Query psy13382
Match_columns 237
No_of_seqs 186 out of 765
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 18:04:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3frt_A Charged multivesicular 100.0 5.6E-52 1.9E-56 355.9 13.0 177 7-186 4-180 (218)
2 2gd5_A Charged multivesicular 100.0 1.1E-46 3.8E-51 315.2 5.2 177 4-184 2-178 (179)
3 3eab_G CHMP1B; spastin, MIT, E 99.0 8E-12 2.8E-16 82.9 -2.5 50 159-236 1-50 (50)
4 3um3_B Charged multivesicular 98.4 1.6E-06 5.6E-11 65.7 8.5 55 116-170 2-58 (104)
5 2v6x_B DOA4-independent degrad 98.1 6.1E-07 2.1E-11 60.1 0.6 16 222-237 38-53 (54)
6 3frt_A Charged multivesicular 97.7 1.7E-05 5.9E-10 67.5 3.7 147 14-170 18-171 (218)
7 2gd5_A Charged multivesicular 97.6 1.7E-05 5.7E-10 65.5 2.2 148 21-171 11-164 (179)
8 3frr_A Uncharacterized protein 97.2 0.023 7.9E-07 47.2 15.6 166 3-175 2-179 (191)
9 4abm_A Charged multivesicular 97.1 0.016 5.4E-07 41.5 12.3 74 14-92 3-77 (79)
10 2luh_B Vacuolar protein-sortin 97.0 0.0005 1.7E-08 46.4 3.1 54 117-170 1-54 (59)
11 3ggy_A Increased sodium tolera 95.9 0.26 8.7E-06 40.9 14.0 160 13-176 7-185 (193)
12 3ggz_E Vacuolar protein-sortin 94.0 0.026 8.9E-07 32.5 1.8 16 221-236 14-29 (29)
13 2xze_Q Charged multivesicular 83.7 0.32 1.1E-05 30.1 0.8 10 227-236 31-40 (40)
14 2lxm_B Charged multivesicular 81.1 1 3.5E-05 30.0 2.5 37 133-172 1-37 (57)
15 3twe_A Alpha4H; unknown functi 79.0 0.87 3E-05 24.9 1.4 13 224-236 10-22 (27)
16 2hh7_A Hypothetical protein CS 77.8 9.6 0.00033 29.0 7.5 47 69-115 9-55 (119)
17 3um3_B Charged multivesicular 64.0 30 0.001 25.5 7.3 46 126-171 8-55 (104)
18 4adz_A CSOR; transcription, co 60.3 27 0.00093 27.1 6.7 49 68-116 50-98 (136)
19 3aai_A Copper homeostasis oper 60.0 27 0.00092 25.2 6.3 47 69-115 13-60 (94)
20 1upk_A MO25 protein; transfera 53.0 49 0.0017 29.5 8.0 66 1-69 3-77 (341)
21 1t3j_A Mitofusin 1; coiled coi 52.9 50 0.0017 24.0 6.7 35 12-46 42-76 (96)
22 2ke4_A CDC42-interacting prote 44.1 88 0.003 22.6 7.9 64 22-85 20-83 (98)
23 2p22_A Suppressor protein STP2 38.4 55 0.0019 26.3 5.5 48 3-50 35-82 (174)
24 2wt7_B Transcription factor MA 36.9 55 0.0019 23.5 4.7 42 23-71 5-46 (90)
25 1a92_A Delta antigen; leucine 35.7 84 0.0029 19.9 5.8 32 13-45 4-35 (50)
26 2l5g_B Putative uncharacterize 30.9 95 0.0032 19.1 5.1 27 24-50 9-35 (42)
27 1s94_A S-syntaxin; three helix 29.8 2E+02 0.0067 22.4 7.9 26 121-146 127-152 (180)
28 2zqm_A Prefoldin beta subunit 29.3 1.5E+02 0.005 21.2 6.3 44 10-53 70-113 (117)
29 2r6a_C DNAG primase, helicase 28.8 1.6E+02 0.0056 21.2 7.8 40 34-73 101-140 (143)
30 2z5i_A TM, general control pro 28.0 1.1E+02 0.0036 19.5 4.5 33 119-151 14-46 (52)
31 1z0k_B FYVE-finger-containing 26.3 1.6E+02 0.0053 20.1 6.8 38 39-76 28-65 (69)
32 3hjl_A Flagellar motor switch 24.4 1.3E+02 0.0045 26.4 6.1 74 104-182 40-116 (329)
33 4abm_A Charged multivesicular 24.3 1.8E+02 0.0061 20.1 8.8 29 22-50 4-32 (79)
34 1yzm_A FYVE-finger-containing 24.3 1.4E+02 0.0049 19.0 6.8 40 38-77 9-48 (51)
35 1wrd_A TOM1, target of MYB pro 23.9 1.3E+02 0.0046 21.7 5.1 37 101-137 16-56 (103)
36 3uly_B Charged multivesicular 23.1 91 0.0031 21.3 3.6 21 154-174 7-27 (69)
37 2w6b_A RHO guanine nucleotide 22.9 1.6E+02 0.0055 19.1 6.1 38 15-52 15-52 (56)
38 3mud_A DNA repair protein XRCC 21.9 2.9E+02 0.01 22.1 7.0 32 9-40 120-151 (175)
No 1
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-52 Score=355.85 Aligned_cols=177 Identities=24% Similarity=0.434 Sum_probs=140.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 7 RKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAV 86 (237)
Q Consensus 7 ~k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv 86 (237)
