BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13382
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZW25|CHM2A_DANRE Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a
PE=2 SV=1
Length = 220
Score = 286 bits (733), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 155/237 (65%), Positives = 192/237 (81%), Gaps = 17/237 (7%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
ME LFGR+ TPEEMLR+NQRALN+AMRDLDRE+Q +EQQEKK+IADIKKMAK+GQM++VK
Sbjct: 1 MESLFGRRKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVK 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
IMAKDLVRTR+Y KKF+MM+ANIQAVSLKIQTL+S N+MA+AMKG ++AM MNRQ+ LP
Sbjct: 61 IMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLP 120
Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
QIQ+I+ EFE+QSEIMDMKEEMMNDA+DDAM ++DE+E++AVV+QVLDELGL L D+L+
Sbjct: 121 QIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLSDELS 180
Query: 181 SIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRRE 237
++P S+ GK P TL+DADADL+ RL+NLRR+
Sbjct: 181 NLPATGGSLSVAAGKKAEPQP-----------------TLADADADLEERLNNLRRD 220
>sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2a OS=Xenopus tropicalis
GN=chmp2a PE=2 SV=1
Length = 220
Score = 270 bits (689), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 138/189 (73%), Positives = 172/189 (91%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
ME+LFGR+ TPEEMLR+NQRALNKAMR++DRE+Q +EQQEKK+IADIKKMAK+GQM++VK
Sbjct: 1 MEFLFGRRKTPEEMLRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQMDAVK 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
IMAKDLVRTR+Y KKF+MM+ANIQAVSLKIQTL+S N+MA+AMKG ++AM MNRQ+ LP
Sbjct: 61 IMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLP 120
Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
QIQ+I+ EFEKQSEIMDMKEEMMNDA+DDAM ++DE+E++AVV+QVLDELGL L D+L+
Sbjct: 121 QIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELS 180
Query: 181 SIPDPASSM 189
++P S+
Sbjct: 181 NLPSTGGSL 189
>sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a
PE=2 SV=1
Length = 220
Score = 269 bits (688), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 137/189 (72%), Positives = 172/189 (91%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
ME+LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +EQQEKK+IADIKKMAK+GQM++VK
Sbjct: 1 MEFLFGRRKTPEELLRQNQRALNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQMDAVK 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
IMAKDLVRTR+Y KKF+MM+ANIQAVSLKIQTL+S N+MA+AMKG ++AM MNRQ+ LP
Sbjct: 61 IMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLP 120
Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
QIQ+I+ EFEKQSEIMDMKEEMMNDA+DDAM ++DE+E++AVV+QVLDELGL L D+L+
Sbjct: 121 QIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELS 180
Query: 181 SIPDPASSM 189
++P S+
Sbjct: 181 NLPSTGGSL 189
>sp|Q9DB34|CHM2A_MOUSE Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a
PE=1 SV=1
Length = 222
Score = 258 bits (659), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 131/189 (69%), Positives = 170/189 (89%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM++V+
Sbjct: 1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
IMAKDLVRTR+Y +KF++M+ANIQAVSLKIQTL+S N+MA+AMKG ++AM MNRQ+ LP
Sbjct: 61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 120
Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
QIQ+I+ EFE+Q+EIMDMKEEMMNDA+DDAM +EDE+E++AVV+QVLDELGL L D+L+
Sbjct: 121 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS 180
Query: 181 SIPDPASSM 189
++P S+
Sbjct: 181 NLPSTGGSL 189
>sp|O43633|CHM2A_HUMAN Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A
PE=1 SV=1
Length = 222
Score = 258 bits (658), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 131/189 (69%), Positives = 170/189 (89%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM++V+
Sbjct: 1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
IMAKDLVRTR+Y +KF++M+ANIQAVSLKIQTL+S N+MA+AMKG ++AM MNRQ+ LP
Sbjct: 61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 120
Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
QIQ+I+ EFE+Q+EIMDMKEEMMNDA+DDAM +EDE+E++AVV+QVLDELGL L D+L+
Sbjct: 121 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS 180
Query: 181 SIPDPASSM 189
++P S+
Sbjct: 181 NLPSTGGSL 189
>sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A
PE=2 SV=1
Length = 220
Score = 236 bits (603), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 130/189 (68%), Positives = 166/189 (87%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M+ LFGR+ TPEE+LR+NQRAL +AMR+LDRE+Q +E QEKK+I DIKKMAK+GQM++VK
Sbjct: 1 MDLLFGRRKTPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVK 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
IMAKDLVRTR+Y KKF+ M+AN+QAVSLKIQTL+S N+MA AMKG ++AM MNRQ+ LP
Sbjct: 61 IMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALAMKGVTKAMATMNRQLKLP 120
Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
QIQ+I+ EFEKQ+ IMDMKEE+MNDA+DDAM ++DE+E++AVV+QVLDELGL L D+LA
