BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13386
(714 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 384
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 127/294 (43%), Gaps = 54/294 (18%)
Query: 96 QRTNHFPLIMELCRKNLLAK------NLNQMKIQYPNDYNFFPQTWILP----------- 138
Q N++ +LCRK L K L++ +P Y +P P
Sbjct: 60 QLVNYYRGADKLCRKASLVKLIKTSPELSESCTWFPESYVIYPTNLKTPVAPAQNGIRHL 119
Query: 139 -----RDNREVHAFLTS-------KKATV-IVKPDNGSNGLGI---SLIRNLRHLSQEQN 182
D REV FL + ++ V I K G+ G GI S L EQ
Sbjct: 120 INNTRTDEREV--FLAAYNRRREGREGNVWIAKSSAGAKGEGILISSEASELLDFIDEQG 177
Query: 183 RNYICQEYIANPFLID--GLKFDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGN 240
+ ++ Q+Y+ P L++ KFD+R + L+ IY++++G++R ++ Y N
Sbjct: 178 QVHVIQKYLEKPLLLEPGHRKFDIRSWVLVDHL--YNIYLYREGVLRTSSEPY---NSAN 232
Query: 241 LTNKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQWFCRMGYDTDL---VWSRIDDVI 297
+K HLTN+ + K E G++ NQ+ +T L + +I +I
Sbjct: 233 FQDKTCHLTNHCIQKEYSKNYGRYEEGNEMFFEEFNQYLMD-ALNTTLENSILLQIKHII 291
Query: 298 VKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPS 351
++ P I T +H + + FQL GFD ++D+ L +++EVN +P+
Sbjct: 292 RSCLMCIEPAIST-------KHLHYQS-FQLFGFDFMVDEELKVWLIEVNGAPA 337
>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|B Chain B, Tubulin Tyrosine Ligase
pdb|3TIN|A Chain A, Tubulin Tyrosine Ligase
Length = 380
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 24/205 (11%)
Query: 156 IVKPDNGSNGLGI---SLIRNLRHLSQEQNRNYICQEYIANPFLID--GLKFDMRVYTLI 210
I K +G+ G GI S L Q + ++ Q+Y+ +P L++ KFD+R + L+
Sbjct: 151 IAKSSSGAKGEGILISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLV 210
Query: 211 TSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVNK-HSISFIHDEEVGSK 269
+ IY++++G++R ++ Y ++T+ HLTN+ + K HS ++ EE G++
Sbjct: 211 D--NQYNIYLYREGVLRTSSEPYSDTNFQDMTS---HLTNHCIQKEHSKNYGRYEE-GNE 264
Query: 270 RKISTINQWFCRMGYDTDL---VWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACF 326
NQ+ + +L + +I ++I + P I T Y P H+ F
Sbjct: 265 MFFEEFNQYLV-TSLNINLENSILCQIKEIIRVCLSCLEPAISTKY---LPYHS-----F 315
Query: 327 QLLGFDILLDDTLNPYVLEVNHSPS 351
QL GFD ++D L +++EVN +P+
Sbjct: 316 QLFGFDFMVDKNLKVWLIEVNGAPA 340
>pdb|3F41|A Chain A, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
pdb|3F41|B Chain B, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
Length = 629
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 459 NMRSMLGRAHRQDIDMRRDNHGVTPRPSKDTLDSIY 494
N R+M A R D+++++ G TP P++ LD++Y
Sbjct: 352 NFRTM-NSAFRTDVNVKKTGKGFTPTPTRKGLDTLY 386
>pdb|2IGT|A Chain A, Crystal Structure Of The Sam Dependent Methyltransferase
From Agrobacterium Tumefaciens
pdb|2IGT|B Chain B, Crystal Structure Of The Sam Dependent Methyltransferase
From Agrobacterium Tumefaciens
pdb|2IGT|C Chain C, Crystal Structure Of The Sam Dependent Methyltransferase
From Agrobacterium Tumefaciens
Length = 332
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 73 SLWDVLWSDP-CIGPDTHRRMKRFQRTNHFPLIMELCRKNLLAKNLNQMKIQYPNDYNFF 131
S +D++ +DP G TH + +Q +H PL +++CR+ L K L + Y +F+
Sbjct: 224 STYDIILTDPPKFGRGTHGEV--WQLFDHLPLXLDICREILSPKALGLVLTAYSIRASFY 281
>pdb|3K7D|A Chain A, C-Terminal (Adenylylation) Domain Of E.Coli Glutamine
Synthetase Adenylyltransferase
pdb|3K7D|B Chain B, C-Terminal (Adenylylation) Domain Of E.Coli Glutamine
Synthetase Adenylyltransferase
Length = 498
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 413 KERQWAWERAHMGNFRLLYPC-QDGDKYDSMCRAIESASYYKDTFSSNMRSM-------L 464
K W WE + R++Y Q +D++ R I + T + +R M L
Sbjct: 328 KNEAWTWEHQALVRARVVYGDPQLTAHFDAVRREIMTLPREGKTLQTEVREMREKMRAHL 387
Query: 465 GRAHRQDIDMRRDNHGVT 482
G HR D++ D G+T
Sbjct: 388 GNKHRDRFDIKADEGGIT 405
>pdb|1JQV|A Chain A, The K213e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JQV|B Chain B, The K213e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 101 FPLIMELCRKNLLAKNLNQMKIQYPNDYNFFPQTWILPRDNREVHAFLTSKKATVIVKPD 160
P +L +++A+ LNQ FP T++ ++ F+ + +V++KP+
Sbjct: 165 LPPYFDLVHFDIMAEILNQ-----------FPLTYVNSVNSIGNGLFIDPEAESVVIKPE 213
Query: 161 NGSNGLGISLIR 172
+G G+G + I+
Sbjct: 214 DGFGGIGGAYIK 225
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,300,737
Number of Sequences: 62578
Number of extensions: 885660
Number of successful extensions: 2118
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2096
Number of HSP's gapped (non-prelim): 25
length of query: 714
length of database: 14,973,337
effective HSP length: 106
effective length of query: 608
effective length of database: 8,340,069
effective search space: 5070761952
effective search space used: 5070761952
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)