Query psy13386
Match_columns 714
No_of_seqs 334 out of 1353
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 18:09:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2156|consensus 100.0 1.7E-77 3.8E-82 648.5 22.3 416 17-445 173-619 (662)
2 PF03133 TTL: Tubulin-tyrosine 100.0 2.1E-65 4.6E-70 535.5 12.2 276 91-375 3-285 (292)
3 KOG2158|consensus 100.0 7.3E-63 1.6E-67 529.6 7.6 383 71-462 149-563 (565)
4 KOG2157|consensus 100.0 1E-52 2.3E-57 466.1 24.7 324 45-381 76-432 (497)
5 KOG2155|consensus 100.0 1E-32 2.2E-37 295.6 8.6 296 52-379 310-623 (631)
6 PF14398 ATPgrasp_YheCD: YheC/ 99.8 5E-19 1.1E-23 184.8 23.3 214 106-372 15-256 (262)
7 PF08443 RimK: RimK-like ATP-g 98.9 4.7E-09 1E-13 104.5 10.8 73 131-209 18-97 (190)
8 TIGR00768 rimK_fam alpha-L-glu 98.9 1.8E-08 3.9E-13 103.7 14.4 74 130-209 102-184 (277)
9 TIGR02144 LysX_arch Lysine bio 98.9 9.4E-08 2E-12 99.4 19.5 72 131-209 102-183 (280)
10 TIGR02291 rimK_rel_E_lig alpha 98.8 7.4E-08 1.6E-12 104.0 16.1 45 130-175 51-98 (317)
11 PRK10446 ribosomal protein S6 98.8 4.5E-08 9.7E-13 103.9 14.0 74 130-209 113-193 (300)
12 PRK01372 ddl D-alanine--D-alan 98.7 8.6E-07 1.9E-11 93.6 20.1 70 131-209 113-188 (304)
13 PRK01966 ddl D-alanyl-alanine 98.7 4.8E-07 1E-11 97.7 18.2 142 152-358 162-309 (333)
14 PLN02941 inositol-tetrakisphos 98.7 4.8E-07 1E-11 98.2 17.1 148 55-209 39-205 (328)
15 PF13535 ATP-grasp_4: ATP-gras 98.6 3.7E-07 8.1E-12 87.9 13.1 88 108-209 3-100 (184)
16 PRK14571 D-alanyl-alanine synt 98.6 1.4E-06 3E-11 92.4 17.6 51 153-211 126-182 (299)
17 PRK14568 vanB D-alanine--D-lac 98.6 1.2E-06 2.6E-11 95.1 17.5 35 324-358 284-318 (343)
18 KOG2158|consensus 98.6 5.9E-09 1.3E-13 114.8 -1.7 173 322-511 11-206 (565)
19 TIGR01205 D_ala_D_alaTIGR D-al 98.5 3.4E-06 7.4E-11 89.3 17.1 50 153-210 147-202 (315)
20 PRK14572 D-alanyl-alanine synt 98.5 7.1E-06 1.5E-10 89.3 19.8 50 153-210 172-227 (347)
21 COG0189 RimK Glutathione synth 98.5 2.1E-06 4.5E-11 93.0 15.3 182 93-354 103-293 (318)
22 PF07478 Dala_Dala_lig_C: D-al 98.5 1.6E-06 3.4E-11 88.0 13.1 139 153-358 34-183 (203)
23 PRK14569 D-alanyl-alanine synt 98.5 3.8E-06 8.3E-11 89.3 15.6 49 153-209 131-184 (296)
24 PRK14570 D-alanyl-alanine synt 98.4 4.3E-06 9.2E-11 92.0 15.3 146 153-358 172-324 (364)
25 PRK05246 glutathione synthetas 98.4 2.7E-06 5.9E-11 91.3 13.2 73 130-209 134-214 (316)
26 TIGR03103 trio_acet_GNAT GNAT- 98.3 9.4E-06 2E-10 93.7 16.6 69 131-209 312-387 (547)
27 PF14397 ATPgrasp_ST: Sugar-tr 98.3 1.5E-05 3.3E-10 85.0 15.5 217 99-354 16-264 (285)
28 PF02655 ATP-grasp_3: ATP-gras 98.2 4.9E-06 1.1E-10 81.1 9.3 40 153-192 32-71 (161)
29 TIGR01161 purK phosphoribosyla 98.2 0.00012 2.6E-09 79.5 19.3 61 131-192 113-178 (352)
30 PLN02257 phosphoribosylamine-- 98.2 6.5E-05 1.4E-09 84.6 17.8 60 132-192 118-189 (434)
31 PRK12458 glutathione synthetas 98.2 4.1E-05 8.8E-10 83.5 15.4 98 96-209 116-221 (338)
32 PF02955 GSH-S_ATP: Prokaryoti 98.1 2.6E-05 5.7E-10 77.7 11.3 74 129-209 10-91 (173)
33 TIGR01380 glut_syn glutathione 98.0 9.3E-05 2E-09 79.7 15.4 73 130-209 133-213 (312)
34 PRK12767 carbamoyl phosphate s 98.0 0.00017 3.6E-09 76.8 16.5 71 131-208 126-200 (326)
35 TIGR01142 purT phosphoribosylg 98.0 0.00018 3.8E-09 78.5 16.7 61 131-192 116-186 (380)
36 PRK13789 phosphoribosylamine-- 98.0 0.00042 9.1E-09 77.9 19.4 54 139-192 130-195 (426)
37 PRK14016 cyanophycin synthetas 98.0 7.4E-05 1.6E-09 89.1 13.8 70 131-209 229-305 (727)
38 PRK08463 acetyl-CoA carboxylas 97.9 0.00057 1.2E-08 77.8 18.4 62 132-193 131-205 (478)
39 PRK06019 phosphoribosylaminoim 97.8 0.00049 1.1E-08 75.7 16.5 61 131-192 115-180 (372)
40 TIGR00514 accC acetyl-CoA carb 97.8 0.001 2.2E-08 74.9 19.3 57 137-193 137-205 (449)
41 TIGR01235 pyruv_carbox pyruvat 97.8 0.00054 1.2E-08 85.3 18.6 72 132-210 132-215 (1143)
42 PRK14573 bifunctional D-alanyl 97.8 0.00067 1.5E-08 81.8 19.0 35 324-358 730-764 (809)
43 COG1181 DdlA D-alanine-D-alani 97.8 0.00023 5E-09 77.3 13.4 142 146-358 136-294 (317)
44 PRK08591 acetyl-CoA carboxylas 97.8 0.00078 1.7E-08 75.5 18.0 56 137-192 137-204 (451)
45 PRK06849 hypothetical protein; 97.8 0.00062 1.3E-08 74.9 16.4 61 131-192 131-195 (389)
46 PRK05586 biotin carboxylase; V 97.8 0.00059 1.3E-08 76.7 16.5 54 139-192 139-204 (447)
47 PRK08462 biotin carboxylase; V 97.8 0.00086 1.9E-08 75.2 17.7 58 136-193 138-207 (445)
48 PRK07206 hypothetical protein; 97.8 0.00049 1.1E-08 76.0 15.1 69 131-206 123-207 (416)
49 PRK06111 acetyl-CoA carboxylas 97.7 0.00082 1.8E-08 75.1 16.6 54 139-192 139-204 (450)
50 PRK00885 phosphoribosylamine-- 97.7 0.0022 4.7E-08 71.5 19.1 61 131-192 117-189 (420)
51 PRK07178 pyruvate carboxylase 97.7 0.0016 3.5E-08 74.0 18.3 55 139-193 138-204 (472)
52 TIGR02068 cya_phycin_syn cyano 97.7 0.00045 9.7E-09 84.1 14.3 70 131-209 228-304 (864)
53 TIGR00877 purD phosphoribosyla 97.7 0.0029 6.2E-08 70.3 19.5 61 131-192 119-191 (423)
54 PRK09288 purT phosphoribosylgl 97.7 0.0014 3.1E-08 71.8 16.6 61 131-192 129-199 (395)
55 PRK12999 pyruvate carboxylase; 97.6 0.0015 3.3E-08 81.6 18.5 62 132-193 136-209 (1146)
56 PRK08654 pyruvate carboxylase 97.6 0.0023 5E-08 73.5 18.6 55 139-193 139-205 (499)
57 PRK13790 phosphoribosylamine-- 97.6 0.0029 6.3E-08 70.0 18.5 70 132-208 83-160 (379)
58 PRK12833 acetyl-CoA carboxylas 97.6 0.0023 5E-08 72.6 17.5 55 139-193 142-208 (467)
59 PRK06524 biotin carboxylase-li 97.5 0.0035 7.6E-08 71.8 18.0 62 140-207 167-235 (493)
60 TIGR01369 CPSaseII_lrg carbamo 97.5 0.002 4.4E-08 79.9 16.9 72 131-208 684-763 (1050)
61 PRK05294 carB carbamoyl phosph 97.5 0.0017 3.7E-08 80.8 15.9 69 131-206 684-761 (1066)
62 PLN02948 phosphoribosylaminoim 97.5 0.0036 7.7E-08 73.2 17.2 61 131-192 136-203 (577)
63 TIGR01435 glu_cys_lig_rel glut 97.4 0.0019 4.2E-08 77.1 14.1 70 131-209 490-569 (737)
64 PRK02186 argininosuccinate lya 97.4 0.0023 5E-08 78.1 15.0 71 131-208 122-199 (887)
65 PRK06395 phosphoribosylamine-- 97.3 0.0084 1.8E-07 67.8 18.0 74 287-375 245-318 (435)
66 PRK02471 bifunctional glutamat 97.2 0.003 6.5E-08 75.9 13.7 70 131-209 503-582 (752)
67 COG1821 Predicted ATP-utilizin 97.2 0.00071 1.5E-08 71.1 7.3 33 153-192 139-171 (307)
68 COG0439 AccC Biotin carboxylas 97.1 0.018 3.8E-07 65.6 17.5 57 139-195 139-207 (449)
69 PLN02735 carbamoyl-phosphate s 97.1 0.0095 2.1E-07 74.5 16.3 70 131-206 717-794 (1102)
70 PRK13278 purP 5-formaminoimida 97.0 0.016 3.4E-07 64.2 15.5 50 153-208 150-210 (358)
71 PRK12815 carB carbamoyl phosph 97.0 0.015 3.2E-07 72.7 16.6 69 131-206 685-759 (1068)
72 PRK13277 5-formaminoimidazole- 97.0 0.01 2.2E-07 65.7 13.5 62 131-208 141-217 (366)
73 PF05770 Ins134_P3_kin: Inosit 97.0 0.023 5.1E-07 61.7 15.9 97 106-209 90-191 (307)
