Query psy13382
Match_columns 237
No_of_seqs 186 out of 765
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 18:03:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13382.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13382hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3230|consensus 100.0 3E-60 6.4E-65 393.1 28.0 223 1-237 1-224 (224)
2 KOG3231|consensus 100.0 6.2E-48 1.3E-52 312.7 24.3 208 1-236 1-208 (208)
3 KOG3232|consensus 100.0 6E-44 1.3E-48 291.1 25.4 197 14-236 6-202 (203)
4 KOG3229|consensus 100.0 8.3E-44 1.8E-48 297.4 23.9 180 4-186 3-184 (227)
5 PF03357 Snf7: Snf7; InterPro 99.9 4.3E-26 9.4E-31 188.0 11.2 167 17-185 1-169 (171)
6 PTZ00464 SNF-7-like protein; P 99.9 1.8E-22 3.8E-27 173.4 22.1 169 1-172 1-174 (211)
7 KOG1656|consensus 99.9 2.9E-19 6.2E-24 149.9 22.9 165 1-174 4-180 (221)
8 PTZ00446 vacuolar sorting prot 99.8 4.1E-19 8.8E-24 150.0 22.0 165 1-169 1-179 (191)
9 KOG1655|consensus 99.8 6.4E-19 1.4E-23 147.0 20.3 168 1-171 1-174 (218)
10 COG5491 VPS24 Conserved protei 99.6 5E-14 1.1E-18 119.9 17.1 150 29-185 5-162 (204)
11 KOG2910|consensus 99.6 3.5E-12 7.6E-17 106.4 23.6 179 1-191 1-183 (209)
12 KOG2911|consensus 99.2 2.5E-09 5.4E-14 99.3 20.1 156 15-172 231-387 (439)
13 PTZ00446 vacuolar sorting prot 98.1 0.0005 1.1E-08 58.5 18.0 144 22-170 25-176 (191)
14 PTZ00464 SNF-7-like protein; P 98.1 0.0017 3.8E-08 56.1 20.9 168 7-185 12-191 (211)
15 COG5491 VPS24 Conserved protei 97.9 0.00061 1.3E-08 58.4 15.0 95 78-172 56-153 (204)
16 PRK10698 phage shock protein P 97.9 0.0028 6E-08 55.2 19.2 130 8-137 22-176 (222)
17 KOG3230|consensus 97.7 0.0023 5E-08 54.3 15.1 146 22-172 14-167 (224)
18 PF04012 PspA_IM30: PspA/IM30 97.5 0.043 9.4E-07 47.2 20.4 139 9-147 22-188 (221)
19 TIGR02977 phageshock_pspA phag 97.4 0.058 1.3E-06 46.6 20.6 127 9-135 23-174 (219)
20 KOG1656|consensus 97.4 0.034 7.3E-07 47.6 17.5 159 25-190 22-189 (221)
21 PF03357 Snf7: Snf7; InterPro 97.3 0.0025 5.4E-08 52.1 10.2 148 25-178 2-156 (171)
22 KOG3231|consensus 97.3 0.026 5.7E-07 46.8 15.2 158 13-182 18-183 (208)
23 KOG3232|consensus 96.8 0.086 1.9E-06 44.1 14.2 175 2-190 9-187 (203)
24 KOG3229|consensus 96.6 0.4 8.6E-06 41.3 17.9 31 13-43 21-51 (227)
25 PF03398 Ist1: Regulator of Vp 96.5 0.017 3.6E-07 48.1 8.7 156 19-174 1-164 (165)
26 COG1842 PspA Phage shock prote 95.6 1.4 3E-05 38.6 21.3 123 9-138 23-177 (225)
27 KOG1655|consensus 90.7 10 0.00022 32.6 16.7 150 21-174 16-173 (218)
28 KOG2911|consensus 88.4 18 0.00039 34.6 13.8 151 20-175 229-386 (439)
29 PF08569 Mo25: Mo25-like; Int 86.1 4.3 9.3E-05 37.5 8.4 69 1-69 1-75 (335)
30 COG1937 Uncharacterized protei 83.2 12 0.00025 28.1 8.1 48 69-116 8-55 (89)
31 PF02583 Trns_repr_metal: Meta 78.8 23 0.0005 26.0 8.4 48 70-117 5-52 (85)
32 PRK15039 transcriptional repre 76.2 28 0.00061 26.0 8.2 49 69-117 8-56 (90)
33 KOG2910|consensus 74.8 54 0.0012 28.1 15.0 88 28-117 13-109 (209)
34 PRK11352 regulator protein Frm 71.2 41 0.00088 25.2 8.2 47 69-115 8-54 (91)
35 PRK09720 cybC cytochrome b562; 68.8 34 0.00074 26.2 7.2 31 47-77 69-99 (100)
36 PRK07352 F0F1 ATP synthase sub 67.7 68 0.0015 26.4 16.1 46 4-50 38-83 (174)
37 CHL00019 atpF ATP synthase CF0 60.0 1E+02 0.0022 25.6 17.1 48 4-52 43-90 (184)
38 PF07361 Cytochrom_B562: Cytoc 59.3 27 0.00058 26.6 5.2 33 45-77 70-102 (103)
39 PF10458 Val_tRNA-synt_C: Valy 59.1 57 0.0012 22.5 7.1 62 28-91 1-63 (66)
40 PRK15058 cytochrome b562; Prov 57.4 63 0.0014 25.8 7.2 31 47-77 97-127 (128)
41 PRK06231 F0F1 ATP synthase sub 55.1 1.3E+02 0.0029 25.6 15.8 39 12-50 74-112 (205)
42 PRK13428 F0F1 ATP synthase sub 51.6 2.3E+02 0.0049 27.2 16.0 132 11-145 26-166 (445)
43 COG3783 CybC Soluble cytochrom 50.7 36 0.00079 25.9 4.5 31 45-75 67-97 (100)
44 PF11068 YlqD: YlqD protein; 50.1 1.1E+02 0.0023 24.5 7.5 31 18-48 21-51 (131)
45 PF08946 Osmo_CC: Osmosensory 50.0 42 0.0009 22.0 4.1 36 10-45 5-40 (46)
46 PRK13460 F0F1 ATP synthase sub 49.2 1.5E+02 0.0032 24.3 15.8 39 12-50 42-80 (173)
47 TIGR03321 alt_F1F0_F0_B altern 48.4 1.8E+02 0.004 25.3 18.8 159 11-172 30-204 (246)
48 TIGR01144 ATP_synt_b ATP synth 46.3 1.4E+02 0.0031 23.4 16.0 40 11-50 20-59 (147)
49 PRK14473 F0F1 ATP synthase sub 42.1 1.8E+02 0.004 23.4 15.4 40 11-50 33-72 (164)
50 PRK14472 F0F1 ATP synthase sub 41.0 2E+02 0.0044 23.5 16.7 41 11-51 43-83 (175)
51 PF05642 Sporozoite_P67: Sporo 41.0 92 0.002 31.2 6.7 19 159-177 588-606 (727)
52 PRK13461 F0F1 ATP synthase sub 40.7 1.9E+02 0.0041 23.2 16.3 41 11-51 30-70 (159)
53 PRK05431 seryl-tRNA synthetase 39.3 3.4E+02 0.0075 25.8 11.2 35 20-54 31-65 (425)
54 PRK13455 F0F1 ATP synthase sub 39.0 2.2E+02 0.0048 23.5 17.5 48 4-51 45-92 (184)
55 PRK05759 F0F1 ATP synthase sub 38.0 2E+02 0.0044 22.8 16.0 42 11-52 29-70 (156)
56 COG1382 GimC Prefoldin, chaper 37.0 1.2E+02 0.0027 23.9 5.8 42 11-52 71-112 (119)
57 PF04799 Fzo_mitofusin: fzo-li 35.9 1.6E+02 0.0035 24.7 6.7 33 13-45 116-148 (171)
58 PRK08032 fliD flagellar cappin 35.2 2.5E+02 0.0054 27.0 8.8 26 68-93 435-460 (462)
59 PRK06798 fliD flagellar cappin 35.1 2.1E+02 0.0045 27.4 8.3 26 22-47 377-402 (440)
60 KOG2027|consensus 35.0 4E+02 0.0087 25.3 17.7 138 34-175 11-161 (388)
61 PF05816 TelA: Toxic anion res 34.0 3.7E+02 0.008 24.6 12.8 40 11-50 96-135 (333)
62 cd00632 Prefoldin_beta Prefold 33.5 1.2E+02 0.0025 22.8 5.2 41 11-51 64-104 (105)
63 PF04977 DivIC: Septum formati 33.4 1.6E+02 0.0035 20.2 7.0 43 20-64 20-62 (80)
64 PF14842 FliG_N: FliG N-termin 32.8 83 0.0018 23.9 4.2 33 103-136 35-67 (108)
65 PF06305 DUF1049: Protein of u 32.7 78 0.0017 21.5 3.8 23 20-42 44-66 (68)
66 PRK09343 prefoldin subunit bet 30.7 1.4E+02 0.0031 23.2 5.4 41 15-55 76-116 (121)
67 PLN03086 PRLI-interacting fact 29.9 4.4E+02 0.0095 26.4 9.6 65 29-99 5-69 (567)
68 PF04508 Pox_A_type_inc: Viral 27.3 87 0.0019 17.5 2.5 18 20-37 4-21 (23)
69 PF10883 DUF2681: Protein of u 27.2 1.8E+02 0.0039 21.6 5.0 37 25-61 31-68 (87)
70 PF04012 PspA_IM30: PspA/IM30 26.7 3.9E+02 0.0084 22.5 16.1 24 18-41 24-47 (221)
71 PRK07737 fliD flagellar cappin 26.5 4.3E+02 0.0093 25.7 8.9 51 28-93 445-495 (501)
72 PRK04863 mukB cell division pr 26.0 9.8E+02 0.021 26.9 18.6 129 4-138 429-572 (1486)
73 TIGR03544 DivI1A_domain DivIVA 25.3 72 0.0016 19.1 2.2 16 156-171 19-34 (34)
74 PF11500 Cut12: Spindle pole b 25.0 3.9E+02 0.0085 22.0 10.0 69 16-92 69-137 (152)
75 PF08165 FerA: FerA (NUC095) d 24.9 2.1E+02 0.0047 19.9 4.8 25 155-179 7-31 (66)
76 TIGR02492 flgK_ends flagellar 24.6 5.3E+02 0.011 23.3 9.6 81 95-176 135-216 (322)
77 PF12958 DUF3847: Protein of u 24.5 3E+02 0.0065 20.4 8.2 54 21-88 5-58 (86)
78 PF06207 DUF1002: Protein of u 23.0 4.8E+02 0.01 22.7 7.7 22 156-177 173-194 (225)
79 COG4911 Uncharacterized conser 23.0 2.7E+02 0.0058 21.8 5.4 36 4-40 3-41 (123)
80 PF03961 DUF342: Protein of un 22.2 6.8E+02 0.015 23.7 9.8 27 26-52 336-362 (451)
81 PRK12765 flagellar capping pro 21.8 6.1E+02 0.013 25.4 9.1 57 22-93 530-586 (595)
82 PF04111 APG6: Autophagy prote 21.6 6.2E+02 0.013 23.0 11.0 30 20-49 53-82 (314)
83 PRK08724 fliD flagellar cappin 21.5 6.3E+02 0.014 25.8 9.1 22 26-47 619-640 (673)
84 COG1382 GimC Prefoldin, chaper 21.2 3.8E+02 0.0082 21.1 6.0 36 15-50 68-103 (119)
85 PF10078 DUF2316: Uncharacteri 21.2 2.4E+02 0.0051 21.1 4.7 33 116-148 2-34 (89)
86 PRK06664 fliD flagellar hook-a 21.0 5.4E+02 0.012 26.2 8.6 25 68-92 629-653 (661)
87 PRK09343 prefoldin subunit bet 20.7 3.2E+02 0.007 21.2 5.7 37 15-51 69-105 (121)
88 PF12269 zf-CpG_bind_C: CpG bi 20.6 3.8E+02 0.0083 23.7 6.6 48 4-51 16-63 (236)
89 KOG0150|consensus 20.1 4.8E+02 0.011 24.1 7.2 51 13-67 31-81 (336)
No 1
>KOG3230|consensus
Probab=100.00 E-value=3e-60 Score=393.10 Aligned_cols=223 Identities=66% Similarity=0.932 Sum_probs=205.9
Q ss_pred CccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMK 80 (237)
Q Consensus 1 m~~~Fg~k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~ 80 (237)
|+ +||+++||.|.+|+++|.|.+++|+|+|++.+++.++||+..+||+.+|+|++.++||+|++|||.|+++.+|+.++
T Consensus 1 m~-lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~k 79 (224)
T KOG3230|consen 1 MD-LFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMK 79 (224)
T ss_pred CC-cccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHH
Q psy13382 81 ANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDET 160 (237)
Q Consensus 81 aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~ 160 (237)
+||.+|+.++|+.+++..|+.+|+++|++|..||++||||+++++|++|++|++.|++.+|||+|++|++++++++|||.
