AGF+H D+ CF
Sbjct: 45 MGSEELRLASFYDWPL--TAEVPPELLAAAGFFHTGHQ---DKVRCF 86
>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4;
protease-inhibitor, apoptosis-hydrolase complex; 2.40A
{Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A
Length = 141
Score = 87.9 bits (217), Expect = 1e-20
Identities = 29/88 (32%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 347 RFLSSAQWYRDDDRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWA 406
R S W P ++A AG Y+ G D+ CF C L WEP D W+
Sbjct: 47 RLKSFQNW----PDYAHLTPRELASAGLYYTGIG---DQVQCFCCGGKLKNWEPCDRAWS 99
Query: 407 EHERHSPCCPFVKGEYTQNVPLSVTYAT 434
EH RH P C FV G S ++
Sbjct: 100 EHRRHFPNCFFVLGRNLNIRSESDAVSS 127
Score = 59.4 bits (143), Expect = 1e-10
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 206 HVPALAIASAINERLNCLHPTPFPIDSQPSDH--RNLMFSEAARRETFAKWPHMDYKWAL 263
A+ + L T +D + + M+SE AR ++F WP Y
Sbjct: 4 SRDHFALDRPSETHADYLLRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWPD--YAHLT 61
Query: 264 PDQMAQAGFYHQPSGTGYDRAMCF 287
P ++A AG Y+ G D+ CF
Sbjct: 62 PRELASAGLYYTGIG---DQVQCF 82
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A
{Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A
1jd6_A 1q4q_A
Length = 124
Score = 86.9 bits (215), Expect = 2e-20
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 347 RFLSSAQWYRDDDRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWA 406
R + W R + P Q+A+AGF++ G DR CF+C L+ W DEPW
Sbjct: 29 RLRTFEAW----PRNLKQKPHQLAEAGFFYTGVG---DRVRCFSCGGGLMDWNDNDEPWE 81
Query: 407 EHERHSPCCPFV---KG-EYTQNVPLSVTYATAP 436
+H C FV KG Y V A
Sbjct: 82 QHALWLSQCRFVKLMKGQLYIDTVAAKPVLAEEK 115
Score = 57.3 bits (138), Expect = 5e-10
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 241 MFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
E AR TF WP P Q+A+AGF++ G DR CF
Sbjct: 23 YAIETARLRTFEAWPR--NLKQKPHQLAEAGFFYTGVG---DRVRCF 64
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 81.9 bits (200), Expect = 9e-17
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 360 RAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFVK 419
++ P+Q+A AGFY+ D CF+C L CWE D+PW EH + P C F+
Sbjct: 18 SSVPVQPEQLASAGFYYVGRN---DDVKCFSCDGGLRCWESGDDPWVEHAKWFPRCEFLI 74
Score = 64.2 bits (154), Expect = 5e-11
Identities = 30/192 (15%), Positives = 50/192 (26%), Gaps = 20/192 (10%)
Query: 241 MFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCFT-----ILWALPD 295
M + AAR TF WP P+Q+A AGFY+ D CF+ W D
Sbjct: 3 MQTHAARMRTFMYWPS--SVPVQPEQLASAGFYYVGRN---DDVKCFSCDGGLRCWESGD 57
Query: 296 Q--------MAQAGFYHQLSGTGDDRAMCFTIMGITRSDLAQAVSIISQVIGITDSGTGR 347
+ F ++ G + + L+ I +
Sbjct: 58 DPWVEHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLSTPPIIHYGPGESSSEDAVM 117
Query: 348 FLSSAQWYRDDDRAIWALPDQM--AQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPW 405
+ + L Q ++ + T +D E ++
Sbjct: 118 MNTPVVKSALEMGFNRDLVKQTVQSKILTTGENYKTVNDIVSALLNAEDEKREEEKEKQA 177
Query: 406 AEHERHSPCCPF 417
E
Sbjct: 178 EEMASDDLSLIR 189
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.5 bits (159), Expect = 6e-11