74 PLN02735 carbamoyl-phosphate s 96.9 0.013 2.9E-07 73.3 15.4 61 131-192 159-228 (1102)
75 TIGR02712 urea_carbox urea car 96.9 0.022 4.8E-07 71.8 17.2 60 132-192 131-202 (1201)
76 PF01071 GARS_A: Phosphoribosy 96.8 0.013 2.9E-07 59.7 12.2 54 139-192 24-90 (194)
77 PRK05294 carB carbamoyl phosph 96.7 0.024 5.2E-07 70.8 15.8 61 131-192 143-211 (1066)
78 PRK05784 phosphoribosylamine-- 96.7 0.06 1.3E-06 61.9 17.3 41 134-175 127-167 (486)
79 TIGR01369 CPSaseII_lrg carbamo 96.6 0.035 7.6E-07 69.3 15.7 61 131-192 142-210 (1050)
80 PF15632 ATPgrasp_Ter: ATP-gra 96.5 0.12 2.7E-06 56.7 17.4 62 130-192 121-207 (329)
81 PRK12815 carB carbamoyl phosph 96.2 0.058 1.3E-06 67.5 14.8 61 131-192 143-211 (1068)
82 PF14403 CP_ATPgrasp_2: Circul 96.1 0.02 4.4E-07 64.9 9.2 97 129-231 308-426 (445)
83 PF02786 CPSase_L_D2: Carbamoy 96.1 0.21 4.6E-06 51.4 15.6 66 129-194 15-92 (211)
84 COG1038 PycA Pyruvate carboxyl 95.5 0.18 3.9E-06 60.3 13.7 153 128-353 134-300 (1149)
85 COG4770 Acetyl/propionyl-CoA c 94.9 0.39 8.4E-06 55.8 13.7 174 129-375 129-317 (645)
86 PF02222 ATP-grasp: ATP-grasp 94.1 2.9 6.3E-05 41.9 16.4 53 140-192 16-73 (172)
87 KOG0369|consensus 94.0 0.39 8.4E-06 56.6 11.2 95 102-196 112-240 (1176)
88 COG0151 PurD Phosphoribosylami 92.6 6 0.00013 45.0 17.4 173 140-374 126-313 (428)
89 PF02750 Synapsin_C: Synapsin, 92.2 0.21 4.5E-06 51.2 5.0 92 106-208 8-105 (203)
90 KOG0238|consensus 91.0 1.6 3.5E-05 50.4 10.7 43 153-195 149-203 (670)
91 COG2232 Predicted ATP-dependen 89.3 2 4.3E-05 47.4 9.4 41 153-203 150-190 (389)
92 COG0027 PurT Formate-dependent 87.0 13 0.00029 41.1 13.7 66 135-209 132-207 (394)
93 COG2308 Uncharacterized conser 86.1 2.1 4.6E-05 48.8 7.5 127 97-232 312-457 (488)
94 PF04174 CP_ATPgrasp_1: A circ 82.7 3.3 7.2E-05 45.7 7.1 55 324-378 66-121 (330)
95 PHA02117 glutathionylspermidin 66.2 11 0.00024 42.7 6.0 54 154-208 309-366 (397)
96 PRK10507 bifunctional glutathi 63.1 24 0.00051 42.4 8.1 55 153-208 528-587 (619)
97 KOG3895|consensus 62.7 23 0.00049 39.7 7.2 102 97-206 188-292 (488)
98 COG0458 CarB Carbamoylphosphat 61.2 1.1E+02 0.0024 35.0 12.4 26 154-179 152-177 (400)
99 PF07065 D123: D123; InterPro 60.4 39 0.00083 37.0 8.6 23 329-351 217-240 (299)
100 PF08886 GshA: Glutamate-cyste 48.2 82 0.0018 35.8 8.7 87 152-253 260-365 (404)
101 TIGR02049 gshA_ferroox glutama 44.4 2E+02 0.0042 32.9 10.8 87 152-253 257-362 (403)
102 PF14847 Ras_bdg_2: Ras-bindin 42.6 29 0.00062 32.5 3.5 36 45-82 13-50 (105)
103 COG1759 5-formaminoimidazole-4 41.1 23 0.0005 39.3 3.1 52 131-192 139-203 (361)
104 COG2308 Uncharacterized conser 39.6 1.5E+02 0.0033 34.4 9.3 58 322-379 141-199 (488)
105 PF04174 CP_ATPgrasp_1: A circ 39.1 13 0.00028 41.2 0.8 86 97-188 234-330 (330)
106 COG3919 Predicted ATP-grasp en 26.2 84 0.0018 34.8 4.3 150 6-192 27-200 (415)
107 COG0754 Gsp Glutathionylspermi 20.5 82 0.0018 35.6 2.9 41 154-194 298-343 (387)
No 1
>KOG2156|consensus
Probab=100.00 E-value=1.7e-77 Score=648.53 Aligned_cols=416 Identities=31% Similarity=0.544 Sum_probs=347.1
Q ss_pred CCCcccCccccccCCCccccccccceEEEEEEccCccHHHHHHHHHhCCCEEcCCCCCeEEEEeCCCCChhhhhhcCcCc
Q psy13386 17 LPPIEQSSTSLITGDSDLSSKKSRVRVVATICLDLCSYELVGRVARQCGMTVVDDKSLWDVLWSDPCIGPDTHRRMKRFQ 96 (714)
Q Consensus 17 ~~p~~~~~~~~~~gd~~~~~~k~r~~~~i~i~~~~~~y~~Vr~vl~~~G~~~v~e~~~wdl~W~d~~~~~e~~~~l~~~Q 96 (714)
.||+..+.++...+..-. ..-..++.++.+.-...+|+.++.+.||++++.+.+|..+|+.+.. .-.++.++.||
T Consensus 173 VpP~i~f~s~~~k~~k~p----~~~~~vl~w~~t~~~p~vv~~vl~~sgfkivk~n~dw~g~Wg~h~k-sp~fr~ir~HQ 247 (662)
T KOG2156|consen 173 VPPTILFDSSADKVPKPP----PPLHAVLKWKPTEVMPKVVRQVLANSGFKIVKVNDDWMGVWGHHLK-SPSFRAIRSHQ 247 (662)
T ss_pred CCCeeeeccccccCCCCC----hhHHHHhccCCcchhHHHHHHHHHhcccEEecccchHHHHhhhhcC-Cchhhhhhhhh
Confidence 456666666544443211 1223568999999999999999999999999999999999998643 34578899999
Q ss_pred eecccCCCCcchhhHHHHHHHHHHHHHCCC-CCCcccceeccCcchHHHHHHHhcCC-cEEEEeCCCCCCCCcEEEEccc
Q psy13386 97 RTNHFPLIMELCRKNLLAKNLNQMKIQYPN-DYNFFPQTWILPRDNREVHAFLTSKK-ATVIVKPDNGSNGLGISLIRNL 174 (714)
Q Consensus 97 kVNHFPG~~~LtRKd~LarnL~rm~k~~p~-~y~f~P~TfiLP~d~~~f~~~~k~~k-~~WIvKP~~gsrGrGI~l~~~l 174 (714)
+||||||+..|||||.||+++.+++..|++ +|.|+|+||+||.|.++|..|+.++. ..|||||.+++||.||.+++++
T Consensus 248 kvNH~PGsF~IGRKD~lW~~~~~~~~rf~~kef~fmPrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw 327 (662)
T KOG2156|consen 248 KVNHFPGSFRIGRKDRLWRNILRNQVRFGKKEFGFMPRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKW 327 (662)
T ss_pred hhccCCCccccccchHHHHHHHHHHHHhcccccCccceeeeccccHHHHHHHHhhCccccEEecCcccccCcceEeccch
Confidence 999999999999999999999999999975 99999999999999999999998865 7799999999999999999999
Q ss_pred hhhhhccCCceEEeecccCcccCCCceEEEEEEEEEeeecCCEEEEEeceEEEeccCCCCCCCCCCCCCceeEeeecccc
Q psy13386 175 RHLSQEQNRNYICQEYIANPFLIDGLKFDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVN 254 (714)
Q Consensus 175 ~eI~~~~~~~~IVQkYI~nPlLIdGrKFDLRvYVLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~~~Nl~d~~~HLTNysIn 254 (714)
.++. .+.+.|||+||++|+||+|.|||+|+||+|||++|||||+|++||+|||+.+|++ ..+|+.|.|||||||++|
T Consensus 328 ~q~p--k~rpLvvQ~yieRP~ling~KFDlrlYv~vts~nPLRIy~y~dgL~RFasvkYsp-~~a~~~dKymhltnYs~n 404 (662)
T KOG2156|consen 328 SQFP--KDRPLVVQKYIERPLLINGSKFDLRLYVVVTSVNPLRIYIYNDGLVRFASVKYSP-FDANNVDKYMHLTNYSPN 404 (662)
T ss_pred hhCC--CcccHHHHHHhhcceeecCcceeEEEEEEEeecCceEEEEeccceeeeccccCCc-ccccccceeEEecccccc
Confidence 9999 8889999999999999999999999999999999999999999999999999995 467889999999999999
Q ss_pred ccCCCcccc----cccCCccChhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHhhhhHHHhhcccCCCCCCCCCeEEEEE
Q psy13386 255 KHSISFIHD----EEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLG 330 (714)
Q Consensus 255 K~s~nf~~d----ee~Gsk~sLs~l~~~L~~~G~d~~~lw~~IkdiIikTllAa~p~L~~~y~~~~~~~~~~~~cFELlG 330 (714)
+.+. |..+ .-.|++|++..++.+|..+|+|.++||.+|+++|++||++.+..+...++... .....||||||
T Consensus 405 ke~~-ys~~k~~n~~~g~kwtl~~lw~~l~~qGvdt~kIW~qir~iV~kti~s~E~~i~~~lr~~~---~~~~~CfELfg 480 (662)
T KOG2156|consen 405 KESN-YSLNKYFNACQGSKWTLKSLWLYLDNQGVDTDKIWEQIRNIVIKTIISGEKGINSMLRNYV---ENPYSCFELFG 480 (662)
T ss_pred ccch-hhhhhHHhhcCCchhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccChhHHHHHHHHh---cCCchhhhhhc
Confidence 9876 5432 24799999999999999999999999999999999999999998876665422 23467999999
Q ss_pred EEEEecCCCCeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCCchhhHH--hHHHHHHHHHHHhhcCC--------
Q psy13386 331 FDILLDDTLNPYVLEVNHSPSFYTDTEIDVEIKEQVLRDTFILCNLNSSIKRK--VLQEERLEVQRRLFKRP-------- 400 (714)
Q Consensus 331 fDfLLD~~lKPWLLEVN~sPSl~tds~lD~~vK~~LI~DtL~Ll~i~~~~k~~--~~ee~k~~~~~Rll~~~-------- 400 (714)
|||+||++++|||||||.+||+++.+++|-.+|.+||.++|+|+|+....+.. ...+..- --+|+....