T Consensus 80 aqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEt 159 (224)
T KOG3230|consen 80 AQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEET 159 (224)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchhhhhhccCCCCCCCCcCccCC-CCCcccCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhhhcC
Q psy13382 161 NAVVTQVLDELGLQLGDQLASIPDPASSMMSDKG-KTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRRE 237 (237)
Q Consensus 161 d~lv~qvldE~g~e~~~~L~~~P~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~L~~RL~~Lr~~ 237 (237)
|++|+|||||||++++.+|.++|+..+++|.+.. ...++.++| ++ ..++.||||++||++||+.
T Consensus 160 d~lvnqVLDEiGvdl~~qL~~~P~~~~~~~~a~~ig~~~a~~~g-----------s~--~~~~~dddLqaRL~~Lrk~ 224 (224)
T KOG3230|consen 160 DDLVNQVLDEIGVDLASQLSSLPSAAGSLPIAKTIGGKKAEAAG-----------SE--FHSDADDDLQARLDNLRKD 224 (224)
T ss_pred HHHHHHHHHHHcccHHHHhccCcccccccchhhccCCccccccc-----------cc--cCCCchhHHHHHHHHHhcC
Confidence 9999999999999999999999998888887632 112222211 11 1245689999999999974
No 2
>KOG3231|consensus
Probab=100.00 E-value=6.2e-48 Score=312.72 Aligned_cols=208 Identities=36% Similarity=0.585 Sum_probs=194.2
Q ss_pred CccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMK 80 (237)
Q Consensus 1 m~~~Fg~k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~ 80 (237)
++ +|++ +||+|+.|++.|.||++.|.|+|++++++++|++|+.+||+.+..||.++||+|||+||..|||+.+-|.++
T Consensus 1 ~n-iF~K-ktvke~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s 78 (208)
T KOG3231|consen 1 AN-IFKK-KTVKEVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVS 78 (208)
T ss_pred CC-cccC-CCHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 35 8987 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHH
Q psy13382 81 ANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDET 160 (237)
Q Consensus 81 aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~ 160 (237)
+++.+++.|-..+.++..|.++|...+++|+.||+.|+|+++..+|.+|++..++|++.+|||+|++|++++.++|+||.
T Consensus 79 ~ki~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs 158 (208)
T KOG3231|consen 79 SKITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEES 158 (208)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchhhhhhccCCCCCCCCcCccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhhhc
Q psy13382 161 NAVVTQVLDELGLQLGDQLASIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRR 236 (237)
Q Consensus 161 d~lv~qvldE~g~e~~~~L~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~L~~RL~~Lr~ 236 (237)
+++|+|||||||||++++++++|+..+ +|.. + +.....+||++.|++||.
T Consensus 159 ~aiVNqVLDEIGIEisgKma~~P~a~s-~~~~-----------------------s--t~kat~~Die~QLa~Lrs 208 (208)
T KOG3231|consen 159 QAIVNQVLDEIGIEISGKMAKAPSARS-LPSA-----------------------S--TSKATISDIERQLAALRS 208 (208)
T ss_pred HHHHHHHHHHhhhhhcchhccCCccCC-CCcc-----------------------c--cCCCcHHHHHHHHHHhcC
Confidence 999999999999999999999998543 2221 0 112346789999999984
No 3
>KOG3232|consensus
Probab=100.00 E-value=6e-44 Score=291.05 Aligned_cols=197 Identities=27% Similarity=0.465 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 14 MLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTL 93 (237)
Q Consensus 14 ~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~a 93 (237)
.+-+..+.|+++.++|.|..++|+++||.++.++|+++++||++.|||||.++||+|++..+|+++++++|+|++++|++
T Consensus 6 ~le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqTa 85 (203)
T KOG3232|consen 6 KLENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQTA 85 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHHHHHHHHhch
Q psy13382 94 RSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGL 173 (237)
Q Consensus 94 ~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~qvldE~g~ 173 (237)
.+|.+++++|.+++++|....+.|||++|+.+|+.|++||+++++..++|+++|++.+..+.|+++||.|+++|+||.|+
T Consensus 86 vtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaGl 165 (203)
T KOG3232|consen 86 VTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAGL 165 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhch
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred hhhhhccCCCCCCCCcCccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhhhc
Q psy13382 174 QLGDQLASIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRR 236 (237)
Q Consensus 174 e~~~~L~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~L~~RL~~Lr~ 236 (237)
|++..|+..-.+ +.|++ ++.+.+++|+|.+||++||.
T Consensus 166 Elnq~lp~~~~~--a~~~~------------------------t~~~~~e~d~L~qRLaaLR~ 202 (203)
T KOG3232|consen 166 ELNQELPQNVVP--AISVK------------------------TSAVVDEEDDLTQRLAALRA 202 (203)
T ss_pred hhhhcCCCCCCC--CcCCC------------------------CccccchhhHHHHHHHHHhc
Confidence 999887532111 11211 11234566999999999995
No 4
>KOG3229|consensus
Probab=100.00 E-value=8.3e-44 Score=297.36 Aligned_cols=180 Identities=27% Similarity=0.496 Sum_probs=171.6
Q ss_pred ccCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKA 81 (237)
Q Consensus 4 ~Fg~--k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~a 81 (237)
+||+ +|||||++|+|++-||++.|.|||+++.+++++++.+..||+++|+|++..|++|||++|+.|+++.|||..++
T Consensus 3 l~~~~~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKA 82 (227)
T KOG3229|consen 3 LFGKTPGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKA 82 (227)
T ss_pred ccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 6776 58999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHH
Q psy13382 82 NIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETN 161 (237)
Q Consensus 82 ql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d 161 (237)
||+||++++..+.++..++++|.+++.+|+.||++|.+|+|..||.+|+++|+++|+|+||++++|+++.|.++.++++|
T Consensus 83 qlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~d 162 (227)
T KOG3229|consen 83 QLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEAD 162 (227)
T ss_pred HHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred HHHHHHHHHhchhhhhhccCCCCCC
Q psy13382 162 AVVTQVLDELGLQLGDQLASIPDPA 186 (237)
Q Consensus 162 ~lv~qvldE~g~e~~~~L~~~P~~~ 186 (237)
++|++||.+|. ++.++++|.+.
T Consensus 163 eEVdkIL~~it---~~~~~~~p~a~ 184 (227)
T KOG3229|consen 163 EEVDKILTEIT---GEKAGEAPLAV 184 (227)
T ss_pred HHHHHHHHHHh---ccccccCCcch
Confidence 99999999996 44566666553
No 5
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=99.93 E-value=4.3e-26 Score=187.98 Aligned_cols=167 Identities=30% Similarity=0.472 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 17 KNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQ 96 (237)
Q Consensus 17 ~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~a~s~ 96 (237)
++.+.|+.+++.|++.+.+|+.+.+++..++|+++++|+...|++|++..++.+++..+++.+..+|+.+..+++++..+
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~ 80 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN 80 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHHHHHHHHhchhh-
Q psy13382 97 NAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQL- 175 (237)
Q Consensus 97 ~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~qvldE~g~e~- 175 (237)
..+..+|+.++++|+.+|+.|++++|..+|++|.++++.+++++++|++.++.. .+++++|++++++++++|++.+.
T Consensus 81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~--~~~dd~ele~eL~~l~~e~~~~~~ 158 (171)
T PF03357_consen 81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQV--DDVDDEELEEELEQLEDEIEEEEE 158 (171)
T ss_dssp HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999998754 45567899999999999999887
Q ss_pred -hhhccCCCCC
Q psy13382 176 -GDQLASIPDP 185 (237)
Q Consensus 176 -~~~L~~~P~~ 185 (237)
...||++|++
T Consensus 159 ~~~~lp~~P~~ 169 (171)
T PF03357_consen 159 EKQQLPSVPST 169 (171)
T ss_dssp -SS-SS---HH
T ss_pred ccccCCcCCCC
Confidence 6666666653
No 6
>PTZ00464 SNF-7-like protein; Provisional
Probab=99.91 E-value=1.8e-22 Score=173.38 Aligned_cols=169 Identities=19% Similarity=0.303 Sum_probs=145.6
Q ss_pred CccccCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH----
Q psy13382 1 MEWLFGRKI-TPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKK---- 75 (237)
Q Consensus 1 m~~~Fg~k~-tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~---- 75 (237)
|++|||+++ .|+..++++...|+.....|++.+.+|+.|..+.+..+++.-. ......|..|..++|.||.+++
T Consensus 1 M~rlFG~~k~~p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~-~~~~~~K~~Al~~LK~KK~~E~ql~~ 79 (211)
T PTZ00464 1 MNRLFGKKNKTPKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRG-MTQSRHKQRAMQLLQQKRMYQNQQDM 79 (211)
T ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999865 6888999999999999999999999999998888888876543 2224468899999999997755
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccc
Q psy13382 76 FMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADE 155 (237)
Q Consensus 76 l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~ 155 (237)
++....+|+.+.+.|+++..+..|..+|+.++++|+.+|+.|++++|+.+|+++..+++..+.|+++|+..++. .++.
T Consensus 80 l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~--~~~~ 157 (211)
T PTZ00464 80 MMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDV--PDDI 157 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CCCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999987642 2234
Q ss_pred cHHHHHHHHHHHHHHhc
Q psy13382 156 DEDETNAVVTQVLDELG 172 (237)
Q Consensus 156 ~eeE~d~lv~qvldE~g 172 (237)
||+|++++++.+..|+.
T Consensus 158 DEdELe~ELe~Le~e~~ 174 (211)
T PTZ00464 158 DEDEMLGELDALDFDME 174 (211)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 66677777777776653
No 7
>KOG1656|consensus
Probab=99.86 E-value=2.9e-19 Score=149.87 Aligned_cols=165 Identities=21% Similarity=0.377 Sum_probs=117.2
Q ss_pred CccccCCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHH
Q psy13382 1 MEWLFGRK-----ITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAK-EGQMESVKIMAKDLVRTRKYAK 74 (237)
Q Consensus 1 m~~~Fg~k-----~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaak-kg~~~~aki~Ak~lvr~rk~~~ 74 (237)
|+||||+. +||++.+. .||-+..-|++ |-+-.++++..++...++ .|.. -|..|.++++++|.++
T Consensus 4 ~~~~FG~~k~~~~~t~~eaI~----kLrEteemL~K---Kqe~Le~ki~~e~e~~A~k~~tk--NKR~AlqaLkrKK~~E 74 (221)
T KOG1656|consen 4 FSRLFGGMKQEAKPTPQEAIQ----KLRETEEMLEK---KQEFLEKKIEQEVENNARKYGTK--NKRMALQALKRKKRYE 74 (221)
T ss_pred HHHHhCcccccCCCChHHHHH----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHH
Confidence 68899985 36665543 34444444444 455556667777666444 3333 4778888888887776
Q ss_pred H-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhh--
Q psy13382 75 K-FMMMKANIQAVSLK---IQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMD-- 148 (237)
Q Consensus 75 ~-l~~~~aql~sv~~~---lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~-- 148 (237)
+ |.+.-..+..+..| |+++..+..|..+|+.++++||.+++.||+++|+.+|+++..|.+.+..|+++|+.+++
T Consensus 75 ~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~ 154 (221)
T KOG1656|consen 75 KQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFG 154 (221)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 5 44444444444444 67788999999999999999999999999999999999999999999999999999986
Q ss_pred hccCccccHHHHHHHHHHHHHHhchh
Q psy13382 149 DAMDADEDEDETNAVVTQVLDELGLQ 174 (237)
Q Consensus 149 ~~~~~~~~eeE~d~lv~qvldE~g~e 174 (237)
..+|+++...|+|+|-+..||.--++
T Consensus 155 a~~DEDEL~~ELdeLeqeeld~~ll~ 180 (221)
T KOG1656|consen 155 ADFDEDELMAELDELEQEELDKELLD 180 (221)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 22444444555555555555544333
No 8
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=99.85 E-value=4.1e-19 Score=150.00 Aligned_cols=165 Identities=16% Similarity=0.339 Sum_probs=135.8
Q ss_pred CccccCCCC-Ch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy13382 1 MEWLFGRKI-TP---------EEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTR 70 (237)
Q Consensus 1 m~~~Fg~k~-tp---------ke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~r 70 (237)
|+|||||++ .| +..+.++...||.+...|++...+|+....++...+|+++++|+.. -|..++|+|
T Consensus 1 m~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~----~Al~~LkrK 76 (191)
T PTZ00446 1 MRFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMS----NAKILLKRK 76 (191)
T ss_pred CccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH----HHHHHHHHH
Confidence 789999965 34 1258888899999999999999999999999999999999999954 477889988
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Q psy13382 71 KYAKK----FMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDA 146 (237)
Q Consensus 71 k~~~~----l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~ 146 (237)
|.+++ ++....+|+.+.+.|+++..+..+..+|+.++++|+.+|+.|++++|..+|+++..+++..+.|+++|+..