Identities = 86/470 (18%), Positives = 138/470 (29%), Gaps = 174/470 (37%)
Query: 399 EPTDEPWAEHERHSP---CCPFV-----------KGEYTQNVPLSVTYATAPALAMT--H 442
EPT+ A+ E +P F+ G++ Q + L +T L H
Sbjct: 43 EPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102
Query: 443 ALNPDSTLVDITTLPGYIPLISRDSTVLVLNYIRQLKTLPRCL------AISRSYHE--- 493
AL L + L+ NYI R A+ R+ E
Sbjct: 103 AL--------AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 494 -----------TVPCW------YSTMY-----DLVWRIARLPSPWSRVQFPPEGGFYPEQ 531
T + Y T Y DL+ A S R E + +
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQT-YHVLVGDLIKFSAETLSELIRTTLDAE-KVFTQG 212
Query: 532 IMLDLGTADILLSCPPHAAWL-YPAHITRQYRAGTQLYTTTQDITTLSGYILLISRDSTV 590
+ +IL WL P+ T D L IS
Sbjct: 213 L-------NIL-------EWLENPS--------------NTPDKDYLLSI--PIS----- 237
Query: 591 LVLNYVRQLKVENEFSVSKLCYDYGLSHSELK-------------VSAAAIAA------- 630
L V QL + V+ G + EL+ V+A AIA
Sbjct: 238 CPLIGVIQLA---HYVVT--AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 631 --NVK-----------HSSKA--SESLDEEHV--NREETENVPRPCLIVGARMKTTGEDL 673
+V+ +A + SL + + E E VP P L + +
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI------SNLTQ 346
Query: 674 YQLKQRLESGGNPLAMDTE----LTSSP-------PPPSPHLCLLVLDFHYRPNKSPATA 722
Q++ + + L + L + PP S L L L K+ A +
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS--LYGLNLTLR----KAKAPS 400
Query: 723 GT-QTSAPGNKKAVSGTGTSTATVGGGKLIQVVKLSASPVKS--LTPATP 769
G Q+ P +++ + + + + +++ P S L PA+
Sbjct: 401 GLDQSRIPFSERKLKFS------------NRFLPVAS-PFHSHLLVPASD 437
Score = 57.4 bits (138), Expect = 2e-08
Identities = 114/673 (16%), Positives = 195/673 (28%), Gaps = 238/673 (35%)
Query: 182 LELKHASFKTACYSLVCELKRQNRHVPA--LAIASAINERLNCLHPTP---FPIDSQPSD 236
L L H S + + L VP IAS + E+ N + P P F D +P+
Sbjct: 9 LTLSHGSLE---HVL---------LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT- 55
Query: 237 HRNLMFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCFTILWALPDQ 296
+ A E K+ + Y + + +PS G + L
Sbjct: 56 ------TPA---ELVGKF--LGY---VSSLV-------EPSKVGQFDQVLNLCLTEF--- 91
Query: 297 MAQAGFYHQLSGTGDDRAMCFTIMGITRSDLAQAVSIIS---QVIGITDSGTGRFLSSAQ 353
+ + L G D A+ ++ + L + +I + + +SA
Sbjct: 92 --ENCY---LEGN-DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 354 WYRDDDRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAE----HE 409
+ RA+ A G G+ TD+ + E ++
Sbjct: 146 F-----RAV-----GEGNAQLVAIFGGQGN-----------------TDDYFEELRDLYQ 178
Query: 410 RHSPCC-PFVKGEYTQNVPLSVTYATAPALAMTHALNPDSTLVDITTLPG--Y------- 459
+ +K L T A + T LN L + + P Y
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKV-FTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 460 IPLISRDSTVLV--LNYIRQLKTL---PRCL------------------AISRSYHETVP 496
PLI ++ +Y+ K L P L AI+ +
Sbjct: 238 CPLI-----GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET-----D 287
Query: 497 CWYSTMYDLVWRIARLPSPW--SRVQ--FPPEGGFYPEQIMLDL-----GTADILLSC-- 545
W S + V + + + R +P P I+ D G +LS
Sbjct: 288 SWES-FFVSVRKAITV-LFFIGVRCYEAYPNTS--LPPSILEDSLENNEGVPSPMLSISN 343
