Query psy13383
Match_columns 105
No_of_seqs 105 out of 350
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 18:05:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3frt_A Charged multivesicular 99.9 2.4E-24 8.3E-29 165.3 7.1 81 7-91 4-84 (218)
2 2gd5_A Charged multivesicular 99.9 1.8E-22 6.2E-27 148.7 5.6 84 4-92 2-85 (179)
3 4dci_A Uncharacterized protein 81.1 0.79 2.7E-05 33.1 2.2 79 17-100 29-109 (150)
4 1yzm_A FYVE-finger-containing 78.8 4.4 0.00015 24.5 4.7 44 36-83 7-50 (51)
5 3lay_A Zinc resistance-associa 75.5 21 0.00071 25.9 8.5 61 12-81 73-133 (175)
6 1z0k_B FYVE-finger-containing 71.9 6.6 0.00023 25.0 4.4 44 36-83 25-68 (69)
7 2p22_A Suppressor protein STP2 69.6 8.9 0.0003 28.1 5.3 48 3-50 35-82 (174)
8 3frr_A Uncharacterized protein 65.9 37 0.0013 24.9 8.3 66 3-76 2-67 (191)
9 1t3j_A Mitofusin 1; coiled coi 63.4 30 0.001 23.1 6.5 37 12-48 42-78 (96)
10 3ibp_A Chromosome partition pr 54.9 59 0.002 25.9 7.9 52 9-61 62-113 (302)
11 2r6a_C DNAG primase, helicase 54.3 23 0.00079 22.8 4.7 38 36-77 103-140 (143)
12 1gp8_A Protein (scaffolding pr 54.1 5.1 0.00018 23.1 1.2 27 42-72 12-38 (40)
13 1upk_A MO25 protein; transfera 53.4 54 0.0018 26.3 7.5 70 1-73 3-77 (341)
14 2gd5_A Charged multivesicular 51.1 27 0.00093 24.7 5.0 29 13-41 17-45 (179)
15 3s4r_A Vimentin; alpha-helix, 48.2 15 0.00051 24.0 3.0 54 33-90 25-78 (93)
16 3v1a_A Computational design, M 46.9 35 0.0012 20.2 4.1 41 36-80 6-46 (48)
17 1z0j_B FYVE-finger-containing 44.2 47 0.0016 20.5 4.6 42 36-81 14-55 (59)
18 2vkl_A RV0948C/MT0975; helical 38.3 54 0.0019 20.9 4.5 34 20-53 15-48 (90)
19 2aze_B Transcription factor E2 38.3 43 0.0015 22.3 4.1 28 25-52 7-34 (106)
20 1go4_E MAD1 (mitotic arrest de 37.0 35 0.0012 23.0 3.4 41 20-60 15-55 (100)
21 3swk_A Vimentin; cytoskeleton, 35.7 50 0.0017 21.1 4.0 65 26-90 2-71 (86)
22 3ret_A Salicylate biosynthesis 35.4 63 0.0022 20.7 4.5 30 20-49 11-40 (101)
23 1ecm_A Endo-oxabicyclic transi 35.0 63 0.0022 20.8 4.5 29 21-49 9-37 (109)
24 2d8d_A Aroag, phospho-2-dehydr 35.0 68 0.0023 19.9 4.5 33 20-52 6-38 (90)
25 3ibp_A Chromosome partition pr 34.8 33 0.0011 27.3 3.5 35 2-42 266-300 (302)
26 3rmi_A Chorismate mutase prote 34.5 63 0.0022 21.4 4.5 37 19-55 14-50 (114)
27 1a93_B MAX protein, coiled coi 34.1 62 0.0021 17.9 4.5 26 23-48 6-31 (34)
28 3q4f_C DNA repair protein XRCC 33.5 1E+02 0.0035 22.9 5.8 40 7-46 144-183 (186)
29 3frt_A Charged multivesicular 31.9 89 0.003 23.3 5.3 32 12-43 16-47 (218)
30 3iv1_A Tumor susceptibility ge 30.9 1.1E+02 0.0037 19.7 6.5 40 13-52 28-67 (78)
31 3viq_A SWI5-dependent recombin 29.7 94 0.0032 21.2 4.8 34 21-54 4-37 (122)
32 1wle_A Seryl-tRNA synthetase; 28.3 1.5E+02 0.0051 24.6 6.6 34 22-55 75-108 (501)
33 1i6z_A BAG-family molecular ch 27.8 1.2E+02 0.0039 21.5 5.0 34 4-37 7-48 (135)
34 2dq0_A Seryl-tRNA synthetase; 27.5 2.4E+02 0.0084 22.8 7.9 52 22-73 36-88 (455)
35 1a92_A Delta antigen; leucine 26.7 1E+02 0.0036 18.3 4.0 33 12-45 3-35 (50)
36 3ol1_A Vimentin; structural ge 25.5 1.4E+02 0.0046 19.9 4.9 25 66-90 67-91 (119)
37 3he5_B Synzip2; heterodimeric 23.5 1.2E+02 0.0041 17.8 4.3 28 20-47 6-33 (52)
38 1jsu_C P27, KIP1, CIP2; comple 23.1 46 0.0016 21.5 2.1 18 4-22 10-27 (84)
39 2ke4_A CDC42-interacting prote 22.1 1.7E+02 0.0059 19.1 6.8 66 5-82 8-76 (98)
40 1y4c_A Maltose binding protein 22.1 1E+02 0.0034 24.7 4.3 49 8-56 354-415 (494)