Sbjct: 121 QIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVLDELGLNLTDELA 180
Query: 181 SIPDPASSM 189
++P P S+
Sbjct: 181 TLPPPGGSL 189
>sp|Q54DB1|CM2A2_DICDI Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium
discoideum GN=chmp2a2 PE=3 SV=1
Length = 198
Score = 228 bits (581), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 111/191 (58%), Positives = 148/191 (77%)
Query: 3 WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIM 62
+LFG++ TP+E+LR+NQR LNK+MR++DRE+ ++ QEKK+I DIKKMAK+GQM S KIM
Sbjct: 2 FLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKIM 61
Query: 63 AKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQI 122
AKDLVRTR + +KF MK +QAVSL+IQTL+S AMAEAMKG ++AM MNRQMNLPQ
Sbjct: 62 AKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQF 121
Query: 123 QRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLASI 182
+I+ EFE+QS+ MDMKEEMMND MD M+ D +E+++ ++ QVLDE+G+ L QL
Sbjct: 122 TKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVDA 181
Query: 183 PDPASSMMSDK 193
P + ++ K
Sbjct: 182 PTTVGTSVASK 192
>sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1
OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2
Length = 225
Score = 208 bits (529), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/236 (50%), Positives = 172/236 (72%), Gaps = 13/236 (5%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M +FG++ TP E+LR+N+R L+K++R+++RE+Q ++ QEKKLI +IKK AK+GQM +VK
Sbjct: 2 MNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVK 61
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
+MAKDL+RTR +KF +K+ +Q VSL+IQTL+S AM EAMKG ++AM MNRQMNLP
Sbjct: 62 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 121
Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
+Q+I+QEFE+Q+E M+M E+M DA+DDA++ DE+E+ET +V+QVLDE+G+ + +L
Sbjct: 122 SLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELV 181
Query: 181 SIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRR 236
+ P A ++ + K K A G + + GG D+DLQARLDNLR+
Sbjct: 182 NAPSGAVAVPAAKNKVVQAEATG-----AEDSGG--------IDSDLQARLDNLRK 224
>sp|P36108|DID4_YEAST DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DID4 PE=1 SV=2
Length = 232
Score = 194 bits (492), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 164/240 (68%), Gaps = 15/240 (6%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
EW+FG+ +TP+E L+KNQRAL + R+L+REK+ +E Q+KKL+++IKK AK GQ+ + K
Sbjct: 4 FEWVFGKNVTPQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAK 63
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
+ AKDLVRTR Y +KF MKA +QA+SL+IQ +RS + M +M + + MNR MNLP
Sbjct: 64 VQAKDLVRTRNYIQKFDNMKAQLQAISLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLP 123
Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAM-DADEDEDETNAVVTQVLDELGLQLGDQL 179
Q+QRI EFEKQS++M ++E M++A+D+ M D ++++E + +V +VLDE+G+ L QL
Sbjct: 124 QLQRISMEFEKQSDLMGQRQEFMDEAIDNVMGDEVDEDEEADEIVNKVLDEIGVDLNSQL 183
Query: 180 ASIPDPASSMMSDK--GKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRRE 237
S P +++S+ +T + IP G+ S HG + D DLQARL+ L+++
Sbjct: 184 QSTP---QNLVSNAPIAETAMGIPEPIGAG-SEFHG--------NPDDDLQARLNTLKKQ 231
>sp|O14177|DID4_SCHPO ESCRT-III complex subunit did4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=did4 PE=3 SV=2
Length = 210
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 130/187 (69%), Gaps = 4/187 (2%)
Query: 3 WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIM 62
WLFG +P+E LR +QR+L +A R+LDRE+ ++Q+E+ LI +IK AK G + +I
Sbjct: 6 WLFGGGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAARIQ 65
Query: 63 AKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQI 122
A+DL+R R KK M K +QA+SL++QT+R+ M ++M+G +R + MN+ MN+P +
Sbjct: 66 ARDLMRLRNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNIPAM 125
Query: 123 QRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLASI 182
RI Q+FE+++EIM+ ++EM+++ MDDA ++DE+E + +V +VLDE+G+ L +
Sbjct: 126 ARITQQFERENEIMEQRQEMIDENMDDA-LEEDDEEEADELVNKVLDEIGVDLSQ---GL 181
Query: 183 PDPASSM 189
PD A+ +
Sbjct: 182 PDAATQI 188
>sp|Q0WTY4|VPS2B_ARATH Vacuolar protein sorting-associated protein 2 homolog 2
OS=Arabidopsis thaliana GN=VPS2.2 PE=1 SV=2
Length = 222
Score = 137 bits (345), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 117/180 (65%)
Query: 4 LFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMA 63
+F +K TP++ LR ++R + A R ++RE ++ +EK+L+A+IKK AK G + KI+A
Sbjct: 3 IFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILA 62
Query: 64 KDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQ 123
+ LVR R+ +A I+ V+ Q L + +++ MKG ++AM MN+QM +
Sbjct: 63 RQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQA 122
Query: 124 RILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLASIP 183
+++++F+KQS +DM EMM++A+D+ +D DE E+ET + QVLDE+G+ + QL+S P
Sbjct: 123 KVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAP 182
>sp|Q941D5|VPS2C_ARATH Vacuolar protein sorting-associated protein 2 homolog 3
OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1