T Consensus 481 FDiilDedLkpwLlEVNISPSLhS~tpld~~vk~~li~~vlNlagi~~p~~~s~~~~a~~~~-st~ri~~~~~~~e~l~K 559 (662)
T KOG2156|consen 481 FDIILDEDLKPWLLEVNISPSLHSETPLDCSVKAPLIQDVLNLAGIKVPPKPSTDSLAELSL-STKRITTDKLTREELIK 559 (662)
T ss_pred ceEEecCccceeeEEEecccccccCCCccchhhhHHHHHHHHhcceecCCCccchhhhhhCC-CccccccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999987652111 0000000 001111111
Q ss_pred ------CCcchHHHhh---------hhhhHhHHHHHhcCCCeEEeccCCCcccHHHHHhh
Q psy13386 401 ------EREEDEEDRQ---------GCKERQWAWERAHMGNFRLLYPCQDGDKYDSMCRA 445 (714)
Q Consensus 401 ------~~~~~~~~~~---------~~~~~~~~~E~~~~G~F~rIyP~~~~~~Y~~~~~~ 445 (714)
..+++++... -...++.++|..|+|.|+||||++.++.|.+|+++
T Consensus 560 ~~~~t~~~~dq~ey~~il~~LtpddvR~Lv~aedEl~r~~~~erIFPt~~t~~yl~y~~~ 619 (662)
T KOG2156|consen 560 HAAHTCKIEDQEEYVLILDNLTPDDVRCLVEAEDELARRGDFERIFPTAITSPYLKYVEA 619 (662)
T ss_pred HHHHhhcccchHHHHHHHhcCChHHHHHHHHHHHHHHhcccHhhhCCCcCccHHHHHhhh
Confidence 1112222221 11234568999999999999999999999999954
No 2
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=100.00 E-value=2.1e-65 Score=535.49 Aligned_cols=276 Identities=43% Similarity=0.799 Sum_probs=158.2
Q ss_pred hcCcCceecccCCCCcchhhHHHHHHHHHHHHHCCCCCCcccceeccCcchHHHHHHHhcCC-cEEEEeCCCCCCCCcEE
Q psy13386 91 RMKRFQRTNHFPLIMELCRKNLLAKNLNQMKIQYPNDYNFFPQTWILPRDNREVHAFLTSKK-ATVIVKPDNGSNGLGIS 169 (714)
Q Consensus 91 ~l~~~QkVNHFPG~~~LtRKd~LarnL~rm~k~~p~~y~f~P~TfiLP~d~~~f~~~~k~~k-~~WIvKP~~gsrGrGI~ 169 (714)
.+.++|+||||||+++||+|+.|+++|+++.+.++..++|+|+||+||.++.+|..+..... ++||+||++++||+||+
T Consensus 3 ~~~~~q~vN~~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~p~t~~l~~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~ 82 (292)
T PF03133_consen 3 DMKPFQKVNHFPGSQELTRKDLLAKNLQRYRKKFPKEFDFYPETFILPQDYKEFLKYFEKNPKNLWIVKPSNGSRGRGIK 82 (292)
T ss_dssp --CHHTT-TSS--EEEE-----------------------------HHHHHHHHHHHHHTTS---EEEEES-------EE
T ss_pred CCCCCeeEccCCCCchhhhhHHHHHHHHHHHhhcCCcccCCcceEecHHHHHHHHHHHhcCCCCEEEEeccccCCCCCce
Confidence 35679999999999999999999999999999998889999999999999999999888766 79999999999999999
Q ss_pred EEccchhhhh---ccCCceEEeecccCcccCCCceEEEEEEEEEeeecCCEEEEEeceEEEeccCCCCCCCCCCCCCcee
Q psy13386 170 LIRNLRHLSQ---EQNRNYICQEYIANPFLIDGLKFDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYM 246 (714)
Q Consensus 170 l~~~l~eI~~---~~~~~~IVQkYI~nPlLIdGrKFDLRvYVLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~~~Nl~d~~~ 246 (714)
++++++++.+ ...+.+|||+||+|||||+|||||||+||||||++||+||+|++|++|||+++|+. +..++.+.++
T Consensus 83 l~~~~~~i~~~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts~~pl~vy~y~~g~vR~~~~~Y~~-~~~~~~~~~~ 161 (292)
T PF03133_consen 83 LFNNLEQILRFSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTSLNPLRVYLYKEGYVRFASEPYDP-DLDDLSDRFA 161 (292)
T ss_dssp EES-HHHHHCCHCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T--T--EEEES--EEEE-SS---------------
T ss_pred ecCCHHHHHHHhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEeeccceeeeeccCceEEeccceeec-cccccccccc
Confidence 9999999983 46789999999999999999999999999999999999999999999999999994 3467889999
Q ss_pred EeeeccccccCCCcc--cccccCCccChhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHhh-hhHHHhhcccCCCCCCCC
Q psy13386 247 HLTNYSVNKHSISFI--HDEEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKTVLSAH-PNIKTMYNSVFPRHNYMT 323 (714)
Q Consensus 247 HLTNysInK~s~nf~--~dee~Gsk~sLs~l~~~L~~~G~d~~~lw~~IkdiIikTllAa~-p~L~~~y~~~~~~~~~~~ 323 (714)
||||+++|++.+... .....|++|++..|+.++.. |.+++.+|++|.++|+++++++. ... ........
T Consensus 162 HlTN~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~i~~~i~~~~~~~~~~~~-------~~~~~~~~ 233 (292)
T PF03133_consen 162 HLTNYSIQKKSESNEEDSNEENGNKWSLDQFEEYLKE-GIDWEKIWEKICDIIIKTILAAEFRSS-------QPNMPPRP 233 (292)
T ss_dssp ----------------------EEEHHHHHHHCTTTS-SS-STTTCHHHHHHHHHHHHHH-HHHH-------H--TTSSS
T ss_pred cccccccccccccccccccccccccchhhhhhhhccc-CCCcccchhhhhHHHHHHhhhhhhhhc-------cccccccc
Confidence 999999999844111 12245789999999999998 88999999999999999999984 221 12234567
Q ss_pred CeEEEEEEEEEecCCCCeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcC
Q psy13386 324 ACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEIDVEIKEQVLRDTFILCN 375 (714)
Q Consensus 324 ~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds~lD~~vK~~LI~DtL~Ll~ 375 (714)
+|||+||||||||++++|||||||++|+++++++.+..++.+|+.|+|+++.
T Consensus 234 ~~Fel~G~DfmlD~~~kpwLLEvN~~Psl~~~~~~~~~~~~~li~d~l~i~v 285 (292)
T PF03133_consen 234 NCFELFGFDFMLDEDLKPWLLEVNSNPSLSTSTPVDKELKPQLIDDLLKIVV 285 (292)
T ss_dssp EE-EEEEEEEEEBTTS-EEEEEEESS------TTTHHHHHHHHHHHTTTTTS
T ss_pred cccceeeeEEEecCCCeEEEeeCCCCCCcccCCHhHHHHHHHHHHHHhEEEe
Confidence 9999999999999999999999999999999999999999999999999554
No 3
>KOG2158|consensus
Probab=100.00 E-value=7.3e-63 Score=529.65 Aligned_cols=383 Identities=34% Similarity=0.507 Sum_probs=325.2
Q ss_pred CCCCeEEEEeCCCCChhhhhhcCcCceecccCCCCcchhhHHHHHHHHHHHHHCCCCCCcccceeccCcchHHHHHHHhc
Q psy13386 71 DKSLWDVLWSDPCIGPDTHRRMKRFQRTNHFPLIMELCRKNLLAKNLNQMKIQYPNDYNFFPQTWILPRDNREVHAFLTS 150 (714)
Q Consensus 71 e~~~wdl~W~d~~~~~e~~~~l~~~QkVNHFPG~~~LtRKd~LarnL~rm~k~~p~~y~f~P~TfiLP~d~~~f~~~~k~ 150 (714)
....|.+.|......+.....+. ||++||||||.+++ ||.|. |.+|++.||++|.|+|.||.||+++.+|.++...