.++||+|++|+|+|.||+++|+|+|++++|+++|++++.+||+++|+||+++|||||+++||+|+++.+||.++++|++|
T Consensus 4 ~~~~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV 83 (218)
T 3frt_A 4 QEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSV 83 (218)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHHHH
Q psy13382 87 SLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQ 166 (237)
Q Consensus 87 ~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~q 166 (237)
+++|++++++.+|+++|++++++|+.||++||||+|+.+|++|++||+++|+++|||+|+|+++++++++++|+|++|++
T Consensus 84 ~~rlqt~~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~k 163 (218)
T 3frt_A 84 LMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDR 163 (218)
T ss_dssp HHHHHHHHHCC----CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred HHHHhchhhhhhccCCCCCC
Q psy13382 167 VLDELGLQLGDQLASIPDPA 186 (237)
Q Consensus 167 vldE~g~e~~~~L~~~P~~~ 186 (237)
||+|+| .++|..+|++.
T Consensus 164 VldEi~---~~~l~~~p~~~ 180 (218)
T 3frt_A 164 ILFEIT---AGALGKAPSKV 180 (218)
T ss_dssp HHHTC---------------
T ss_pred HHHHHh---HhHhhcCCCCC
Confidence 999998 46788888753
No 2
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=100.00 E-value=1.1e-46 Score=315.16 Aligned_cols=177 Identities=24% Similarity=0.429 Sum_probs=141.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 4 LFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANI 83 (237)
Q Consensus 4 ~Fg~k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql 83 (237)
+|++ |||+|.+|+|++.||+++|+|+|++.+|++++++++.+||+++++|++++|||||+++||+|+++.+||.++++|
T Consensus 2 ~~~~-~~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l 80 (179)
T 2gd5_A 2 AMAE-KPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHM 80 (179)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5654 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHH
Q psy13382 84 QAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAV 163 (237)
Q Consensus 84 ~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~l 163 (237)
++|+++|+++.++..++++|++++++|+.+|+.||+++|+.+|++|+++++++|+++|+|+|+|+++++++++++|+|++
T Consensus 81 ~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~ 160 (179)
T 2gd5_A 81 NSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEME 160 (179)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred HHHHHHHhchhhhhhccCCCC
Q psy13382 164 VTQVLDELGLQLGDQLASIPD 184 (237)
Q Consensus 164 v~qvldE~g~e~~~~L~~~P~ 184 (237)
|++||+|+|+ ++|+.+|+
T Consensus 161 v~kVl~E~~~---~~l~~~P~ 178 (179)
T 2gd5_A 161 IDRILFEITA---GALGKAPS 178 (179)
T ss_dssp HHHTTCCC-------------
T ss_pred HHHHHHHhhH---hhcccCCC
Confidence 9999999985 46776665
No 3
>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=99.02 E-value=8e-12 Score=82.90 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhchhhhhhccCCCCCCCCcCccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhhhc
Q psy13382 159 ETNAVVTQVLDELGLQLGDQLASIPDPASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLRR 236 (237)
Q Consensus 159 E~d~lv~qvldE~g~e~~~~L~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~L~~RL~~Lr~ 236 (237)
+||+||+||+||+|+|++..|+.+|.+.. +.+ ....++|+|.+||++||+
T Consensus 1 qVd~Lm~qVaDE~Glel~~~L~~~~~~~~--~~~--------------------------~~~~~eD~L~~RLaaLR~ 50 (50)
T 3eab_G 1 QVDMLLQEMADEAGLDLNMELPQGQTGSV--GTS--------------------------VASAEQDELSQRLARLRD 50 (50)
T ss_dssp CCCHHHHHHHHHTTCC---------CHHH--HHH--------------------------HHHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHhCchHHhhccccccccc--CCC--------------------------CCcccHHHHHHHHHHHhC
Confidence 36899999999999999999988776431 111 013458999999999995
No 4