41 3mq9_A Bone marrow stromal ant 20.6 3E+02 0.01 21.3 7.0 49 8-56 368-426 (471)
No 1
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=99.90 E-value=2.4e-24 Score=165.29 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=75.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHhHHHHHHHHHHHhchhhhhhhhccc
Q psy13383 7 RKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMTLSTERHVALLLEFVIIVGPENRENFENSD 86 (105)
Q Consensus 7 kk~tPkEqlRe~kr~LRk~~R~LDRei~~LereEkKl~~~IKk~AKkgd~~~aki~~~~LAKElVr~rK~~~Rl~~~ks~ 86 (105)
++|||+|++|+|+|.||+++|+|||++++|+++|++++.+||++||+||+++||| ||++|||+|+++.|+|.++|+
T Consensus 4 ~~~~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~ari----lAkelVR~Rk~~~rl~~~kaq 79 (218)
T 3frt_A 4 QEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIV----LAKEMIRSRKAVSKLYASKAH 79 (218)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred ccccc
Q psy13383 87 LRPQS 91 (105)
Q Consensus 87 l~~q~ 91 (105)
|++-+
T Consensus 80 L~sV~ 84 (218)
T 3frt_A 80 MNSVL 84 (218)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98643
No 2
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=99.86 E-value=1.8e-22 Score=148.74 Aligned_cols=84 Identities=19% Similarity=0.281 Sum_probs=75.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHhHHHHHHHHHHHhchhhhhhhh
Q psy13383 4 LFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMTLSTERHVALLLEFVIIVGPENRENFE 83 (105)
Q Consensus 4 lFgkk~tPkEqlRe~kr~LRk~~R~LDRei~~LereEkKl~~~IKk~AKkgd~~~aki~~~~LAKElVr~rK~~~Rl~~~ 83 (105)
+|+ +|||+|++|+|++.||+++|+|||++.+|+++|++++.+||++||+||.++||| ||+++||.|+++.++|.+
T Consensus 2 ~~~-~~~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki----~Ak~lvr~rk~~~~l~~~ 76 (179)
T 2gd5_A 2 AMA-EKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIV----LAKEMIRSRKAVSKLYAS 76 (179)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred CCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 566 599999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccccccccc
Q psy13383 84 NSDLRPQSN 92 (105)
Q Consensus 84 ks~l~~q~~ 92 (105)
+++|+..+.
T Consensus 77 ~a~l~~v~~ 85 (179)
T 2gd5_A 77 KAHMNSVLM 85 (179)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 3
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=81.11 E-value=0.79 Score=33.13 Aligned_cols=79 Identities=11% Similarity=0.243 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-chhH-hHHHHHHHHHHHhchhhhhhhhccccccccccc
Q psy13383 17 KNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMT-LSTE-RHVALLLEFVIIVGPENRENFENSDLRPQSNFF 94 (105)
Q Consensus 17 e~kr~LRk~~R~LDRei~~LereEkKl~~~IKk~AKkgd~~-~aki-~~~~LAKElVr~rK~~~Rl~~~ks~l~~q~~~~ 94 (105)
+....+...+..+|+|+.+|+.+.+++..+++ +.+... +..+ ......+ -+..+..+++..-+.+|..|-.++
T Consensus 29 ~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~---~q~~~~~~p~~~~qi~~iq--~q~~~ek~~r~e~k~~l~~ql~qv 103 (150)
T 4dci_A 29 EAEREISNGIANADQQLAQLEQEGQTVVDQVR---RQSANPLDPRVQEQVANIQ--QQVAGKRSELEEQKRNLLQQQAQV 103 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTSCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCCCCChhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999998886 433121 1110 0000111 133444555555566665555555
Q ss_pred eeEEee
Q psy13383 95 AVFTIG 100 (105)
Q Consensus 95 ~~~~~~ 100 (105)
-.|.+|
T Consensus 104 ~~L~lG 109 (150)
T 4dci_A 104 RELEMD 109 (150)
T ss_dssp HHSCTT
T ss_pred hcCCCc
Confidence 444444
No 4
