RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13379
(828 letters)
>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 97
Score = 97.2 bits (242), Expect = 6e-25
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 347 RFLSSAQWYRDDDRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWA 406
R + W D W Q+AQ G Y +G D+ CF C V + WE D+P
Sbjct: 9 RLKTFTDWPLD-----WLDKRQLAQTGMYFTHAG---DKVKCFFCGVEIGSWEQEDQPVP 60
Query: 407 EHERHSPCCPFVKGEYTQNVPLS 429
EH+R SP CP ++ T NVP++
Sbjct: 61 EHQRWSPNCPLLRRRTTNNVPIN 83
Score = 56.8 bits (137), Expect = 1e-10
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 241 MFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
+ E R +TF WP W Q+AQ G Y +G D+ CF
Sbjct: 3 LNREETRLKTFTDWPL---DWLDKRQLAQTGMYFTHAG---DKVKCF 43
>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 93.0 bits (231), Expect = 2e-23
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV---KG-E 421
+Q+A+AGFY G D+ CF C L W+P+++PW +H + P C ++ KG E
Sbjct: 32 KEQLARAGFYALGEG---DKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQE 88
Query: 422 YTQNVPLS 429
Y N+ L+
Sbjct: 89 YINNIHLT 96
Score = 56.4 bits (136), Expect = 1e-10
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 228 FPIDSQPSDHRNLMFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
FP + + + M AR TF W + +Q+A+AGFY G D+ CF
Sbjct: 1 FPNSTNLPRNPS-MADYEARIFTFGTWIYSVN----KEQLARAGFYALGEG---DKVKCF 52
>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 137
Score = 93.5 bits (232), Expect = 4e-23
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 359 DRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV 418
P++MA+AGF H P+ D A CF C L WEP D+P EH++HS C F+
Sbjct: 24 LEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFL 83
Query: 419 ---KGEYTQNV 426
K +
Sbjct: 84 SVKKQFEELTL 94
Score = 68.1 bits (166), Expect = 3e-14
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 241 MFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
F + R TF WP ++ P++MA+AGF H P+ D A CF
Sbjct: 8 PFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCF 54
>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP,
livin) {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 90.3 bits (224), Expect = 2e-22
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 347 RFLSSAQWYRDDDRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWA 406
R S W P+ +A AGF+H D+ CF C L W+ D+PW
Sbjct: 13 RLASFYDWPLT----AEVPPELLAAAGFFHTGHQ---DKVRCFFCYGGLQSWKRGDDPWT 65
Query: 407 EHERHSPCCPFV---KG-EYTQNV 426
EH + P C F+ KG EY N+
Sbjct: 66 EHAKWFPGCQFLLRSKGQEYINNI 89
Score = 59.4 bits (144), Expect = 1e-11
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 241 MFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
M SE R +F WP P+ +A AGF+H D+ CF
Sbjct: 7 MGSEELRLASFYDWPL--TAEVPPELLAAAGFFHTGHQ---DKVRCF 48
>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens)
[TaxId: 9606]}
Length = 111
Score = 86.9 bits (215), Expect = 4e-21
Identities = 28/74 (37%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 347 RFLSSAQWYRDDDRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWA 406
R S W P ++A AG Y+ G D+ CF C L WEP D W+
Sbjct: 40 RLKSFQNWPDY----AHLTPRELASAGLYYTGIG---DQVQCFACGGKLKNWEPGDRAWS 92
Query: 407 EHERHSPCCPFVKG 420
EH RH P C FV G