T Consensus 149 ~~~~~~~l~~v~f~~~~~~~~~~-fqrvn~fPgm~e~~-kd~Ls--l~~mqkifpeey~fyp~sw~lPa~l~df~a~~~~ 224 (565)
T KOG2158|consen 149 LLEKYENLLAVAFQTFLSGRAAS-FQRENNFPGMREKE-KDILD--LLEMQKIFPEEYMFYPTSWRLPAPLCDFPASTEI 224 (565)
T ss_pred hhhhhhhHHHHhhchhhhccchh-hhhhhcCchHHHHH-HHHHh--HHHHHhcChHHhcCCCccccCchHHHHHHHHHHH
Confidence 34678888877644455555666 99999999999999 99999 9999999999999999999999999999999988
Q ss_pred CCcEEEEeCCCCCCCCcEEEEccchhhhhccCCceEEeecccCcccC-CCceEEEEEEEEEeeecCCEEEEEeceEEEec
Q psy13386 151 KKATVIVKPDNGSNGLGISLIRNLRHLSQEQNRNYICQEYIANPFLI-DGLKFDMRVYTLITSFDPMRIYVHKDGIVRFA 229 (714)
Q Consensus 151 ~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~~~~~~IVQkYI~nPlLI-dGrKFDLRvYVLVTS~dPLrIYlY~eGlvRfA 229 (714)
.+.+|||||+.|++|.||++++++..+. ..+..+||+||..|||| |++|||+|+|+|++|+|||+||++++|++|||
T Consensus 225 ~KrtfivkpDsgaqg~giylisDir~~g--~~Q~~~vQeyV~~pLli~dkyKfd~rvy~likSvdPlsIfva~eGlaRFc 302 (565)
T KOG2158|consen 225 MKRTFIVKPDSGAQGSGIYLISDIREKG--EYQNKKVQEYVTYPLLISDKYKFDQRVYSLIKSVDPLSIFVASEGLARFC 302 (565)
T ss_pred hcccEEECCCCCCCCcceeeechhhhhh--HHHHHHHHHHhcccccccccceeeeeeeeeeeccCcceEEEeccchhhhh
Confidence 8899999999999999999998887777 55668999999999999 99999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCceeEeeeccccccCCCcccc---cccCCccChhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHhhh
Q psy13386 230 TVKYERPKQGNLTNKYMHLTNYSVNKHSISFIHD---EEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKTVLSAHP 306 (714)
Q Consensus 230 t~~Y~~p~~~Nl~d~~~HLTNysInK~s~nf~~d---ee~Gsk~sLs~l~~~L~~~G~d~~~lw~~IkdiIikTllAa~p 306 (714)
|++|..|+.+|..+.+||||||++|+++.+|... ...||++.|++..++|+..|+++..+|.+|+.++++|.+|+.|
T Consensus 303 Teky~ePts~n~~~lymhlTnYslnk~nsny~hsd~sq~~gSkR~Lsti~~ql~s~gvdtk~vwsDik~v~iktvlA~~p 382 (565)
T KOG2158|consen 303 TEKYIEPTSANRSHLYMHLTNYSLNKPNSNYAHSDNSQVSGSKRQLSTINEQLDSLGVDTKFVWSDIKIVFIKTVLAESP 382 (565)
T ss_pred hccccCCCcccHHHHHHHHHHhhhcCCCccccccCcccccchhHHHHHHHHHHHhcCchHHHHHhhhhhhhcchhhhcCH
Confidence 9999999999999999999999999999999764 3579999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCCCCCCCeEEEEEEEEEecCCCCeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCCchhhHHhHH
Q psy13386 307 NIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEIDVEIKEQVLRDTFILCNLNSSIKRKVLQ 386 (714)
Q Consensus 307 ~L~~~y~~~~~~~~~~~~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds~lD~~vK~~LI~DtL~Ll~i~~~~k~~~~e 386 (714)
.|.+.|..|++.|.....||+++|||+|.+.++.|+|+|||+.|++..+...|.+. .+|.++|+++..-....+..+-
T Consensus 383 eLk~~y~~~fp~h~tgpacfqi~gfDi~~~~k~~pillevnrapslr~~~~vd~e~--~ll~~~~n~vs~vl~~~r~~l~ 460 (565)
T KOG2158|consen 383 ELKEDYIDNFPYHKTGPACFQIIGFDIVKQRKVLPILLEVNRAPSLRIWKVVDVEE--VLLYRIFNRVSNVLLWSRGQLL 460 (565)
T ss_pred HHHHHHHHhCCCCCcCCceEEEeccchhhccccchHHHHhcccccccccccCCCch--hHHHhhhhhhHHHHHHhhcchh
Confidence 99999999999999999999999999999999999999999999999999998877 8999999998776666655555
Q ss_pred HHHHHHHHHhhc----CCCCcc-------hHHHhh---hhh-hHh----------HHHHHhcCCCeEEeccCCCc---cc
Q psy13386 387 EERLEVQRRLFK----RPEREE-------DEEDRQ---GCK-ERQ----------WAWERAHMGNFRLLYPCQDG---DK 438 (714)
Q Consensus 387 e~k~~~~~Rll~----~~~~~~-------~~~~~~---~~~-~~~----------~~~E~~~~G~F~rIyP~~~~---~~ 438 (714)
++...+..+++. +..... .....+ +|. .+. ..++. ++|+|+.|.|..+- +.
T Consensus 461 ~d~~~~~~~l~e~~~~~~p~v~~p~sl~~~q~~k~~~k~~~~~ve~~atd~g~~~~~~~~-~~gn~r~~~p~~~~s~l~~ 539 (565)
T KOG2158|consen 461 WDCFCDSGSLWESIFNKSPEVVTPLSLQCCQRLKELCKQCLLVVEKYATDKGGSLSGIGP-DWGNSRYLLPGSTQSFLRT 539 (565)
T ss_pred HhHHHHHhhHHHHHhcCCCcccCccchHHHHHHHhcccccceeeeeccccccccccccch-hhcceeeecCCcchhhccc
Confidence 555555555543 211111 111111 111 000 13566 99999999999843 35
Q ss_pred HHHHHhhhccCcchhhhhhhhhhh
Q psy13386 439 YDSMCRAIESASYYKDTFSSNMRS 462 (714)
Q Consensus 439 Y~~~~~~~~~~sl~~~t~~s~~re 462 (714)
|..++...+..+.+.+++.+..++
T Consensus 540 ~t~~lkq~~~~~~~~~v~~~~~~~ 563 (565)
T KOG2158|consen 540 PTYNLKQNSPGMTRSNVLFTSRYG 563 (565)
T ss_pred cchhhhhcCcccceehhhhheecc
Confidence 666665556777788888776554
No 4
>KOG2157|consensus
Probab=100.00 E-value=1e-52 Score=466.11 Aligned_cols=324 Identities=27% Similarity=0.442 Sum_probs=276.2
Q ss_pred EEEEccCccHHHHHHHHHhCCCEEcC-CCCCeEEEEeCCCCChhhhhhcCcC-ceecccCCCCcchhhHHHHHHHHHHHH
Q psy13386 45 ATICLDLCSYELVGRVARQCGMTVVD-DKSLWDVLWSDPCIGPDTHRRMKRF-QRTNHFPLIMELCRKNLLAKNLNQMKI 122 (714)
Q Consensus 45 i~i~~~~~~y~~Vr~vl~~~G~~~v~-e~~~wdl~W~d~~~~~e~~~~l~~~-QkVNHFPG~~~LtRKd~LarnL~rm~k 122 (714)
+..........+|..++.+.||..+. ...+|+++|.++.........+.+| |++||||+..+|+|||.|+.++.+++.
T Consensus 76 i~y~~~~~~~~~i~~~~~~~G~l~~~~~~~~~~f~w~~~~~~~~~~~~~~p~~~~~~~~p~~~~L~rkd~l~~~i~r~~~ 155 (497)
T KOG2157|consen 76 IKYRTQEKEPKLLNNFLNREGWLQFTESAEDWNFYWRGYEGIDFDFSWLAPYNQVVNHFPRRKELTRKDLLMKLIKRYLA 155 (497)
T ss_pred eEEEecccchHHHHHHHhhcceeeecccccceEEEEeccccccHHHhhhcchhhhhhccccHHHhhhhHHhhhhHHHHHH
Confidence 44444455558889999999998776 6789999999976433344456777 999999999999999999999999999
Q ss_pred HCCCC------------CCcccceeccCcchHHHHHHHhc--CCcEEEEeCCCCCCCCcEEEEccchhhhhc--------
Q psy13386 123 QYPND------------YNFFPQTWILPRDNREVHAFLTS--KKATVIVKPDNGSNGLGISLIRNLRHLSQE-------- 180 (714)
Q Consensus 123 ~~p~~------------y~f~P~TfiLP~d~~~f~~~~k~--~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~-------- 180 (714)
.++.. ++|.|.|+.+|.++..|...... ..++||+||++.++|+||++++.++++...
T Consensus 156 ~~e~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~v~e~~~~~~~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~~ 235 (497)
T KOG2157|consen 156 LLERSRLPKAQLEDYILLDYVETTFVLLDEYKKLVEEYEEDSERSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSFI 235 (497)
T ss_pred hccccccchhhcccceeecccchhhhhhhHHHHHHHHHHhccccceEEeccccccccceeEEecchhhhhhhhhcccccc
Confidence 98763 78999999999999999876654 349999999999999999999988886642
Q ss_pred ---cCCceEEeecccCcccCCCceEEEEEEEEEeeecCCEEEEEeceEEEeccCCCCCCCCCCCCCceeEeeeccccccC
Q psy13386 181 ---QNRNYICQEYIANPFLIDGLKFDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVNKHS 257 (714)
Q Consensus 181 ---~~~~~IVQkYI~nPlLIdGrKFDLRvYVLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~~~Nl~d~~~HLTNysInK~s 257 (714)
..+.++||+||++|+||+|+|||||.|||||+.+||.+|+|++|++|||+++|.. ..|+.|.++||||++|||+.