Query: 546 PPHAAWLYPAHI--TRQYRAGTQLYTTTQDITTLSGYILLI-SRDSTVL--------VLN 594
++ T + + + I L+ + V+ LN
Sbjct: 344 LTQEQVQ--DYVNKTNSHLP------AGKQV-----EISLVNGAKNLVVSGPPQSLYGLN 390
Query: 595 -YVRQLKVEN-------EFSVSKLCYDYGLSHSELKVSAAAIAANVKHSS---KASESLD 643
+R+ K + FS KL + S+ L V++ HS AS+ ++
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKF----SNRFLPVASPF------HSHLLVPASDLIN 440
Query: 644 EEHVNREETENVPRPCLIVGARMK------TTGEDLYQLKQRLESGGNPLAMDTELTSSP 697
++ V ++ G DL R+ SG + + P
Sbjct: 441 KDLVKNN--------VSFNAKDIQIPVYDTFDGSDL-----RVLSGSISERIVDCIIRLP 487
Query: 698 -------PPPSPHLCLLVLDFHYRPNKSPATAGTQTSAPGNKKAVSGTGTSTATVGGGKL 750
+ H +LDF G PG SG G T G
Sbjct: 488 VKWETTTQFKATH----ILDF-----------G-----PG---GASGLGVLTHRNKDGTG 524
Query: 751 IQVV---KLSASP 760
++V+ L +P
Sbjct: 525 VRVIVAGTLDINP 537
Score = 41.6 bits (97), Expect = 0.001
Identities = 62/383 (16%), Positives = 106/383 (27%), Gaps = 161/383 (42%)
Query: 121 LEMLVSEAI-LLQQTLKTIETTGCEFSPGL----WTEVLTELETKIEAAQSEPKK----- 170
+ L+ + L + ++T F+ GL W +E + P K
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW----------LENPSNTPDKDYLLS 233
Query: 171 SAKSQKWNIICLELKHASFKTACYSLVC--------ELKRQNR----H----VPALAIAS 214
S +I + + A Y + EL+ + H V A+AIA
Sbjct: 234 IPIS--CPLIGV------IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 215 AINERLNCLHPTPFPIDSQPSDHRN------LMFSEAAR-RETFAKWPHMDYKWALPDQM 267
DS S + ++F R E + P+ +LP +
Sbjct: 286 T---------------DSWESFFVSVRKAITVLFFIGVRCYEAY---PNT----SLPPSI 323
Query: 268 AQAGFYH---QPSG----TGYDRAMCFTILW--------------AL---PDQMAQAGFY 303
+ + PS + + + +L + +G
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Query: 304 HQLSG-----------TGDD--------RAMCFTIMGITR---------SD-LAQAVSII 334
L G +G D R + F+ R S L A +I
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS----NRFLPVASPFHSHLLVPASDLI 439
Query: 335 SQVIGITDSGTGRFLSSAQWYRDDDRAIWALPDQMAQAGFYHQPSGTGDD-RAMCFT--- 390
++ D + D +P Y + G D R + +
Sbjct: 440 NK-----DLVKNNV----SFNAKD----IQIP-------VYD--TFDGSDLRVLSGSISE 477
Query: 391 ----CIVCL-VCWEPTDEPWAEH 408
CI+ L V WE T + A H
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATH 500
Score = 31.9 bits (72), Expect = 1.2
Identities = 52/316 (16%), Positives = 95/316 (30%), Gaps = 111/316 (35%)
Query: 564 GTQLYTTTQ---------DITTLSGY---ILLISRDS----TVLVLNYVRQLKVENEFSV 607
G LY T++ D Y IL I ++ T+ + EN
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN---Y 1688
Query: 608 SKLCYDYGLSHSELKVSAAAIAANV-KHSSKASESLDEEHVNREETENVPRPCLIVGARM 666
S + ++ + + K+ I + +HS+ + ++ ++ T+ +P L
Sbjct: 1689 SAMIFETIV---DGKLKTEKIFKEINEHSTSYTFRSEKGLLSA--TQFT-QPALT----- 1737
Query: 667 KTTGEDLYQLKQRLESGGNPLAMDTELTSSPPPPSP---H-------LCLL--VLDF--- 711
+ ++ L+S G P + H L L V+
Sbjct: 1738 -LMEKAAFED---LKSKGLI-----------PADATFAGHSLGEYAALASLADVMSIESL 1782
Query: 712 ----HYRPNKSPATAG--TQTSAPGNKKAVSGTG------TSTATVGGGKLIQVV--KLS 757
YR G Q + P ++ S G A + +Q V ++
Sbjct: 1783 VEVVFYR--------GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 758 ASPVKSLTPA---TPGEGIRKAILLPQDQSSTVLAGLTTSG----TLVL-------MDVL 803