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=98.37 E-value=1.6e-06 Score=65.67 Aligned_cols=55 Identities=18% Similarity=0.389 Sum_probs=40.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhh--hccCccccHHHHHHHHHHHHHH
Q psy13382 116 QMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMD--DAMDADEDEDETNAVVTQVLDE 170 (237)
Q Consensus 116 ~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~--~~~~~~~~eeE~d~lv~qvldE 170 (237)
.|++++|..+|+++..+++..+.|+++|+..++ +.+++++.+.|+++|....+++
T Consensus 2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~ 58 (104)
T 3um3_B 2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDK 58 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999874 2233333344455544444444
No 5
>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=98.07 E-value=6.1e-07 Score=60.12 Aligned_cols=16 Identities=50% Similarity=0.900 Sum_probs=13.7
Q ss_pred CcHHHHHHHHHhhhcC
Q psy13382 222 DADADLQARLDNLRRE 237 (237)
Q Consensus 222 ~~ed~L~~RL~~Lr~~ 237 (237)
..|||||+||++||++
T Consensus 38 ~~ddDLQARLdsLRR~ 53 (54)
T 2v6x_B 38 NPDDDLQARLNTLKKQ 53 (54)
T ss_dssp -CCHHHHHHHHHHHCC
T ss_pred CchHHHHHHHHHhccC
Confidence 4589999999999985
No 6
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=97.73 E-value=1.7e-05 Score=67.52 Aligned_cols=147 Identities=18% Similarity=0.266 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 14 MLRKNQRALNKAMRDLDREKQHMEQQEKKLIAD-----IKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSL 88 (237)
Q Consensus 14 ~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~-----iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~ 88 (237)
.||...|.|.+.++.|+++-+++..+-|+.-.+ +|-.|+ +.=..|-+...+++. ..+|.....+|+...+
T Consensus 18 ~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAk--elVR~Rk~~~rl~~~---kaqL~sV~~rlqt~~s 92 (218)
T 3frt_A 18 KIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAK--EMIRSRKAVSKLYAS---KAHMNSVLMGMKNQLA 92 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 455555556666666666555555554443322 222222 222223233333322 2344445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHHHH
Q psy13382 89 KIQTLRSQNAMAEAMKGCSRAM--QNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQ 166 (237)
Q Consensus 89 ~lq~a~s~~~~~~am~~~~k~M--~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~q 166 (237)
..+.+.++..++.+|+.+.+.| ..+.+.| .++++ +|.+--..-++++++|+++++...++++.+++++.+++.
T Consensus 93 ~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM--~efek---E~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldE 167 (218)
T 3frt_A 93 VLRVAGSLQKSTEVMKAMQSLVKIPEIQATM--RELSK---EMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFE 167 (218)
T ss_dssp CC----CCCCCHHHHHHHHHSTTSHHHHHHH--HHHHH---HHHHHSCC----------------CTTSTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH--HHHHH---HHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHH
Confidence 5455555555555555555554 3333332 22222 233322233445555555554433344445555555555
Q ss_pred HHHH
Q psy13382 167 VLDE 170 (237)
Q Consensus 167 vldE 170 (237)
+...
T Consensus 168 i~~~ 171 (218)
T 3frt_A 168 ITAG 171 (218)
T ss_dssp C---
T ss_pred HhHh
Confidence 5544
No 7
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=97.63 E-value=1.7e-05 Score=65.49 Aligned_cols=148 Identities=14% Similarity=0.183 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 21 ALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRT-RKYAKKFMMMKANIQAVSLKIQTLRSQNAM 99 (237)
Q Consensus 21 ~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~-rk~~~~l~~~~aql~sv~~~lq~a~s~~~~ 99 (237)
.||...+.|.+.++.|+++..+++.+-|+....= ..+++--.++..|. =+...+.-+...+|-...++|++.....+.