T Consensus 236 s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~~~pl~~y~yreg~lRf~t~~y~~--~~nl~n~~~HLtN~siqK~~ 313 (497)
T KOG2157|consen 236 SENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTHFDPLLLYRYREGFLRFSTEPYGP--LVNLQNMSVHLTNVSIQKLY 313 (497)
T ss_pred cccccccceeeeeccCccccCCceeeeeEEEEeecccchhheeeccceEEEEeccCcc--hhhhcccchhhhccccccCC
Confidence 4678999999999999999999999999999999999999999999999999995 68899999999999999999
Q ss_pred CCccccc---ccCCccChhHHHHHHHHcCCC---hhHHHHHHHHHHHHHHHHhhhhHHHhhcccCCCCCCCCCeEEEEEE
Q psy13386 258 ISFIHDE---EVGSKRKISTINQWFCRMGYD---TDLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLGF 331 (714)
Q Consensus 258 ~nf~~de---e~Gsk~sLs~l~~~L~~~G~d---~~~lw~~IkdiIikTllAa~p~L~~~y~~~~~~~~~~~~cFELlGf 331 (714)
+++.... ..|++|+++.|..||+..|.. ....|..|...|+..+.++++.+. ...+|||+|||
T Consensus 314 ~~~~~~~s~~~~~~~w~~~~~~~yl~~~~~~~~~~~~~i~~~~~~iv~~v~~s~~~~~-----------~~~n~FElyG~ 382 (497)
T KOG2157|consen 314 PNYCHLSSLLSESCKWTLNSLLLYLRNIGSPCLELKLQIKPIITGIVLSVFASATTVP-----------SLANCFELYGF 382 (497)
T ss_pred CCcccccccccCCCcccHHHHHHHHHhhcCCcccccccchhhhhhhhhhhhhhccccc-----------cccchhhhhCc
Confidence 9987643 268999999999999986543 344555555555555555554432 34689999999
Q ss_pred EEEecCCCCeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCCchhh
Q psy13386 332 DILLDDTLNPYVLEVNHSPSFYTDTEIDVEIKEQVLRDTFILCNLNSSIK 381 (714)
Q Consensus 332 DfLLD~~lKPWLLEVN~sPSl~tds~lD~~vK~~LI~DtL~Ll~i~~~~k 381 (714)
|||+|++++|||||||++|+|+.++..|..+|..++.|++.++.+...++
T Consensus 383 DfliD~~lkpwLiEiNssP~~~~t~~~d~~l~~~l~~d~l~~v~~~~~~~ 432 (497)
T KOG2157|consen 383 DFLIDEALKPWLIEINASPDLTQTTKNDARLKSKLIDDVLKVVVDPRLDP 432 (497)
T ss_pred ceeecCCCCeEEEEeecCCcccccchhhhHHHHHHHHHhhccccCccccc
Confidence 99999999999999999999999999999999999999999998776543
No 5
>KOG2155|consensus
Probab=99.97 E-value=1e-32 Score=295.61 Aligned_cols=296 Identities=22% Similarity=0.268 Sum_probs=235.2
Q ss_pred ccHHHHHHHHHhCCCEEcCCCCCeEEEEeCCCCC-hhhhhhcCcCceecccCCCCcchhhHHHHHHHHHHHHHCCCCCCc
Q psy13386 52 CSYELVGRVARQCGMTVVDDKSLWDVLWSDPCIG-PDTHRRMKRFQRTNHFPLIMELCRKNLLAKNLNQMKIQYPNDYNF 130 (714)
Q Consensus 52 ~~y~~Vr~vl~~~G~~~v~e~~~wdl~W~d~~~~-~e~~~~l~~~QkVNHFPG~~~LtRKd~LarnL~rm~k~~p~~y~f 130 (714)
+...-|.+.|.+..|.++++..++||+|+-.+++ ...+....+.|.||+||...+|+-||.|+...++ -+..-+|
T Consensus 310 tD~~Qv~e~Lt~p~f~~t~~~kdADilw~~~hf~Dykkls~e~p~~~iNQFPfE~cltvKd~LA~~a~r----~~g~~~W 385 (631)
T KOG2155|consen 310 TDDTQVTEHLTNPKFEYTDDIKDADILWMIKHFHDYKKLSEENPCGMINQFPFESCLTVKDLLAACAMR----DPGKNDW 385 (631)
T ss_pred cCcHHHHHhccCCceEeccCccccceeeehhhHHHHHHHhccCCcceeccCchHHHHHHHHHHHHHHhh----cCCCCcc
Confidence 3456677888999999999999999999976543 3334455789999999999999999999987664 3445579
Q ss_pred ccceeccCcchHHHHHHHhcC-----CcEEEEeCCCCCCCCcEEEEccchhhhh-ccCCceEEeecccCcccCCCceEEE
Q psy13386 131 FPQTWILPRDNREVHAFLTSK-----KATVIVKPDNGSNGLGISLIRNLRHLSQ-EQNRNYICQEYIANPFLIDGLKFDM 204 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~-----k~~WIvKP~~gsrGrGI~l~~~l~eI~~-~~~~~~IVQkYI~nPlLIdGrKFDL 204 (714)
+|.||.|..+..+|..++..+ .+.||+||+|.+||....++.++.+|.+ ..+++-|||+||++|+|..|-||||
T Consensus 386 lq~TyNL~TqLpqFv~~fq~Rer~g~~N~WI~KPWNlAR~~Dt~vT~~L~~IIRm~EtgPKiv~kYIe~P~LFr~gKFDl 465 (631)
T KOG2155|consen 386 LQLTYNLNTQLPQFVARFQNRERNGQHNVWIVKPWNLARGMDTTVTEDLNQIIRMIETGPKIVCKYIERPLLFRNGKFDL 465 (631)
T ss_pred cccccccccchHHHHHHHHHHHhcCcCceEEechhhhhhcccchhhhhHHHHHHHHhcCchHHHHhcCCcceeecCccce
Confidence 999999999999999877532 2999999999999999999999999986 3678899999999999998889999
Q ss_pred EEEEEEeeecCCEEEEEeceEEEeccCCCCCCCCCCCCCceeEee--eccc---cccCCCcccccccCCccChhHHHHHH
Q psy13386 205 RVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLT--NYSV---NKHSISFIHDEEVGSKRKISTINQWF 279 (714)
Q Consensus 205 RvYVLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~~~Nl~d~~~HLT--NysI---nK~s~nf~~dee~Gsk~sLs~l~~~L 279 (714)
|..||+.|++||++|+|+-.++||+..+|+. .|+.+...|+| ||-. |++- ..|..-+
T Consensus 466 RYiVllrsi~Pl~~yvy~~FWiRfsnn~fsL---~~f~dyEtHFTVmNY~~kl~q~~c---------------eeFi~~~ 527 (631)
T KOG2155|consen 466 RYIVLLRSIAPLTAYVYNRFWIRFSNNEFSL---SNFEDYETHFTVMNYLEKLLQMKC---------------EEFIGEF 527 (631)
T ss_pred EEEEEEccccchhhhheeheeeeecCCccch---hhhhhhhhhhhhhhHHHHHhhccH---------------HHHHHHH
Confidence 9999999999999999999999999999994 68899999999 7752 2222 2333333
Q ss_pred HHc--CCChhHHHHHHHHHHHHHHHHhhhhHHHhhcccCCCCCCCCCeEEEEEEEEEe--cCC--CCeEEEEeecCCCCC
Q psy13386 280 CRM--GYDTDLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILL--DDT--LNPYVLEVNHSPSFY 353 (714)
Q Consensus 280 ~~~--G~d~~~lw~~IkdiIikTllAa~p~L~~~y~~~~~~~~~~~~cFELlGfDfLL--D~~--lKPWLLEVN~sPSl~ 353 (714)
++. ...+..+-..|..+|.+.+.+|...- . .|. ....++.-.+||+|+|+ |.+ ++|-|||||.+|++.
T Consensus 528 ek~yp~~pw~dvq~~i~~aire~~eaaak~~-~---e~g--~a~~p~sramygvDlml~~~~~pVmq~qILEVNFnPDc~ 601 (631)
T KOG2155|consen 528 EKGYPCFPWEDVQCSIVPAIREPFEAAAKLN-P---ECG--AALLPNSRAMYGVDLMLAGDLTPVMQPQILEVNFNPDCK 601 (631)
T ss_pred hhcCCCCCcchhhhHHHHHHHHHHhhhhccC-C---ccc--ccCCchhhhhhhheeeeccCCCccccceeEEEecCcchH
Confidence 321 13356666777778887777664321 1 111 12346678899999999 666 899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCch
Q psy13386 354 TDTEIDVEIKEQVLRDTFILCNLNSS 379 (714)
Q Consensus 354 tds~lD~~vK~~LI~DtL~Ll~i~~~ 379 (714)
..|..+. .+..++|..+.++..
T Consensus 602 RACrYhp----dFfnnVFstLFLDep 623 (631)
T KOG2155|consen 602 RACRYHP----DFFNNVFSTLFLDEP 623 (631)
T ss_pred HHhhcCh----hHHHhHHHHhhccCC
Confidence 9999885 566777777766543
No 6
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.83 E-value=5e-19 Score=184.83 Aligned_cols=214 Identities=25% Similarity=0.331 Sum_probs=147.0
Q ss_pred cchhhHHHHHHHHHHHHHCCCCCCcccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchh---------
Q psy13386 106 ELCRKNLLAKNLNQMKIQYPNDYNFFPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRH--------- 176 (714)
Q Consensus 106 ~LtRKd~LarnL~rm~k~~p~~y~f~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~e--------- 176 (714)
.+..|..+++.|.+ .|..-.|+|+|..+.. .+++..++++++. .++||..|++|+||..+.....
T Consensus 15 ~~~~Kw~v~~~L~~----~~~l~~~LP~T~~~~~-~~~l~~~L~~y~~-vylKP~~Gs~G~gI~ri~~~~~~~~~~~~~~ 88 (262)
T PF14398_consen 15 GFFDKWEVYKALSR----DPELRPYLPETELLTS-FEDLREMLNKYKS-VYLKPDNGSKGKGIIRIEKKGGGYRIQYRNK 88 (262)
T ss_pred CCCCHHHHHHHHHc----CCcchhhCCCceEcCC-HHHHHHHHHHCCE-EEEEeCCCCCCccEEEEEEeCCEEEEEEccC
Confidence 35688877776664 5666689999999844 6778888887754 4569999999999966543332
Q ss_pred -------------hhh-----ccCCceEEeecccCcccCCCceEEEEEEEEEeeecCCEEEEEeceEEEeccCCCCCCCC
Q psy13386 177 -------------LSQ-----EQNRNYICQEYIANPFLIDGLKFDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQ 238 (714)
Q Consensus 177 -------------I~~-----~~~~~~IVQkYI~nPlLIdGrKFDLRvYVLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~~ 238 (714)
+.. .....||||++|+ ...++|+.||+|+.|.-.. -..|......+|+|....