Length = 210
Score = 137 bits (345), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 118/180 (65%)
Query: 4 LFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMA 63
+F +K P E+LR+++R + +A R +++E ++ +EKKL+ +IK+ AK G + KI+A
Sbjct: 3 IFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILA 62
Query: 64 KDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQ 123
+ L+R R+ +A ++ ++ Q + + ++A M+G ++AM M++ M+ +
Sbjct: 63 RQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQA 122
Query: 124 RILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLASIP 183
++++EF+KQS MDM EMM+D++DDA+D DE EDET + QVLDE+G+ + QL+S P
Sbjct: 123 KVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSSAP 182
>sp|Q66IV6|CH2BB_XENLA Charged multivesicular body protein 2b-B OS=Xenopus laevis
GN=chmp2b-b PE=2 SV=1
Length = 214
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 124/199 (62%), Gaps = 6/199 (3%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++R+ + L R + R++ +E+QEK+L +IKKMAK G ++ +
Sbjct: 1 MASLFKKK-TVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACR 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
++AK LV+ RK + + + + ++S + + + SQ MA AM ++ MQ +N++M+
Sbjct: 60 VLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQ 119
Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
+ + +Q F+K++ M+M +EM+ND +DD DA EDE+E+ +V QVLDE+G+++ ++A
Sbjct: 120 KTLQTMQNFQKENMKMEMTDEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMA 179
Query: 181 SIPD-----PASSMMSDKG 194
P P++S KG
Sbjct: 180 KAPSAAKGLPSTSAAKSKG 198
>sp|Q5RAV2|CHM2B_PONAB Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B
PE=2 SV=1
Length = 213
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 120/191 (62%), Gaps = 1/191 (0%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ R L R + R++ +E+QEK+L +IKKMAK G E+ K
Sbjct: 1 MASLFKKK-TVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACK 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
++AK LV RK + + + + ++S + + + SQ MA AM ++ MQ +N++M+
Sbjct: 60 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQ 119
Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
+ + +Q F+K++ M+M EEM+ND +DD D +DE+E+ +V QVLDE+G+++ ++A
Sbjct: 120 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMA 179
Query: 181 SIPDPASSMMS 191
P A S+ S
Sbjct: 180 KAPSAARSLPS 190
>sp|Q9UQN3|CHM2B_HUMAN Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B
PE=1 SV=1
Length = 213
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 120/191 (62%), Gaps = 1/191 (0%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ R L R + R++ +E+QEK+L +IKKMAK G E+ K
Sbjct: 1 MASLFKKK-TVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACK 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
++AK LV RK + + + + ++S + + + SQ MA AM ++ MQ +N++M+
Sbjct: 60 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQ 119
Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
+ + +Q F+K++ M+M EEM+ND +DD D +DE+E+ +V QVLDE+G+++ ++A
Sbjct: 120 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMA 179
Query: 181 SIPDPASSMMS 191
P A S+ S
Sbjct: 180 KAPSAARSLPS 190
>sp|Q6NVL7|CHM2B_XENTR Charged multivesicular body protein 2b OS=Xenopus tropicalis
GN=chmp2b PE=2 SV=1
Length = 214
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 126/209 (60%), Gaps = 12/209 (5%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++R+ + L R + R++ +E+QEK+L +IKKMAK G ++ +
Sbjct: 1 MASLFKKK-TVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKAGNKDACR 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
++AK LV+ RK + + + + ++S + + + SQ MA AM ++ MQ +N++M+
Sbjct: 60 VLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQ 119
Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
+ + +Q F+K++ M+M EEM+ND +DD DA +DE+E+ +V QVLDE+G+++ ++A
Sbjct: 120 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDDEEESQDIVNQVLDEIGIEISGKMA 179
Query: 181 SIPDPASSMMSDKGKTPVAIPGGSGSNHS 209
P A KG +P S S S
Sbjct: 180 KAPSAA------KG-----LPSTSASKSS 197
>sp|Q7SYR0|CH2BA_XENLA Charged multivesicular body protein 2b-A OS=Xenopus laevis
GN=chmp2b-a PE=2 SV=1
Length = 214
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 125/209 (59%), Gaps = 12/209 (5%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T +++++ + L R + R++ +E+QEK+L +IKKMAK G ++ K
Sbjct: 1 MASLFKKK-TVDDIIKDQNKELKGQQRAITRDRTALEKQEKQLEMEIKKMAKAGNKDACK 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
++AK LV+ RK + + + + ++S + + + SQ MA AM ++ MQ +N++M+
Sbjct: 60 VLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQ 119
Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
+ + +Q F+K++ M+M EEM+ND +DD DA EDE+E+ +V QVLDE+G+++ ++A
Sbjct: 120 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMA 179
Query: 181 SIPDPASSMMSDKGKTPVAIPGGSGSNHS 209
P A KG +P S S +
Sbjct: 180 KAPSAA------KG-----LPSASASKST 197
>sp|Q5F3A2|CHM2B_CHICK Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B
PE=2 SV=1
Length = 214