+ + Q V AG T VL +D++
Sbjct: 1835 KRTGWLVEIVNYNVENQ-----------Q--YVAAG-DLRALDTVTNVLNFIKLQKIDII 1880
Query: 804 KLEVLSSLLPIEGQEF 819
+L+ SL +EG F
Sbjct: 1881 ELQKSLSLEEVEGHLF 1896
Score = 31.2 bits (70), Expect = 1.9
Identities = 33/191 (17%), Positives = 59/191 (30%), Gaps = 65/191 (34%)
Query: 15 EEEKEEEEG---PI--VRDPD-----SVIYHPNLN------ILIVLSRN-AECIVVDINS 57
E+ E EG P+ + + + N + + I L N A+ +VV S
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL-VNGAKNLVV---S 380
Query: 58 G---------CVLRK-CAFAEEGQ-----------------PIKGA-----YLPSYDKVL 85
G LRK A + Q P+ + L ++
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV-ASPFHSHLLVPASDLI 439
Query: 86 LTDTKSVGVRSDYNGVLL----LDTM----LQTCLKSKNNPVKLEMLVSEAILLQQTLKT 137
D V +N + DT L+ L + ++ ++ + + T +
Sbjct: 440 NKDLVKNNV--SFNAKDIQIPVYDTFDGSDLRV-LSGSISERIVDCIIRLPVKWETTTQF 496
Query: 138 IETTGCEFSPG 148
T +F PG
Sbjct: 497 KATHILDFGPG 507
Score = 29.2 bits (65), Expect = 7.3
Identities = 30/134 (22%), Positives = 41/134 (30%), Gaps = 40/134 (29%)
Query: 335 SQVIGITDSGTGRFLSSAQWYRDDD--RAIWALPDQ--MAQAGF------YHQP------ 378
SQ G+ G L Y+ + +W D GF + P
Sbjct: 1626 SQEQGM-----GMDL-----YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH 1675
Query: 379 -SGTGDDR------AMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFVKGEYTQNVPLSVT 431
G R AM F + T++ + E HS F ++ LS T
Sbjct: 1676 FGGEKGKRIRENYSAMIFE--TIVDGKLKTEKIFKEINEHSTSYTF----RSEKGLLSAT 1729
Query: 432 YATAPAL-AMTHAL 444
T PAL M A
Sbjct: 1730 QFTQPALTLMEKAA 1743
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.6 bits (151), Expect = 5e-10
Identities = 83/614 (13%), Positives = 169/614 (27%), Gaps = 167/614 (27%)
Query: 14 EEEEKE----EEEGPIVRDPDSVIYHPNLNILIVLSRNAECIV-------VDINSGCVLR 62
++ K EE I+ D+V L + L E +V + IN ++
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAV--SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 63 KCAFAEEGQP--IKGAYLPSYDKVLLTDTKSVGVRSDYNGVLLLDTM--LQTCLKS-KNN 117
E+ QP + Y+ D+ L D + + YN V L L+ L +
Sbjct: 97 PIK-TEQRQPSMMTRMYIEQRDR-LYNDNQVF---AKYN-VSRLQPYLKLRQALLELRPA 150
Query: 118 P-VKLE-M-------LVSEAILLQQTLKTIE------TTGCEFSPGLWTEVLTELETKIE 162
V ++ + + + L + ++ SP E+L +L +I+
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 163 AAQSEPKKSAKSQKWNIICLE------LKHASFKTACYSL-----VCELKRQNRHVPALA 211
+ + + K I ++ LK ++ L V + A
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN---CLLVLLNVQN----AKAWNAFN 263
Query: 212 IA---------SAINERLNCLHPTPFPIDSQPSDHRNLMFSEAARRETFAKWPHMDYKWA 262
++ + + L+ T +D H ++ + + K+ +
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLD-----HHSMTLTPDEVKSLLLKYLDCRPQ-D 317
Query: 263 LPDQMAQ---------AGFYHQPSGT--GYDRAMCFTILWALPDQMAQA--GFYHQLSGT 309
LP ++ A T + C D++ + L
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC--------DKLTTIIESSLNVLE-P 368
Query: 310 GDDRAMCFTIMGITRSDLAQAVSIISQVIGI-----TDSGTGRFLSSAQWY----RDDDR 360
+ R F + + I + ++ + S ++ Y +
Sbjct: 369 AEYRK-MFDRLSVFPPS----AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 361 AIWALPDQMAQAGFYHQPSGTGDDRAM------CFTCIVCLVCWEPTDEP----WAEH-E 409