Sbjct: 93 EHRRHFPNCFFVLG 106
Score = 61.4 bits (149), Expect = 4e-12
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 216 INERLNCLHPTPFPIDSQPSDHRNL--MFSEAARRETFAKWPHMDYKWALPDQMAQAGFY 273
+ L T +D + + M+SE AR ++F WP Y P ++A AG Y
Sbjct: 7 SETHADYLLRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWPD--YAHLTPRELASAGLY 64
Query: 274 HQPSGTGYDRAMCF 287
+ G D+ CF
Sbjct: 65 YTGIG---DQVQCF 75
>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 85.3 bits (211), Expect = 8e-21
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 347 RFLSSAQWYRDDDRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWA 406
R + W + P+Q+A AGFY+ D CF C L CWE D+PW
Sbjct: 7 RMRTFMYWPSS----VPVQPEQLASAGFYYVGRN---DDVKCFCCDGGLRCWESGDDPWV 59
Query: 407 EHERHSPCCPFV---KG-EYTQNV 426
EH + P C F+ KG E+ +
Sbjct: 60 EHAKWFPRCEFLIRMKGQEFVDEI 83
Score = 60.6 bits (147), Expect = 4e-12
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 241 MFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
M + AAR TF WP P+Q+A AGFY+ D CF
Sbjct: 1 MQTHAARMRTFMYWPS--SVPVQPEQLASAGFYYVGRN---DDVKCF 42
>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 105
Score = 85.7 bits (212), Expect = 9e-21
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 366 PDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERHSPCCPFV---KG-E 421
P Q+A+AGF++ G DR CF+C L+ W DEPW +H C FV KG
Sbjct: 31 PHQLAEAGFFYTGVG---DRVRCFSCGGGLMDWNDNDEPWEQHALWLSQCRFVKLMKGQL 87
Query: 422 YTQNV 426
Y V
Sbjct: 88 YIDTV 92
Score = 56.8 bits (137), Expect = 1e-10
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 241 MFSEAARRETFAKWPHMDYKWALPDQMAQAGFYHQPSGTGYDRAMCF 287
E AR TF WP P Q+A+AGF++ G DR CF
Sbjct: 10 YAIETARLRTFEAWPRNLK--QKPHQLAEAGFFYTGVG---DRVRCF 51
>d1p94a_ a.43.1.3 (A:) Plasmid partition protein ParG {Salmonella
enterica [TaxId: 28901]}
Length = 76
Score = 29.6 bits (66), Expect = 0.25
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 161 IEAAQSEPKKSAKSQKWNIICLELKHASFKTAC 193
+E + P S K ++ N+ E KH FK AC
Sbjct: 21 LERVVTAPVSSGKIKRVNVNFDEEKHTRFKAAC 53
>d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage
RB69 [TaxId: 12353]}
Length = 528
Score = 30.4 bits (67), Expect = 1.2
Identities = 20/203 (9%), Positives = 50/203 (24%), Gaps = 31/203 (15%)
Query: 13 KEEEEKEEEEGPIVRDPDSVIYHPNLNILIVLSRNAECIVVDINS-------------GC 59
+ G V++P Y + D+ S
Sbjct: 8 GRSHPVQPYPGAFVKEPIPNRYKY-------------VMSFDLTSLYPSIIRQVNISPET 54
Query: 60 VLRKCAFAEEGQPIKGAYLPSYDKVLLTDTKSVGVRSDYNGVL--LLDTMLQT--CLKSK 115
+ A I D + + D +GV+ + + K
Sbjct: 55 IAGTFKVAPLHDYINAVAERPSDVYSCSPNGMMY-YKDRDGVVPTEITKVFNQRKEHKGY 113
Query: 116 NNPVKLEMLVSEAILLQQTLKTIETTGCEFSPGLWTEVLTELETKIEAAQSEPKKSAKSQ 175
+ + + L L E ++ E+ +++ + +E A+
Sbjct: 114 MLAAQRNGEIIKEALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRT 173
Query: 176 KWNIICLELKHASFKTACYSLVC 198
+ + ++ + Y +
Sbjct: 174 EVAGMTAQINRKLLINSLYGALG 196
>d1bwva2 d.58.9.1 (A:7-149) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Length = 144
Score = 27.4 bits (61), Expect = 3.6
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 143 CEFSPGLWTEVLTELET 159
E S WT V T+L T
Sbjct: 54 GESSTATWTVVWTDLLT 70
>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas
putida [TaxId: 303]}
Length = 103
Score = 26.7 bits (59), Expect = 3.9