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 121/191 (63%), Gaps = 1/191 (0%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ R L R + R++ +E+QE++L +IKKMAK G E+ K
Sbjct: 1 MASLFKKK-TVDDIIKEQNRELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACK 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
++AK LV+ RK + + + + ++S + + + SQ MA AM ++ MQ +N++M+
Sbjct: 60 VLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQ 119
Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
+ + +Q F+K++ M+M EEM+ND +DD DA ++E+E+ +V QVLDE+G+++ ++A
Sbjct: 120 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDIVNQVLDEIGIEISGKMA 179
Query: 181 SIPDPASSMMS 191
P A + S
Sbjct: 180 KAPSAARGLPS 190
>sp|Q8BJF9|CHM2B_MOUSE Charged multivesicular body protein 2b OS=Mus musculus GN=Chmp2b
PE=2 SV=1
Length = 213
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 120/191 (62%), Gaps = 1/191 (0%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ R L R + R++ +E+QEK+L +IKKMAK G E+ +
Sbjct: 1 MASLFKKK-TVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACR 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
++AK LV RK + + + + ++S + + + SQ MA AM ++ MQ +N++M+
Sbjct: 60 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQ 119
Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
+ + +Q F+K++ M+M EEM+ND +DD D +DE+E+ +V QVLDE+G+++ ++A
Sbjct: 120 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMA 179
Query: 181 SIPDPASSMMS 191
P A S+ S
Sbjct: 180 KAPSAARSLPS 190
>sp|Q3SX42|CHM2B_BOVIN Charged multivesicular body protein 2b OS=Bos taurus GN=CHMP2B PE=2
SV=1
Length = 213
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 120/191 (62%), Gaps = 1/191 (0%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ R L R + R++ +E+QEK+L +IKKMAK G E+ +
Sbjct: 1 MASLFKKK-TVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACR 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
++AK LV RK + + + + ++S + + + SQ MA AM ++ MQ +N++M+
Sbjct: 60 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQ 119
Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
+ + +Q F+K++ M+M EEM+ND +DD D +DE+E+ +V QVLDE+G+++ ++A
Sbjct: 120 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMA 179
Query: 181 SIPDPASSMMS 191
P A S+ S
Sbjct: 180 KAPSAARSLPS 190
>sp|Q6NXD2|CHM2B_DANRE Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b
PE=2 SV=1
Length = 214
Score = 120 bits (302), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 121/199 (60%), Gaps = 8/199 (4%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ + L R + R++ +E+QEK+L +IKKMAK G ++ K
Sbjct: 1 MTSLFKKK-TVDDVIKEQNKELRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACK 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
++AK LV+ RK + + + + ++S + + + SQ MA AM ++ MQ +N++M+
Sbjct: 60 VLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAMATTTKTMQAVNKKMDPK 119
Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
+ + LQ F+K++ MDM EEMMND +D+ + DE+E+ +V QVLDE+G+++ ++A
Sbjct: 120 KTMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSGDEEESQDIVNQVLDEIGIEISGKMA 179
Query: 181 SIPDPASSMMSDKGKTPVA 199
P A KTP A
Sbjct: 180 HAPSAAR-------KTPSA 191
>sp|Q54GK9|CM2A1_DICDI Charged multivesicular body protein 2a homolog 1 OS=Dictyostelium
discoideum GN=chmp2a1 PE=3 SV=2
Length = 206
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 114/194 (58%), Gaps = 7/194 (3%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M + G K TPE+ L+ ++R L+K R++DRE ++ E++ I IK++AK G+ + K
Sbjct: 1 MSFFGGNKKTPEQELKDSKRELSKGQREMDRELNRLKIVEQEYIGKIKQLAKAGRNDEAK 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLP 120
MA DLV+ R ++ K + AVS K T+++ MA AM ++AM MN+Q +L
Sbjct: 61 RMANDLVKLRGQMERMRATKTTLSAVSTKTTTIKANQTMANAMASATKAMSTMNKQTDLV 120
Query: 121 QIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180
Q+Q+ + E+EKQ++ ++M EEMM D +D +E + ++++V+DE+ L ++
Sbjct: 121 QLQKTMMEYEKQTQRVEMTEEMMQDMFEDDEVD----EEADDILSKVVDEVCLDNYQKMP 176
Query: 181 SIPD---PASSMMS 191
S+ P SS S
Sbjct: 177 SVAQKDLPYSSKTS 190
>sp|O96552|CHMP1_DICDI Charged multivesicular body protein 1 OS=Dictyostelium discoideum
GN=chmp1 PE=3 SV=1
Length = 192
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 89/157 (56%)
Query: 27 RDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAV 86
+ L+++ + EQ EK +KK ++G M+ +I A++ +R + + ++ + + I AV
Sbjct: 13 KQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNYLRLASRIDAV 72
Query: 87 SLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDA 146
+ +++T ++ +M ++M+ R M+L +I +++ +FE+Q E +D++ + +A
Sbjct: 73 ASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFEDLDVQSVYVENA 132
Query: 147 MDDAMDADEDEDETNAVVTQVLDELGLQLGDQLASIP 183
M+ D+ + +++QV DE GL +G Q+ S P
Sbjct: 133 MNQTTTLSTPADQVDLLISQVADEHGLNVGMQMGSAP 169
>sp|Q54P63|CHMP3_DICDI Charged multivesicular body protein 3 OS=Dictyostelium discoideum
GN=chmp3 PE=3 SV=1
Length = 207
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Query: 5 FGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAK 64