+ ++P + ++ A+ + + + H
Sbjct: 424 STISIPSI--YLELKVKLE---NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 410 RHSPCCPFVKGEYTQNVPL-------------SVTYATAPALAMTHALNPDSTLVDITTL 456
H E+ + + L + + + A LN TL +
Sbjct: 479 HH-----LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN---TLQQLKFY 530
Query: 457 PGYIPLISRDSTVLVLNYIRQLKTLPRCLAISRSYHETVPCWYSTMYDLVWRIARLPSPW 516
YI LV L LP+ T DL+ RIA L
Sbjct: 531 KPYICDNDPKYERLVNAI---LDFLPKIEENLICSKYT---------DLL-RIA-L---- 572
Query: 517 SRVQFPPEGGFYPE 530
+ + E
Sbjct: 573 ----MAEDEAIFEE 582
Score = 45.2 bits (106), Expect = 1e-04
Identities = 45/276 (16%), Positives = 78/276 (28%), Gaps = 61/276 (22%)
Query: 452 DITTLPGYIPLISRDSTVL-VLNYIRQLKTLPRCLAISRSYHETVPCWYSTMYDLVWRIA 510
DI L + + V + + + + I S S L W +
Sbjct: 20 DI--LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV-----SGTLRLFWTLL 72
Query: 511 RLPSPWSRVQFPPEGGFYPEQIMLDLGTADILLSCPPHAAWLY---------PAHITRQY 561
VQ F E + ++ +L P+ +TR Y
Sbjct: 73 SKQE--EMVQK-----FVEEVLRINYK-------------FLMSPIKTEQRQPSMMTRMY 112
Query: 562 -RAGTQLYTTTQDITTLSGYILLISRDSTVLVL-NYVRQLKVENEFSVSKLCYDYGLSHS 619
+LY Q + +SR L L + +L+ + G+ S
Sbjct: 113 IEQRDRLYNDNQVFAKYN-----VSRLQPYLKLRQALLELRPAKNVLI------DGVLGS 161
Query: 620 ELKVSAAAIAANVKHSSKASE-----SLDEEHVNREETENVPRPCLIVGARMKTTGEDLY 674
A + + K K +L + E + + + + +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 675 QLKQRLESGGNPLAMDTELTSSPPPPSPHLCLLVLD 710
+K R+ S L L S P + CLLVL
Sbjct: 222 NIKLRIHSIQAEL---RRLLKSKPYEN---CLLVLL 251
Score = 37.1 bits (85), Expect = 0.029
Identities = 36/278 (12%), Positives = 77/278 (27%), Gaps = 97/278 (34%)
Query: 459 YIPLISRDSTVLVLNYIRQLKTLPRCLAISRSYHETVPCWYSTMYDLVWRIARLPSPWSR 518
++ L + +S VL L+ L I ++ + + A L R
Sbjct: 186 WLNLKNCNSPETVLE---MLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAEL----RR 236
Query: 519 VQFPPEGGFYPEQ--IMLDLGTADIL----LSCPPHAAWLYPAHITRQYRAGTQLYTTTQ 572
+ Y ++L++ A LSC
Sbjct: 237 LLKSKP---YENCLLVLLNVQNAKAWNAFNLSCK-------------------------- 267
Query: 573 DITTLSGYILLISRDSTV---LVLNYVRQLKVENE---FSVSK---LCYDY-GLSHSELK 622
ILL +R V L + +++ + + L Y +L
Sbjct: 268 --------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 623 VSA--------AAIAANVKHSSKASESLDEEHVNREETENVPRPCLIVGARMKTTGEDL- 673
+ IA +++ ++ +HVN ++ + L L
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNW--KHVNCDKLTTIIESSL----------NVLE 367
Query: 674 -YQLKQRLESGGNPLAM---DTELTSSPPPPSPHLCLL 707
+ ++ + L++ + P+ L L+
Sbjct: 368 PAEYRKMFDR----LSVFPPSAHI------PTILLSLI 395
Score = 33.7 bits (76), Expect = 0.29
Identities = 64/437 (14%), Positives = 115/437 (26%), Gaps = 142/437 (32%)
Query: 417 FVKGEYTQNVP-LSVTYAT---APALAMTHALNPDSTLVDITTLPGYIPL-ISRDSTVLV 471
FV+ N L T P++ + L + +SR L
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL--YNDNQVFAKYNVSRLQPYLK 139
Query: 472 L-NYIRQLKTLPR------------CLAIS--RSYHETVPCWYSTMYDLVWRIARLPSPW 516
L + +L+ +A+ SY
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY------------------------- 174