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=78.81 E-value=4.4 Score=24.47 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCccchhHhHHHHHHHHHHHhchhhhhhhh
Q psy13383 36 MEQQEKKLIADIKKMAKEGQMTLSTERHVALLLEFVIIVGPENRENFE 83 (105)
Q Consensus 36 LereEkKl~~~IKk~AKkgd~~~aki~~~~LAKElVr~rK~~~Rl~~~ 83 (105)
|..+..-++..|++|.+.|..+.+.+ |...|=.+...+.++.++
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~----Le~NLrEL~~ei~~~~~~ 50 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRT----LQENLRQLQDEYDQQQTE 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHH----HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHH----HHHHHHHHHHHHHHHhcc
Confidence 45567778999999999999999999 999888888888877644
No 5
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=75.46 E-value=21 Score=25.94 Aligned_cols=61 Identities=7% Similarity=-0.043 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHhHHHHHHHHHHHhchhhhhh
Q psy13383 12 EEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMTLSTERHVALLLEFVIIVGPENREN 81 (105)
Q Consensus 12 kEqlRe~kr~LRk~~R~LDRei~~LereEkKl~~~IKk~AKkgd~~~aki~~~~LAKElVr~rK~~~Rl~ 81 (105)
++++++...+-+.+..+|..+ -.....++..+.-..+.|.++| ++|++|+..+|.+.....
T Consensus 73 q~ql~~I~~e~r~~~~~Lr~q-------l~akr~EL~aL~~a~~~DeakI--~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 73 QATAQKIYDDYYTQTSALRQQ-------LISKRYEYNALLTASSPDTAKI--NAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTSSSCCHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCCCCHHHH--HHHHHHHHHHHHHHHHHH
Confidence 455556656566665555333 3334456777777788888876 779999999887655443
No 6
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=71.89 E-value=6.6 Score=25.02 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCccchhHhHHHHHHHHHHHhchhhhhhhh
Q psy13383 36 MEQQEKKLIADIKKMAKEGQMTLSTERHVALLLEFVIIVGPENRENFE 83 (105)
Q Consensus 36 LereEkKl~~~IKk~AKkgd~~~aki~~~~LAKElVr~rK~~~Rl~~~ 83 (105)
|..+..-++..|++|.+.|..+.+.+ |...|=.+...+.++.++
T Consensus 25 L~EQ~~~I~~yI~qAk~~~r~DEV~t----Le~NLrEL~~ei~~~q~~ 68 (69)
T 1z0k_B 25 LLQQIHNITSFIRQAKAAGRMDEVRT----LQENLRQLQDEYDQQQTE 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHH----HHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHH----HHHHHHHHHHHHHHHhcc
Confidence 45566778999999999999999999 998888888887777643
No 7
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=69.61 E-value=8.9 Score=28.14 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=36.5
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13383 3 WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKM 50 (105)
Q Consensus 3 ~lFgkk~tPkEqlRe~kr~LRk~~R~LDRei~~LereEkKl~~~IKk~ 50 (105)
.+|.....-++-+|.-+..|.+....|+..+..|+++...+...|..+
T Consensus 35 ~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l 82 (174)
T 2p22_A 35 KILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVL 82 (174)
T ss_dssp HTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666667777888888888888888888888888877777776644
No 8
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=65.92 E-value=37 Score=24.94 Aligned_cols=66 Identities=11% Similarity=0.068 Sum_probs=51.1
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHhHHHHHHHHHHHhch
Q psy13383 3 WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMTLSTERHVALLLEFVIIVGP 76 (105)
Q Consensus 3 ~lFgkk~tPkEqlRe~kr~LRk~~R~LDRei~~LereEkKl~~~IKk~AKkgd~~~aki~~~~LAKElVr~rK~ 76 (105)
.+||++.++- ++|..|+=.+--|.=-.++-+..-++...+|=++-+.|+.+.|++ -+-.|++--..