F +K TPEE+++K +R L + R LD + + ++ QEKK + IK+ K G +S K +AK
Sbjct: 4 FLKKPTPEELVKKWKRELRREDRGLDTQLRAIDMQEKKTVRMIKERVKAGDQKSAKTLAK 63
Query: 65 DLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQR 124
++V +RK ++ KA + +VS+++Q+ + + + + M+ MN + LP++ +
Sbjct: 64 EIVNSRKAKERIYTAKAQMNSVSMQLQSNLAMTKVQGNLAKSTEIMKMMNDLIKLPELNK 123
Query: 125 ILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLASIP 183
++ + + EEM++D D M ++ E+E V +++DE+ L G Q++S P
Sbjct: 124 VMMAMGSEMTKAGIMEEMISDVFD--MQGEDLEEEAEMEVNKIMDEI-LVSGPQVSSAP 179
>sp|Q6PHF0|CHM1A_DANRE Charged multivesicular body protein 1a OS=Danio rerio GN=chmp1a
PE=2 SV=1
Length = 198
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 89/163 (54%)
Query: 27 RDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAV 86
+ L+R + E+ K A +KK ++ +E ++ A++ +R + ++ M + + AV
Sbjct: 13 KQLERLAKKAEKDSKSEQAKVKKALQQKNVECARVYAENAIRKKNEGLNWLRMASRVDAV 72
Query: 87 SLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDA 146
+ K+QT + +A+ M ++A+ M+L ++ ++ +FE Q + +D+ +M D+
Sbjct: 73 ASKVQTALTMKGVAKNMTQVTKALDKALSSMDLQKVSAVMDKFETQVQNLDVHTSVMEDS 132
Query: 147 MDDAMDADEDEDETNAVVTQVLDELGLQLGDQLASIPDPASSM 189
M A + + + ++ Q+ +E GL++ DQL+ +P AS++
Sbjct: 133 MSSATTLSTPQQQVDDLILQIAEESGLEVEDQLSQLPAGASAL 175
>sp|O14296|VPS24_SCHPO Vacuolar protein sorting-associated protein 24
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps24 PE=3 SV=1
Length = 231
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 94/172 (54%), Gaps = 10/172 (5%)
Query: 3 WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIM 62
+ FG TP+E RK Q + K R LDR+ H++ KK +K++AK+ + +++I+
Sbjct: 7 YFFGP--TPQEQNRKWQSIIRKEQRQLDRQVYHLKAGRKKAEVQLKQLAKQSDITNMRIL 64
Query: 63 AKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQI 122
AK++ R ++ K+ KA + ++SL++ + + M+ ++ MQ+++ + LPQ+
Sbjct: 65 AKEIARANRHGKRLAESKALLGSLSLQLNDQMAMLKIQGTMQSSTKIMQDVSSLIRLPQL 124
Query: 123 QRILQ----EFEKQSEIMDMKEEMMNDAMDD--AMD-ADEDEDETNAVVTQV 167
++ E K + +M++EM DD MD ADEDE E ++T+
Sbjct: 125 SETMRNLSMELTKAGVLEEMRDEMFLPVEDDEELMDLADEDE-EVQEILTKY 175
>sp|O60074|DID2_SCHPO Vacuolar protein-sorting-associated protein 46
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=did2 PE=3 SV=2
Length = 200
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 89/179 (49%), Gaps = 8/179 (4%)
Query: 22 LNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKA 81
L A + L+++ ++E+ +KK +G E +I A + +R ++ + + + +
Sbjct: 11 LKFAAKSLNKQSLKAAKEERAEREKVKKAITKGNSEIARIYASNAIRKQQESLNLLKLSS 70
Query: 82 NIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEE 141
I AVS ++QT + A++ M G R M + MNL I +++ +FE Q + ++++
Sbjct: 71 RIDAVSSRLQTAVTMRAVSGNMAGVVRGMDRAMKTMNLEMISQVMDKFEAQFDDVNVQTG 130
Query: 142 MMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQL--------ASIPDPASSMMSD 192
MN AM D +++ + ++ V DE GL+ + AS+P PA+ + D
Sbjct: 131 YMNKAMGSVTAVDTPQEDVDLLMQTVADEAGLEFNQNMNNNLSVPAASVPTPAAPVEDD 189
>sp|Q921W0|CHM1A_MOUSE Charged multivesicular body protein 1a OS=Mus musculus GN=Chmp1a
PE=1 SV=1
Length = 196
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 83/145 (57%)
Query: 45 ADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMK 104
A +KK ++ +E ++ A++ +R + ++ M + + AV+ K+QT + + + M
Sbjct: 31 AKVKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMA 90
Query: 105 GCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVV 164
++A+ M+L ++ ++ FE+Q + +D+ +M D++ A +++ ++++
Sbjct: 91 QVTKALDKALSAMDLQKVSAVMDRFEQQVQNLDVHTSVMEDSVSSATTLTTPQEQVDSLI 150
Query: 165 TQVLDELGLQLGDQLASIPDPASSM 189
Q+ +E GL++ DQL+ +P+ AS++
Sbjct: 151 VQIAEENGLEVLDQLSQLPEGASAV 175
>sp|Q5R605|CHM1A_PONAB Charged multivesicular body protein 1a OS=Pongo abelii GN=CHMP1A
PE=2 SV=1
Length = 196
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 82/145 (56%)
Query: 45 ADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMK 104
A +KK + +E ++ A++ +R + ++ M + + AV+ K+QT + + + M
Sbjct: 31 AKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMA 90
Query: 105 GCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVV 164
++A+ M+L ++ ++ FE+Q + +D+ +M D+M A +++ ++++
Sbjct: 91 QVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLI 150
Query: 165 TQVLDELGLQLGDQLASIPDPASSM 189
Q+ +E GL++ DQL+ +P+ AS++
Sbjct: 151 MQIAEENGLEVLDQLSQLPEGASAV 175
>sp|Q9HD42|CHM1A_HUMAN Charged multivesicular body protein 1a OS=Homo sapiens GN=CHMP1A
PE=1 SV=1
Length = 196
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 82/145 (56%)
Query: 45 ADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMK 104
A +KK + +E ++ A++ +R + ++ M + + AV+ K+QT + + + M
Sbjct: 31 AKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMA 90
Query: 105 GCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVV 164
++A+ M+L ++ ++ FE+Q + +D+ +M D+M A +++ ++++
Sbjct: 91 QVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLI 150
Query: 165 TQVLDELGLQLGDQLASIPDPASSM 189
Q+ +E GL++ DQL+ +P+ AS++
Sbjct: 151 MQIAEENGLEVLDQLSQLPEGASAV 175
>sp|Q6NUD8|CHM1A_XENLA Charged multivesicular body protein 1a OS=Xenopus laevis GN=chmp1a