Query: 517 SRVQFPPEGGFYPEQIMLDLGTADILLSCPPHAAWLYPAHITRQYRAGT-QLYTTTQDIT 575
F+ L+L + + L I + + + I
Sbjct: 175 KVQCKMDFKIFW-----LNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNIKLRIH 228
Query: 576 TLSGYI--LLISRD--STVLVLNYVRQLKVENEFSVSKLC------YDYGLSHSELKVSA 625
++ + LL S+ + +LVL V+ K N F++S C V+
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--CKILLTTRFKQ-------VTD 279
Query: 626 AAIAANVKHSS--KASESLDEEHVNREETENVPRPCLIVGARMKTTGEDLYQLKQRLESG 683
AA H S S +L +E +++ L + +DL R
Sbjct: 280 FLSAATTTHISLDHHSMTLTP-----DEVKSLLLKYL----DCRP--QDL----PREVLT 324
Query: 684 GNPLAMDTELTSSPPPPSPHLCLLVLDFHYRPNKSPATAGTQTSAPGNKKAVSGTGTSTA 743
NP L ++ T +
Sbjct: 325 TNPRR---------------LSIIAESIRDGLA---------------------TWDNWK 348
Query: 744 TVGGGKLIQVVKLSASPVKSLTPATPGEGIRK-----AILLPQDQ--SSTVLAGL-TTSG 795
V KL +++ S + L PA RK ++ P + +L+ +
Sbjct: 349 HVNCDKLTTIIESS---LNVLEPAE----YRKMFDRLSV-FPPSAHIPTILLSLIWFDVI 400
Query: 796 TLVLMDVLKLEVLSSLL 812
+M V+ SL+
Sbjct: 401 KSDVMVVVNKLHKYSLV 417
Score = 29.8 bits (66), Expect = 4.4
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 773 IRKAILLPQDQSSTVLAGLTTSG-TLVLMDVLKLEVLSSLLPIEGQEF----VTLTYCN 826
+R+A+L + + ++ G+ SG T + L+V S +F + L CN
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKT-----WVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
>3hoa_A Thermostable carboxypeptidase 1; proline-rich loop, hydrolase;
2.10A {Thermus thermophilus HB27} PDB: 1wgz_A
Length = 509
Score = 34.4 bits (78), Expect = 0.17
Identities = 17/106 (16%), Positives = 28/106 (26%)
Query: 472 LNYIRQLKTLPRCLAISRSYHETVPCWYSTMYDLVWRIARLPSPWSRVQFPPEGGFYPEQ 531
++ PR A+S HE+ + + P +R F G E
Sbjct: 285 QGLPKEHWGTPRGDAVSLGVHESQSRTWENLVGRSLGFWERFFPRAREVFASLGDVSLED 344
Query: 532 IMLDLGTADILLSCPPHAAWLYPAHITRQYRAGTQLYTTTQDITTL 577
+ + L Y HI + L+ L
Sbjct: 345 FHFAVNAVEPSLIRVEADEVTYNLHILVRLELELALFRGELSPEDL 390
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.24
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 23/46 (50%)
Query: 677 KQRLESGGNPLAMDTELTSSPPPPSPHLCLLVLDFHYRPNKSPATA 722
KQ L+ +L +S L L Y + +PA A
Sbjct: 19 KQALK----------KLQAS----------LKL---YADDSAPALA 41
Score = 32.2 bits (72), Expect = 0.33
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 20/48 (41%)
Query: 169 KKSAKSQKWNIICLELKHASFKTACYSLVCELKRQNRHVPALAIASAI 216
K++ K K L+ AS K Y+ + PALAI + +
Sbjct: 19 KQALK--K-----LQ---ASLKL--YA--------DDSAPALAIKATM 46
Score = 31.8 bits (71), Expect = 0.40
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 11/34 (32%)
Query: 409 ERHSPCCPFVKGEYTQNVPLSVTYA--TAPALAM 440
E+ + +K + ++ L YA +APALA+
Sbjct: 18 EKQA-----LK-KLQASLKL---YADDSAPALAI 42
Score = 30.7 bits (68), Expect = 1.0
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 12/34 (35%)
Query: 602 ENEFSVSKLCYDYGLSHSELKV----SAAAIAAN 631
E + ++ KL + LK+ SA A+A
Sbjct: 18 EKQ-ALKKL-------QASLKLYADDSAPALAIK 43
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA
binding, cell cycle; NMR {Salmonella enterica} SCOP:
a.43.1.3
Length = 76