T Consensus 89 ~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~-l~~~~gr~fD~RvlvqK~~---~G~W~vtg~~~Rva~~~~----- 159 (262)
T PF14398_consen 89 KKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIP-LATYDGRPFDFRVLVQKNG---SGKWQVTGIVARVAKPGS----- 159 (262)
T ss_pred CceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCcc-ccccCCCeEEEEEEEEECC---CCCEEEEEEEEEEcCCCC-----
Confidence 111 2466999999997 6778999999999997544 456999999999988742
Q ss_pred CCCCCceeEeeeccccccCCCcccccccCCccChhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHhhhhHHHhhcccCCC
Q psy13386 239 GNLTNKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPR 318 (714)
Q Consensus 239 ~Nl~d~~~HLTNysInK~s~nf~~dee~Gsk~sLs~l~~~L~~~G~d~~~lw~~IkdiIikTllAa~p~L~~~y~~~~~~ 318 (714)
-+||.+- .|...++.. .|... .....+.++|+++...+..+ +...| +
T Consensus 160 --------ivTN~~~------------GG~~~~~~~---~l~~~-~~~~~~~~~l~~~a~~ia~~----le~~~----~- 206 (262)
T PF14398_consen 160 --------IVTNLSQ------------GGTALPFEE---VLRQS-EEAEKIREELEDLALEIAQA----LEKHF----G- 206 (262)
T ss_pred --------ceeccCC------------CceecCHHH---HHHhh-hhHHHHHHHHHHHHHHHHHH----HHHhc----C-
Confidence 2455431 243444444 33332 22455666666665544433 33322 1
Q ss_pred CCCCCCeEEEEEEEEEecCCCCeEEEEeecCCCCCCCChh-hHHHHHHHHHHHHH
Q psy13386 319 HNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEI-DVEIKEQVLRDTFI 372 (714)
Q Consensus 319 ~~~~~~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds~l-D~~vK~~LI~DtL~ 372 (714)
.+ |..||+||.||.+|++||||||+.|+......+ |.++...++...|.
T Consensus 207 ----~~-~gElGiDl~iD~~g~iWliEvN~kP~~~~~~~~~~~~~~~~~~~~pl~ 256 (262)
T PF14398_consen 207 ----GH-LGELGIDLGIDKNGKIWLIEVNSKPGKFDFRDIGDKELIRQSYRRPLE 256 (262)
T ss_pred ----Cc-eeEEEEEEEEcCCCCEEEEEEeCCCCcchhhcccchHHHHHHHHHHHH
Confidence 12 445599999999999999999999998877765 55566666655554
No 7
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=98.94 E-value=4.7e-09 Score=104.46 Aligned_cols=73 Identities=30% Similarity=0.512 Sum_probs=37.0
Q ss_pred ccceeccCcchHHHHHHHhcC-CcEEEEeCCCCCCCCcEEEEccchhhhhc------cCCceEEeecccCcccCCCceEE
Q psy13386 131 FPQTWILPRDNREVHAFLTSK-KATVIVKPDNGSNGLGISLIRNLRHLSQE------QNRNYICQEYIANPFLIDGLKFD 203 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~-k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------~~~~~IVQkYI~nPlLIdGrKFD 203 (714)
+|+|++.-+ .++...+++.. ....|+||..|+.|+|++++++.+++... ....+++|+||..+ +| -|
T Consensus 18 vP~t~~~~~-~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~~~~~~~Q~fI~~~---~g--~d 91 (190)
T PF08443_consen 18 VPETRVTNS-PEEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRLENPILVQEFIPKD---GG--RD 91 (190)
T ss_dssp ---EEEESS-HHHHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH-----TTT-EEEE----S---S-----
T ss_pred CCCEEEECC-HHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhccCcceEeccccCC---CC--cE
Confidence 699988754 44444444433 35589999999999999999998876642 35788999999743 22 69
Q ss_pred EEEEEE
Q psy13386 204 MRVYTL 209 (714)
Q Consensus 204 LRvYVL 209 (714)
+|+||+
T Consensus 92 ~Rv~Vi 97 (190)
T PF08443_consen 92 LRVYVI 97 (190)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999996
No 8
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=98.91 E-value=1.8e-08 Score=103.72 Aligned_cols=74 Identities=27% Similarity=0.324 Sum_probs=54.2
Q ss_pred cccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc---------cCCceEEeecccCcccCCCc
Q psy13386 130 FFPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE---------QNRNYICQEYIANPFLIDGL 200 (714)
Q Consensus 130 f~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~---------~~~~~IVQkYI~nPlLIdGr 200 (714)
-+|+|+.+.. .+++..+.....-.+|+||..|+.|+|++++++.+++... ....+++|+||+.+ .
T Consensus 102 ~~P~t~~~~~-~~~~~~~~~~~~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~~~-----~ 175 (277)
T TIGR00768 102 PQPRTGLAGS-PEEALKLIEEIGFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKKP-----G 175 (277)
T ss_pred CCCCEEEeCC-HHHHHHHHHhcCCCEEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeecCC-----C
Confidence 3699988854 5556666555444789999999999999999998876421 12479999999722 1
Q ss_pred eEEEEEEEE
Q psy13386 201 KFDMRVYTL 209 (714)
Q Consensus 201 KFDLRvYVL 209 (714)
-+|+|++++
T Consensus 176 ~~~~rv~v~ 184 (277)
T TIGR00768 176 GRDIRVFVV 184 (277)
T ss_pred CceEEEEEE
Confidence 269999874
No 9
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=98.90 E-value=9.4e-08 Score=99.37 Aligned_cols=72 Identities=29% Similarity=0.442 Sum_probs=51.1
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc----------cCCceEEeecccCcccCCCc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE----------QNRNYICQEYIANPFLIDGL 200 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~----------~~~~~IVQkYI~nPlLIdGr 200 (714)
+|.|+.+.. ..++........-.+|+||..|+.|+|++++.+.+++... ....+++|+||..+
T Consensus 102 ~P~t~~~~~-~~~~~~~~~~~~~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~------ 174 (280)
T TIGR02144 102 TPRTYLAFD-REAALKLAEALGYPVVLKPVIGSWGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKP------ 174 (280)
T ss_pred CCCeEeeCC-HHHHHHHHHHcCCCEEEEECcCCCcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCC------
Confidence 688887743 4444444433334589999999999999999988876431 12469999999633
Q ss_pred eEEEEEEEE
Q psy13386 201 KFDMRVYTL 209 (714)
Q Consensus 201 KFDLRvYVL 209 (714)
-.|+|++|+
T Consensus 175 ~~d~~v~vi 183 (280)
T TIGR02144 175 GRDIRVFVI 183 (280)
T ss_pred CCceEEEEE
Confidence 368999885
No 10
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=98.83 E-value=7.4e-08 Score=103.97 Aligned_cols=45 Identities=22% Similarity=0.506 Sum_probs=33.1
Q ss_pred cccceeccCc---chHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccch
Q psy13386 130 FFPQTWILPR---DNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLR 175 (714)
Q Consensus 130 f~P~TfiLP~---d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~ 175 (714)
-+|+||.+-. ...++..+++.. ...|+||..|++|+||.++.+.+
T Consensus 51 pvP~T~~~~s~~~~~~~l~~~~~~~-~~VVVKPl~Gs~GrGI~~i~~~~ 98 (317)
T TIGR02291 51 TVPELYGVIHNQAEVKTIHNIVKDH-PDFVIKPAQGSGGKGILVITSRK 98 (317)
T ss_pred CCCCEEEecCchhhHHHHHHHHccC-CCEEEEECCCCCccCeEEEEecc
Confidence 3799887643 344566666544 45789999999999999997653
No 11
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=98.82 E-value=4.5e-08 Score=103.88 Aligned_cols=74 Identities=23% Similarity=0.347 Sum_probs=51.7
Q ss_pred cccceeccCcchHHHHHHHhcC-CcEEEEeCCCCCCCCcEEEEccchhhhh------ccCCceEEeecccCcccCCCceE
Q psy13386 130 FFPQTWILPRDNREVHAFLTSK-KATVIVKPDNGSNGLGISLIRNLRHLSQ------EQNRNYICQEYIANPFLIDGLKF 202 (714)
Q Consensus 130 f~P~TfiLP~d~~~f~~~~k~~-k~~WIvKP~~gsrGrGI~l~~~l~eI~~------~~~~~~IVQkYI~nPlLIdGrKF 202 (714)
-+|+|..+.. ..++...+... ...+|+||..|+.|+|++++++.+++.. .....++||+||... .-.