T Consensus 2 ~mf~~~~~~~----K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~Ari----RvE~iI~ed~~ 67 (191)
T 3frr_A 2 HMLGSGFKAE----RLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARI----RVEHIIREDYL 67 (191)
T ss_dssp --CCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH----HHHHHHHHHHH
T ss_pred CcccCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH----HHHHHHHHHHH
Confidence 4788666653 788888888888877777778888889999999999999999999 66666655443
No 9
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=63.38 E-value=30 Score=23.12 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy13383 12 EEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIK 48 (105)
Q Consensus 12 kEqlRe~kr~LRk~~R~LDRei~~LereEkKl~~~IK 48 (105)
..++.....+|..++.+|+.+|..||......+..--
T Consensus 42 c~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRn 78 (96)
T 1t3j_A 42 CQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRN 78 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4677888888888888888888888887776665533
No 10
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=54.89 E-value=59 Score=25.86 Aligned_cols=52 Identities=12% Similarity=0.222 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhH
Q psy13383 9 ITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMTLSTE 61 (105)
Q Consensus 9 ~tPkEqlRe~kr~LRk~~R~LDRei~~LereEkKl~~~IKk~AKkgd~~~aki 61 (105)
+|..+..-..+..|.++ |++.-++.++...+..+..+|..++..|--+..+.
T Consensus 62 ~ds~~v~~~mq~~Le~E-re~~~~Rd~~a~~k~~Le~~ierLs~pgg~~dprL 113 (302)
T 3ibp_A 62 TSSQDVTEYLQQLLERE-REAIVERDEVGARKNAVDEEIERLSQPGGSEDQRL 113 (302)
T ss_dssp SSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCHHH
T ss_pred CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 56777778888999999 99999999999999999999999999776666654
No 11
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=54.30 E-value=23 Score=22.75 Aligned_cols=38 Identities=5% Similarity=-0.083 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCccchhHhHHHHHHHHHHHhchh
Q psy13383 36 MEQQEKKLIADIKKMAKEGQMTLSTERHVALLLEFVIIVGPE 77 (105)
Q Consensus 36 LereEkKl~~~IKk~AKkgd~~~aki~~~~LAKElVr~rK~~ 77 (105)
+.++-.++..+|..++..||.+.+-- ++.+|+.++++.
T Consensus 103 ~~r~l~~~~~~i~~~~~~~d~~~~l~----~~~el~~l~~~l 140 (143)
T 2r6a_C 103 KWLMLKVKEQEKTEAERRKDFLTAAR----IAKEMIEMKKML 140 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHH----HHHHHHHHHHhh
Confidence 44555567788888888888776665 899998887653
No 12
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=54.07 E-value=5.1 Score=23.14 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCccchhHhHHHHHHHHHH
Q psy13383 42 KLIADIKKMAKEGQMTLSTERHVALLLEFVI 72 (105)
Q Consensus 42 Kl~~~IKk~AKkgd~~~aki~~~~LAKElVr 72 (105)
-++++|--++..||.+.++. |-.+|-+
T Consensus 12 aiEQqiyvA~seGd~etv~~----Le~QL~~ 38 (40)
T 1gp8_A 12 AIRKQMDAAASKGDVETYRK----LKAKLKG 38 (40)
T ss_dssp HHHHHHHHHHTTSCHHHHHH----HHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHH----HHHHHHh
Confidence 35678889999999999998 8777633
No 13
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=53.44 E-value=54 Score=26.31 Aligned_cols=70 Identities=14% Similarity=0.262 Sum_probs=31.3
Q ss_pred CccccCCC-CCHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHH-hcCccchhHhHHHHHHHHHHH
Q psy13383 1 MEWLFGRK-ITPEEMLRKNQRALNKAMRDLD---REKQHMEQQEKKLIADIKKMAK-EGQMTLSTERHVALLLEFVII 73 (105)
Q Consensus 1 M~~lFgkk-~tPkEqlRe~kr~LRk~~R~LD---Rei~~LereEkKl~~~IKk~AK-kgd~~~aki~~~~LAKElVr~ 73 (105)
|+ ||++ +||.|.+|..+-.|-+=. +-. +.-.+.+.+=.|...+||..-= .|+.++.--.+..||.|+.+.