T Consensus 11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~I-kka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt 89 (179)
T 2gd5_A 11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSV-KDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 89 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999998888877663310 11222111223332 234455566788888899999999999888
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHH-----HHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHHHHHHHHh
Q psy13382 100 AEAMKGCSRAMQNMNRQMNLPQIQRIL-----QEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDEL 171 (237)
Q Consensus 100 ~~am~~~~k~M~~~n~~m~l~ki~~~M-----~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~qvldE~ 171 (237)
..++..++.+|+...+.|+. +...| ..+..+|++--..-++++++|++.+++..++++.+++++.+++.+
T Consensus 90 ~~~~~~v~~am~~~~~~M~~--~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kV 164 (179)
T 2gd5_A 90 QLAVLRVAGSLQKSTEVMKA--MQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI 164 (179)
T ss_dssp HHHHHHHTSSCCCCSHHHHT--TTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHH
Confidence 88888888888777655432 22333 334445555555555568899988876656566666666666555
No 8
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=97.15 E-value=0.023 Score=47.21 Aligned_cols=166 Identities=7% Similarity=0.145 Sum_probs=109.0
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 3 WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKAN 82 (237)
Q Consensus 3 ~~Fg~k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aq 82 (237)
.+||..+.+ -+.+..|+.++-.|.=-.+|-+...++.+.+|-..++.|..+.||+-+.++||-.+...=|.-+---
T Consensus 2 ~mf~~~~~~----~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilEly 77 (191)
T 3frr_A 2 HMLGSGFKA----ERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELY 77 (191)
T ss_dssp --CCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478887764 3677778888888887778888888899999999999999999999999999999988776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhc-CCHHHHHHHH----HHHHHHHHHhhh------HHHHHhhhhhhc
Q psy13382 83 IQAVSLKIQTLRSQNAMAEAMKGCS-RAMQNMNRQ-MNLPQIQRIL----QEFEKQSEIMDM------KEEMMNDAMDDA 150 (237)
Q Consensus 83 l~sv~~~lq~a~s~~~~~~am~~~~-k~M~~~n~~-m~l~ki~~~M----~ef~~q~e~~~~------~~e~m~d~~~~~ 150 (237)
.+-+..++.....+...-..++.+. ..+=...+. -++|++..+= .+|-++|...-+ +.+.+-.-+..
T Consensus 78 CelL~~R~~li~~~k~cp~~l~EAvsslIyAa~R~~~elpEL~~ir~~l~~KyGkeF~~~a~e~~~~~Vn~~iv~kLs~- 156 (191)
T 3frr_A 78 CDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSV- 156 (191)
T ss_dssp HHHHHHTHHHHHSCSSCCGGGHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCHHHHHHHHTTTTSCSCHHHHHHTCC-
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCHHHHHHcCC-
Confidence 6666666555544333333333333 344445554 6888886554 445555554311 11111112221
Q ss_pred cCccccHHHHHHHHHHHHHHhchhh
Q psy13382 151 MDADEDEDETNAVVTQVLDELGLQL 175 (237)
Q Consensus 151 ~~~~~~eeE~d~lv~qvldE~g~e~ 175 (237)
..-+.+-++..+..|+.++|++.
T Consensus 157 --~~P~~~lv~~yL~EIA~~y~V~w 179 (191)
T 3frr_A 157 --EAPPKILVERYLIEIAKNYNVPY 179 (191)
T ss_dssp --SCCCHHHHHHHHHHHHHHHTCCC
T ss_pred --CCcCHHHHHHHHHHHHHHcCCCC
Confidence 12245678888888888888765
No 9
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=97.11 E-value=0.016 Score=41.48 Aligned_cols=74 Identities=14% Similarity=0.247 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy13382 14 MLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKK-FMMMKANIQAVSLKIQT 92 (237)
Q Consensus 14 ~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~-l~~~~aql~sv~~~lq~ 92 (237)
.++++...|+.....|++....|+..-.......|+++ .+| |.-|..++|.+|+++. |-...+++..+..++.+
T Consensus 3 ~~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~kn----K~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~ 77 (79)
T 4abm_A 3 MEQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKN----KRAALQALKRKKRYEKQLAQIDGTLSTIEFQREA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667778888888899988999988888888899888 556 4478899999998877 55566677776666544
No 10
>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.0005 Score=46.40 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCccccHHHHHHHHHHHHHH
Q psy13382 117 MNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDE 170 (237)
Q Consensus 117 m~l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~qvldE 170 (237)
||+.+|..+++++...++..+.++++|+.+++--..++.++++++++++.+.+|
T Consensus 1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de 54 (59)
T 2luh_B 1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQE 54 (59)
T ss_dssp CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcc
Confidence 588999999999999999999999999999873222356789999999888877
No 11
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=95.91 E-value=0.26 Score=40.93 Aligned_cols=160 Identities=6% Similarity=0.122 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 13 EMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQT 92 (237)
Q Consensus 13 e~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~sv~~~lq~ 92 (237)
...-+.+..|+.++-.|.=-.+|-+...+..+.+|-..++.|..+.||+-+.++||-.+.+.=|.-+---.+-+..++..
