RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13382
(237 letters)
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP,
IST1, coiled coil, cytoplasm, lipoprotein, membrane,
myristate, phosphoprotein; 4.00A {Homo sapiens}
Length = 218
Score = 136 bits (343), Expect = 4e-40
Identities = 50/230 (21%), Positives = 108/230 (46%), Gaps = 15/230 (6%)
Query: 6 GRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKD 65
++ P+E++ + + K MR +DR+ + ++++E+K+ +K AK+GQ + ++AK+
Sbjct: 3 MQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKE 62
Query: 66 LVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRI 125
++R+RK K KA++ +V + ++ + +A +++ + M+ M + +P+IQ
Sbjct: 63 MIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQAT 122
Query: 126 LQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLASIPDP 185
++E K+ + EEM+ D + D +E E+E + ++L E+ + S
Sbjct: 123 MRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTD 182
Query: 186 ASSMMSDKGKTPVAIPGGSGSNHSNNHGGGGGSTLSDADADLQARLDNLR 235
A G + +A +Q+RL LR
Sbjct: 183 ALPEPEPPGAMAAS---------------EDEEEEEEALEAMQSRLATLR 217
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein
transport; 2.80A {Homo sapiens} PDB: 3frv_A
Length = 179
Score = 133 bits (335), Expect = 2e-39
Identities = 42/174 (24%), Positives = 95/174 (54%)
Query: 8 KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLV 67
+ P+E++ + + K MR +DR+ + ++++E+K+ +K AK+GQ + ++AK+++
Sbjct: 5 EKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMI 64
Query: 68 RTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQ 127
R+RK K KA++ +V + ++ + +A +++ + M+ M + +P+IQ ++
Sbjct: 65 RSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMR 124
Query: 128 EFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLAS 181
E K+ + EEM+ D + D +E E+E + ++L E+ + S
Sbjct: 125 ELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPS 178
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 4e-06
Identities = 26/254 (10%), Positives = 71/254 (27%), Gaps = 81/254 (31%)
Query: 3 WL-FGRKITPEEMLRKNQRALNKAMRDL------------------DREKQHMEQQEKK- 42
WL +PE +L Q+ L + + ++ ++ + +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 43 --LIAD---IKKMAKEGQMESVKIMAKDLVRTR----------KYAKKFMMMKAN----- 82
L+ K + + K L+ TR + +
Sbjct: 246 CLLVLLNVQNAKAWN-----AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 83 -------IQAVSLKIQTLRSQ----NAMAEAMKGCSRAMQNMN------RQMNLPQIQRI 125
++ + + Q L + N ++ + ++++ + +N ++ I
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI--IAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 126 LQEFEKQSEIMDMKEEMMNDAM--DDA-------------MDADEDEDETNAVVTQVLDE 170
++ E + ++ ++ A + + N + L
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-- 416
Query: 171 LGLQLGDQLASIPD 184
+ Q + SIP
Sbjct: 417 VEKQPKESTISIPS 430
Score = 39.5 bits (91), Expect = 7e-04
Identities = 30/202 (14%), Positives = 75/202 (37%), Gaps = 40/202 (19%)
Query: 22 LNKAMRDLDREKQHMEQQEKKLI--ADIKKMAKEGQMESVKIMAKDLVRTR--KYAKKFM 77
+ + + D + ++ K ++ +I + S + + ++ + +KF+
Sbjct: 26 EDAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 78 --MMKANIQAVSLKIQTLRSQNAMAEAM-KGCSRAMQNMNR---QMNLP------QIQRI 125
+++ N + + I+T + Q +M M + N N+ + N+ ++++
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 126 LQEFEKQSEIM--DM----KEEMMNDAMDD-----AMD--------ADEDEDETNAVVTQ 166
L E ++ + K + D MD + + ET V +
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET---VLE 200
Query: 167 VLDELGLQLGDQLASIPDPASS 188
+L +L Q+ S D +S+
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSN 222
Score = 32.1 bits (72), Expect = 0.17
Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 3 WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQE---KKLIADIKKMAKEGQMESV 59
+L +KI + ++ ++ L K ++ + ++L+ I ++E
Sbjct: 502 FL-EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP--KIEEN 558
Query: 60 KIMAK--DLVR 68
I +K DL+R
Sbjct: 559 LICSKYTDLLR 569