T Consensus 3 m~--F~~~~ktP~elVr~l~d~l~~l~-~~~~~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~ 77 (341)
T 1upk_A 3 FP--FGKSHKSPADIVKNLKESMAVLE-KQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNS 77 (341)
T ss_dssp ---------CCHHHHHHHHHHHHHHHH-C---CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHH
T ss_pred CC--CCCCCCCHHHHHHHHHHHHHHHh-ccccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHh
Confidence 55 8864 689999998777665332 110 1112233333444555555443 223333333445588888764
No 14
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=51.12 E-value=27 Score=24.67 Aligned_cols=29 Identities=28% Similarity=0.586 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy13383 13 EMLRKNQRALNKAMRDLDREKQHMEQQEK 41 (105)
Q Consensus 13 EqlRe~kr~LRk~~R~LDRei~~LereEk 41 (105)
-.+|...|.|.+..+.|+++-.++..+=+
T Consensus 17 ~~L~~~~r~Ldr~~~kle~~ekk~~~~Ik 45 (179)
T 2gd5_A 17 LKIRKEMRVVDRQIRDIQREEEKVKRSVK 45 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777766654433
No 15
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=48.17 E-value=15 Score=23.98 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccchhHhHHHHHHHHHHHhchhhhhhhhccccccc
Q psy13383 33 KQHMEQQEKKLIADIKKMAKEGQMTLSTERHVALLLEFVIIVGPENRENFENSDLRPQ 90 (105)
Q Consensus 33 i~~LereEkKl~~~IKk~AKkgd~~~aki~~~~LAKElVr~rK~~~Rl~~~ks~l~~q 90 (105)
.+.||.+-+.++.+|...-.++-....- .|-.+|-..|+++.-+...+++|..+
T Consensus 25 VR~LEqqN~~Le~~i~~l~~~~~~~~~~----~ye~~i~~Lr~~i~~~~~ek~~l~~e 78 (93)
T 3s4r_A 25 VRFLEQQNKILLAELEQLKGQGKSRLGD----LYEEEMRELRRQVDQLTNDKARVEVE 78 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777665544222222 27788889999999988888877654
No 16
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=46.86 E-value=35 Score=20.20 Aligned_cols=41 Identities=17% Similarity=0.149 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCccchhHhHHHHHHHHHHHhchhhhh
Q psy13383 36 MEQQEKKLIADIKKMAKEGQMTLSTERHVALLLEFVIIVGPENRE 80 (105)
Q Consensus 36 LereEkKl~~~IKk~AKkgd~~~aki~~~~LAKElVr~rK~~~Rl 80 (105)
|..+..-++..|++|.+.|..+.+.+ |-+.|=.+...+.++
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~----L~~NL~EL~~E~~~~ 46 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRT----LQENLHQLMHEYFQQ 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHH----HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHH----HHHHHHHHHHHHHhh
Confidence 45566778899999999999999998 888877666665554
No 17
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=44.18 E-value=47 Score=20.45 Aligned_cols=42 Identities=14% Similarity=0.066 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCccchhHhHHHHHHHHHHHhchhhhhh
Q psy13383 36 MEQQEKKLIADIKKMAKEGQMTLSTERHVALLLEFVIIVGPENREN 81 (105)
Q Consensus 36 LereEkKl~~~IKk~AKkgd~~~aki~~~~LAKElVr~rK~~~Rl~ 81 (105)
|..|---++..|++|.+.|..|.+-+ |...|=.+...+.++.
T Consensus 14 L~EQi~~I~~yI~qAk~~~R~DEV~~----Le~NLrEL~~ei~~~~ 55 (59)
T 1z0j_B 14 LLQQIDNIKAYIFDAKQCGRLDEVEV----LTENLRELKHTLAKQK 55 (59)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHH----HHHHHHHHHHHHHHHh
Confidence 44556678899999999999999998 8887766666666554
No 18
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=38.32 E-value=54 Score=20.87 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=28.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13383 20 RALNKAMRDLDREKQHMEQQEKKLIADIKKMAKE 53 (105)
Q Consensus 20 r~LRk~~R~LDRei~~LereEkKl~~~IKk~AKk 53 (105)
..||.++-+||+++-.|=.+...+..+|=..=+.
T Consensus 15 ~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~ 48 (90)
T 2vkl_A 15 DTLREEIDRLDAEILALVKRRAEVSKAIGKARMA 48 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999888888887655443
No 19
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=38.26 E-value=43 Score=22.30 Aligned_cols=28 Identities=11% Similarity=0.250 Sum_probs=19.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13383 25 AMRDLDREKQHMEQQEKKLIADIKKMAK 52 (105)
Q Consensus 25 ~~R~LDRei~~LereEkKl~~~IKk~AK 52 (105)
..+.|..|+.+|+.+|+.+-..|+.+..