T Consensus 7 ~~~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~l 86 (193)
T 3ggy_A 7 PFTIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQV 86 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888899999999888889999999999999999999999999999999999998877665555555555555444
Q ss_pred HHH--------HHHHHHHHHHHH-HHHHHHHhcCCHHHHHHH----HHHHHHHHHHh------hhHHHHHhhhhhhccCc
Q psy13382 93 LRS--------QNAMAEAMKGCS-RAMQNMNRQMNLPQIQRI----LQEFEKQSEIM------DMKEEMMNDAMDDAMDA 153 (237)
Q Consensus 93 a~s--------~~~~~~am~~~~-k~M~~~n~~m~l~ki~~~----M~ef~~q~e~~------~~~~e~m~d~~~~~~~~ 153 (237)
... ....-..++.+. ..+=...+.-+++++..+ +.+|-++|... |+-..++.- +.. .
T Consensus 87 l~~~~~e~~~~~k~cp~~l~EAvsslIyAa~R~~elpEL~~ir~~l~~KyGkeF~~~a~en~~gVn~kiv~k-Ls~---~ 162 (193)
T 3ggy_A 87 INDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKDLMAWKINVEFVNGVIADHIDVPEKIIKK-CSP---S 162 (193)
T ss_dssp HTTCCSHHHHHHHSSSSSHHHHHHHHHHHGGGCTTCTTHHHHHHHHHHHTCHHHHHHHHHHCTTCCHHHHHH-HSC---C
T ss_pred HHhhcccccccccCCCHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCHHHHHHHHhcCCCCCHHHHHH-cCC---C
Confidence 433 222222333333 333444454688887554 34455555432 222222222 221 1
Q ss_pred cccHHHHHHHHHHHHHHhchhhh
Q psy13382 154 DEDEDETNAVVTQVLDELGLQLG 176 (237)
Q Consensus 154 ~~~eeE~d~lv~qvldE~g~e~~ 176 (237)
.-+.+-++..+..|+.++|++.+
T Consensus 163 ~P~~elv~~yL~EIA~ey~V~w~ 185 (193)
T 3ggy_A 163 VPKEELVDLYLKEIAKTYDVPYS 185 (193)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCHH
T ss_pred CcCHHHHHHHHHHHHHHcCCCCC
Confidence 12467788999999999998765
No 12
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=93.97 E-value=0.026 Score=32.48 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.9
Q ss_pred CCcHHHHHHHHHhhhc
Q psy13382 221 SDADADLQARLDNLRR 236 (237)
Q Consensus 221 ~~~ed~L~~RL~~Lr~ 236 (237)
.+.||.|.+||++||.
T Consensus 14 eekEDkLAqRLRALR~ 29 (29)
T 3ggz_E 14 DEKEDKLAQRLRALRG 29 (29)
T ss_pred chhhHHHHHHHHHHcC
Confidence 5668999999999993
No 13
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=83.68 E-value=0.32 Score=30.11 Aligned_cols=10 Identities=50% Similarity=0.800 Sum_probs=8.9
Q ss_pred HHHHHHhhhc
Q psy13382 227 LQARLDNLRR 236 (237)
Q Consensus 227 L~~RL~~Lr~ 236 (237)
++.||++||.
T Consensus 31 MqsRLaALRS 40 (40)
T 2xze_Q 31 MQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhcC
Confidence 7889999995
No 14
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=81.14 E-value=1 Score=30.01 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=15.5
Q ss_pred HHHhhhHHHHHhhhhhhccCccccHHHHHHHHHHHHHHhc
Q psy13382 133 SEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELG 172 (237)
Q Consensus 133 ~e~~~~~~e~m~d~~~~~~~~~~~eeE~d~lv~qvldE~g 172 (237)
|+..+.|+++|+.+++ +. +.+|+|+++++..+.+|..
T Consensus 1 ~e~a~EIqealsr~~g--~~-diDEdEL~aELe~LeqE~~ 37 (57)
T 2lxm_B 1 MEDANEINEALSRSYG--TP-ELDEDDLEAELDALGDELL 37 (57)
T ss_dssp ---------------C--CC-CCCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHcCCCC--CC-CCCHHHHHHHHHHHHHHHh
Confidence 4567788999999876 33 4677888888888777764
No 15
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=79.04 E-value=0.87 Score=24.92 Aligned_cols=13 Identities=54% Similarity=0.718 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhhc
Q psy13382 224 DADLQARLDNLRR 236 (237)
Q Consensus 224 ed~L~~RL~~Lr~ 236 (237)
-+||+.||+.||.