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 491 YHETVPCWYSTMYDLVWRIARLPSPWSRV 519
E P ++S Y++ ++ L + R+
Sbjct: 3 RDEAAPWFWSDQYEIGLKMVGLSEGYDRI 31
>d1vjua_ d.248.1.1 (A:) Hypothetical protein Lmaj006828 {Leishmania
major [TaxId: 5664]}
Length = 302
Score = 27.7 bits (61), Expect = 5.4
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 11/39 (28%)
Query: 526 GFYPEQ-IMLDLGTA----------DILLSCPPHAAWLY 553
G Y E +++D GT IL+S PP A W Y
Sbjct: 240 GRYAEFNLVIDRGTKFGLQSGGRTESILISLPPRARWGY 278
>d1wdda2 d.58.9.1 (A:11-150) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Rice (Oryza sativa) [TaxId:
4530]}
Length = 140
Score = 26.6 bits (59), Expect = 6.9
Identities = 11/37 (29%), Positives = 12/37 (32%), Gaps = 10/37 (27%)
Query: 143 CEFSPGLWTEVLTELET----------KIEAAQSEPK 169
E S G WT V T+ T IE E
Sbjct: 49 AESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEDN 85
>d1tkla_ d.248.1.1 (A:) Coproporphyrinogen III oxidase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 27.4 bits (60), Expect = 7.0
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 12/41 (29%)
Query: 525 GGFYPEQ-IMLDLGTA-----------DILLSCPPHAAWLY 553
G Y E ++ D GT IL+S P HA+WLY
Sbjct: 260 RGRYVEFNLIYDRGTQFGLRTPGSRVESILMSLPEHASWLY 300
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 470
Score = 27.8 bits (60), Expect = 7.2
Identities = 13/166 (7%), Positives = 35/166 (21%), Gaps = 3/166 (1%)
Query: 352 AQWYRDDDRAIWALPDQMAQAGFYHQPSGTGDDRAMCFTCIVCLVCWEPTDEPWAEHERH 411
+ A+W P+ A + ++ +
Sbjct: 166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVN 225
Query: 412 SPCCPFV---KGEYTQNVPLSVTYATAPALAMTHALNPDSTLVDITTLPGYIPLISRDST 468
FV + S+ ++ + D T + ++ +
Sbjct: 226 PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYS 285
Query: 469 VLVLNYIRQLKTLPRCLAISRSYHETVPCWYSTMYDLVWRIARLPS 514
V+ + + CL + + W +
Sbjct: 286 VMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN 331
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 514
Score = 27.1 bits (59), Expect = 9.2
Identities = 16/136 (11%), Positives = 38/136 (27%), Gaps = 2/136 (1%)
Query: 408 HERHSPCCPFVKGEYTQNVPLSVT-YATAPALAMTHALNPDSTLVDITTLPGYIPLISRD 466
+ +T + + YAT P + + DS P + +
Sbjct: 63 TIECLGAHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLE 122
Query: 467 STVLVLNYIRQLKTLPRCLAISRSYHETVPCWYSTMYDLVWRIARLPSPWSRVQFPPEGG 526
+ ++I LK + + + Y Y+ I + + ++ +
Sbjct: 123 DIEISFDHIVPLK-YSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWN 181
Query: 527 FYPEQIMLDLGTADIL 542
+ I+ D
Sbjct: 182 HTRDNILNAASILDAT 197
>d1lrza2 d.108.1.4 (A:1-165) Methicillin resistance protein FemA
{Staphylococcus aureus [TaxId: 1280]}
Length = 165
Score = 26.4 bits (58), Expect = 9.6
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 262 ALPDQMAQAGFYHQPSGTGYD 282
D+M+ GF H G+D
Sbjct: 130 WFFDKMSNLGFEHTGFHKGFD 150
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.404
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,991,070
Number of extensions: 139028
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 32
Length of query: 828
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 735
Effective length of database: 1,130,706
Effective search space: 831068910
Effective search space used: 831068910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.0 bits)