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i~~~~~ 34 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLMNICTT 34 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777776543
No 20
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.99 E-value=35 Score=22.95 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=33.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchh
Q psy13383 20 RALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMTLST 60 (105)
Q Consensus 20 r~LRk~~R~LDRei~~LereEkKl~~~IKk~AKkgd~~~ak 60 (105)
..|++.+-.|++|...|..+-..++.++-...=+||.++.+
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~ 55 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSR 55 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcc
Confidence 45778888899999999999999999987776789876643
No 21
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=35.74 E-value=50 Score=21.07 Aligned_cols=65 Identities=11% Similarity=0.142 Sum_probs=37.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhH-----hHHHHHHHHHHHhchhhhhhhhccccccc
Q psy13383 26 MRDLDREKQHMEQQEKKLIADIKKMAKEGQMTLSTE-----RHVALLLEFVIIVGPENRENFENSDLRPQ 90 (105)
Q Consensus 26 ~R~LDRei~~LereEkKl~~~IKk~AKkgd~~~aki-----~~~~LAKElVr~rK~~~Rl~~~ks~l~~q 90 (105)
+++|-+++-.+..+..++..+|..+.-.-+.=-.|. .--..=-+++.+||-++=.|.+++.|..+
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~k 71 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERK 71 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455566666666666666666655432111000000 11134467899999999999988887654
No 22
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=35.43 E-value=63 Score=20.67 Aligned_cols=30 Identities=7% Similarity=0.160 Sum_probs=23.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy13383 20 RALNKAMRDLDREKQHMEQQEKKLIADIKK 49 (105)
Q Consensus 20 r~LRk~~R~LDRei~~LereEkKl~~~IKk 49 (105)
..||.++-+||+++-.|=.+...+..+|=.
T Consensus 11 ~~lR~~ID~iD~~il~LL~~R~~~~~~i~~ 40 (101)
T 3ret_A 11 ADIREAIDRIDLDIVQALGRRMDYVKAASR 40 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999987777776666543
No 23
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=35.03 E-value=63 Score=20.80 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=22.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy13383 21 ALNKAMRDLDREKQHMEQQEKKLIADIKK 49 (105)
Q Consensus 21 ~LRk~~R~LDRei~~LereEkKl~~~IKk 49 (105)
.||.++-+||+++-.|=.+...+..+|=.
T Consensus 9 ~lR~~ID~iD~~L~~LL~~R~~~~~~v~~ 37 (109)
T 1ecm_A 9 ALREKISALDEKLLALLAERRELAVEVGK 37 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999887766666665533
No 24
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=34.97 E-value=68 Score=19.93 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=26.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13383 20 RALNKAMRDLDREKQHMEQQEKKLIADIKKMAK 52 (105)
Q Consensus 20 r~LRk~~R~LDRei~~LereEkKl~~~IKk~AK 52 (105)
..||.++-+||+++-.|=.+...+..+|=..=+
T Consensus 6 ~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~ 38 (90)
T 2d8d_A 6 QALRKEVDRVNREILRLLSERGRLVQEIGRLQT 38 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999998888888877755443
No 25
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=34.83 E-value=33 Score=27.29 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=21.5
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy13383 2 EWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKK 42 (105)
Q Consensus 2 ~~lFgkk~tPkEqlRe~kr~LRk~~R~LDRei~~LereEkK 42 (105)
+..|- +||++.+++ ++....+|+|++..++.++.+
T Consensus 266 ~vaF~--~dPe~~l~~----~~~~~~~~~r~l~~~~~~~qq 300 (302)
T 3ibp_A 266 AVAFE--SDPEAEIRQ----LNSRRVELERALSNHENDNQQ 300 (302)
T ss_dssp TTSSS--CCHHHHHHH----HHHHHHHHHHHHHC-------
T ss_pred hhhcC--CCHHHHHHH----HHHHHHHHHHHHHHHHhhhhh
Confidence 44565 999999976 455677899998888777654
No 26
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=34.53 E-value=63 Score=21.44 Aligned_cols=37 Identities=11% Similarity=0.148 Sum_probs=28.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13383 19 QRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQ 55 (105)
Q Consensus 19 kr~LRk~~R~LDRei~~LereEkKl~~~IKk~AKkgd 55 (105)
=..||..+-+||+++-.|=.+...+..+|=..=+..+
T Consensus 14 L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~~~ 50 (114)
T 3rmi_A 14 LAYLRQSIDNFDITLIHILAERFRCTQAIGRLKARYN 50 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3579999999999999998888887777765544433
No 27
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=34.13 E-value=62 Score=17.90 Aligned_cols=26 Identities=8% Similarity=0.219 Sum_probs=15.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy13383 23 NKAMRDLDREKQHMEQQEKKLIADIK 48 (105)
Q Consensus 23 Rk~~R~LDRei~~LereEkKl~~~IK 48 (105)
|+..-...-||..|+++-..|+.+|+
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 34444455566666666666666665
No 28
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=33.47 E-value=1e+02 Score=22.92 Aligned_cols=40 Identities=15% Similarity=0.356 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy13383 7 RKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIAD 46 (105)
Q Consensus 7 kk~tPkEqlRe~kr~LRk~~R~LDRei~~LereEkKl~~~ 46 (105)
+-++|.|.+|+.=.--=..+-+|.+++.+|+.+-..|..+
T Consensus 144 ~V~nPaE~irELi~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 144 KVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp ECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999876666666777777777777776666543
No 29
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=31.94 E-value=89 Score=23.26 Aligned_cols=32 Identities=25% Similarity=0.526 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy13383 12 EEMLRKNQRALNKAMRDLDREKQHMEQQEKKL 43 (105)
Q Consensus 12 kEqlRe~kr~LRk~~R~LDRei~~LereEkKl 43 (105)
+-.||...|.|.++++.|+++-.++...=++.