T Consensus 77 K~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~ 156 (191)
T PTZ00446 77 KLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFN 156 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 87755 66778888888899999999999999999999999999999999999999999999999999999999976
Q ss_pred hhhccCccccHHHHHHHHHHHHH
Q psy13382 147 MDDAMDADEDEDETNAVVTQVLD 169 (237)
Q Consensus 147 ~~~~~~~~~~eeE~d~lv~qvld 169 (237)
+.+..|+++.++|+++|..+-++
T Consensus 157 ~~~~~DEdELe~ELe~Le~e~l~ 179 (191)
T PTZ00446 157 LLNNVDDDEIDKELDLLKEQTME 179 (191)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 43223333444444444443333
No 9
>KOG1655|consensus
Probab=99.84 E-value=6.4e-19 Score=146.96 Aligned_cols=168 Identities=20% Similarity=0.327 Sum_probs=156.1
Q ss_pred CccccCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH---
Q psy13382 1 MEWLFGRK--ITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKK--- 75 (237)
Q Consensus 1 m~~~Fg~k--~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~--- 75 (237)
|++|||.+ +.|-+.+.++...+.+....++..|.+|+.+-.+++.+|++.-..+-..+.|..|..++++||+|++
T Consensus 1 MnRiFG~~k~k~p~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d 80 (218)
T KOG1655|consen 1 MNRIFGRGKPKEPPPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKD 80 (218)
T ss_pred CcccccCCCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 89999985 3688999999999999999999999999999999999999997777889999999999999998866
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCcc
Q psy13382 76 -FMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDAD 154 (237)
Q Consensus 76 -l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~ 154 (237)
|+..+++|+.+.+..+..+.+..++.+|+.+++.|+.+.+.||+++|..+-++++.-|+..+.++|+++..++. . +
T Consensus 81 ~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~--p-e 157 (218)
T KOG1655|consen 81 SLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNT--P-D 157 (218)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--C-C
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999874 2 3
Q ss_pred ccHHHHHHHHHHHHHHh
Q psy13382 155 EDEDETNAVVTQVLDEL 171 (237)
Q Consensus 155 ~~eeE~d~lv~qvldE~ 171 (237)
.++++++++++.+.+|.
T Consensus 158 ide~dL~aELdaL~~E~ 174 (218)
T KOG1655|consen 158 IDEADLDAELDALGQEL 174 (218)
T ss_pred cCHHHHHHHHHHHHhHh
Confidence 67788888888886665
No 10
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=99.61 E-value=5e-14 Score=119.94 Aligned_cols=150 Identities=27% Similarity=0.371 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 29 LDREKQHMEQQEKKLIADIKKMAKEG--QMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGC 106 (237)
Q Consensus 29 Lere~~kle~eekk~~~~iKkaakkg--~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~a~s~~~~~~am~~~ 106 (237)
+++++.++-.+.+.......+..++- .....+++++.+++.++++ ++|+.+.++||+..++....-+|..+
T Consensus 5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~-------srL~~~~sRLqs~~~~~~e~~~m~~v 77 (204)
T COG5491 5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKAR-------SRLDASISRLQSLDTMLFEKVVMRQV 77 (204)
T ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666555555432 3344566666666655554 66666666666667777777778888
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhhHH---HHHhhhhhhccC--ccccHHHHHHHHHHHHHHhchhhhhhcc
Q psy13382 107 SRAMQNMNRQMN-LPQIQRILQEFEKQSEIMDMKE---EMMNDAMDDAMD--ADEDEDETNAVVTQVLDELGLQLGDQLA 180 (237)
Q Consensus 107 ~k~M~~~n~~m~-l~ki~~~M~ef~~q~e~~~~~~---e~m~d~~~~~~~--~~~~eeE~d~lv~qvldE~g~e~~~~L~ 180 (237)
+..|..++..|| ++.|.++|+.|+.++..++... |.|.+.++...+ ..++.+++|++|+.|++|+|+++.....
T Consensus 78 ~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~~~~ 157 (204)
T COG5491 78 SGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQ 157 (204)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhhHhh
Confidence 888888888888 9999999999999999999999 777777776664 4457889999999999999999997777
Q ss_pred CCCCC
Q psy13382 181 SIPDP 185 (237)
Q Consensus 181 ~~P~~ 185 (237)
++|..
T Consensus 158 ~~~~~ 162 (204)
T COG5491 158 SLPAN 162 (204)
T ss_pred cchhh
Confidence 77763
No 11
>KOG2910|consensus
Probab=99.56 E-value=3.5e-12 Score=106.41 Aligned_cols=179 Identities=17% Similarity=0.326 Sum_probs=140.5
Q ss_pred CccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH--
Q psy13382 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMM-- 78 (237)
Q Consensus 1 m~~~Fg~k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~-- 78 (237)
|..+|+|++ +---...+.-.|+..-+.|-+-.+++++.....+...|++++.|..+.| .-+++++++...|+.
T Consensus 1 MG~lfsK~~-~Itd~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrA----lllLKkKryQE~Ll~qt 75 (209)
T KOG2910|consen 1 MGNLFSKKS-RITDQDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRA----LLLLKKKRYQEELLTQT 75 (209)
T ss_pred CCccccCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH----HHHHHHHHHHHHHHHHH
Confidence 677999843 3233455677889989999999999999999999999999999997655 558888888887664
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCcccc
Q psy13382 79 --MKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADED 156 (237)
Q Consensus 79 --~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~ 156 (237)
.-.+|..+.+.|.-.....++...++..+.+++++|+.|+++.|+.+|++-...++--+.+.+|+++.|.. ++
T Consensus 76 ~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~-----~d 150 (209)
T KOG2910|consen 76 DNQLINLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA-----ED 150 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-----cc
Confidence 33445555666666777889999999999999999999999999999999999999999999999999862 24
Q ss_pred HHHHHHHHHHHHHHhchhhhhhccCCCCCCCCcCc
Q psy13382 157 EDETNAVVTQVLDELGLQLGDQLASIPDPASSMMS 191 (237)
Q Consensus 157 eeE~d~lv~qvldE~g~e~~~~L~~~P~~~~~~~~ 191 (237)
++++.++++.+..|...+ .+++++|+...++|.
T Consensus 151 Eddi~~EldaLese~~~e--~e~PevPs~ep~lPe 183 (209)
T KOG2910|consen 151 EDDILAELDALESELEVE--AELPEVPSTEPELPE 183 (209)
T ss_pred HHHHHHHHHHHHHHhhhh--hhcCCCCCCCCCccc
Confidence 455555555555555433 468888887644443
No 12
>KOG2911|consensus
Probab=99.20 E-value=2.5e-09 Score=99.25 Aligned_cols=156 Identities=13% Similarity=0.178 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 15 LRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLR 94 (237)
Q Consensus 15 ~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~a~ 94 (237)
+.-..-.|..+.-.|.|++..|+.+-++.+.+++.+.|.|....|..|++..-+.-|-+.++.....+|++|-.+|.++.
T Consensus 231 ~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~ 310 (439)
T KOG2911|consen 231 IDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQ 310 (439)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566778999999999999999999999999999999999988888888888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHHHHHHHHhc
Q psy13382 95 SQNAMAEAMKGCSRAMQNMNR-QMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELG 172 (237)
Q Consensus 95 s~~~~~~am~~~~k~M~~~n~-~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~qvldE~g 172 (237)
++.-+..||+.++.+|+.++. ...+++|..+|++...-++....++++|....-... +.++|+++.++..++.+..
T Consensus 311 ~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~--d~~de~lEkEL~~L~~D~~ 387 (439)
T KOG2911|consen 311 TNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNI--DFEDEDLEKELEDLEADEK 387 (439)
T ss_pred ccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCC--ccchHHHHHHHHHHHhccc
Confidence 999999999999999999998 568899999999999999999999999888765433 3345667777776665553
No 13
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=98.12 E-value=0.0005 Score=58.48 Aligned_cols=144 Identities=14% Similarity=0.068 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 22 LNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAK-----DLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQ 96 (237)
Q Consensus 22 Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak-----~lvr~rk~~~~l~~~~aql~sv~~~lq~a~s~ 96 (237)
..+++-.|...+..|++.+..+..+|.+.-. .||.+.+ .+++.=+.+..|.....++++..+.|+.+..+
T Consensus 25 ~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~-----~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~ 99 (191)
T PTZ00446 25 IYKAILKNREAIDALEKKQVQVEKKIKQLEI-----EAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMIN 99 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788889999999999999999999977642 2332221 12222233444666778888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH---HHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHHHHHHHH
Q psy13382 97 NAMAEAMKGCSRAMQNMNRQMNLPQIQRILQE---FEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDE 170 (237)
Q Consensus 97 ~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~e---f~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~qvldE 170 (237)
...+..=..+..+|+..++.|+--.=.-.+++ +..++...-..++=|++++.....++.||+|++++++.+..|
T Consensus 100 iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~e 176 (191)
T PTZ00446 100 LENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQ 176 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 88888778888888888877643321112334 444444444455566777875544567899999999988765
No 14
>PTZ00464 SNF-7-like protein; Provisional
Probab=98.08 E-value=0.0017 Score=56.08 Aligned_cols=168 Identities=14% Similarity=0.175 Sum_probs=120.6
Q ss_pred CCCChHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Q psy13382 7 RKITPEEM---LRKNQRALNKAMRDLDREKQHMEQQEKKL--------IADIKKMAKEGQMESVKIMAKDLVRTRKYAKK 75 (237)
Q Consensus 7 ~k~tpke~---~r~~~r~Lr~~~R~Lere~~kle~eekk~--------~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~ 75 (237)
.++|+.+. +|+-...|.+.+..|++++.++-+.-++. +..++.++| .-|.|=+++-+...+..+
T Consensus 12 p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK-----~KK~~E~ql~~l~~q~~n 86 (211)
T PTZ00464 12 PKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQ-----QKRMYQNQQDMMMQQQFN 86 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 34677655 56666668888888999888887665544 555555655 346788888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHHHHhhhHHHHHhhhhhhccCcc
Q psy13382 76 FMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQE-FEKQSEIMDMKEEMMNDAMDDAMDAD 154 (237)
Q Consensus 76 l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~e-f~~q~e~~~~~~e~m~d~~~~~~~~~ 154 (237)
|..+...|+.......+..++..-+.+|+...+.| .+ =+++.|..-|.+ ++.+.+..+++..-+.-.-+ +|++
T Consensus 87 leq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i-~i---d~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~--~DEd 160 (211)
T PTZ00464 87 MDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKL-NV---DKVEDLQDELADLYEDTQEIQEIMGRAYDVPDD--IDED 160 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CH---HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCHH
Confidence 99999999999999999999999999999888776 23 377777444444 55566666667665532112 4667
Q ss_pred ccHHHHHHHHHHHHHHhchhhhhhccCCCCC
Q psy13382 155 EDEDETNAVVTQVLDELGLQLGDQLASIPDP 185 (237)
Q Consensus 155 ~~eeE~d~lv~qvldE~g~e~~~~L~~~P~~ 185 (237)
+.++|+++|...+..|.....-..++++|+.
