Query psy13382
Match_columns 237
No_of_seqs 186 out of 765
Neff 6.7
Searched_HMMs 13730
Date Fri Aug 16 18:04:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13382.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13382hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d256ba_ a.24.3.1 (A:) Cytochro 74.2 6.4 0.00047 27.3 7.4 35 43-77 71-105 (106)
2 d2csga1 b.82.2.12 (A:3-419) Hy 41.0 25 0.0018 30.0 6.5 46 9-54 10-55 (417)
3 d256ba_ a.24.3.1 (A:) Cytochro 39.5 36 0.0026 23.1 6.1 38 99-136 3-40 (106)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 37.3 24 0.0017 23.9 4.8 38 13-50 68-105 (107)
5 d1ivsa1 a.2.7.3 (A:797-862) Va 29.2 57 0.0042 19.8 6.6 24 29-52 2-25 (66)
6 d2jdig1 c.49.2.1 (G:1-272) ATP 22.3 30 0.0022 26.8 3.5 27 82-108 2-28 (272)
7 d1u9pa1 a.43.1.1 (A:72-107) Ar 20.9 32 0.0023 18.6 2.2 20 159-178 2-21 (36)
8 d1t72a_ a.7.12.1 (A:) Phosphat 20.4 1.5E+02 0.011 21.4 17.3 44 26-73 13-56 (215)
9 d2azeb1 e.63.1.2 (B:201-301) T 17.9 86 0.0063 21.0 4.7 24 27-50 4-27 (101)
10 d1sumb_ a.7.12.1 (B:) PhoU hom 17.7 1.8E+02 0.013 21.2 14.6 52 22-77 4-55 (225)
No 1
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=74.24 E-value=6.4 Score=27.27 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=30.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 43 LIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFM 77 (237)
Q Consensus 43 ~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~ 77 (237)
....|..++..|+.+.|+..+.++-..|+.|.+.|
T Consensus 71 ~ld~i~~la~~G~l~eAk~~l~~l~~~r~~YHkk~ 105 (106)
T d256ba_ 71 QIDDALKLANEGKVKEAQAAAEQLKTTRNAYHQKY 105 (106)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 34568889999999999999999999999887765
No 2
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]}
Probab=40.99 E-value=25 Score=30.01 Aligned_cols=46 Identities=17% Similarity=0.354 Sum_probs=41.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy13382 9 ITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEG 54 (237)
Q Consensus 9 ~tpke~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg 54 (237)
.++...+|+.|+.||....++..--++|+..-+++..+|+...++|
T Consensus 10 ~dl~~~i~~~K~~Lr~~~~~~~~~f~~l~~~i~~ev~eI~~l~~~G 55 (417)
T d2csga1 10 ADPKAAIRQMKQALRAQIGDVQAVFDRLSATIAARVAEINDLKAQG 55 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4667899999999999999999999999999999999998876655
No 3
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=39.46 E-value=36 Score=23.07 Aligned_cols=38 Identities=11% Similarity=0.203 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q psy13382 99 MAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIM 136 (237)
Q Consensus 99 ~~~am~~~~k~M~~~n~~m~l~ki~~~M~ef~~q~e~~ 136 (237)
+-.+|+....+++.+.+.-+++.|...|++|..-+.+.
T Consensus 3 l~~~M~~m~~a~k~~~~A~s~~Ei~~~m~~lr~a~~d~ 40 (106)
T d256ba_ 3 LEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDA 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888999999999999998876653
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=37.34 E-value=24 Score=23.88 Aligned_cols=38 Identities=13% Similarity=0.337 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 13 EMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKM 50 (237)
Q Consensus 13 e~~r~~~r~Lr~~~R~Lere~~kle~eekk~~~~iKka 50 (237)
+.+.+..-.|...+..|++++..++.+-..+..+|.++
T Consensus 68 ~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~~ 105 (107)
T d1fxka_ 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666666666666666655544
No 5
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=29.22 E-value=57 Score=19.79 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 29 LDREKQHMEQQEKKLIADIKKMAK 52 (237)
Q Consensus 29 Lere~~kle~eekk~~~~iKkaak 52 (237)
++.++.+|+++..++...|...-+
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~ 25 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQR 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777766654
No 6
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.35 E-value=30 Score=26.77 Aligned_cols=27 Identities=7% Similarity=0.373 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 82 NIQAVSLKIQTLRSQNAMAEAMKGCSR 108 (237)
Q Consensus 82 ql~sv~~~lq~a~s~~~~~~am~~~~k 108 (237)
.|..+..++.+..++.+++++|+-++.
T Consensus 2 ~Lkeik~RI~Sv~~t~kITkAMkmVAa 28 (272)
T d2jdig1 2 TLKDITRRLKSIKNIQKITKSMKMVAA 28 (272)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777778888888888887663
No 7
>d1u9pa1 a.43.1.1 (A:72-107) Arc repressor {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=20.89 E-value=32 Score=18.60 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhchhhhhh
Q psy13382 159 ETNAVVTQVLDELGLQLGDQ 178 (237)
Q Consensus 159 E~d~lv~qvldE~g~e~~~~ 178 (237)
|+-.+|-+|++|.|-.++..
T Consensus 2 evldlvrkvaeeng~s~ns~ 21 (36)
T d1u9pa1 2 EVLDLVRKVAEENGRSVNSE 21 (36)
T ss_dssp HHHHHHHHHHHHHTCCHHHH
T ss_pred cHHHHHHHHHHHcCcchhHH
Confidence 56678999999999776654
No 8
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=20.42 E-value=1.5e+02 Score=21.40 Aligned_cols=44 Identities=9% Similarity=0.235 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q psy13382 26 MRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYA 73 (237)
Q Consensus 26 ~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~ 73 (237)
..+|..++.++-..-...-...-.++..+|.+ +|+.++..-+.+
T Consensus 13 L~~l~~~l~~M~~~v~~~l~~~~~al~~~D~~----~a~~v~~~d~~i 56 (215)
T d1t72a_ 13 LEETKEQVIKMAKLVQEAIDKATEALNKQNVE----LAEEVIKGDDTI 56 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH----HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHhHHHH
Confidence 44455555555555555566667777888865 445555544433
No 9
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.90 E-value=86 Score=20.99 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 27 RDLDREKQHMEQQEKKLIADIKKM 50 (237)
Q Consensus 27 R~Lere~~kle~eekk~~~~iKka 50 (237)
..|..|+..|+.+|+.+...|+.+
T Consensus 4 ~~L~~El~~L~~~E~~LD~li~~~ 27 (101)
T d2azeb1 4 EGLTQDLRQLQESEQQLDHLMNIC 27 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544
No 10
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=17.71 E-value=1.8e+02 Score=21.21 Aligned_cols=52 Identities=10% Similarity=0.167 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13382 22 LNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFM 77 (237)
Q Consensus 22 Lr~~~R~Lere~~kle~eekk~~~~iKkaakkg~~~~aki~Ak~lvr~rk~~~~l~ 77 (237)
+.....+|.+++.++-..-...-.....+...+|.+ +|+.++..-+.+.+++
T Consensus 4 ~~~~l~~l~~~i~~M~~~v~~~l~~a~~al~~~D~~----~a~~V~~~d~~Id~l~ 55 (225)
T d1sumb_ 4 LNEKVEEFKKGVLKAGWFIEKMFRNSISSLVERNES----LAREVIADEEVVDQME 55 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH----HHHHHHHhHHHHHHHH
Confidence 444556666666667666666667777788888855 5566766666555544
Done!