T Consensus 16 ~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKka 47 (218)
T 3frt_A 16 SLKIRKEMRVVDRQIRDIQREEEKVKRSVKDA 47 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888888877766544443
No 30
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=30.85 E-value=1.1e+02 Score=19.68 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13383 13 EMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAK 52 (105)
Q Consensus 13 EqlRe~kr~LRk~~R~LDRei~~LereEkKl~~~IKk~AK 52 (105)
+-+|..+-+|+...-.|+.=+.+|++++..+...|-.+=.
T Consensus 28 ~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~ 67 (78)
T 3iv1_A 28 NALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKK 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577888888999999999999999999999888865543
No 31
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=29.71 E-value=94 Score=21.23 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=22.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13383 21 ALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEG 54 (105)
Q Consensus 21 ~LRk~~R~LDRei~~LereEkKl~~~IKk~AKkg 54 (105)
.|.+..+.|+++++.++.+=..+++.++-..+..
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~ 37 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETARKVEAKNE 37 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4667777777777777776666666555544443
No 32
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=28.27 E-value=1.5e+02 Score=24.56 Aligned_cols=34 Identities=9% Similarity=0.297 Sum_probs=25.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13383 22 LNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQ 55 (105)
Q Consensus 22 LRk~~R~LDRei~~LereEkKl~~~IKk~AKkgd 55 (105)
|...-|++..+...|+.+.+.+-++|.++.+.|+
T Consensus 75 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~ 108 (501)
T 1wle_A 75 TWQELRQLREQIRSLEEEKEAVTEAVRALVVNQD 108 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 4455667777788888888899999998777664
No 33
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=27.83 E-value=1.2e+02 Score=21.47 Aligned_cols=34 Identities=29% Similarity=0.538 Sum_probs=21.5
Q ss_pred ccCCCCCHHH-----HHHHHHHHHHH---HHhhHHHHHHHHH
Q psy13383 4 LFGRKITPEE-----MLRKNQRALNK---AMRDLDREKQHME 37 (105)
Q Consensus 4 lFgkk~tPkE-----qlRe~kr~LRk---~~R~LDRei~~Le 37 (105)
+.|++++|+| .++.+.....+ ...+++.++..|+
T Consensus 7 viGkK~~peee~~lKkL~dveksv~~~~k~l~~l~~el~~ie 48 (135)
T 1i6z_A 7 LIGEKSNPEEEVELKKLKDLEVSAEKIANHLQELNKELSGIQ 48 (135)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999984 34444444444 5666666666664
No 34
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.54 E-value=2.4e+02 Score=22.76 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=33.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cchhHhHHHHHHHHHHH
Q psy13383 22 LNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM-TLSTERHVALLLEFVII 73 (105)
Q Consensus 22 LRk~~R~LDRei~~LereEkKl~~~IKk~AKkgd~-~~aki~~~~LAKElVr~ 73 (105)
|...-|++..++..|+.+.+.+-++|.++.+.|+. +..+-.++.+..+|-.+
T Consensus 36 l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~ 88 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGEL 88 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHH
Confidence 45566777778888889999999999987666632 22233444444444433
No 35
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=26.71 E-value=1e+02 Score=18.31 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy13383 12 EEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIA 45 (105)
Q Consensus 12 kEqlRe~kr~LRk~~R~LDRei~~LereEkKl~~ 45 (105)
+|.+-+|-. -|+..++|+|+.++....=++++-
T Consensus 3 ee~LeqWv~-~Rkk~eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 3 EDILEQWVS-GRKKLEELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 355556632 356667777777766655555543
No 36
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=25.51 E-value=1.4e+02 Score=19.91 Aligned_cols=25 Identities=8% Similarity=0.007 Sum_probs=19.2
Q ss_pred HHHHHHHHhchhhhhhhhccccccc
Q psy13383 66 LLLEFVIIVGPENRENFENSDLRPQ 90 (105)