T Consensus 161 ELe~ELe~Le~e~~~e~~~~~l~~~~~~p~~ 191 (211)
T PTZ00464 161 EMLGELDALDFDMEKEADASYLADALAVPGT 191 (211)
T ss_pred HHHHHHHHHHHHHhccccchhhhccccCCCC
Confidence 8899999999998888764433334444443
No 15
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=97.92 E-value=0.00061 Score=58.45 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHhhhHHHHHhhhhh-hccC-cc
Q psy13382 78 MMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQ-SEIMDMKEEMMNDAMD-DAMD-AD 154 (237)
Q Consensus 78 ~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q-~e~~~~~~e~m~d~~~-~~~~-~~ 154 (237)
..+++|+++...++...+|.++.+-|..++..|..+.....+++.-.|+...-++ -..++.+.+.++...+ ++.+ ..
T Consensus 56 ~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~ 135 (204)
T COG5491 56 ASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLE 135 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHH
Confidence 3568999999999999999999999999999999999888888887777643322 2256788888887774 4444 44
Q ss_pred ccHHHHHHHHHHHHHHhc
Q psy13382 155 EDEDETNAVVTQVLDELG 172 (237)
Q Consensus 155 ~~eeE~d~lv~qvldE~g 172 (237)
+.++.+..++.++--|..
T Consensus 136 ~lde~v~~v~pEi~lel~ 153 (204)
T COG5491 136 ELDELVNKVLPEIGLELD 153 (204)
T ss_pred HHHHHHHhhchhhhhhhh
Confidence 557777777777655543
No 16
>PRK10698 phage shock protein PspA; Provisional
Probab=97.91 E-value=0.0028 Score=55.18 Aligned_cols=130 Identities=12% Similarity=0.217 Sum_probs=92.8
Q ss_pred CCChHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-------HHHHH
Q psy13382 8 KITPEEMLRKNQRALNK--------------AMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI-------MAKDL 66 (237)
Q Consensus 8 k~tpke~~r~~~r~Lr~--------------~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki-------~Ak~l 66 (237)
--+|...++...+.++. ..+.++|+...++....+...+...|+.+|+-+-||. |+..+
T Consensus 22 aEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~ 101 (222)
T PRK10698 22 AEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLI 101 (222)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 34888777766666654 4567888899999999999999999999999998887 77777
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q psy13382 67 VRTRKYAKK----FMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMD 137 (237)
Q Consensus 67 vr~rk~~~~----l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~ 137 (237)
-..+.++.. .-.+..++..+..+|+.+++-..+.-+=..++.+...+|..+.--.....|..|++--++.+
T Consensus 102 ~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~ 176 (222)
T PRK10698 102 ATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRID 176 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence 776666654 33456667777777777777777776767777777777766655555555655554444433
No 17
>KOG3230|consensus
Probab=97.73 E-value=0.0023 Score=54.28 Aligned_cols=146 Identities=21% Similarity=0.255 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 22 LNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAK----DLVRT-RKYAKKFMMMKANIQAVSLKIQTLRSQ 96 (237)
Q Consensus 22 Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak----~lvr~-rk~~~~l~~~~aql~sv~~~lq~a~s~ 96 (237)
||.+.|.|++-.+.|+|+..+++.+-|+.+- -.|-.|| .+++. -|...|+-+...++.....+||....-
T Consensus 14 Lr~nqRal~~a~ReleRer~~le~qeKklva-----eIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~ 88 (224)
T KOG3230|consen 14 LRENQRALNKATRELERERQKLELQEKKLVA-----EIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLR 88 (224)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666677766666666665543 1122222 22221 233444445555555666666665555
Q ss_pred HHHHHHHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHHHHHHHHhc
Q psy13382 97 NAMAEAMKGCSRAMQNM---NRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELG 172 (237)
Q Consensus 97 ~~~~~am~~~~k~M~~~---n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~qvldE~g 172 (237)
.++..+-...+.+|+.+ ...||-.----.+..+..+|++-..+=+|-.+.|++++|+--+++|-+++-+.|..-.-
T Consensus 89 iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVL 167 (224)
T KOG3230|consen 89 IQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVL 167 (224)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence 55544444444444443 33344433344455666666666666666666666666655445555555555554443
No 18
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=97.49 E-value=0.043 Score=47.16 Aligned_cols=139 Identities=16% Similarity=0.285 Sum_probs=89.5
Q ss_pred CChHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q psy13382 9 ITPEEMLRKNQRALNK--------------AMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAK 74 (237)
Q Consensus 9 ~tpke~~r~~~r~Lr~--------------~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~ 74 (237)
-+|...++...|.+.. ..+.|++++..++.+..+...++..|+++|+-+.||.++........++.
T Consensus 22 EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~ 101 (221)
T PF04012_consen 22 EDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAE 101 (221)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 4777665555555444 44567888888888888999999999999999988888777666655544
Q ss_pred HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHhhhHH
Q psy13382 75 KF-----------MMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQ---MNLPQIQRILQEFEKQSEIMDMKE 140 (237)
Q Consensus 75 ~l-----------~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~---m~l~ki~~~M~ef~~q~e~~~~~~ 140 (237)
.| ..++.+|..+..++..+.+-..+..+-..++++-..++.. +++......++.++...+.+.-..
T Consensus 102 ~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a 181 (221)
T PF04012_consen 102 RLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARA 181 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHH
Confidence 43 3355555556666666666666665555555555555544 455555555555555555555555
Q ss_pred HHHhhhh
Q psy13382 141 EMMNDAM 147 (237)
Q Consensus 141 e~m~d~~ 147 (237)
+.+.+..
T Consensus 182 ~a~~el~ 188 (221)
T PF04012_consen 182 EASAELA 188 (221)
T ss_pred HHHHHhc
Confidence 5555443
No 19
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=97.44 E-value=0.058 Score=46.64 Aligned_cols=127 Identities=13% Similarity=0.225 Sum_probs=75.2
Q ss_pred CChHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----
Q psy13382 9 ITPEEMLRKNQRALNK--------------AMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRT----- 69 (237)
Q Consensus 9 ~tpke~~r~~~r~Lr~--------------~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~----- 69 (237)
.+|...++...+.++. ..+.+++++..++....+...+++.|+++|+-+-||-.+..-...
T Consensus 23 EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~ 102 (219)
T TIGR02977 23 EDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAE 102 (219)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4887666666666654 335678888888888888999999999999988655443222111
Q ss_pred --HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy13382 70 --RKYAKK----FMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEI 135 (237)
Q Consensus 70 --rk~~~~----l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~ 135 (237)
..++.. +..+..+|..+..+++.+++...+..+=..++.+...+|..+.--.+...+..|++-.++
T Consensus 103 ~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~k 174 (219)
T TIGR02977 103 ALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERR 174 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 111211 334555555556666666666555444444566655665555333334445555444444
No 20
>KOG1656|consensus
Probab=97.37 E-value=0.034 Score=47.57 Aligned_cols=159 Identities=18% Similarity=0.240 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 25 AMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKD----LVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMA 100 (237)
Q Consensus 25 ~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~----lvr~rk~~~~l~~~~aql~sv~~~lq~a~s~~~~~ 100 (237)
++-.|..-..-|++.+.-++.+|-.-.+. .||.|+.. ++..=|.+.+|...-+||+++.+.|..+.-+.+-+
T Consensus 22 aI~kLrEteemL~KKqe~Le~ki~~e~e~----~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA 97 (221)
T KOG1656|consen 22 AIQKLRETEEMLEKKQEFLEKKIEQEVEN----NARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENA 97 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcc
Confidence 44444444555666666666666655442 25666543 44445566778899999999999999888877777
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHH---HHhhhhhhccC--ccccHHHHHHHHHHHHHHhchhh
Q psy13382 101 EAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEE---MMNDAMDDAMD--ADEDEDETNAVVTQVLDELGLQL 175 (237)
Q Consensus 101 ~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e---~m~d~~~~~~~--~~~~eeE~d~lv~qvldE~g~e~ 175 (237)
+.=..+-.+|+..-+.|+--.-.--+|+.-+-|++....++ =|++++..-+. .+.||+|+.++++.+..|. +
T Consensus 98 ~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqee---l 174 (221)
T KOG1656|consen 98 NTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEE---L 174 (221)
T ss_pred cccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHH---H
Confidence 77777778888887777665544444455555555554444 46667776665 2468999999999988876 5
Q ss_pred hhhccCCCCCCCCcC
Q psy13382 176 GDQLASIPDPASSMM 190 (237)
Q Consensus 176 ~~~L~~~P~~~~~~~ 190 (237)
...|-+++.++.++|
T Consensus 175 d~~ll~~~~p~v~LP 189 (221)
T KOG1656|consen 175 DKELLDIRAPPVPLP 189 (221)
T ss_pred HHHHhccCCCCCCCC
Confidence 666666555544454
No 21
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=97.33 E-value=0.0025 Score=52.08 Aligned_cols=148 Identities=18% Similarity=0.267 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 25 AMRDLDREKQHMEQQEKKLIADIKKMA---KEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAE 101 (237)
Q Consensus 25 ~~R~Lere~~kle~eekk~~~~iKkaa---kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~a~s~~~~~~ 101 (237)
++..|...+.+|++..+++..+|++.- ++-...+-+..|+.++|.++.+. ....++.....+|+........+.
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~---k~~~~~~~~~~~l~~~~~~ie~a~ 78 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLE---KQLEKLLNQLSNLESVLLQIETAQ 78 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999998763 33444556778888887776654 445677778888888888888888
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHHhhhHHHHHhhhhhhccCcccc--HHHHHHHHHHHHHHhchhhhh
Q psy13382 102 AMKGCSRAMQNMNRQMNLPQIQRILQ--EFEKQSEIMDMKEEMMNDAMDDAMDADED--EDETNAVVTQVLDELGLQLGD 177 (237)
Q Consensus 102 am~~~~k~M~~~n~~m~l~ki~~~M~--ef~~q~e~~~~~~e~m~d~~~~~~~~~~~--eeE~d~lv~qvldE~g~e~~~ 177 (237)
....+..+|+..++.|+ ++...|+ ++..-++.+...-+.++. +++++.+..+ .+.-|+.++..|+++.-+...
T Consensus 79 ~~~~v~~al~~~~~~Lk--~~~~~i~~~~v~~~~d~~~e~~e~~~e-i~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~ 155 (171)
T PF03357_consen 79 SNQQVVKALKQSSKALK--KINKQINLDKVEKLMDDFQEEMEDQDE-ISEALSDSMDQVDDVDDEELEEELEQLEDEIEE 155 (171)
T ss_dssp HHHHHSSS----SHHHH--HHHHSTTSCCHHHHHHHHHHHHHHHTS-----------------TTSTTCHHHHHHHCCCT
T ss_pred HHHHHHHHHHHHHHHHH--HHHHhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHccccCCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999888876643 3443333 333444333333332222 2222322221 455566777777777655544
Q ss_pred h
Q psy13382 178 Q 178 (237)
Q Consensus 178 ~ 178 (237)
.
T Consensus 156 ~ 156 (171)
T PF03357_consen 156 E 156 (171)
T ss_dssp T
T ss_pred h
Confidence 3
No 22
>KOG3231|consensus
Probab=97.26 E-value=0.026 Score=46.83 Aligned_cols=158 Identities=18% Similarity=0.298 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 13 EMLRKNQRALNKAMRDLDREKQHMEQQEKKLIAD-----IKKMAKEG---QMESVKIMAKDLVRTRKYAKKFMMMKANIQ 84 (237)
Q Consensus 13 e~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~-----iKkaakkg---~~~~aki~Ak~lvr~rk~~~~l~~~~aql~ 84 (237)
-.+|...|.|-+.-|.++++-++||.|-++.-.. ++-.+|+= ...-.|.||- ..++..+.+|=-
T Consensus 18 ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~--------s~ki~s~~~QnK 89 (208)
T KOG3231|consen 18 RELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAV--------SSKITSMSTQNK 89 (208)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhh--------hhhhhhhHHHHH
Confidence 3578888888888888888888888888876432 23233310 0011233332 223334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHH
Q psy13382 85 AVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVV 164 (237)
Q Consensus 85 sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv 164 (237)
.+.+++..+.+|..++..|+..++.|.----.-+...++.--.+++ | .-.++.+.++|.|+..-|+++...=|..++
T Consensus 90 ~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMe--m-TeEMiNDTLDdild~sgDeeEs~aiVNqVL 166 (208)
T KOG3231|consen 90 VMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKME--M-TEEMINDTLDDILDGSGDEEESQAIVNQVL 166 (208)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhh--h-HHHHHHhhHHHHhcCCCcHHHHHHHHHHHH
Confidence 4555565566666666666666665543222222333333322222 1 224677888888888777777788888899
Q ss_pred HHHHHHhchhhhhhccCC
Q psy13382 165 TQVLDELGLQLGDQLASI 182 (237)
Q Consensus 165 ~qvldE~g~e~~~~L~~~ 182 (237)
+.|-=|+.--+.. .|++
T Consensus 167 DEIGIEisgKma~-~P~a 183 (208)
T KOG3231|consen 167 DEIGIEISGKMAK-APSA 183 (208)
T ss_pred HHhhhhhcchhcc-CCcc
Confidence 9998888877764 4433
No 23
>KOG3232|consensus
Probab=96.78 E-value=0.086 Score=44.13 Aligned_cols=175 Identities=17% Similarity=0.221 Sum_probs=93.4
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 2 EWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKM---AKEGQMESVKIMAKDLVRTRKYAKKFMM 78 (237)
Q Consensus 2 ~~~Fg~k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKka---akkg~~~~aki~Ak~lvr~rk~~~~l~~ 78 (237)
+.+|..||+.+++-|.+++- +++- |+ |..|++.-|++- +.+=.-+.|=..-.+.|+.=+...|+-.