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 36.4 bits (84), Expect = 0.007
Identities = 26/163 (15%), Positives = 64/163 (39%), Gaps = 6/163 (3%)
Query: 12 EEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAK--EGQMESVKIMAKDLVRT 69
EE KN L + E + ++E+K +++K+ + EG+ + +L
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082
Query: 70 R-KYAKKFMMMKANIQAVSLKIQTLRSQ-NAMAEAMKGCSRAMQNMNRQMNLPQIQRILQ 127
+ + + +QA +++ SQ N + ++ + ++ + + R
Sbjct: 1083 IAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAAR--N 1140
Query: 128 EFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDE 170
+ EKQ + + E + ++D +D + E + D+
Sbjct: 1141 KAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 28.6 bits (64), Expect = 1.9
Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 16/145 (11%)
Query: 15 LRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAK 74
L + A + L EK + + KK+ DI M + K + +
Sbjct: 960 LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQ--------NNKLTKERKLLEE 1011
Query: 75 KFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSE 134
+ + N+ K + L E+M ++ L + ++ QE EK
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHESMIS--------ELEVRLKKEEKSRQELEKIKR 1063
Query: 135 IMDMKEEMMNDAMDDAMDADEDEDE 159
++ + +++ + + +
Sbjct: 1064 KLEGESSDLHEQIAELQAQIAELKA 1088
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.012
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 23/53 (43%)
Query: 32 EKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQ 84
EKQ + KKL + S+K+ A D + + +KA ++
Sbjct: 18 EKQAL----KKL---------QA---SLKLYADD-------SAPALAIKATME 47
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 34.4 bits (78), Expect = 0.034
Identities = 27/163 (16%), Positives = 61/163 (37%), Gaps = 9/163 (5%)
Query: 12 EEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRK 71
E R Q A + R ++ E+ K+L+ + K A+ +
Sbjct: 675 HEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAAR 734
Query: 72 YAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEK 131
+ +++A ++A +L I+ EA + ++ M Q++ + + ++
Sbjct: 735 IEGEGSVLQAKLKAQALAIE--------TEAELERVKKVREMELIYARAQLELEVSKAQQ 786
Query: 132 QSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQ 174
+ + K + M +A+ D V ++L LGL+
Sbjct: 787 LANVEAKKFKEMTEALGPGTIRDLAVAGPEMQV-KLLQSLGLK 828
>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole,
endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B,
VPS4A; 1.98A {Saccharomyces cerevisiae}
Length = 54
Score = 29.8 bits (66), Expect = 0.090
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 186 ASSMMSDKGKTPVAIPGGSGSNHSNNHG-GGGGSTLSDADADLQARLDNLRRE 237
S M+ + V+ + + G G + D DLQARL+ L+++
Sbjct: 1 GSHMLQSTPQNLVSNAPIAETAMGIAEPIGAGSEFHGNPDDDLQARLNTLKKQ 53
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.26
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 20 RALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIM 62
RAL+ L+ K +K+ DI ++ K +E V+
Sbjct: 1860 RALDTVTNVLNFIK------LQKI--DIIELQKSLSLEEVEGH 1894
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide
binding, nucle structural protein-transport protein
complex; 1.85A {Saccharomyces cerevisiae}
Length = 97
Score = 29.3 bits (66), Expect = 0.30
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 137 DMKEEMMNDAMD---DAMDADEDEDETNAVVTQVLDE 170
D+ +++ D + DA+D + E + V + LD
Sbjct: 20 DITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDV 56
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 30.9 bits (69), Expect = 0.36
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 106 CSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDETNAVVT 165
+ + +LP++ +L K S+ +D+ + D +
Sbjct: 284 AEQPICKDVLVRHLPKLIPVLVNGMKYSD-IDIILLKGDVEGGSGGDDTISDWNLRKCSA 342
Query: 166 QVLDELGLQLGDQL 179
LD L D+L
Sbjct: 343 AALDVLANVYRDEL 356
>2xes_A Protein PAT1 homolog 1; mRNA decapping, P-bodies, RNA binding
protein; 2.10A {Homo sapiens} PDB: 2xer_A 2xeq_A
Length = 248
Score = 30.0 bits (67), Expect = 0.65