Q Consensus 66 LAKElVr~rK~~~Rl~~~ks~l~~q 90 (105)
.=-+++.+||.++-.+.+++.|..+
T Consensus 67 ~E~di~~lrK~lD~~~l~r~dLE~~ 91 (119)
T 3ol1_A 67 AENTLQSFRQDVDNASLARLDLERK 91 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHH
Confidence 3457889999999888888877543
No 37
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.49 E-value=1.2e+02 Score=17.82 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=18.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy13383 20 RALNKAMRDLDREKQHMEQQEKKLIADI 47 (105)
Q Consensus 20 r~LRk~~R~LDRei~~LereEkKl~~~I 47 (105)
.-||+.+-.|..+--+|++.|..++.-|
T Consensus 6 aylrkkiarlkkdnlqlerdeqnlekii 33 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQNLEKII 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhHHHHH
Confidence 3466666677777777777776665544
No 38
>1jsu_C P27, KIP1, CIP2; complex (transferase/cyclin/inhibitor), kinase, cell cycle, cell division, CDK, cyclin, inhibitor; HET: TPO; 2.30A {Homo sapiens} SCOP: j.55.1.1
Probab=23.06 E-value=46 Score=21.48 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=12.4
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q psy13383 4 LFGRKITPEEMLRKNQRAL 22 (105)
Q Consensus 4 lFgkk~tPkEqlRe~kr~L 22 (105)
||| .+|+.|.-+.....|
T Consensus 10 LFG-~vd~eEl~~~f~~~l 27 (84)
T 1jsu_C 10 LFG-PVDHEELTRDLEKHC 27 (84)
T ss_dssp SSC-CCCHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHHHH
Confidence 899 589977655555544
No 39
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=22.10 E-value=1.7e+02 Score=19.09 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=37.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh---cCccchhHhHHHHHHHHHHHhchhhhhh
Q psy13383 5 FGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKE---GQMTLSTERHVALLLEFVIIVGPENREN 81 (105)
Q Consensus 5 Fgkk~tPkEqlRe~kr~LRk~~R~LDRei~~LereEkKl~~~IKk~AKk---gd~~~aki~~~~LAKElVr~rK~~~Rl~ 81 (105)
|+ ...|+..-+..++.|..-..+|+++...- .=+...+.-..+. ||..++ +-+|..+.+.+++|-
T Consensus 8 ~s-~LPpeqRkkkL~~Ki~el~~ei~ke~~~r----egl~Km~~vY~~nP~~GD~~s~-------~~~L~e~~~kid~L~ 75 (98)
T 2ke4_A 8 FS-HLPPEQQRKRLQQQLEERSRELQKEVDQR----EALKKMKDVYEKTPQMGDPASL-------EPQIAETLSNIERLK 75 (98)
T ss_dssp SS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHCGGGCCGGGS-------HHHHHHHHHHHHHHH
T ss_pred hc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCCccCCHHHH-------HHHHHHHHHHHHHHH
Confidence 54 36787777777777766666666665554 4444555555444 454544 445555555555544
Q ss_pred h
Q psy13383 82 F 82 (105)
Q Consensus 82 ~ 82 (105)
+
T Consensus 76 ~ 76 (98)
T 2ke4_A 76 L 76 (98)
T ss_dssp H
T ss_pred H
Confidence 3
No 40
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=22.08 E-value=1e+02 Score=24.71 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhHHH------------HHHHHHHHH-HHHHHHHHHHHHhcCc
Q psy13383 8 KITPEEMLRKNQRALNKAMRDLDR------------EKQHMEQQE-KKLIADIKKMAKEGQM 56 (105)
Q Consensus 8 k~tPkEqlRe~kr~LRk~~R~LDR------------ei~~LereE-kKl~~~IKk~AKkgd~ 56 (105)
..||+|.+.+.+..+.....+.++ |+-+|--+| .|+.++...+||+|--
T Consensus 354 ~~tpeeAl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (494)
T 1y4c_A 354 RQTVDEALKDAQTNSSSNNNNNNNNNNLGIEGRSSEELLKIALQEAQKTLQQAQELAKKGGG 415 (494)
T ss_dssp SSCHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCHHHHHHHHHHHHHHHHhccCCccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 579999999999999888877766 666665544 4566667777777653
No 41
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.63 E-value=3e+02 Score=21.30 Aligned_cols=49 Identities=18% Similarity=0.214 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHHHHHHHHHHhcCc
Q psy13383 8 KITPEEMLRKNQRALNKAMRDLDRE----------KQHMEQQEKKLIADIKKMAKEGQM 56 (105)
Q Consensus 8 k~tPkEqlRe~kr~LRk~~R~LDRe----------i~~LereEkKl~~~IKk~AKkgd~ 56 (105)
..||++.+.+....+.....++-.+ .++|.+-++.+-+-=++++-+|..
T Consensus 368 ~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (471)
T 3mq9_A 368 RQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHT 426 (471)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchh
Confidence 5799999999888888776665554 345666666766666677666654
Done!