T Consensus 9 ~~lf~LkF~sk~L~r~a~kc--------eKeE-K~--Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDA 77 (203)
T KOG3232|consen 9 NHLFDLKFTSKQLQRQAKKC--------EKEE-KA--EKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDA 77 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHh--------hhHH-HH--HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888888888888776332 2211 11 122333444430 0000001111111223344455667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHH
Q psy13382 79 MKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDED 158 (237)
Q Consensus 79 ~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~ee 158 (237)
..+++++....-+--.+|..+..+|. .+|+.||=..=-.=+++-=.+|+.---..+..+.+|+++-.-.++.++.+.
T Consensus 78 VaaRvqTavtmr~Vt~sM~gVvK~md---~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~ 154 (203)
T KOG3232|consen 78 VAARVQTAVTMRKVTKSMAGVVKSMD---SALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDS 154 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHH
Confidence 88888877666555666666666666 555555533222223334445655555666777888876544455555444
Q ss_pred HHHHHHHHHHHHhchhhhhhc-cCCCCCCCCcC
Q psy13382 159 ETNAVVTQVLDELGLQLGDQL-ASIPDPASSMM 190 (237)
Q Consensus 159 E~d~lv~qvldE~g~e~~~~L-~~~P~~~~~~~ 190 (237)
=....-+.---|+..++...+ +.+|.+....+
T Consensus 155 Lmq~vADeaGlElnq~lp~~~~~a~~~~t~~~~ 187 (203)
T KOG3232|consen 155 LMQQVADEAGLELNQELPQNVVPAISVKTSAVV 187 (203)
T ss_pred HHHHHHHHhchhhhhcCCCCCCCCcCCCCcccc
Confidence 444555555666766776665 56777665443
No 24
>KOG3229|consensus
Probab=96.61 E-value=0.4 Score=41.25 Aligned_cols=31 Identities=29% Similarity=0.601 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 13 EMLRKNQRALNKAMRDLDREKQHMEQQEKKL 43 (237)
Q Consensus 13 e~~r~~~r~Lr~~~R~Lere~~kle~eekk~ 43 (237)
-.+|+..|.|.+.+|.|.|+.++.++.-|+.
T Consensus 21 ~kiRke~r~ldrqir~iqree~kv~~~iK~a 51 (227)
T KOG3229|consen 21 SKIRKEGRQLDRQIRDIQREEEKVQKSIKQA 51 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888888887776654
No 25
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=96.55 E-value=0.017 Score=48.06 Aligned_cols=156 Identities=16% Similarity=0.284 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 19 QRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNA 98 (237)
Q Consensus 19 ~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~a~s~~~ 98 (237)
|..|+.++..|.-..+|-....+..+.+|-..++.|..+.||+.+.++|+-.+...=|.-+.--.+-+..++........
T Consensus 1 K~~lkla~~Rl~~l~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~ 80 (165)
T PF03398_consen 1 KTQLKLAISRLKLLQNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKE 80 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TS
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 35677888888888888999999999999999999999999999999999999888877777777777777766655433
Q ss_pred HHHHHHHHHH-HHHHHHhcCCHHHHHHHHH----HHHHHHHHhhhH--HHHHhhhhhhccCc-cccHHHHHHHHHHHHHH
Q psy13382 99 MAEAMKGCSR-AMQNMNRQMNLPQIQRILQ----EFEKQSEIMDMK--EEMMNDAMDDAMDA-DEDEDETNAVVTQVLDE 170 (237)
Q Consensus 99 ~~~am~~~~k-~M~~~n~~m~l~ki~~~M~----ef~~q~e~~~~~--~e~m~d~~~~~~~~-~~~eeE~d~lv~qvldE 170 (237)
.-..++.+.. .+-...+.-++|++..+=. .|-++|...-+- .-.++.-+=.-+.. .-+++.++..+..|+.|
T Consensus 81 ~p~~l~eAi~siiyAa~r~~elpEL~~vr~~l~~kyG~~f~~~a~~~~~~~Vn~~iv~kLs~~~p~~~~v~~~L~eIA~e 160 (165)
T PF03398_consen 81 CPPELKEAISSIIYAAPRCGELPELQEVRKQLAEKYGKEFVEAAMENRDNGVNPRIVEKLSVKPPSEELVEKYLKEIAKE 160 (165)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHCCC-HHHHHHHHTTTTTTS-HHHHHHCS-S---CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHhCHHHHHHHHHhcCCCcCHHHHHHcCCCCcCHHHHHHHHHHHHHH
Confidence 3333333333 3333334347777655433 345555322111 01111111111111 11356788888888888
Q ss_pred hchh
Q psy13382 171 LGLQ 174 (237)
Q Consensus 171 ~g~e 174 (237)
+|++
T Consensus 161 ~~i~ 164 (165)
T PF03398_consen 161 YGIP 164 (165)
T ss_dssp CT-S
T ss_pred cCCC
Confidence 8874
No 26
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=95.64 E-value=1.4 Score=38.55 Aligned_cols=123 Identities=16% Similarity=0.273 Sum_probs=75.6
Q ss_pred CChHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q psy13382 9 ITPEEMLRKNQRALNK--------------AMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAK 74 (237)
Q Consensus 9 ~tpke~~r~~~r~Lr~--------------~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~ 74 (237)
.+|+..+....+.+.. ..+.++|+..++.....+++.+.+.|+.+|+.+-|+ .++..+..+.
T Consensus 23 EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr----~al~~~~~le 98 (225)
T COG1842 23 EDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAR----EALEEKQSLE 98 (225)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH----HHHHHHHHHH
Confidence 4787665554444333 567889999999999999999999999999976544 4443333222
Q ss_pred H---------------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q psy13382 75 K---------------FMMMKANIQAVSLKIQTLRSQNAMA---EAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIM 136 (237)
Q Consensus 75 ~---------------l~~~~aql~sv~~~lq~a~s~~~~~---~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~ 136 (237)
+ ...++.++..+..+|....+-..+. .+...+...|..+...++. ...|..|++.-++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~---~sa~~~fer~e~ki 175 (225)
T COG1842 99 DLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS---SSAMAAFERMEEKI 175 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHH
Confidence 2 3345555555555555554444444 4455555555555566666 55555555554444
Q ss_pred hh
Q psy13382 137 DM 138 (237)
Q Consensus 137 ~~ 138 (237)
..
T Consensus 176 ee 177 (225)
T COG1842 176 EE 177 (225)
T ss_pred HH
Confidence 43
No 27
>KOG1655|consensus
Probab=90.70 E-value=10 Score=32.60 Aligned_cols=150 Identities=15% Similarity=0.260 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 21 ALNKAMRDLDREKQHMEQQEKKLIADIKKMAK---EGQMESV-KIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQ 96 (237)
Q Consensus 21 ~Lr~~~R~Lere~~kle~eekk~~~~iKkaak---kg~~~~a-ki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~a~s~ 96 (237)
.|.-++-.++.-...++..-.+|..++.+.-. +=...-+ -.+-+.++|.=|++.-|..++-+|+.-++.+..+.-+
T Consensus 16 sL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t 95 (218)
T KOG1655|consen 16 SLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFT 95 (218)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 35667778888888888888888888876632 2211112 2233345555567777888888999888888777766
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHHHHHHHHhc
Q psy13382 97 NAMAEAMKGCSRAMQNMNRQMNLPQ----IQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELG 172 (237)
Q Consensus 97 ~~~~~am~~~~k~M~~~n~~m~l~k----i~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~qvldE~g 172 (237)
.+-.+.-..+..+|+..|+.|+-.- |++ +++++.+|+++=....=|.++++ ..-..++-+.++|. --|+-+|
T Consensus 96 ~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~-IedlQDem~Dlmd~a~EiQE~Lg--r~y~~peide~dL~-aELdaL~ 171 (218)
T KOG1655|consen 96 AESLKDTQATVAAMKDTNKEMKKQYKKVNIDK-IEDLQDEMEDLMDQADEIQEVLG--RNYNTPDIDEADLD-AELDALG 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHHHHHHHHHHHh--hccCCCCcCHHHHH-HHHHHHH
Confidence 6655555566778888888776543 444 46666676665555555555555 23456664444433 3344444
Q ss_pred hh
Q psy13382 173 LQ 174 (237)
Q Consensus 173 ~e 174 (237)
-+
T Consensus 172 ~E 173 (218)
T KOG1655|consen 172 QE 173 (218)
T ss_pred hH
Confidence 33
No 28
>KOG2911|consensus
Probab=88.35 E-value=18 Score=34.56 Aligned_cols=151 Identities=19% Similarity=0.193 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 20 RALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQ---MESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQ 96 (237)
Q Consensus 20 r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~---~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~a~s~ 96 (237)
..+.-.+-.|-+-+.+|.++-..+.++|+++-++=. .++-|..|...+|.|+-.++ -..++.+...+|++.-++
T Consensus 229 t~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK---~~er~~~~l~~l~~vl~~ 305 (439)
T KOG2911|consen 229 TEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEK---DLERKVSSLNNLETVLSQ 305 (439)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHH
Confidence 456777888889999999999999999998755332 34567777778877766554 334455555566777777
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhh--hhhccCcc--ccHHHHHHHHHHHHHHhc
Q psy13382 97 NAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDA--MDDAMDAD--EDEDETNAVVTQVLDELG 172 (237)
Q Consensus 97 ~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~--~~~~~~~~--~~eeE~d~lv~qvldE~g 172 (237)
...+..=+-+-.+++.-+..++.-..+ +-.-++--+-++.+.+.++.. +++++... ...+.-|+.|.+-|+++-
T Consensus 306 Id~s~~nkvvl~AyksGs~alK~il~~--~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de~lEkEL~~L~ 383 (439)
T KOG2911|consen 306 IDNSQTNKVVLQAYKSGSEALKAILAQ--GGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDEDLEKELEDLE 383 (439)
T ss_pred HHhhcccHHHHHHHHHhHHHHHHHHhc--cCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchHHHHHHHHHHH
Confidence 777766677778888877666554332 222233333333344443331 22222222 224677888999998885
Q ss_pred hhh
Q psy13382 173 LQL 175 (237)
Q Consensus 173 ~e~ 175 (237)
.|-
T Consensus 384 ~D~ 386 (439)
T KOG2911|consen 384 ADE 386 (439)
T ss_pred hcc
Confidence 444
No 29
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=86.13 E-value=4.3 Score=37.54 Aligned_cols=69 Identities=26% Similarity=0.458 Sum_probs=37.7
Q ss_pred CccccCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHH
Q psy13382 1 MEWLFGRK-ITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKE-----GQMESVKIMAKDLVRT 69 (237)
Q Consensus 1 m~~~Fg~k-~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakk-----g~~~~aki~Ak~lvr~ 69 (237)
|++|||++ ++|.|.+|..+-.|-+-.-.-++...+...+-.|.-.+||.-+-. .+.+.+-.+|.++++.
T Consensus 1 M~FlF~k~~KtP~ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~ 75 (335)
T PF08569_consen 1 MSFLFKKKPKTPAELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRS 75 (335)
T ss_dssp -----------HHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHh
Confidence 88999975 699999998866665532222455566666666777777776653 2345677888888764
No 30
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.20 E-value=12 Score=28.12 Aligned_cols=48 Identities=8% Similarity=0.233 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13382 69 TRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQ 116 (237)
Q Consensus 69 ~rk~~~~l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~ 116 (237)
+++...||-+...|+.+|..-++.-.-...+...+..+..++..++..