T Consensus 113 p~P~t~~~~~-~~~~~~~~~~~~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~~~~~~lvQe~I~~~-----~g~ 186 (300)
T PRK10446 113 DLPVTGIAHS-PDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEA-----QGC 186 (300)
T ss_pred CCCCEEEeCC-HHHHHHHHHHhCCCCEEEEECCCCCcccEEEEcCHHHHHHHHHHHHhcCCCEEEEeeeccC-----CCc
Confidence 3688877643 33344444332 2468999999999999999988766542 134679999999622 247
Q ss_pred EEEEEEE
Q psy13386 203 DMRVYTL 209 (714)
Q Consensus 203 DLRvYVL 209 (714)
|+|++|+
T Consensus 187 d~rv~vi 193 (300)
T PRK10446 187 DIRCLVV 193 (300)
T ss_pred eEEEEEE
Confidence 9999985
No 12
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=98.73 E-value=8.6e-07 Score=93.56 Aligned_cols=70 Identities=21% Similarity=0.416 Sum_probs=50.0
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhh------ccCCceEEeecccCcccCCCceEEE
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQ------EQNRNYICQEYIANPFLIDGLKFDM 204 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~------~~~~~~IVQkYI~nPlLIdGrKFDL 204 (714)
.|+|+.+.. .+++..+.....-.+|+||..++.|+||.++.+.+++.. .....++||+||. |+ ++
T Consensus 113 ~p~~~~~~~-~~~~~~~~~~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~------G~--E~ 183 (304)
T PRK01372 113 TPPWIVLTR-EEDLLAAIDKLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFKYDDEVLVEKYIK------GR--EL 183 (304)
T ss_pred CCCEEEEeC-cchHHHHHhhcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEcccC------CE--EE
Confidence 677777754 233444444434568999999999999999999888753 1356799999995 54 66
Q ss_pred EEEEE
Q psy13386 205 RVYTL 209 (714)
Q Consensus 205 RvYVL 209 (714)
++.|+
T Consensus 184 ~v~vi 188 (304)
T PRK01372 184 TVAVL 188 (304)
T ss_pred EEEEE
Confidence 77654
No 13
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=98.72 E-value=4.8e-07 Score=97.72 Aligned_cols=142 Identities=22% Similarity=0.310 Sum_probs=83.8
Q ss_pred CcEEEEeCCCCCCCCcEEEEccchhhhh------ccCCceEEeecccCcccCCCceEEEEEEEEEeeecCCEEEEEeceE
Q psy13386 152 KATVIVKPDNGSNGLGISLIRNLRHLSQ------EQNRNYICQEYIANPFLIDGLKFDMRVYTLITSFDPMRIYVHKDGI 225 (714)
Q Consensus 152 k~~WIvKP~~gsrGrGI~l~~~l~eI~~------~~~~~~IVQkYI~nPlLIdGrKFDLRvYVLVTS~dPLrIYlY~eGl 225 (714)
.-.||+||..++.|.||.++++.+++.. .....++||+||. |+ ++++-|+.. ++ .+. --|-
T Consensus 162 ~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~------G~--E~~v~vl~~--~~-~~~--~~~e 228 (333)
T PRK01966 162 GLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK------GR--EIECAVLGN--DP-KAS--VPGE 228 (333)
T ss_pred CCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC------CE--EEEEEEECC--CC-eEc--ccEE
Confidence 3569999999999999999999988764 1357899999995 64 666666543 11 111 1111
Q ss_pred EEeccCCCCCCCCCCCCCceeEeeeccccccCCCcccccccCCccChhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHhh
Q psy13386 226 VRFATVKYERPKQGNLTNKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKTVLSAH 305 (714)
Q Consensus 226 vRfAt~~Y~~p~~~Nl~d~~~HLTNysInK~s~nf~~dee~Gsk~sLs~l~~~L~~~G~d~~~lw~~IkdiIikTllAa~ 305 (714)
+.....-|+.. .+...+...|.+. ... .+.+.++|.++..+++.+.
T Consensus 229 i~~~~~~~d~~-~ky~~~~~~~~~P-------------------------------a~l-~~~~~~~i~~~a~~~~~aL- 274 (333)
T PRK01966 229 IVKPDDFYDYE-AKYLDGSAELIIP-------------------------------ADL-SEELTEKIRELAIKAFKAL- 274 (333)
T ss_pred EecCCceEcHH-HccCCCCceEEeC-------------------------------CCC-CHHHHHHHHHHHHHHHHHh-
Confidence 11111111100 0000000001110 001 2344555555555544332
Q ss_pred hhHHHhhcccCCCCCCCCCeEEEEEEEEEecCCCCeEEEEeecCCCCCCCChh
Q psy13386 306 PNIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEI 358 (714)
Q Consensus 306 p~L~~~y~~~~~~~~~~~~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds~l 358 (714)
+|-...++||++|.+++|||||||..|+|+..+-+
T Consensus 275 ------------------g~~G~~rvDf~~~~~g~~~vlEiNt~Pg~t~~s~~ 309 (333)
T PRK01966 275 ------------------GCSGLARVDFFLTEDGEIYLNEINTMPGFTPISMY 309 (333)
T ss_pred ------------------CCcceEEEEEEEcCCCCEEEEEeeCCCCCCcccHH
Confidence 35567899999999999999999999999876543
No 14
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=98.70 E-value=4.8e-07 Score=98.21 Aligned_cols=148 Identities=15% Similarity=0.202 Sum_probs=93.0
Q ss_pred HHHHHHHHhCCCEEcC--C------CCCeEEEEeCCCCCh------hhhhhcCcCceecccCCCCcchhhHHHHHHHHHH
Q psy13386 55 ELVGRVARQCGMTVVD--D------KSLWDVLWSDPCIGP------DTHRRMKRFQRTNHFPLIMELCRKNLLAKNLNQM 120 (714)
Q Consensus 55 ~~Vr~vl~~~G~~~v~--e------~~~wdl~W~d~~~~~------e~~~~l~~~QkVNHFPG~~~LtRKd~LarnL~rm 120 (714)
..+...+++.|...+. . ...+|++-....-.. ++...-...-.||.+.....+..|..+...|.+.
T Consensus 39 ~~l~~~~~~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv~vidp~~ai~~~~dR~~~~~~L~~~ 118 (328)
T PLN02941 39 PSLEALARSKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDVTVLDPPDAIQRLHNRQSMLQVVADL 118 (328)
T ss_pred HHHHHHHHHCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHHCCCcEEECCHHHHHHHHHHHHHHHHHHHc
Confidence 3445677888987542 1 135666655432111 1111112234678877777778887777766653
Q ss_pred HHHCCCCCCcccceeccCcchHHHHHHHhcCC--cEEEEeCCCC---CCCCcEEEEccchhhhhccCCceEEeecccCcc
Q psy13386 121 KIQYPNDYNFFPQTWILPRDNREVHAFLTSKK--ATVIVKPDNG---SNGLGISLIRNLRHLSQEQNRNYICQEYIANPF 195 (714)
Q Consensus 121 ~k~~p~~y~f~P~TfiLP~d~~~f~~~~k~~k--~~WIvKP~~g---srGrGI~l~~~l~eI~~~~~~~~IVQkYI~nPl 195 (714)
...-....-..|+|+++.+...++.......+ --.|+||..| +.|+|+.++.+.+.+.. ....+++|+||.++
T Consensus 119 ~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~-l~~p~~lQEfVnh~- 196 (328)
T PLN02941 119 KLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSK-LEPPLVLQEFVNHG- 196 (328)
T ss_pred CCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEEecCHHHHHh-cCCcEEEEEecCCC-
Confidence 31111122358999998764333322222222 4579999999 99999999999988874 33479999999875
Q ss_pred cCCCceEEEEEEEE
Q psy13386 196 LIDGLKFDMRVYTL 209 (714)
Q Consensus 196 LIdGrKFDLRvYVL 209 (714)
| .|+|+||+
T Consensus 197 ---g--~d~RVfVv 205 (328)
T PLN02941 197 ---G--VLFKVYVV 205 (328)
T ss_pred ---C--EEEEEEEE
Confidence 3 59999996
No 15
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.65 E-value=3.7e-07 Score=87.87 Aligned_cols=88 Identities=25% Similarity=0.352 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHHHHHCCCCCCcccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc-------
Q psy13386 108 CRKNLLAKNLNQMKIQYPNDYNFFPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------- 180 (714)
Q Consensus 108 tRKd~LarnL~rm~k~~p~~y~f~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------- 180 (714)
..|..+.+.+++. ... +|+++.+.. ..++.+....-...||+||..|+.|+|++++++.+++...
T Consensus 3 ~dK~~~~~~~~~~------gv~-~P~~~~~~~-~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~ 74 (184)
T PF13535_consen 3 NDKYRMRELLKKA------GVP-VPKTRIVDS-EEELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIRED 74 (184)
T ss_dssp CCHHHHHHHHHHH------TS-----EEEECS-HHHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc------CcC-CCCEEEECC-HHHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHh
Confidence 4565555554432 112 788887754 5667666655446799999999999999999999988742
Q ss_pred ---cCCceEEeecccCcccCCCceEEEEEEEE
Q psy13386 181 ---QNRNYICQEYIANPFLIDGLKFDMRVYTL 209 (714)
Q Consensus 181 ---~~~~~IVQkYI~nPlLIdGrKFDLRvYVL 209 (714)
....+|||+||. |.-|.+++++.
T Consensus 75 ~~~~~~~~ivqe~i~------g~e~~~~~~~~ 100 (184)
T PF13535_consen 75 SPLGNGPVIVQEYIP------GDEYSVDGVVD 100 (184)
T ss_dssp HS-HSSSEEEEE---------SEEEEEEEEEE
T ss_pred cccCCccEEEEEeee------eeeEEEEEEEE
Confidence 135799999996 67777777664
No 16
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=98.62 E-value=1.4e-06 Score=92.36 Aligned_cols=51 Identities=27% Similarity=0.434 Sum_probs=40.5
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhhhc------cCCceEEeecccCcccCCCceEEEEEEEEEe
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLSQE------QNRNYICQEYIANPFLIDGLKFDMRVYTLIT 211 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~~~------~~~~~IVQkYI~nPlLIdGrKFDLRvYVLVT 211 (714)
-.||+||..++.|.||.++.+.+++... ....++||+||+ |+ ++++-|+..