PE=2 SV=1
Length = 196
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 84/152 (55%)
Query: 45 ADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMK 104
A +KK ++ +E ++ A++ +R + ++ M + + AV+ K+QT + + + M
Sbjct: 31 AKVKKALQQKNVEVARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTAVTMKGVTKNMA 90
Query: 105 GCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVV 164
++A+ M+L ++ ++ +F++Q + +D+ +M D+M AM +++ + ++
Sbjct: 91 QVTKALDKALSSMDLQKVSAVMDKFDQQVQNLDVHTSVMEDSMSSAMTLTTPQEQVDNLI 150
Query: 165 TQVLDELGLQLGDQLASIPDPASSMMSDKGKT 196
Q+ +E GL++ DQL +P ASS+ +T
Sbjct: 151 VQIAEENGLEVMDQLNQLPQGASSVGESSTRT 182
>sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1
OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1
Length = 229
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 116/228 (50%), Gaps = 16/228 (7%)
Query: 11 PEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTR 70
P+++LR QR L + R+++R+ + ++++E+ + IK+ AK M S K +AK++V +R
Sbjct: 14 PKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSR 73
Query: 71 KYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRA---MQNMNRQMNLPQIQRILQ 127
+ + KA + ++S+ L A+A + S++ M+ +N M PQ+ +Q
Sbjct: 74 RTVNRLYENKAQMNSISMH---LGESVAIARTVGHLSKSAEVMKLVNNLMKAPQMAATMQ 130
Query: 128 EFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLASIPDPAS 187
EF K+ + EE +N+A+D+A+D+++ E+E + V +VL + G+ A +P
Sbjct: 131 EFSKEMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIA---GETAAELPVAVR 187
Query: 188 SMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLR 235
K + +P S G + +++ARL +R
Sbjct: 188 -------KERIKVPAQKASTSREEEAVAEGVDDEEELEEIRARLAKVR 228
>sp|Q8CGS4|CHMP3_RAT Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Chmp3
PE=1 SV=3
Length = 223
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 106/195 (54%), Gaps = 9/195 (4%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P+E++ + + K MR +DR+ + ++++E+K+ +K AK+GQ E +
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVV 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQ 121
+AK+++R+RK K KA++ +V + ++ + +A +++ + M+ M + +P+
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPE 122
Query: 122 IQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGL-QLGDQLA 180
IQ ++E K+ + EEM+ D + D +E E+ + ++L E+ LG +
Sbjct: 123 IQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPS 182
Query: 181 SI------PDPASSM 189
+ P+PA +M
Sbjct: 183 KVTDALPEPEPAGAM 197
>sp|Q9CQ10|CHMP3_MOUSE Charged multivesicular body protein 3 OS=Mus musculus GN=Chmp3 PE=1
SV=3
Length = 224
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 106/195 (54%), Gaps = 9/195 (4%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P+E++ + + K MR +DR+ + ++++E+K+ +K AK+GQ E +
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVV 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQ 121
+AK+++R+RK K KA++ +V + ++ + +A +++ + M+ M + +P+
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPE 122
Query: 122 IQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGL-QLGDQLA 180
IQ ++E K+ + EEM+ D + D +E E+ + ++L E+ LG +
Sbjct: 123 IQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPS 182
Query: 181 SI------PDPASSM 189
+ P+PA +M
Sbjct: 183 KVTDALPEPEPAGAM 197
>sp|Q6NRM7|CHMP3_XENLA Charged multivesicular body protein 3 OS=Xenopus laevis GN=chmp3
PE=2 SV=3
Length = 220
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 104/189 (55%), Gaps = 7/189 (3%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P++++ + + K MR +DR+ + ++++++K+ IK+ AK+G E+ I
Sbjct: 3 LFGKTQERPPKDLVNEWSLKIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREACVI 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQ 121
+AK++V+++K K KA++ +V + ++ + ++ +++ + M+ M + LP+
Sbjct: 63 LAKEVVQSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKLPE 122
Query: 122 IQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDE-----LGLQLG 176
IQ ++E K+ + EEM+ D + D DE E++ + ++L E LG
Sbjct: 123 IQATMRELSKEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRILFEVTAGALGKAPS 182
Query: 177 DQLASIPDP 185
++P+P
Sbjct: 183 KVTDALPEP 191
>sp|Q5ZKX1|CHM1B_CHICK Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B
PE=2 SV=1
Length = 199
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 89/158 (56%)
Query: 22 LNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKA 81
L A ++L+R + +++EK A IKK ++G ME +I A++ +R + A F+ M A
Sbjct: 11 LKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAINFLRMSA 70
Query: 82 NIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEE 141
+ AV+ ++QT + + ++M G ++M + MNL +I ++ +FE Q E +D++ +
Sbjct: 71 RVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQ 130
Query: 142 MMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQL 179
M + M + +++ + ++ ++ DE GL L +L
Sbjct: 131 QMENTMSNTTTLTTPQNQVDMLLQEMADEAGLDLNMEL 168
>sp|Q5RAU5|CHMP3_PONAB Charged multivesicular body protein 3 OS=Pongo abelii GN=CHMP3 PE=2
SV=3
Length = 222