T Consensus 8 kkkl~~RlrRi~GQv~gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~~~ 55 (89)
T COG1937 8 KKKLLNRLRRIEGQVRGIERMLEEDRDCIDVLQQIAAVRGALNGLMRE 55 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888999999999999998888899998888888888887543
No 31
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=78.84 E-value=23 Score=25.98 Aligned_cols=48 Identities=6% Similarity=0.250 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13382 70 RKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQM 117 (237)
Q Consensus 70 rk~~~~l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m 117 (237)
++-..||.+...|+.+|..-+..-.....+...+..+-.+|..+...+
T Consensus 5 ~~ll~RL~rIeGQv~gI~~Miee~~~C~dIl~Qi~Av~~Al~~~~~~v 52 (85)
T PF02583_consen 5 KDLLNRLKRIEGQVRGIERMIEEDRDCEDILQQIAAVRSALDKVGKLV 52 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTE-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567889999999999888888888999999998888888876443
No 32
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=76.21 E-value=28 Score=26.04 Aligned_cols=49 Identities=10% Similarity=0.185 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13382 69 TRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQM 117 (237)
Q Consensus 69 ~rk~~~~l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m 117 (237)
+++-..||-+...|+.+|..-+..-.....+...+..+-.++..+...+
T Consensus 8 k~~ll~RL~RIeGQv~gI~~Miee~~~C~dIl~Ql~Avr~Al~~~~~~v 56 (90)
T PRK15039 8 KQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAAIRGAVNGLMREV 56 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677889999999999888887888888888888888777775443
No 33
>KOG2910|consensus
Probab=74.78 E-value=54 Score=28.12 Aligned_cols=88 Identities=22% Similarity=0.331 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q psy13382 28 DLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRT-RKYAKKFM--------MMKANIQAVSLKIQTLRSQNA 98 (237)
Q Consensus 28 ~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~-rk~~~~l~--------~~~aql~sv~~~lq~a~s~~~ 98 (237)
+-||-|..+..+.-++..=.|+..+ ..+.=|.+|++|||. ||....|+ .+-.|.+.--..|..+.+...
T Consensus 13 d~DrAIL~lK~QRdkl~qyqkR~e~--~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiE 90 (209)
T KOG2910|consen 13 DQDRAILSLKTQRDKLKQYQKRLEK--QLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIE 90 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445444444444444444333 345568899999995 44333322 233334444445667777788
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q psy13382 99 MAEAMKGCSRAMQNMNRQM 117 (237)
Q Consensus 99 ~~~am~~~~k~M~~~n~~m 117 (237)
.+.--+.+..+++.-|..+
T Consensus 91 ft~vqk~V~~gLk~GN~~l 109 (209)
T KOG2910|consen 91 FTQVQKKVMEGLKQGNEAL 109 (209)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8877788888888877553
No 34
>PRK11352 regulator protein FrmR; Provisional
Probab=71.16 E-value=41 Score=25.15 Aligned_cols=47 Identities=11% Similarity=0.166 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13382 69 TRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNR 115 (237)
Q Consensus 69 ~rk~~~~l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~ 115 (237)
+++-..||-+...|+.+|..-|..-.....+...+..+..++..+..
T Consensus 8 k~~ll~RL~Ri~GQv~gi~~Mie~~~~C~dil~Ql~Avr~Al~~~~~ 54 (91)
T PRK11352 8 KKKVLTRVRRIRGQIDALERSLEGDAECRAILQQIAAVRGAANGLMA 54 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455778899999999999999888888888888888888877753
No 35
>PRK09720 cybC cytochrome b562; Provisional
Probab=68.76 E-value=34 Score=26.19 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=26.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 47 IKKMAKEGQMESVKIMAKDLVRTRKYAKKFM 77 (237)
Q Consensus 47 iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~ 77 (237)
....+..|+.+.||..|+++..+|+++.+-|
T Consensus 69 A~~La~~GkL~eAK~~a~~l~~~Rn~yHkky 99 (100)
T PRK09720 69 ALKLANEGKVKEAQAAAEQLKTTRNSYHKKY 99 (100)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556789999999999999999999987654
No 36
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=67.69 E-value=68 Score=26.36 Aligned_cols=46 Identities=15% Similarity=0.320 Sum_probs=22.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 4 LFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKM 50 (237)
Q Consensus 4 ~Fg~k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKka 50 (237)
+|.++| -...+.+=+..|.....+.++.....+.....++.++..+
T Consensus 38 ~fl~kp-I~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a 83 (174)
T PRK07352 38 YFGRGF-LGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQA 83 (174)
T ss_pred HHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344423 3444444444555555555555555555555555555444
No 37
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=59.97 E-value=1e+02 Score=25.64 Aligned_cols=48 Identities=13% Similarity=0.334 Sum_probs=28.5
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 4 LFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAK 52 (237)
Q Consensus 4 ~Fg~k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaak 52 (237)
+|+++ +-...+.+=+..+.....+.++.....+.....++.++..+-+
T Consensus 43 ~fl~k-PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ 90 (184)
T CHL00019 43 YFGKG-VLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAEL 90 (184)
T ss_pred HHhHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34442 2455566666666666666666666666666666666665543
No 38
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=59.26 E-value=27 Score=26.60 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 45 ADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFM 77 (237)
Q Consensus 45 ~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~ 77 (237)
..++.++..|+.+.||..++.+--.|+.+.+.+
T Consensus 70 d~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk~ 102 (103)
T PF07361_consen 70 DKAEALAEAGKLDEAKAALKKLDDLRKEYHKKF 102 (103)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhHhc
Confidence 346778899999999999999999999987765
No 39
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=59.14 E-value=57 Score=22.54 Aligned_cols=62 Identities=18% Similarity=0.355 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 28 DLDREKQHMEQQEKKLIADIKKMAKE-GQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQ 91 (237)
Q Consensus 28 ~Lere~~kle~eekk~~~~iKkaakk-g~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq 91 (237)
+++.++.+|+++..++...|...-++ +|..-+.---.++|. +...++-.+..++..+...|.
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve--~er~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVE--KEREKLEELEEELEKLEEALE 63 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888877776553 333322222233443 233445555556655555544
No 40
>PRK15058 cytochrome b562; Provisional
Probab=57.43 E-value=63 Score=25.85 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=26.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 47 IKKMAKEGQMESVKIMAKDLVRTRKYAKKFM 77 (237)
Q Consensus 47 iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~ 77 (237)
+...+.+|+.+.||.-++++...|++|.+-|
T Consensus 97 a~~la~~GkL~eAK~~a~~l~~lR~eYHkky 127 (128)
T PRK15058 97 ALKLANEGKVKEAQAAAEQLKTTRNAYHKKY 127 (128)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566789999999999999999999987644
No 41
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=55.05 E-value=1.3e+02 Score=25.57 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 12 EEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKM 50 (237)
Q Consensus 12 ke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKka 50 (237)
...+.+=+..+.....+.++.....+.....++.++..+
T Consensus 74 ~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A 112 (205)
T PRK06231 74 QRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENA 112 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555444544444444444444
No 42
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=51.58 E-value=2.3e+02 Score=27.19 Aligned_cols=132 Identities=8% Similarity=0.133 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy13382 11 PEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAK-------EGQMESVKIMAKDLVRTRKYAKKFM-MMKAN 82 (237)
Q Consensus 11 pke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaak-------kg~~~~aki~Ak~lvr~rk~~~~l~-~~~aq 82 (237)
-...+.+=+..|.....+.+.-..+++....+++..+..+-. ....++-+++..-+-..+++..++. ....+
T Consensus 26 i~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~ 105 (445)
T PRK13428 26 VRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQ 105 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555544444444444332 2222222222222223333333322 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhhHHHHHhh
Q psy13382 83 IQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMN-LPQIQRILQEFEKQSEIMDMKEEMMND 145 (237)
Q Consensus 83 l~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~-l~ki~~~M~ef~~q~e~~~~~~e~m~d 145 (237)
+..-..+........-..-++..+.++++. .++ ...-.+++++|-++...+.-....++.
T Consensus 106 Ie~ek~~a~~elr~ei~~lAv~~A~kil~~---~l~d~~~~~~lId~~i~~l~~~~~~~~~~~~ 166 (445)
T PRK13428 106 VQLLRAQLTRQLRLELGHESVRQAGELVRN---HVADPAQQSATVDRFLDELDAMAPSTADVDY 166 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHhhccCCCchhhcC
Confidence 333322222222222233345555555543 343 444468888888888776554444433
No 43
>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]
Probab=50.68 E-value=36 Score=25.90 Aligned_cols=31 Identities=35% Similarity=0.469 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Q psy13382 45 ADIKKMAKEGQMESVKIMAKDLVRTRKYAKK 75 (237)
Q Consensus 45 ~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~ 75 (237)
.++.+.+..||.+.||.-|+.+.-+|+.|.+
T Consensus 67 D~a~klaqeGnl~eAKaaak~l~d~Rn~YHk 97 (100)
T COG3783 67 DKADKLAQEGNLDEAKAAAKTLKDTRNTYHK 97 (100)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 4577788899999999999999999998755
No 44
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=50.06 E-value=1.1e+02 Score=24.53 Aligned_cols=31 Identities=35% Similarity=0.549 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 18 NQRALNKAMRDLDREKQHMEQQEKKLIADIK 48 (237)
Q Consensus 18 ~~r~Lr~~~R~Lere~~kle~eekk~~~~iK 48 (237)
....+...+..+|++...|+.+.++...+++
T Consensus 21 l~~~l~~~i~~~d~el~QLefq~kr~~~e~~ 51 (131)
T PF11068_consen 21 LLQELQEQIQQLDQELQQLEFQGKRMIKEIK 51 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777888888888888888888777655
No 45
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=50.04 E-value=42 Score=22.00 Aligned_cols=36 Identities=17% Similarity=0.488 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 10 TPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIA 45 (237)
Q Consensus 10 tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~ 45 (237)
-.|+.+++.=-.|-..+..|+.+|..|++....|..
T Consensus 5 EAkelLqe~~d~IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 5 EAKELLQEHYDNIEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp ----------THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888999999999888876655543
No 46
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=49.23 E-value=1.5e+02 Score=24.35 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 12 EEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKM 50 (237)
Q Consensus 12 ke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKka 50 (237)
...+.+=+..+.....+.+......+.....++.++..+
T Consensus 42 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a 80 (173)
T PRK13460 42 LKALDERASGVQNDINKASELRLEAEALLKDYEARLNSA 80 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444334444444444444444444444444444333
No 47
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=48.43 E-value=1.8e+02 Score=25.25 Aligned_cols=159 Identities=13% Similarity=0.201 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy13382 11 PEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAK-------EGQMESVKIMAKDLVRTRKYAKKFMM-MKAN 82 (237)
Q Consensus 11 pke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaak-------kg~~~~aki~Ak~lvr~rk~~~~l~~-~~aq 82 (237)
-...+.+=+..+.....+.++....++.....++.++..+-+ ....++.++...-+-.-|.+..++.. ....
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ 109 (246)
T TIGR03321 30 ILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEA 109 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555554422 11122222222222223333333222 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHH-HHHhhhhhh-------ccCcc
Q psy13382 83 IQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKE-EMMNDAMDD-------AMDAD 154 (237)
Q Consensus 83 l~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~-e~m~d~~~~-------~~~~~ 154 (237)
+..=..+........-+.-++..+.+.++ +.+|...-..++++|-..+..+.-.. ..+-+.... .+...
