Query psy13383
Match_columns 105
No_of_seqs 105 out of 350
Neff 4.6
Searched_HMMs 13730
Date Fri Aug 16 18:05:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13383.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13383hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2csga1 b.82.2.12 (A:3-419) Hy 54.3 17 0.0012 27.8 6.8 47 9-55 10-56 (417)
2 d2h9da1 a.130.1.1 (A:1-94) Sal 44.4 14 0.001 22.1 4.0 31 20-50 11-41 (94)
3 d256ba_ a.24.3.1 (A:) Cytochro 43.2 8.7 0.00063 23.9 2.9 32 45-80 73-104 (106)
4 d2azeb1 e.63.1.2 (B:201-301) T 40.6 22 0.0016 22.1 4.5 26 27-52 4-29 (101)
5 d1q08a_ a.6.1.3 (A:) Transcrip 38.1 31 0.0023 20.4 4.9 46 16-61 38-84 (94)
6 d1ecma_ a.130.1.1 (A:) Chorism 37.1 35 0.0025 19.7 5.8 36 20-55 4-39 (91)
7 d2d8da1 a.130.1.1 (A:3-82) Cho 34.3 37 0.0027 19.2 5.4 36 20-55 4-39 (80)
8 d1ybza1 a.130.1.1 (A:2-75) mon 33.7 38 0.0028 19.2 5.8 37 20-56 4-40 (74)
9 d2gyqa1 a.25.1.4 (A:1-160) Hyp 32.9 61 0.0044 21.2 8.1 65 1-83 1-66 (160)
10 d1seta1 a.2.7.1 (A:1-110) Sery 21.6 54 0.0039 19.5 3.8 28 22-49 33-60 (110)
No 1
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]}
Probab=54.30 E-value=17 Score=27.84 Aligned_cols=47 Identities=19% Similarity=0.366 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13383 9 ITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQ 55 (105)
Q Consensus 9 ~tPkEqlRe~kr~LRk~~R~LDRei~~LereEkKl~~~IKk~AKkgd 55 (105)
+|+....++.|+.||....++..--.+|+..=++-..+|+...+.|.
T Consensus 10 ~dl~~~i~~~K~~Lr~~~~~~~~~f~~l~~~i~~ev~eI~~l~~~G~ 56 (417)
T d2csga1 10 ADPKAAIRQMKQALRAQIGDVQAVFDRLSATIAARVAEINDLKAQGQ 56 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CChHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 57889999999999999999999999998888888889988877764
No 2
>d2h9da1 a.130.1.1 (A:1-94) Salicylate biosynthesis protein PchB {Pseudomonas aeruginosa [TaxId: 287]}
Probab=44.44 E-value=14 Score=22.09 Aligned_cols=31 Identities=6% Similarity=0.172 Sum_probs=26.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13383 20 RALNKAMRDLDREKQHMEQQEKKLIADIKKM 50 (105)
Q Consensus 20 r~LRk~~R~LDRei~~LereEkKl~~~IKk~ 50 (105)
..||+.+-.||+++-.|=.+..++..+|-..
T Consensus 11 ~~lR~~ID~ID~~i~~LL~~R~~l~~~i~~~ 41 (94)
T d2h9da1 11 ADIREAIDRIDLDIVQALGRRMDYVKAASRF 41 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999988888888887555
No 3
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=43.21 E-value=8.7 Score=23.89 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCccchhHhHHHHHHHHHHHhchhhhh
Q psy13383 45 ADIKKMAKEGQMTLSTERHVALLLEFVIIVGPENRE 80 (105)
Q Consensus 45 ~~IKk~AKkgd~~~aki~~~~LAKElVr~rK~~~Rl 80 (105)
..|..+|..|+.+.|+. ++.+|-.+|+.+-+-
T Consensus 73 d~i~~la~~G~l~eAk~----~l~~l~~~r~~YHkk 104 (106)
T d256ba_ 73 DDALKLANEGKVKEAQA----AAEQLKTTRNAYHQK 104 (106)
T ss_dssp HHHHHHHHTTCHHHHHH----HHTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHH----HHHHHHHHHHHHhhh
Confidence 45778999999999998 999999999876543
No 4
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.61 E-value=22 Score=22.05 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13383 27 RDLDREKQHMEQQEKKLIADIKKMAK 52 (105)
Q Consensus 27 R~LDRei~~LereEkKl~~~IKk~AK 52 (105)
..|..|+.+|+.+|+.+-..|+.+..