Score = 30.2 bits (67), Expect = 0.41
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 161 IEAAQSEPKKSAKSQKWNIICLELKHASFKTAC 193
+E + P S K ++ N+ E KH FK AC
Sbjct: 21 LERVVTAPVSSGKIKRVNVNFDEEKHTRFKAAC 53
>1x50_A Galectin-4; GAL-BIND lectin, sugar binding, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 164
Score = 28.8 bits (64), Expect = 4.7
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 9/50 (18%)
Query: 379 SGTGDDRAMCFT------CIVCLVCWEPTDEPWAEHERHSPCCPFVKGEY 422
G+ D A+ +V + W E+ PF G++
Sbjct: 62 VGSSGDIALHINPRMGNGTVVRNSLL---NGSWGSEEKKITHNPFGPGQF 108
>3iuk_A Uncharacterized protein; PF05960.1, DUF885, M32
carboxypeptidase-like fold, PSI, MCSG structural
genomics, protein structure initiative; 1.85A
{Arthrobacter aurescens}
Length = 562
Score = 29.6 bits (66), Expect = 5.8
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 490 SYHETVPCWYSTMYDLVWRIARLPSPWSRVQFPP----EG-GFYPEQIMLDLG 537
+HE VP + + +R L W R EG Y EQ+ML+LG
Sbjct: 386 VFHEGVPGHHLQVATATYRRELLN-NWRRNVCWVSGHGEGWALYAEQLMLELG 437
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 6.0
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 2 REKRGGVVRKGKEEEEKEEEE 22
RE++ +++ + E+E
Sbjct: 91 REEQRKRLQELDAASKVMEQE 111
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Methylococcus capsulatus} PDB:
3ljv_A 3p3q_A
Length = 288
Score = 28.9 bits (65), Expect = 6.9
Identities = 7/37 (18%), Positives = 9/37 (24%), Gaps = 1/37 (2%)
Query: 363 WALPDQMAQA-GFYHQPSGTGDDRAMCFTCIVCLVCW 398
W P A Q + R F + L
Sbjct: 192 WGFPQVFIDALQLSQQDEIRDEGRTGRFARQLALAQH 228
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid
motif, transferase; 2.30A {Escherichia coli}
Length = 190
Score = 28.5 bits (64), Expect = 7.4
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 14/44 (31%)
Query: 41 LIVLSRNAECIVVDINS----------GCVLRKCAFAEEGQPIK 74
L++ SRN E ++D G VL +G+ +
Sbjct: 34 LVITSRNTELKLIDEFGRTKESYKVPYGAVL----AKGDGEQVA 73
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW
fold for isoprenoid synthase, peptidoglycan synthesis,
transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Length = 249
Score = 28.2 bits (64), Expect = 9.0
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 610 LCYDYGLSHSELKVSAAAIAANVKHSSKASESLDEEHVNRE-ETENVPRPCLIVGARMKT 668
+YG E+ + IA K + + + E H N T N+P P L++ R T
Sbjct: 144 FALNYG-GRKEIISAVQLIAERYKSGEISLDEISETHFNEYLFTANMPDPELLI--R--T 198
Query: 669 TGE 671
+GE
Sbjct: 199 SGE 201
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.404
Gapped
Lambda K H
0.267 0.0335 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,401,021
Number of extensions: 748292
Number of successful extensions: 1523
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1488
Number of HSP's successfully gapped: 75
Length of query: 828
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 726
Effective length of database: 3,853,851
Effective search space: 2797895826
Effective search space used: 2797895826
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.4 bits)