T Consensus 110 ie~E~~~a~~~l~~ei~~la~~~A~kil~---~~~d~~~~~~lid~~i~~l~~l~~~~~~~l~~~~~~~~~~~~v~sa~~ 186 (246)
T TIGR03321 110 LRREQAALSDELRRRTGAEVFAIARKVLT---DLADTDLEERMVDVFVQRLRTLDPDEKAALAEALADSGNPVLVRSAFE 186 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhCCCCceEEEecCC
Confidence 22221111112222233345555666664 45688888899999998887775442 223222111 11122
Q ss_pred ccHHHHHHHHHHHHHHhc
Q psy13382 155 EDEDETNAVVTQVLDELG 172 (237)
Q Consensus 155 ~~eeE~d~lv~qvldE~g 172 (237)
-++++.+.+...+..-.|
T Consensus 187 l~~~~~~~i~~~l~~~~~ 204 (246)
T TIGR03321 187 LPEEQREQIRDTIRETLG 204 (246)
T ss_pred CCHHHHHHHHHHHHHHHC
Confidence 245566666666555554
No 48
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=46.29 E-value=1.4e+02 Score=23.42 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 11 PEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKM 50 (237)
Q Consensus 11 pke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKka 50 (237)
....+.+=+..+.....+.+......+.....++..+..+
T Consensus 20 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A 59 (147)
T TIGR01144 20 LAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEA 59 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555566666666555555555555555555444
No 49
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=42.07 E-value=1.8e+02 Score=23.42 Aligned_cols=40 Identities=15% Similarity=0.419 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 11 PEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKM 50 (237)
Q Consensus 11 pke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKka 50 (237)
....+.+=+..+.....+.+.....++.....++..+..+
T Consensus 33 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A 72 (164)
T PRK14473 33 VLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKA 72 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666666665566665555555555554
No 50
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=40.97 E-value=2e+02 Score=23.54 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 11 PEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMA 51 (237)
Q Consensus 11 pke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaa 51 (237)
-...+.+=+..+.....+.++.....+.....++.++..+-
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~ 83 (175)
T PRK14472 43 ILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKAD 83 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555666666666665666655555555555543
No 51
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=40.96 E-value=92 Score=31.15 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhchhhhh
Q psy13382 159 ETNAVVTQVLDELGLQLGD 177 (237)
Q Consensus 159 E~d~lv~qvldE~g~e~~~ 177 (237)
=.+++|-+||||+--|.+.
T Consensus 588 lteeev~kilde~vkd~s~ 606 (727)
T PF05642_consen 588 LTEEEVKKILDELVKDPSD 606 (727)
T ss_pred cCHHHHHHHHHHHhcCcch
Confidence 3566788888888666554
No 52
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=40.69 E-value=1.9e+02 Score=23.20 Aligned_cols=41 Identities=10% Similarity=0.236 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 11 PEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMA 51 (237)
Q Consensus 11 pke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaa 51 (237)
-...+.+=+..+.....+.+......+.....++.++..+-
T Consensus 30 i~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~ 70 (159)
T PRK13461 30 IKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAK 70 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556665556666666666666666666666666555553
No 53
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=39.31 E-value=3.4e+02 Score=25.76 Aligned_cols=35 Identities=20% Similarity=0.423 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy13382 20 RALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEG 54 (237)
Q Consensus 20 r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg 54 (237)
..|...-|++..++..|..+.+++-.+|++..+.+
T Consensus 31 ~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~ 65 (425)
T PRK05431 31 LELDEERRELQTELEELQAERNALSKEIGQAKRKG 65 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44667778888888888888888888888765555
No 54
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=38.97 E-value=2.2e+02 Score=23.48 Aligned_cols=48 Identities=8% Similarity=0.086 Sum_probs=32.3
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 4 LFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMA 51 (237)
Q Consensus 4 ~Fg~k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaa 51 (237)
+|+.+|.....+.+=+..+.....+.++.....+.....++.++..+-
T Consensus 45 ~f~~~~~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~ 92 (184)
T PRK13455 45 YFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQ 92 (184)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344433336777777777888777777777777777777777766653
No 55
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=38.01 E-value=2e+02 Score=22.76 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 11 PEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAK 52 (237)
Q Consensus 11 pke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaak 52 (237)
-...+.+=+..+.....+.+......+.....++.++..+-.
T Consensus 29 i~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ 70 (156)
T PRK05759 29 IMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARA 70 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566555666666666666666666666666666655533
No 56
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=37.05 E-value=1.2e+02 Score=23.87 Aligned_cols=42 Identities=14% Similarity=0.385 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 11 PEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAK 52 (237)
Q Consensus 11 pke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaak 52 (237)
..+.+++-.-.|...++.|+|+..+++.+-++++..|.++..
T Consensus 71 ~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 71 AVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555556666666666666666666666666666554
No 57
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=35.90 E-value=1.6e+02 Score=24.68 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 13 EMLRKNQRALNKAMRDLDREKQHMEQQEKKLIA 45 (237)
Q Consensus 13 e~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~ 45 (237)
.+++...++|..++++|++++.++|.-..+.+.
T Consensus 116 ~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~ 148 (171)
T PF04799_consen 116 QQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKT 148 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666555444433
No 58
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=35.19 E-value=2.5e+02 Score=27.01 Aligned_cols=26 Identities=8% Similarity=0.092 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 68 RTRKYAKKFMMMKANIQAVSLKIQTL 93 (237)
Q Consensus 68 r~rk~~~~l~~~~aql~sv~~~lq~a 93 (237)
|.++|+.+|..+-++|++....|+.+
T Consensus 435 rl~~qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 435 RYKAQFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777777777777766665543
No 59
>PRK06798 fliD flagellar capping protein; Validated
Probab=35.11 E-value=2.1e+02 Score=27.42 Aligned_cols=26 Identities=4% Similarity=0.180 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 22 LNKAMRDLDREKQHMEQQEKKLIADI 47 (237)
Q Consensus 22 Lr~~~R~Lere~~kle~eekk~~~~i 47 (237)
|....+.|+.++.+++.+...++.++
T Consensus 377 i~~r~~~l~~~i~~l~~~~~~~e~rl 402 (440)
T PRK06798 377 IGERSKSIDNRVSKLDLKITDIDTQN 402 (440)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555554444443
No 60
>KOG2027|consensus
Probab=34.98 E-value=4e+02 Score=25.27 Aligned_cols=138 Identities=14% Similarity=0.261 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy13382 34 QHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCS-RAMQN 112 (237)
Q Consensus 34 ~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~-k~M~~ 112 (237)
+|=+...++++.+|-..++.|+-+.|++-+..+||-.+.+.=|.-+--=.+-+..++.....+...-.-++.+. ..|=+
T Consensus 11 nKk~a~~kq~RrdIA~lL~sg~~~~A~~RvE~li~ee~~~~a~e~le~fCelll~R~~~i~~~~~cp~~l~EAVsSlifA 90 (388)
T KOG2027|consen 11 NKKEALAKQLRRDIADLLKSGQDERARIRVEHLIREENLLEAYEILELFCELLLARLSLIEKQKECPDDLKEAVSSLIFA 90 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcccCCHHHHHHHHHHHHH
Confidence 44455677888899999999999999999999999998887766666666667777766666655544444333 34444
Q ss_pred HHhcCCHHHHHHHHHHHH----HHHHHhhhH--------HHHHhhhhhhccCccccHHHHHHHHHHHHHHhchhh
Q psy13382 113 MNRQMNLPQIQRILQEFE----KQSEIMDMK--------EEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQL 175 (237)
Q Consensus 113 ~n~~m~l~ki~~~M~ef~----~q~e~~~~~--------~e~m~d~~~~~~~~~~~eeE~d~lv~qvldE~g~e~ 175 (237)
.-+.=+++++..+=+-|- ++|...-+- ..+|... . ...-+.+-+..++..|+.|+++.+
T Consensus 91 A~R~~EvpEL~~i~~~f~~kYGk~f~~~a~~l~p~~~Vn~kiiekL-s---~~~P~~e~k~k~lkEIA~ey~v~~ 161 (388)
T KOG2027|consen 91 APRLSEVPELREIRDLFVKKYGKEFVKAAIELRPGNGVNRKIIEKL-S---VEAPPKELKEKYLKEIAKEYNVNW 161 (388)
T ss_pred hccccccHHHHHHHHHHHHHHhHHHHHHHHhccccCCcCHHHHHHh-c---CCCCcHHHHHHHHHHHHHHhCCCc
Confidence 455557888877665544 444433221 1122221 1 111123446888888888888765
No 61
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=34.03 E-value=3.7e+02 Score=24.56 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 11 PEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKM 50 (237)
Q Consensus 11 pke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKka 50 (237)
...++......|......|.+....|+....+...-++..
T Consensus 96 v~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L 135 (333)
T PF05816_consen 96 VQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQEL 135 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777777766665555544
No 62
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=33.55 E-value=1.2e+02 Score=22.82 Aligned_cols=41 Identities=15% Similarity=0.379 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 11 PEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMA 51 (237)
Q Consensus 11 pke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaa 51 (237)
..+.+.+..-.|...++.|+.++..++++-..++.+|+.+.
T Consensus 64 a~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 64 ARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666777777777777777777777777776653
No 63
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.44 E-value=1.6e+02 Score=20.24 Aligned_cols=43 Identities=16% Similarity=0.444 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy13382 20 RALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAK 64 (237)
Q Consensus 20 r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak 64 (237)
..++..+.+|++++..+..+-..++.+++..- ++.+...-+|+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~--~~~~~ie~~AR 62 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLK--NDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHH
Confidence 45667777888888888888888887777652 36665555555
No 64
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=32.81 E-value=83 Score=23.89 Aligned_cols=33 Identities=18% Similarity=0.382 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q psy13382 103 MKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIM 136 (237)
Q Consensus 103 m~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~ 136 (237)
+...+..|..+ ..++.+.+..++++|.......
T Consensus 35 i~~i~~~ma~l-~~v~~~~~~~Vl~EF~~~~~~~ 67 (108)
T PF14842_consen 35 IERISREMAKL-GSVSPEEVEEVLEEFYDEIRAQ 67 (108)
T ss_dssp HHHHHHHHHT------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHc
Confidence 45555555555 5678899999999998855443
No 65
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.72 E-value=78 Score=21.48 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 20 RALNKAMRDLDREKQHMEQQEKK 42 (237)
Q Consensus 20 r~Lr~~~R~Lere~~kle~eekk 42 (237)
..++++.|.+.+++++++++-.+
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666666543
No 66
>PRK09343 prefoldin subunit beta; Provisional
Probab=30.73 E-value=1.4e+02 Score=23.20 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy13382 15 LRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQ 55 (237)
Q Consensus 15 ~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~ 55 (237)
+.+-.--|...+..|+++...+++.-+.+...++.++.++.
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~ 116 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYY 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444445666666777777777777777777777776654
No 67
>PLN03086 PRLI-interacting factor K; Provisional
Probab=29.94 E-value=4.4e+02 Score=26.38 Aligned_cols=65 Identities=11% Similarity=0.187 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 29 LDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAM 99 (237)
Q Consensus 29 Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~a~s~~~~ 99 (237)
|.+-+.|+++|.++-+.+.|.-+.+- |..-.++.+.|-.++...+. -+|+++..++.....+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 69 (567)
T PLN03086 5 LRRAREKLEREQRERKQRAKLKLERE-----RKAKEEAAKQREAIEAAQRS-RRLDAIEAQIKADQQMQES 69 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555554433211 11112233444444444443 3788887777654444443
No 68
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=27.32 E-value=87 Score=17.54 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy13382 20 RALNKAMRDLDREKQHME 37 (237)
Q Consensus 20 r~Lr~~~R~Lere~~kle 37 (237)
..+|..+++|+++...|-
T Consensus 4 ~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 4 NRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 356777888888777664
No 69
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=27.17 E-value=1.8e+02 Score=21.65 Aligned_cols=37 Identities=11% Similarity=0.255 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCHHHHHH
Q psy13382 25 AMRDLDREKQHMEQQEKKLIADIKKM-AKEGQMESVKI 61 (237)
Q Consensus 25 ~~R~Lere~~kle~eekk~~~~iKka-akkg~~~~aki 61 (237)
....|..+...+..|....+.++|.+ +++.|.+.++-
T Consensus 31 ~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~~~ 68 (87)
T PF10883_consen 31 QNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENTRR 68 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc
Confidence 34555555555555555555556544 33444444443
No 70
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=26.67 E-value=3.9e+02 Score=22.50 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 18 NQRALNKAMRDLDREKQHMEQQEK 41 (237)
Q Consensus 18 ~~r~Lr~~~R~Lere~~kle~eek 41 (237)
-...|+..+|+++..+.++.+.-.