T Consensus 10 ledlqerlrklrk 22 (27)
T 3twe_A 10 LEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3799999999984
No 16
>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}
Probab=77.79 E-value=9.6 Score=28.98 Aligned_cols=47 Identities=6% Similarity=0.190 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13382 69 TRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNR 115 (237)
Q Consensus 69 ~rk~~~~l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~ 115 (237)
+++...||-+...|+.+|..-|+.-.....+...+..+..++..++.
T Consensus 9 kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~~~~ 55 (119)
T 2hh7_A 9 KRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANR 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34566778899999999999888888889999999988888888753
No 17
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=64.03 E-value=30 Score=25.54 Aligned_cols=46 Identities=20% Similarity=0.207 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhhhccC--ccccHHHHHHHHHHHHHHh
Q psy13382 126 LQEFEKQSEIMDMKEEMMNDAMDDAMD--ADEDEDETNAVVTQVLDEL 171 (237)
Q Consensus 126 M~ef~~q~e~~~~~~e~m~d~~~~~~~--~~~~eeE~d~lv~qvldE~ 171 (237)
++++..++...-..++=|+++|...++ .+.+++|+++++..+..|.
T Consensus 8 Ve~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~ 55 (104)
T 3um3_B 8 VDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEE 55 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHH
Confidence 345555666666666678888887664 3568999999999998876
No 18
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=60.30 E-value=27 Score=27.07 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13382 68 RTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQ 116 (237)
Q Consensus 68 r~rk~~~~l~~~~aql~sv~~~lq~a~s~~~~~~am~~~~k~M~~~n~~ 116 (237)
.+++...||-+...|+.+|..-|+.-.....+...+..+..++..++..
T Consensus 50 ~Kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~v~~~ 98 (136)
T 4adz_A 50 QKAEHLKRLRRIEGQIRGLQRMVDEDVYCIDILTQVSASTKALQSFALQ 98 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667788999999999988888888888988888888888887643
No 19
>3aai_A Copper homeostasis operon regulatory protein; all alpha proteins, 4-helix bundle, transcription; 2.10A {Thermus thermophilus}
Probab=59.97 E-value=27 Score=25.20 Aligned_cols=47 Identities=6% Similarity=0.197 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q psy13382 69 TRKYAKKFMMMKANIQAVSLKIQTLR-SQNAMAEAMKGCSRAMQNMNR 115 (237)
Q Consensus 69 ~rk~~~~l~~~~aql~sv~~~lq~a~-s~~~~~~am~~~~k~M~~~n~ 115 (237)
+++-..||-+...|+.+|..-|+.-. ....+...+..+..++..++.
T Consensus 13 k~~~l~RLkRieGQv~gI~rMiEe~~~~C~dIl~QlaAvr~Al~~~~~ 60 (94)
T 3aai_A 13 REEARRRLLSAKGHLEGILRMLEDEKVYCVDVLKQLKAVEGALDRVGE 60 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 34556778889999999999888887 888999899988888888754
No 20
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=52.95 E-value=49 Score=29.51 Aligned_cols=66 Identities=17% Similarity=0.361 Sum_probs=37.4
Q ss_pred CccccCCC-CChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHH
Q psy13382 1 MEWLFGRK-ITPEEMLRKNQRALNKAMRDLD---REKQHMEQQEKKLIADIKKMAKE-----GQMESVKIMAKDLVRT 69 (237)
Q Consensus 1 m~~~Fg~k-~tpke~~r~~~r~Lr~~~R~Le---re~~kle~eekk~~~~iKkaakk-----g~~~~aki~Ak~lvr~ 69 (237)
|+ ||++ +||.|.+|..+-.|-+-- ... +...+.+.+-.|.-.+||..+-. .+.+.+..+|+++.+.
T Consensus 3 m~--F~~~~ktP~elVr~l~d~l~~l~-~~~~~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~ 77 (341)
T 1upk_A 3 FP--FGKSHKSPADIVKNLKESMAVLE-KQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNS 77 (341)
T ss_dssp ---------CCHHHHHHHHHHHHHHHH-C---CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHH
T ss_pred CC--CCCCCCCHHHHHHHHHHHHHHHh-ccccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHh
Confidence 56 8865 699999888766655321 111 22245656777777777777652 2456788888887764
No 21
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=52.92 E-value=50 Score=24.04 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 12 EEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIAD 46 (237)
Q Consensus 12 ke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~ 46 (237)
..+++.....|..++++|++++..||.-....+.-
T Consensus 42 c~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~L 76 (96)
T 1t3j_A 42 CQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLL 76 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45666777777777777777777776655544443
No 22
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=44.13 E-value=88 Score=22.62 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 22 LNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQA 85 (237)
Q Consensus 22 Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~~~~aql~s 85 (237)
|...+.+|.+++.+..+...-+..-++-..+..++......+..|....+.+..|-.-..++.+
T Consensus 20 L~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~ 83 (98)
T 2ke4_A 20 LQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEA 83 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777777777766666666666666533322222255555555544444333333333
No 23
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=38.39 E-value=55 Score=26.34 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=30.1
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 3 WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKM 50 (237)
Q Consensus 3 ~~Fg~k~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKka 50 (237)
.||.....-+..+|.....|+.....|++.+..|+++...+...|...