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 104/192 (54%), Gaps = 7/192 (3%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P+E++ + + K MR +DR+ + ++++E+K+ +K AK+GQ + +
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVV 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQ 121
+AK+++R+RK K KA++ +V + ++ + +A +++ + M+ M + +P+
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPE 122
Query: 122 IQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDE-----LGLQLG 176
IQ ++E K+ + EEM+ D + D +E E+E + ++L E LG
Sbjct: 123 IQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPS 182
Query: 177 DQLASIPDPASS 188
++P+P S
Sbjct: 183 KVTDALPEPEPS 194
>sp|Q7ZVB1|CHM1B_DANRE Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b
PE=2 SV=1
Length = 199
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 72/128 (56%)
Query: 52 KEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQ 111
++G ME +I A++ +R + + F+ M A + AV+ ++QT + N + ++M G + M
Sbjct: 41 QKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMD 100
Query: 112 NMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDEL 171
+ MNL +I ++++FE+Q E +D++ M D+M + + + ++ ++ DE
Sbjct: 101 ATLKSMNLEKISGLMEKFERQFETLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEA 160
Query: 172 GLQLGDQL 179
GL L +L
Sbjct: 161 GLDLNMEL 168
>sp|Q6DF27|CHM1B_XENTR Charged multivesicular body protein 1b OS=Xenopus tropicalis
GN=chmp1b PE=2 SV=1
Length = 199
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 68/126 (53%)
Query: 54 GQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNM 113
G E +I A++ +R + F+ M A + AV+ ++QT + + ++M G ++M
Sbjct: 43 GNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTT 102
Query: 114 NRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGL 173
+ MNL +I ++ +FE Q E +D++ + M D M + +++ + ++ ++ DE GL
Sbjct: 103 LKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGL 162
Query: 174 QLGDQL 179
L +L
Sbjct: 163 DLNMEL 168
>sp|Q58CS7|CHMP3_BOVIN Charged multivesicular body protein 3 OS=Bos taurus GN=CHMP3 PE=2
SV=4
Length = 222
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 88/151 (58%), Gaps = 5/151 (3%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P+E++ + + K MR +DR+ + ++++E+K+ +K AK+GQ + +
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVV 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQ 121
+AK+++R+RK K KA++ +V + ++ + +A +++ + M+ M + +P+
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPE 122
Query: 122 IQRILQEFEKQSEIMDMKEEMMND---AMDD 149
IQ ++E K+ + EEM+ D +MDD
Sbjct: 123 IQATMRELSKEMMKAGIIEEMLEDTFESMDD 153
>sp|Q9Y3E7|CHMP3_HUMAN Charged multivesicular body protein 3 OS=Homo sapiens GN=CHMP3 PE=1
SV=3
Length = 222
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 88/151 (58%), Gaps = 5/151 (3%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P+E++ + + K MR +DR+ + ++++E+K+ +K AK+GQ + +
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIV 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQ 121
+AK+++R+RK K KA++ +V + ++ + +A +++ + M+ M + +P+
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPE 122
Query: 122 IQRILQEFEKQSEIMDMKEEMMND---AMDD 149
IQ ++E K+ + EEM+ D +MDD
Sbjct: 123 IQATMRELSKEMMKAGIIEEMLEDTFESMDD 153
>sp|Q6NY88|CHMP3_DANRE Charged multivesicular body protein 3 OS=Danio rerio GN=chmp3 PE=2
SV=3
Length = 221
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 106/190 (55%), Gaps = 6/190 (3%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P++++ + + K MR +DR+ + ++++E+K+ IK AK+GQ + I
Sbjct: 3 LFGKTQEKPPKDLINEWSLKIRKEMRVIDRQIRDIQREEEKVKRSIKDAAKKGQKDVCII 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQ 121
+AK+++++++ K KA + +V L ++ S +A A++ + M+ M + +P+
Sbjct: 63 LAKEMIQSKRAINKLYASKAQMNSVLLSMKNQLSVLRVAGALQKSTEVMKAMQSLVKIPE 122
Query: 122 IQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGL-QLG---D 177
IQ +++ K+ + EEM+ D ++ D +E E+ A V ++L E+ LG
Sbjct: 123 IQATMRDLSKEMMKAGIIEEMLEDTLEGMDDEEEMEEAAEAEVDKILFEITAGALGKAPS 182
Query: 178 QLASIPDPAS 187
++ +PDP +
Sbjct: 183 KVTDLPDPVA 192
>sp|Q5BKM3|CHMP3_XENTR Charged multivesicular body protein 3 OS=Xenopus tropicalis
GN=chmp3 PE=2 SV=4
Length = 220
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P++++ + + K MR +DR+ + ++++++K+ IK+ AK+G E+ I
Sbjct: 3 LFGKTQERPPKDLVNEWSLKIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREACVI 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQ 121
+AK++V ++K K KA++ +V + ++ + ++ +++ + M+ M + +P+
Sbjct: 63 LAKEVVHSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKIPE 122
Query: 122 IQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDEL 171
IQ +++ K+ + EEM+ D + D DE E++ + ++L E+
Sbjct: 123 IQATMRDLSKEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRILFEI 172
>sp|Q7SZB5|CHM1B_XENLA Charged multivesicular body protein 1b OS=Xenopus laevis GN=chmp1b
PE=2 SV=1
Length = 199
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 68/126 (53%)
Query: 54 GQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNM 113
