RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13383
         (105 letters)



>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase,
          beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
          Length = 401

 Score = 25.0 bits (54), Expect = 1.9
 Identities = 7/37 (18%), Positives = 18/37 (48%)

Query: 31 REKQHMEQQEKKLIADIKKMAKEGQMTLSTERHVALL 67
           E+  +E++ +++ +  K      ++ L  E+H   L
Sbjct: 26 IEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFHYL 62


>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
           toxin zeta subunit {Streptococcus pyogenes [TaxId:
           1314]}
          Length = 273

 Score = 24.5 bits (52), Expect = 2.8
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 1   MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKL 43
           +E    RK++ +E+    +R   K + +  +E    +  ++KL
Sbjct: 225 LEKELNRKVSGKEIQPTLERIEQKMVLNKHQETPEFKAIQQKL 267


>d1vk3a4 d.139.1.1 (A:508-603) Phosphoribosylformylglycinamidine
          synthase II, domains 2 and 4 {Thermotoga maritima
          [TaxId: 2336]}
          Length = 96

 Score = 23.8 bits (51), Expect = 3.9
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 10/55 (18%)

Query: 38 QQEKKLIADIKKMAKEGQMTLSTERHVALLLEFVIIVGPENRENFENSDLRPQSN 92
          ++EK+L   I+K+++EG   LS+ + +             + E F    L+ +  
Sbjct: 19 EREKELWRAIRKLSEEGAFILSSSQLLTR----------THVETFREYGLKIEVK 63


>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal
          domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
          Length = 310

 Score = 24.3 bits (52), Expect = 4.3
 Identities = 4/29 (13%), Positives = 13/29 (44%)

Query: 36 MEQQEKKLIADIKKMAKEGQMTLSTERHV 64
          +E+ +   +  ++ + K GQ+ +      
Sbjct: 58 IEENKPDYLDLLRSLIKRGQLEIVVAGFY 86


>d2a8ea1 d.296.1.1 (A:2-211) Hypothetical protein YktB {Bacillus
           subtilis [TaxId: 1423]}
          Length = 210

 Score = 23.2 bits (50), Expect = 7.0
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 2   EWLFGRKITPEEMLRKNQRALNKAMRD 28
           E L G ++  EE+L  N +   + + D
Sbjct: 167 ELLCGIQLQKEEVLNMNNQEFLQRIDD 193


>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
          synthase, DHBP synthase, RibB {Archaeon
          Methanocaldococcus jannaschii [TaxId: 2190]}
          Length = 219

 Score = 23.0 bits (49), Expect = 9.3
 Identities = 3/13 (23%), Positives = 7/13 (53%)

Query: 69 EFVIIVGPENREN 81
          E +++   + RE 
Sbjct: 14 EIILVYDSDEREG 26


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.368 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 377,366
Number of extensions: 15417
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 22
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)