T Consensus 35 ~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l 82 (174)
T 2p22_A 35 KILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVL 82 (174)
T ss_dssp HTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467665666666777777766666666666666666665555555433
No 24
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=36.94 E-value=55 Score=23.51 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy13382 23 NKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRK 71 (237)
Q Consensus 23 r~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk 71 (237)
...+|+|.+....|-+++.....+++.-.| | |.||.++ |+|+
T Consensus 5 ~msVreLN~~L~gls~eev~~lKq~RRtlK--N----RgyAq~C-R~Kr 46 (90)
T 2wt7_B 5 SMSVRELNRHLRGFTKDEVIRLKQKRRTLK--N----RGYAQSC-RYKR 46 (90)
T ss_dssp HSCHHHHHTTCTTCCHHHHHHHHHHHHHHH--H----HHHHHHH-HHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHhhh--h----hHHHHHH-HHHH
Confidence 345677888778888899888899998888 3 7788888 4444
No 25
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=35.66 E-value=84 Score=19.92 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 13 EMLRKNQRALNKAMRDLDREKQHMEQQEKKLIA 45 (237)
Q Consensus 13 e~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~ 45 (237)
+.+-+| -.-|+..++|+|..++..+.-++++.
T Consensus 4 e~LeqW-v~~Rkk~eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 4 DILEQW-VSGRKKLEELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 455555 23456667777777766666555554
No 26
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.93 E-value=95 Score=19.09 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 24 KAMRDLDREKQHMEQQEKKLIADIKKM 50 (237)
Q Consensus 24 ~~~R~Lere~~kle~eekk~~~~iKka 50 (237)
..+..++|+|.+-+.+-..++.+.+..
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777766666654
No 27
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=29.79 E-value=2e+02 Score=22.37 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhh
Q psy13382 121 QIQRILQEFEKQSEIMDMKEEMMNDA 146 (237)
Q Consensus 121 ki~~~M~ef~~q~e~~~~~~e~m~d~ 146 (237)
+...+..+|...|..+..++.-+.+-
T Consensus 127 q~~~L~~kf~~~m~~yq~~q~~y~~~ 152 (180)
T 1s94_A 127 QYSTISRKFVEVMSDYNTTQIDYRDR 152 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777777666666555543
No 28
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.25 E-value=1.5e+02 Score=21.18 Aligned_cols=44 Identities=18% Similarity=0.359 Sum_probs=31.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy13382 10 TPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKE 53 (237)
Q Consensus 10 tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakk 53 (237)
+..+.+.+.+-.|...+..|+.++..++.+-..++..+......
T Consensus 70 ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34556666777777777777777777777777777777776654
No 29
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=28.84 E-value=1.6e+02 Score=21.18 Aligned_cols=40 Identities=10% Similarity=0.073 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q psy13382 34 QHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYA 73 (237)
Q Consensus 34 ~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~ 73 (237)
+.+.++-.++..+|..+...|+.+.+.-++.++++.+++.
T Consensus 101 ~~~~r~l~~~~~~i~~~~~~~d~~~~l~~~~el~~l~~~l 140 (143)
T 2r6a_C 101 RPKWLMLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKML 140 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 3455666667778888888999998888888888877653
No 30
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=27.97 E-value=1.1e+02 Score=19.52 Aligned_cols=33 Identities=12% Similarity=0.440 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhcc
Q psy13382 119 LPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAM 151 (237)
Q Consensus 119 l~ki~~~M~ef~~q~e~~~~~~e~m~d~~~~~~ 151 (237)
+.++++++|+++.+...-...-..+.+.++.++
T Consensus 14 V~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl 46 (52)
T 2z5i_A 14 VARLKKLVDDLEDELYAQKLKYKAISEELDHAL 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 456677777777666655555555555555444
No 31
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=26.30 E-value=1.6e+02 Score=20.07 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Q psy13382 39 QEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKF 76 (237)
Q Consensus 39 eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l 76 (237)
+..-++.-|+.|.+.+..+-+.+|..||=-.+.++.++
T Consensus 28 Q~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~ 65 (69)
T 1z0k_B 28 QIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQ 65 (69)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 34445667888989999999999999987777666554
No 32
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=24.43 E-value=1.3e+02 Score=26.35 Aligned_cols=74 Identities=7% Similarity=0.060 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhHH---HHHhhhhhhccCccccHHHHHHHHHHHHHHhchhhhhhcc
Q psy13382 104 KGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKE---EMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLA 180 (237)
Q Consensus 104 ~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~~~~~---e~m~d~~~~~~~~~~~eeE~d~lv~qvldE~g~e~~~~L~ 180 (237)
...+..|..+ +.++.+.+..++.+|...+...+.+. +++.+.+..+++. +.+..+++.+....+......|.