T Consensus 24 P~~~l~q~ird~e~~l~~a~~~~a 47 (221)
T PF04012_consen 24 PEKMLEQAIRDMEEQLRKARQALA 47 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444433
No 71
>PRK07737 fliD flagellar capping protein; Validated
Probab=26.54 E-value=4.3e+02 Score=25.75 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 28 DLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTL 93 (237)
Q Consensus 28 ~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~a 93 (237)
.|.+++..++++...++.++...-+ |.++|+..|..+-++|++.+.-|..+
T Consensus 445 ~l~~~i~~l~~~i~~~~~rl~~~e~---------------ry~~qf~ale~~~s~mnsq~s~L~~~ 495 (501)
T PRK07737 445 AIGKDLNQIETQIDRFQDRLKQIED---------------RYYKKFSAMEKAIQKANEQSMYLMNA 495 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555554311 44677766767767776665554443
No 72
>PRK04863 mukB cell division protein MukB; Provisional
Probab=25.98 E-value=9.8e+02 Score=26.94 Aligned_cols=129 Identities=12% Similarity=0.216 Sum_probs=83.0
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCC--HHHHHHHHHHHHHH----
Q psy13382 4 LFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAK--------EGQ--MESVKIMAKDLVRT---- 69 (237)
Q Consensus 4 ~Fg~k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaak--------kg~--~~~aki~Ak~lvr~---- 69 (237)
|+|..+=+.+.+..+.........++..++..++.+....+..++..-+ .|. ...|.-.|++++|.
T Consensus 429 ~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~ 508 (1486)
T PRK04863 429 LCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQ 508 (1486)
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHH
Confidence 6675443455577888888888887777777777777777776665543 343 34566677777763
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhh
Q psy13382 70 RKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMN-LPQIQRILQEFEKQSEIMDM 138 (237)
Q Consensus 70 rk~~~~l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~-l~ki~~~M~ef~~q~e~~~~ 138 (237)
|....++-.+..++..+..+++.......+.....+ ......+ .+.+.....+.+.+.+.++.
T Consensus 509 ~~~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (1486)
T PRK04863 509 RHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCK------RLGKNLDDEDELEQLQEELEARLESLSE 572 (1486)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 556667777888888888887777776666655543 2233333 55566665555555544443
No 73
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=25.29 E-value=72 Score=19.12 Aligned_cols=16 Identities=38% Similarity=0.617 Sum_probs=13.3
Q ss_pred cHHHHHHHHHHHHHHh
Q psy13382 156 DEDETNAVVTQVLDEL 171 (237)
Q Consensus 156 ~eeE~d~lv~qvldE~ 171 (237)
+.+|||..+++|.+++
T Consensus 19 ~~~eVD~fLd~v~~~~ 34 (34)
T TIGR03544 19 DAAEVDAFLDRVADDL 34 (34)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 5689999999998864
No 74
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=24.99 E-value=3.9e+02 Score=21.97 Aligned_cols=69 Identities=10% Similarity=0.196 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 16 RKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQT 92 (237)
Q Consensus 16 r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~ 92 (237)
+=|+.....-....++++.+|-+ ++.-.|..|++.+.++++.- -+.|....++..|..+|..+.++|.+
T Consensus 69 kYWK~eFe~Y~~~a~~Em~KLi~----yk~~aKsyAkkKD~Ea~~L~----~KLkeEq~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 69 KYWKEEFESYHEKAEKEMEKLIK----YKQLAKSYAKKKDAEAMRLA----EKLKEEQEKVAEMERHVTELASQMAS 137 (152)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34655554444445555554432 45566667777777766532 23455666777777777776666544
No 75
>PF08165 FerA: FerA (NUC095) domain; InterPro: IPR012560 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This is central domain A in proteins of the Ferlin family [].; GO: 0016021 integral to membrane
Probab=24.85 E-value=2.1e+02 Score=19.92 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=18.7
Q ss_pred ccHHHHHHHHHHHHHHhchhhhhhc
Q psy13382 155 EDEDETNAVVTQVLDELGLQLGDQL 179 (237)
Q Consensus 155 ~~eeE~d~lv~qvldE~g~e~~~~L 179 (237)
.+++++..+.-+++|++=-|.+..|
T Consensus 7 ~~~~~l~~~~~~lLdqlIeD~~~pL 31 (66)
T PF08165_consen 7 DSEEELAELWLKLLDQLIEDCSKPL 31 (66)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4678899999999999866655543
No 76
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=24.56 E-value=5.3e+02 Score=23.32 Aligned_cols=81 Identities=15% Similarity=0.310 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhh-hccCccccHHHHHHHHHHHHHHhch
Q psy13382 95 SQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMD-DAMDADEDEDETNAVVTQVLDELGL 173 (237)
Q Consensus 95 s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~-~~~~~~~~eeE~d~lv~qvldE~g~ 173 (237)
....++..+......+..+...++ .+|....+++-.-..+..-+..-|...-. ...+..+..|+-|.+|+++..-+++
T Consensus 135 ~a~~l~~~~n~~~~~L~~~~~~~~-~~i~~~V~~iN~ll~~Ia~lN~~I~~~~~~~g~~~n~L~DqRD~ll~~LS~~v~i 213 (322)
T TIGR02492 135 SAQALANSFNQTSNELQDLRKGIN-AEIKSAVTEINSLLKQIASLNKEIQQVEAKSGQDANDLLDQRDLLLKELSQLIGI 213 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHhHHHHHHHHHHHHhHcCe
Confidence 344444555555555555444433 23333333333333333333332322111 1123345678899999999999998
Q ss_pred hhh
Q psy13382 174 QLG 176 (237)
Q Consensus 174 e~~ 176 (237)
.+.
T Consensus 214 ~v~ 216 (322)
T TIGR02492 214 SVS 216 (322)
T ss_pred EEE
Confidence 774
No 77
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=24.53 E-value=3e+02 Score=20.43 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 21 ALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSL 88 (237)
Q Consensus 21 ~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~ 88 (237)
.|+..+..++.++.+++...+.++.+.|+..++ ..+....+|+.--+-+.++.-
T Consensus 5 ~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~--------------eRK~RtHRLi~rGa~lEsi~~ 58 (86)
T PF12958_consen 5 ELQAEIEKAEKKLEQAEHKIKQLENRKKKLEKK--------------ERKERTHRLIERGAILESIFP 58 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhhHHHHHHhh
Confidence 466667778888888888888888888887761 122233456666666666643
No 78
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=23.03 E-value=4.8e+02 Score=22.74 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHHHHHhchhhhh
Q psy13382 156 DEDETNAVVTQVLDELGLQLGD 177 (237)
Q Consensus 156 ~eeE~d~lv~qvldE~g~e~~~ 177 (237)
.++++..+|++++.+++|.+++
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~ 194 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSD 194 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCH
Confidence 5789999999999999998755
No 79
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=23.01 E-value=2.7e+02 Score=21.77 Aligned_cols=36 Identities=28% Similarity=0.301 Sum_probs=17.2
Q ss_pred ccCCCCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 4 LFGRKITPEEMLRK---NQRALNKAMRDLDREKQHMEQQE 40 (237)
Q Consensus 4 ~Fg~k~tpke~~r~---~~r~Lr~~~R~Lere~~kle~ee 40 (237)
+|-.+..| |.+++ |-+......|+|..++..|--++
T Consensus 3 iftlkEa~-e~~~el~P~l~d~~~~~r~~~n~~e~L~~qe 41 (123)
T COG4911 3 IFTLKEAP-ETARELLPWLRDRLIQLRKIKNEIELLLVQE 41 (123)
T ss_pred eeehhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66654333 44433 44555555555555544444333
No 80
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=22.19 E-value=6.8e+02 Score=23.74 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 26 MRDLDREKQHMEQQEKKLIADIKKMAK 52 (237)
Q Consensus 26 ~R~Lere~~kle~eekk~~~~iKkaak 52 (237)
...|.+++..+..+-.+++..+.+.-+
T Consensus 336 ~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 336 LEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444444444444444444444433
No 81
>PRK12765 flagellar capping protein; Provisional
Probab=21.80 E-value=6.1e+02 Score=25.35 Aligned_cols=57 Identities=11% Similarity=0.078 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 22 LNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTL 93 (237)
Q Consensus 22 Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~a 93 (237)
|......|++++++|.++...+...|-.. .-|.|+|...|-.+-++|++....|..+
T Consensus 530 l~~~~~~l~~~~~~l~~~~~~~~~rl~~~---------------~~r~~~qf~alD~~i~~l~~t~s~l~~~ 586 (595)
T PRK12765 530 LTKYDESLTNEIKSLTTSKESTQELIDTK---------------YETMANKWLQYDSIIAKLEQQFSTLKNM 586 (595)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444555666666655555554444322 1255666666666666766666555443
No 82
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=21.57 E-value=6.2e+02 Score=23.03 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 20 RALNKAMRDLDREKQHMEQQEKKLIADIKK 49 (237)
Q Consensus 20 r~Lr~~~R~Lere~~kle~eekk~~~~iKk 49 (237)
..|..+.+.+..++..++++...+..+++.
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555544
No 83
>PRK08724 fliD flagellar capping protein; Validated
Probab=21.49 E-value=6.3e+02 Score=25.85 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy13382 26 MRDLDREKQHMEQQEKKLIADI 47 (237)
Q Consensus 26 ~R~Lere~~kle~eekk~~~~i 47 (237)
...|++++.+++.+...+...+
T Consensus 619 ~~sL~~~i~~l~dqi~~Le~Rl 640 (673)
T PRK08724 619 EKSLREQNYRLNDDQVALDRRM 640 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333
No 84
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=21.17 E-value=3.8e+02 Score=21.15 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 15 LRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKM 50 (237)
Q Consensus 15 ~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKka 50 (237)
-.+...+|+.....|+-.+..|+++++++..++++.
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eL 103 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEEL 103 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666788889999999999999999999988876
No 85
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.17 E-value=2.4e+02 Score=21.12 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=28.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhh
Q psy13382 116 QMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMD 148 (237)
Q Consensus 116 ~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~ 148 (237)
++|+++...|-.+++..|+..|+..+.+-.-++
T Consensus 2 SLn~~Q~~~T~~ELq~nf~~~~ls~~~ia~dL~ 34 (89)
T PF10078_consen 2 SLNPEQRRATRQELQANFELSGLSLEQIAADLG 34 (89)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHhC
Confidence 468899999999999999999998888777665
No 86
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=20.98 E-value=5.4e+02 Score=26.16 Aligned_cols=25 Identities=4% Similarity=-0.040 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 68 RTRKYAKKFMMMKANIQAVSLKIQT 92 (237)
Q Consensus 68 r~rk~~~~l~~~~aql~sv~~~lq~ 92 (237)
|.++|+..|..+-++|++.+.-|..
T Consensus 629 rl~~QFtaME~~msqmnsqss~L~~ 653 (661)
T PRK06664 629 KLKGKYLTMDQTVKKMKEQSNYLKN 653 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666665555444
No 87
>PRK09343 prefoldin subunit beta; Provisional
Probab=20.70 E-value=3.2e+02 Score=21.17 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 15 LRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMA 51 (237)
Q Consensus 15 ~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaa 51 (237)
..+++..|...+.-|+-.+..|++.+..+..+++..-
T Consensus 69 ~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q 105 (121)
T PRK09343 69 KTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQ 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566888888888888888888888888887653
No 88
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=20.63 E-value=3.8e+02 Score=23.66 Aligned_cols=48 Identities=23% Similarity=0.160 Sum_probs=36.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 4 LFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMA 51 (237)
Q Consensus 4 ~Fg~k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaa 51 (237)
||.-++...|..|...-.|++.+....+....|++..+.+..-|-++-
T Consensus 16 w~~~p~~A~E~~r~~Le~Ir~kq~~v~~~l~eLe~~~~el~~~i~~~k 63 (236)
T PF12269_consen 16 WQLSPCVAEEQNRKLLEEIRKKQQKVRNRLQELEKRFKELEAIIARAK 63 (236)
T ss_pred hcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455445567777888888888888888888888888888888777653
No 89
>KOG0150|consensus
Probab=20.10 E-value=4.8e+02 Score=24.10 Aligned_cols=51 Identities=25% Similarity=0.392 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy13382 13 EMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLV 67 (237)
Q Consensus 13 e~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lv 67 (237)
++=...+-.+.+.+++|-|...+-+++++++...+.++.. .+++.||++|-
T Consensus 31 e~GkrHke~V~Kritdi~rks~~kekeekKls~~la~mEa----aA~~syaedl~ 81 (336)
T KOG0150|consen 31 ERGKRHKENVAKRITDIHRKSLKKEKEEKKLSKELAAMEA----AASASYAEDLS 81 (336)
T ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhhHHHHHHH----HHHHHHHHhhh
Confidence 4455677779999999999999999999999888887643 46788888854
Done!