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 120 PQIQR----ILQEFEKQ-SEIMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQ 174
PQ L EK S ++D+++ + + D+ + + D L +
Sbjct: 2 PQDPDKRRKTLVIIEKTYSLLLDVEDYERRYLLSLEEERPALMDDRKHKICSMYDNLRGK 61
Query: 175 LGDQLASIPDPASSMMS-DKGKTPVA 199
L Q D +M KGK VA
Sbjct: 62 LPGQERPSDDHFVQIMCIRKGKRMVA 87
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form,
glycosyltransferase; HET: PLP; 2.80A {Saccharomyces
cerevisiae} SCOP: c.87.1.4
Length = 879
Score = 30.2 bits (69), Expect = 0.69
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 142 MMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLASIPDPA 186
++N ++D D + + ++ LDELG +L D L PD
Sbjct: 116 LINMKIEDPEDPAASKGKPREMIKGALDELGFKLEDVLDQEPDAG 160
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.55A {Enterococcus faecalis}
Length = 899
Score = 29.8 bits (66), Expect = 0.85
Identities = 8/71 (11%), Positives = 22/71 (30%), Gaps = 18/71 (25%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQH--------------MEQQEKKLIAD 46
EW EE + ++ + ++ + + Q +
Sbjct: 19 REWYL----PYEEHHMRLIELVDNVLDLIENDPEFNSFHLDGQTIILDDYLQVRPEKKEA 74
Query: 47 IKKMAKEGQME 57
+KK + G+++
Sbjct: 75 VKKAVQAGKLK 85
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub
malaria, SGC, transport protein; 1.65A {Plasmodium
falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A
2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A
1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Length = 102
Score = 27.9 bits (62), Expect = 1.0
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 136 MDMKEEMMNDAMD---DAMDADEDEDETNAVVTQVLDE 170
+DM EEM DA+D A+ E + A + + D
Sbjct: 24 VDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDR 61
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase;
1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Length = 923
Score = 29.4 bits (65), Expect = 1.1
Identities = 5/70 (7%), Positives = 18/70 (25%), Gaps = 18/70 (25%)
Query: 2 EWLFGRKITPEEMLRKNQRALNKAMRDLDREKQH--------------MEQQEKKLIADI 47
EW E+ + ++ + + + + +I
Sbjct: 39 EWYM----AYEQHHMRLINLIDDLLEVFQTDPDFHSFHLDGQTIILDDYLKVRPEREPEI 94
Query: 48 KKMAKEGQME 57
++ G++
Sbjct: 95 RQAIASGKLR 104
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 1.4
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 12 EEMLRKNQRALNKAMRDLDREKQHMEQ----QEKKLIADIKKMAKEGQMESVKIMAKDLV 67
E +RK + K +++LD + MEQ + KK + + + E Q+E K +
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE-QVEKNK------I 136
Query: 68 RTRKYAKKF 76
R K F
Sbjct: 137 NNRIADKAF 145
Score = 27.4 bits (60), Expect = 3.3
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 6/50 (12%)
Query: 12 EEMLRKNQRALNKAMRDL-DREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
Q KA +DL + ++ EQ EK K + +
Sbjct: 103 AASKVMEQEWREKAKKDLEEWNQRQSEQVEKN-----KINNRIADKAFYQ 147
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 28.4 bits (64), Expect = 2.0
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 141 EMMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLASIPDPASSMMSDKGKTPVAI 200
+++ DA A A +D + +D+ ++L + L D +++ G +
Sbjct: 151 KLVLDAAVAA-GAPKD-------IIGWIDQPSVELSNALMKHDD--IALILATGGPGMVK 200
Query: 201 PGGSGSNHSNNHGGGGGSTLSDADADLQA 229
S + G G + D AD++
Sbjct: 201 AAYSSGKPAIGVGAGNVPVVIDETADIKR 229
>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_Y
Length = 293
Score = 28.3 bits (62), Expect = 2.2
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 3/98 (3%)
Query: 7 RKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDL 66
R ITPE +LRK K R + E +K +++ KK + + +
Sbjct: 181 RLITPERILRKKVYKAEKTQRYVKTNAAKEEY--EKFLSEWKKQRAAKAHAASAPV-VEA 237
Query: 67 VRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMK 104
+ + KK A + K ++ A
Sbjct: 238 PKKVEAPKKVDPKAAKTTPAATKATPAATKVAPKTQAA 275
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase,
nuclease, double strand DNA repair, protein-DNA CO
hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus
subtilis} PDB: 3u44_B*
Length = 1166
Score = 28.5 bits (63), Expect = 2.4
Identities = 16/117 (13%), Positives = 45/117 (38%), Gaps = 2/117 (1%)
Query: 70 RKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGC-SRAMQNMNRQMNLPQIQRILQE 128
R ++F+ + + +I+ N + + + + M + + + L
Sbjct: 448 RFQYRRFVSLDDDFAQTDQEIEMENMLNDTRDWIVPPLFQLQKRMKKAKTVQEKAEALYR 507
Query: 129 FEKQSEIMDMKEEMMNDAMDDAMDADEDEDETN-AVVTQVLDELGLQLGDQLASIPD 184
+ +++++ ++ A DD + + + V Q+L+E +GD S+
Sbjct: 508 YLEETDVPLKLDQERQRAEDDGRIIEAQQHQQAWDAVIQLLEEFVEMMGDDEISLDL 564
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 192
Score = 26.9 bits (60), Expect = 5.1
Identities = 4/15 (26%), Positives = 5/15 (33%)
Query: 189 MMSDKGKTPVAIPGG 203
M + V IP
Sbjct: 1 MKTILSNQTVDIPEN 15
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP,
translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Length = 504
Score = 27.2 bits (61), Expect = 5.4
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 74 KKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQS 133
++ ++ + I+ L M++ + M +N+QM R+L +
Sbjct: 422 TQYTKFAQMVKKMG-GIKGLFKGGDMSKNVSQ--SQMAKLNQQMAKMMDPRVLHHMGGMA 478
Query: 134 EIMDMKEEMMNDAMDDAMD 152
+ M + A +
Sbjct: 479 GLQSMMRQFQQGAAGNMKG 497
>3oeq_A Frataxin homolog, mitochondrial; alpha/beta sandwich,
metallochaperone, iron-storage, transpo protein; 2.96A
{Saccharomyces cerevisiae} PDB: 2fql_A 3oer_A 2ga5_A
Length = 123
Score = 26.0 bits (57), Expect = 5.8
Identities = 6/47 (12%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 127 QEFEKQSE-IMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELG 172
++ ++++ +D + + + + D D + ++ V+T + G
Sbjct: 20 EKAHEEADDYLDHLLDSLEELSEAHPDCIPDVELSHGVMTLEIPAFG 66
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics,
joint center for structural genomics, JCSG; HET: MSE
UNL; 2.32A {Haemophilus somnus 129PT}
Length = 312
Score = 27.1 bits (59), Expect = 6.1
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 207 NHSNNHGGGGGSTLSDADADLQARLDNLRR 236
N S + S +S + L + +
Sbjct: 283 NFSYRYYNKKQSYVSLTQKLINQILHKIDK 312
>2oc5_A Hypothetical protein; DUF3066 family protein, structural genomics,
joint center FO structural genomics, JCSG; HET: UNL;
1.68A {Prochlorococcus marinus} SCOP: a.25.1.6
Length = 244
Score = 26.6 bits (58), Expect = 8.0
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 99 MAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDM-KEEMMNDAM 147
+ ++ C + NR+ NLP I+R+L + + ++ M KE+++ D +
Sbjct: 169 LKANLESCREELLEANRE-NLPLIRRMLDQVAGDAAVLQMDKEDLIEDFL 217
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2,
initiation factor 2 alpha subunit, initiation factor 2
beta subunit; 2.80A {Sulfolobus solfataricus} PDB:
2aho_B 3v11_B*
Length = 266
Score = 26.5 bits (58), Expect = 8.0
Identities = 15/140 (10%), Positives = 47/140 (33%), Gaps = 6/140 (4%)
Query: 35 HMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLR 94
+ K + +I+ + KE + VK++ D + + + +L+ +
Sbjct: 42 PWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWK--- 98
Query: 95 SQNAMAEAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDAD 154
+ + + ++ + Q+ L+ K + + E+ + + +DA
Sbjct: 99 -KIQRLDKILELVSQKLKLSEKDAWEQVAWKLE--AKYGDPITAIEKAVKEGEKILIDAG 155
Query: 155 EDEDETNAVVTQVLDELGLQ 174
E ++ + +
Sbjct: 156 VPEIWVKPLLEEASKHAEER 175
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.126 0.339
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,601,925
Number of extensions: 219746
Number of successful extensions: 871
Number of sequences better than 10.0: 1
Number of HSP's gapped: 855
Number of HSP's successfully gapped: 92
Length of query: 237
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 146
Effective length of database: 4,160,982
Effective search space: 607503372
Effective search space used: 607503372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.9 bits)