T Consensus 4 ~~L~~El~~L~~~E~~LD~li~~~~~ 29 (101)
T d2azeb1 4 EGLTQDLRQLQESEQQLDHLMNICTT 29 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777666666543
No 5
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=38.05 E-value=31 Score=20.36 Aligned_cols=46 Identities=2% Similarity=0.121 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccchhH
Q psy13383 16 RKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQ-MTLSTE 61 (105)
Q Consensus 16 Re~kr~LRk~~R~LDRei~~LereEkKl~~~IKk~AKkgd-~~~aki 61 (105)
.++++.+.....+||..|..|++.+..+...+..+.-.++ ...|-|
T Consensus 38 ~~v~~l~~~kl~~i~~kI~~L~~l~~~L~~l~~~c~~~~~~~~~C~i 84 (94)
T d1q08a_ 38 QESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGTAHSSVYCSI 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSBGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCcc
Confidence 4456778999999999999999988888776655532222 223776
No 6
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]}
Probab=37.15 E-value=35 Score=19.73 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=29.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13383 20 RALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQ 55 (105)
Q Consensus 20 r~LRk~~R~LDRei~~LereEkKl~~~IKk~AKkgd 55 (105)
..||+++-+||+++-.|=.+...+..+|-..=+.++
T Consensus 4 ~~lR~~ID~iD~~i~~Ll~~R~~l~~~I~~~K~~~~ 39 (91)
T d1ecma_ 4 LALREKISALDEKLLALLAERRELAVEVGKAKLLSH 39 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 368999999999999998888888888876654444
No 7
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=34.34 E-value=37 Score=19.21 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=30.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13383 20 RALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQ 55 (105)
Q Consensus 20 r~LRk~~R~LDRei~~LereEkKl~~~IKk~AKkgd 55 (105)
..||.++-+||+++-.|=.+...+..+|-..-+..+
T Consensus 4 ~~lR~~ID~iD~~i~~Ll~~R~~~~~~i~~~K~~~~ 39 (80)
T d2d8da1 4 QALRKEVDRVNREILRLLSERGRLVQEIGRLQTELG 39 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 368999999999999999888888888877655544
No 8
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase {Pyrococcus furiosus [TaxId: 2261]}
Probab=33.72 E-value=38 Score=19.19 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=31.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy13383 20 RALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56 (105)
Q Consensus 20 r~LRk~~R~LDRei~~LereEkKl~~~IKk~AKkgd~ 56 (105)
..||..+-+||+++-.|=.+...+..+|-..=+..+.
T Consensus 4 ~~lR~~ID~iD~~i~~Ll~~R~~~~~~I~~~K~~~~~ 40 (74)
T d1ybza1 4 KLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKELNL 40 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3689999999999999999999999998777555543
No 9
>d2gyqa1 a.25.1.4 (A:1-160) Hypothetical ptotein RPA3308 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=32.87 E-value=61 Score=21.24 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=44.5
Q ss_pred CccccCCC-CCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHhHHHHHHHHHHHhchhhh
Q psy13383 1 MEWLFGRK-ITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMTLSTERHVALLLEFVIIVGPENR 79 (105)
Q Consensus 1 M~~lFgkk-~tPkEqlRe~kr~LRk~~R~LDRei~~LereEkKl~~~IKk~AKkgd~~~aki~~~~LAKElVr~rK~~~R 79 (105)
|+ ||.+. .|+++..=+|=+ ++=--|+++...+.+++++-.....+- .|..-+-..++|+.|
T Consensus 1 m~-~~~~~~~tl~dlfi~~L~--------------d~y~aE~q~~~al~~m~~~a~~peLk~---~l~~H~~eT~~qi~r 62 (160)
T d2gyqa1 1 MG-FFSRDIQTMEDLLLHGLR--------------DIYYAEQQITKALPKMIEQATNRDLSQ---GLTSHLEETQKQIER 62 (160)
T ss_dssp CC-TTTTCBCSHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHCCSHHHHH---HHHHHHHHHHHHHHH
T ss_pred Cc-ccccccccHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhCCHHHHH---HHHHHHHHHHHHHHH
Confidence 77 66643 467776655433 344557788888888888776655554 477888888889988
Q ss_pred hhhh
Q psy13383 80 ENFE 83 (105)
Q Consensus 80 l~~~ 83 (105)
|-..
T Consensus 63 Le~i 66 (160)
T d2gyqa1 63 LDQV 66 (160)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8643
No 10
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=21.56 E-value=54 Score=19.49 Aligned_cols=28 Identities=14% Similarity=0.442 Sum_probs=16.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy13383 22 LNKAMRDLDREKQHMEQQEKKLIADIKK 49 (105)
Q Consensus 22 LRk~~R~LDRei~~LereEkKl~~~IKk 49 (105)
|...-|++..++..|..+.+.+-.+|.+
T Consensus 33 ld~~rr~l~~~~e~l~~~rN~~sk~i~k 60 (110)
T d1seta1 33 LDREVQELKKRLQEVQTERNQVAKRVPK 60 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666653
Done!