RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13382
         (237 letters)



>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 876

 Score = 28.8 bits (64), Expect = 0.62
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 142 MMNDAMDDAMDADEDEDETNAVVTQVLDELGLQLGDQLASIPDPA 186
           ++N  ++D  D    + +   ++   LDELG +L D L   PD  
Sbjct: 113 LINMKIEDPEDPAASKGKPREMIKGALDELGFKLEDVLDQEPDAG 157


>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 194

 Score = 28.0 bits (61), Expect = 0.76
 Identities = 26/170 (15%), Positives = 56/170 (32%), Gaps = 11/170 (6%)

Query: 9   ITPEEMLRKN-----QRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMA 63
           ++  E+LR        +      + +   K    +    L+            +  K + 
Sbjct: 30  LSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLI 89

Query: 64  KDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMAEAMKGCSRAMQNMNRQMNLPQIQ 123
               R +   + +         VS  +    +     E      R   +     N   ++
Sbjct: 90  DGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERC--LERGKSSGRSDDNRESLE 147

Query: 124 RILQEFEKQSE-IMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELG 172
           + +Q + + ++ I+D+ EEM        +DA +  DE    V Q+ D+ G
Sbjct: 148 KRIQTYLQSTKPIIDLYEEMGKVKK---IDASKSVDEVFDEVVQIFDKEG 194


>d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231
           {Prochlorococcus marinus [TaxId: 1219]}
          Length = 222

 Score = 27.8 bits (62), Expect = 0.86
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 106 CSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDM-KEEMMNDAM 147
           C   +   NR+ NLP I+R+L +    + ++ M KE+++ D +
Sbjct: 156 CREELLEANRE-NLPLIRRMLDQVAGDAAVLQMDKEDLIEDFL 197


>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 87

 Score = 26.2 bits (58), Expect = 1.1
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 137 DMKEEMMNDAMD---DAMDADEDEDETNAVVTQVLDE 170
           DM EEM  DA+D    A++    E +  A + +  D+
Sbjct: 10  DMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDK 46


>d2nqra3 c.57.1.2 (A:178-326) MoeA, central domain {Escherichia coli
           [TaxId: 562]}
          Length = 149

 Score = 27.1 bits (59), Expect = 1.2
 Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 6/101 (5%)

Query: 112 NMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADED------EDETNAVVT 165
           + NR      ++++  E      I D    +    ++    AD                 
Sbjct: 26  DTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTK 85

Query: 166 QVLDELGLQLGDQLASIPDPASSMMSDKGKTPVAIPGGSGS 206
            +L+ELG     +LA  P    +           +PG   S
Sbjct: 86  TILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVS 126


>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}
          Length = 173

 Score = 26.6 bits (58), Expect = 2.4
 Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 3/73 (4%)

Query: 101 EAMKGCSRAMQNMNRQMNLPQIQRILQEFEKQSEIMDMKEEMMNDAMDDAMDADEDEDET 160
           +A++           +  +        ++E+   + D   + +   +D   D    E   
Sbjct: 104 DAIEEIHDCFAKQGAKP-VGFSNPDDYDYEESKSVRD--GKFLGLPLDMVNDQIPMEKRV 160

Query: 161 NAVVTQVLDELGL 173
              V  V+ E G+
Sbjct: 161 AGWVEAVVSETGV 173


>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 112

 Score = 25.6 bits (56), Expect = 2.6
 Identities = 7/48 (14%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 126 LQEFEKQSE-IMDMKEEMMNDAMDDAMDADEDEDETNAVVTQVLDELG 172
           L++  ++++  +D   + + +  +   D   D + ++ V+T  +   G
Sbjct: 10  LEKAHEEADDYLDHLLDSLEELSEAHPDCIPDVELSHGVMTLEIPAFG 57


>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii
           [TaxId: 5811]}
          Length = 350

 Score = 26.3 bits (56), Expect = 3.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 163 VVTQVLDELGLQLGDQLASIPDPASSMMSDKGKTPVAIPGGSGSN 207
           V +  LDE  L+ GD   + P+      +     P ++PGGS  N
Sbjct: 20  VPSSFLDEFFLKRGDATLATPEQMRIYSTLDQFNPTSLPGGSALN 64


>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal
          domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
          Length = 310

 Score = 25.4 bits (55), Expect = 6.4
 Identities = 5/22 (22%), Positives = 13/22 (59%)

Query: 36 MEQQEKKLIADIKKMAKEGQME 57
          +E+ +   +  ++ + K GQ+E
Sbjct: 58 IEENKPDYLDLLRSLIKRGQLE 79


>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
           toxin zeta subunit {Streptococcus pyogenes [TaxId:
           1314]}
          Length = 273

 Score = 24.9 bits (53), Expect = 9.4
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 1   MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKL 43
           +E    RK++ +E+    +R   K + +  +E    +  ++KL
Sbjct: 225 LEKELNRKVSGKEIQPTLERIEQKMVLNKHQETPEFKAIQQKL 267


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.126    0.339 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 831,275
Number of extensions: 37737
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 45
Length of query: 237
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 154
Effective length of database: 1,268,006
Effective search space: 195272924
Effective search space used: 195272924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.5 bits)