G E +I A++ +R + F+ M A + AV+ ++QT + + ++M G ++M
Sbjct: 43 GNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDAT 102
Query: 114 NRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGL 173
+ MNL +I ++ +FE Q E +D++ + M D M + +++ + ++ ++ DE GL
Sbjct: 103 LKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGL 162
Query: 174 QLGDQL 179
L +L
Sbjct: 163 DLSMEL 168
>sp|Q4R574|CHMP3_MACFA Charged multivesicular body protein 3 OS=Macaca fascicularis
GN=CHMP3 PE=2 SV=3
Length = 222
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 103/192 (53%), Gaps = 7/192 (3%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P+E++ + + K MR +DR+ + ++++E+K+ +K AK+GQ + +
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVV 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQ 121
+AK+++R+RK K KA++ +V + ++ + +A +++ + M+ M + +P+
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPE 122
Query: 122 IQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDE-----LGLQLG 176
I+ ++E K+ + EEM+ D + D +E E+ + ++L E LG
Sbjct: 123 IRATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPS 182
Query: 177 DQLASIPDPASS 188
++P+P S
Sbjct: 183 KVTDALPEPEPS 194
>sp|Q7LBR1|CHM1B_HUMAN Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B
PE=1 SV=1
Length = 199
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 70/127 (55%)
Query: 53 EGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQN 112
+G ME +I A++ +R + A F+ M A + AV+ ++QT + + ++M G ++M
Sbjct: 42 KGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDA 101
Query: 113 MNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELG 172
+ MNL +I ++ +FE Q E +D++ + M D M +++ + ++ ++ DE G
Sbjct: 102 TLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAG 161
Query: 173 LQLGDQL 179
L L +L
Sbjct: 162 LDLNMEL 168
>sp|Q9CQD4|CH1B2_MOUSE Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2
PE=2 SV=2
Length = 199
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 68/126 (53%)
Query: 54 GQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNM 113
G E +I A++ +R + A F+ M A + AV+ ++QT + + ++M G ++M
Sbjct: 43 GNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDAT 102
Query: 114 NRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGL 173
R MNL +I ++ +FE Q E +D++ + M D M +++ + ++ ++ DE GL
Sbjct: 103 LRSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGL 162
Query: 174 QLGDQL 179
L +L
Sbjct: 163 DLNMEL 168
>sp|Q5E994|CHM1B_BOVIN Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2
SV=1
Length = 199
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 69/127 (54%)
Query: 53 EGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQN 112
+G ME +I A++ +R + A F+ M A + AV+ ++QT + + ++M G ++M
Sbjct: 42 KGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDA 101
Query: 113 MNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELG 172
+ MNL +I ++ +FE Q E +D++ + M D M + + + ++ ++ DE G
Sbjct: 102 TLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAG 161
Query: 173 LQLGDQL 179
L L +L
Sbjct: 162 LDLNMEL 168
>sp|Q99LU0|CH1B1_MOUSE Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1
PE=1 SV=1
Length = 199
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 87/158 (55%)
Query: 22 LNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKA 81
L A ++L+R + +++EK A IKK ++G ME +I A++ +R + F+ M A
Sbjct: 11 LKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGVNFLRMSA 70
Query: 82 NIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEE 141
+ AV+ ++QT + + ++M G ++M + MNL +I ++ +FE Q E +D++ +
Sbjct: 71 RVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQ 130
Query: 142 MMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQL 179
M D M +++ + ++ ++ DE GL L +L
Sbjct: 131 QMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMEL 168
>sp|P36095|VPS24_YEAST Vacuolar protein-sorting-associated protein 24 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS24 PE=1
SV=1
Length = 224
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 13/174 (7%)
Query: 14 MLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYA 73
+LRKN R + K++R+L + +Q IKK AK+ + +V++ AK+L + K
Sbjct: 23 VLRKNGRNIEKSLRELTVLQNKTQQL-------IKKSAKKNDVRTVRLYAKELYQINKQY 75
Query: 74 KKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQS 133
+ +A + +V +KI N ++ M + M+ +N + LPQ++ + E EK+
Sbjct: 76 DRMYTSRAQLDSVRMKIDEAIRMNTLSNQMADSAGLMREVNSLVRLPQLRNTMIELEKEL 135
Query: 134 EIMDMKEEMMNDAMDDAMDADEDED-----ETNAVVTQVLDELGLQLGDQLASI 182
+ EM++D M+ D E+ D E N +V Q +E + DQ+ ++
Sbjct: 136 MKSGIISEMVDDTMESVGDVGEEMDEAVDEEVNKIVEQYTNE-KFKNVDQVPTV 188
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.126 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,766,224
Number of Sequences: 539616
Number of extensions: 3312350
Number of successful extensions: 23495
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 539
Number of HSP's that attempted gapping in prelim test: 22855
Number of HSP's gapped (non-prelim): 1141
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)