T Consensus 40 ~~l~~~ma~l-~~v~~~~~~~Vl~EF~~~~~~~~~i~~gg~~~~~~L~~aLg~----~~A~~ll~~i~~~~~~~~~~~L~ 114 (329)
T 3hjl_A 40 QKLFALAKDL-ESVPEEEIENIAEELLDEIKKAGIKIKKPEEFIENIKKVIPP----TLAEKFRGILELGDAEKILKEIE 114 (329)
T ss_dssp HHHHHHHHTC-CCCCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHSCC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCH----HHHHHHHHHHhccccCCHHHHHH
Confidence 3444444443 57899999999999999988766443 6777777766653 35777888777654433344444
Q ss_pred CC
Q psy13382 181 SI 182 (237)
Q Consensus 181 ~~ 182 (237)
.+
T Consensus 115 ~~ 116 (329)
T 3hjl_A 115 KV 116 (329)
T ss_dssp TS
T ss_pred CC
Confidence 44
No 33
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=24.31 E-value=1.8e+02 Score=20.06 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 22 LNKAMRDLDREKQHMEQQEKKLIADIKKM 50 (237)
Q Consensus 22 Lr~~~R~Lere~~kle~eekk~~~~iKka 50 (237)
.+.++-.|...+..|++.++.+..+|-..
T Consensus 4 ~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e 32 (79)
T 4abm_A 4 EQEAIQRLRDTEEMLSKKQEFLEKKIEQE 32 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888744
No 34
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=24.29 E-value=1.4e+02 Score=19.01 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 38 QQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFM 77 (237)
Q Consensus 38 ~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~ 77 (237)
.+..-++.-|+.|.+.+..+-+.++..|+=-.+.++.++.
T Consensus 9 EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 9 QQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 3445567779999999999999999999977777665543
No 35
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=23.92 E-value=1.3e+02 Score=21.65 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHhh
Q psy13382 101 EAMKGCSRAMQNMNRQMNLP----QIQRILQEFEKQSEIMD 137 (237)
Q Consensus 101 ~am~~~~k~M~~~n~~m~l~----ki~~~M~ef~~q~e~~~ 137 (237)
..++..++.|..|...+++. .=..++.++-.....+-
T Consensus 16 ~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~q 56 (103)
T 1wrd_A 16 EMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQ 56 (103)
T ss_dssp HHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHH
Confidence 44566677777777777663 22356666666655543
No 36
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B
Probab=23.14 E-value=91 Score=21.25 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=16.9
Q ss_pred cccHHHHHHHHHHHHHHhchh
Q psy13382 154 DEDEDETNAVVTQVLDELGLQ 174 (237)
Q Consensus 154 ~~~eeE~d~lv~qvldE~g~e 174 (237)
+.+|+|++++++.+.+|+.++
T Consensus 7 diDE~eL~aELdaL~~e~~~~ 27 (69)
T 3uly_B 7 ELDEDDLEAELDALGDELLAD 27 (69)
T ss_pred CCCHHHHHHHHHHHHHHHhcc
Confidence 467889999999999988654
No 37
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.95 E-value=1.6e+02 Score=19.08 Aligned_cols=38 Identities=16% Similarity=0.312 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 15 LRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAK 52 (237)
Q Consensus 15 ~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaak 52 (237)
+|+--..|+...+.+.+-...=++-.+.++.-+++.++
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334443333333333333344455555555554
No 38
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=21.86 E-value=2.9e+02 Score=22.09 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=17.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 9 ITPEEMLRKNQRALNKAMRDLDREKQHMEQQE 40 (237)
Q Consensus 9 ~tpke~~r~~~r~Lr~~~R~Lere~~kle~ee 40 (237)
++|.|.+|+...-=-+.+..|++++.+||-+-
T Consensus 120 ~~paE~ireli~~AertV~kLqkeiD~LEDeL 151 (175)
T 3mud_A 120 ENPAEVIRELICYCLDTTAKNEKSIDDLEEKV 151 (175)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999884333333334444444444433
Done!