T Consensus 126 ~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~vlVEeyI~------G~--E~sv~vl~~ 182 (299)
T PRK14571 126 YPCVVKPRREGSSIGVFICESDEEFQHALKEDLPRYGSVIVQEYIP------GR--EMTVSILET 182 (299)
T ss_pred CCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhhCCcEEEEcccc------ce--EEEEEEEcC
Confidence 5699999999999999999998887531 345799999994 54 777777654
No 17
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=98.62 E-value=1.2e-06 Score=95.06 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=30.8
Q ss_pred CeEEEEEEEEEecCCCCeEEEEeecCCCCCCCChh
Q psy13386 324 ACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEI 358 (714)
Q Consensus 324 ~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds~l 358 (714)
+|..+.++||++|.++++||+|||+.|+|+..+.+
T Consensus 284 g~~G~~rvDf~l~~~g~~~llEINt~Pg~t~~S~~ 318 (343)
T PRK14568 284 GCRGLARVDMFLQEDGTVVLNEVNTLPGFTSYSRY 318 (343)
T ss_pred CCCcEEEEEEEEeCCCCEEEEEeeCCCCCCccCHH
Confidence 46788999999999999999999999999876544
No 18
>KOG2158|consensus
Probab=98.58 E-value=5.9e-09 Score=114.76 Aligned_cols=173 Identities=33% Similarity=0.487 Sum_probs=125.7
Q ss_pred CCCeEEEEEEEEEecCCCCeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCCchhhHHhHHHHHHHHHHHhhcCCC
Q psy13386 322 MTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEIDVEIKEQVLRDTFILCNLNSSIKRKVLQEERLEVQRRLFKRPE 401 (714)
Q Consensus 322 ~~~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds~lD~~vK~~LI~DtL~Ll~i~~~~k~~~~ee~k~~~~~Rll~~~~ 401 (714)
-..||+.+|||+++ ...+||++|+|.-|++.++...+..++..++..++.++++..+++.......+++..+|+.....
T Consensus 11 ~~v~~~~~~~~~~~-~~~~~w~~~~~~~p~~~~~~~~~~~~~r~~~~~~l~~~~i~~s~~~~~~~~~~~~~~~~~~~q~~ 89 (565)
T KOG2158|consen 11 ESVCFEVLGFDILL-RKLKPWLLEINRAPSFGTDQKIDYDVKRGVLLNALKLLNIRTSDKRRNLAKQKAEAQRRLYGQNS 89 (565)
T ss_pred eeeehHhhhhhhhh-hhcccccchhhcCCCCCCCcCcchhhhhhhhhhcccccCCCccchhcCchhhhcccccccccCcc
Confidence 36799999999999 99999999999999999999999999999999999999999999887776666665555442211
Q ss_pred Cc-------c-----------hHHHhhhhhhH-----hHHHHHhcCCCeEEeccCCCcccHHHHHhhhccCcchhhhhhh
Q psy13386 402 RE-------E-----------DEEDRQGCKER-----QWAWERAHMGNFRLLYPCQDGDKYDSMCRAIESASYYKDTFSS 458 (714)
Q Consensus 402 ~~-------~-----------~~~~~~~~~~~-----~~~~E~~~~G~F~rIyP~~~~~~Y~~~~~~~~~~sl~~~t~~s 458 (714)
-. + .++......++ ..+.|..++|++++|||......-+.+. .+.+.+|+.....
T Consensus 90 i~~l~p~s~~~~~~r~~~~~~~~~~~e~~sq~~kti~~~~~~~~~~g~~~~i~~~k~k~~~~~~~--~l~~v~f~~~~~~ 167 (565)
T KOG2158|consen 90 IKRLLPGSSDWEQQRHQLERRKEELKERLAQVRKQISREEHENRHMGNYRRIYPPEDKALLEKYE--NLLAVAFQTFLSG 167 (565)
T ss_pred hhhcCCCCCcccccccccccccccccccccccchhhhhHhhhhhhhcceeeecChhhhhhhhhhh--hHHHHhhchhhhc
Confidence 00 0 11111111111 2357889999999999998665333332 3337778777776
Q ss_pred hhhhHHHHHHHHHHHhhhhcCCCCCCCCccchhhhhcccccCCCcccccccCC
Q psy13386 459 NMRSMLGRAHRQDIDMRRDNHGVTPRPSKDTLDSIYGKKRRKPGDDVALMKKP 511 (714)
Q Consensus 459 ~~ree~~~~~~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (714)
++-. .|++- +-+.+.+.++++|+... +|..+++.+|+.|
T Consensus 168 ~~~~----fqrvn------~fPgm~e~~kd~Lsl~~----mqkifpeey~fyp 206 (565)
T KOG2158|consen 168 RAAS----FQREN------NFPGMREKEKDILDLLE----MQKIFPEEYMFYP 206 (565)
T ss_pred cchh----hhhhh------cCchHHHHHHHHHhHHH----HHhcChHHhcCCC
Confidence 6655 34433 45555666678898655 8999999999998
No 19
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.51 E-value=3.4e-06 Score=89.33 Aligned_cols=50 Identities=26% Similarity=0.477 Sum_probs=39.8
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhhh------ccCCceEEeecccCcccCCCceEEEEEEEEE
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLSQ------EQNRNYICQEYIANPFLIDGLKFDMRVYTLI 210 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~~------~~~~~~IVQkYI~nPlLIdGrKFDLRvYVLV 210 (714)
-.+|+||..++.|+||.++.+.+++.. .....++||+|| +|+ ++++.|+.
T Consensus 147 ~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i------~G~--e~~v~vi~ 202 (315)
T TIGR01205 147 FPVIVKPAREGSSVGVSKVKSEEELQAALDEAFEYDEEVLVEQFI------KGR--ELEVSILG 202 (315)
T ss_pred CCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCC------CCE--EEEEEEEC
Confidence 568999999999999999999888763 135679999998 354 77777754
No 20
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=98.51 E-value=7.1e-06 Score=89.25 Aligned_cols=50 Identities=20% Similarity=0.342 Sum_probs=39.0
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhhh------ccCCceEEeecccCcccCCCceEEEEEEEEE
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLSQ------EQNRNYICQEYIANPFLIDGLKFDMRVYTLI 210 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~~------~~~~~~IVQkYI~nPlLIdGrKFDLRvYVLV 210 (714)
-.+|+||..++.+.||.++++.+++.. .....+|||+||. |+ ++.+-|+.
T Consensus 172 ~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~------G~--E~sv~vi~ 227 (347)
T PRK14572 172 FPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFESDSKVMSQSFLS------GT--EVSCGVLE 227 (347)
T ss_pred CCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCcc------cE--EEEEEEEe
Confidence 568999999999999999999888753 1346799999994 64 55666554
No 21
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=2.1e-06 Score=92.98 Aligned_cols=182 Identities=25% Similarity=0.277 Sum_probs=104.6
Q ss_pred CcCceecccCCCCcchhhHHHHHHHHHHHHHCCCCCCcccceeccCcchHHHHHHHhcCC-cEEEEeCCCCCCCCcEEEE
Q psy13386 93 KRFQRTNHFPLIMELCRKNLLAKNLNQMKIQYPNDYNFFPQTWILPRDNREVHAFLTSKK-ATVIVKPDNGSNGLGISLI 171 (714)
Q Consensus 93 ~~~QkVNHFPG~~~LtRKd~LarnL~rm~k~~p~~y~f~P~TfiLP~d~~~f~~~~k~~k-~~WIvKP~~gsrGrGI~l~ 171 (714)
...-.||..-+...-..|-.....|.+. --.+|.|.+.-.. .+...+...+- .--|+||..|+.|+||+++
T Consensus 103 ~G~~viN~p~~i~~~~nK~~~~~~l~~~-------~ipvP~T~i~~~~-~~~~~~~~~~~g~pvVlKp~~Gs~G~gV~~v 174 (318)
T COG0189 103 KGVPVINDPQSIRRCRNKLYTTQLLAKA-------GIPVPPTLITRDP-DEAAEFVAEHLGFPVVLKPLDGSGGRGVFLV 174 (318)
T ss_pred cCCeEECCHHHHHhhhhHHHHHHHHHhc-------CCCCCCEEEEcCH-HHHHHHHHHhcCCCEEEeeCCCCCccceEEe
Confidence 3345667644444444554444433321 1357999988553 33344444332 5679999999999999999
Q ss_pred ccch-hhhh-------ccCCceEEeecccCcccCCCceEEEEEEEEEeeecCCEEEEEeceEEEeccCCCCCCCCCCCCC
Q psy13386 172 RNLR-HLSQ-------EQNRNYICQEYIANPFLIDGLKFDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTN 243 (714)
Q Consensus 172 ~~l~-eI~~-------~~~~~~IVQkYI~nPlLIdGrKFDLRvYVLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~~~Nl~d 243 (714)
++.+ ++.. .....+++|+||..+. =|.|.+|++-. .-+=.| ++.|.+... +.
T Consensus 175 ~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~------~~~rrivv~~~---~~~~~y--~~~R~~~~~-------~~-- 234 (318)
T COG0189 175 EDADPELLSLLETLTQEGRKLIIVQEYIPKAK------RDDRRVLVGGG---EVVAIY--ALARIPASG-------DF-- 234 (318)
T ss_pred cCCChhHHHHHHHHhccccceEehhhhcCccc------CCcEEEEEeCC---EEeEEe--eeccccCCC-------Cc--
Confidence 9998 6553 1224699999998554 24555555433 222223 566654321 11
Q ss_pred ceeEeeeccccccCCCcccccccCCccChhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHhhhhHHHhhcccCCCCCCCC
Q psy13386 244 KYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMT 323 (714)
Q Consensus 244 ~~~HLTNysInK~s~nf~~dee~Gsk~sLs~l~~~L~~~G~d~~~lw~~IkdiIikTllAa~p~L~~~y~~~~~~~~~~~ 323 (714)
=||.+. |..-. ..++=++++++.+++. +.|
T Consensus 235 ----R~N~a~-------------Gg~~e--------------~~~l~~e~~elA~kaa----~~l--------------- 264 (318)
T COG0189 235 ----RSNLAR-------------GGRAE--------------PCELTEEEEELAVKAA----PAL--------------- 264 (318)
T ss_pred ----eeeccc-------------ccccc--------------ccCCCHHHHHHHHHHH----HHh---------------
Confidence 123221 22211 1222233444444432 222
Q ss_pred CeEEEEEEEEEecCCCCeEEEEeecCCCCCC
Q psy13386 324 ACFQLLGFDILLDDTLNPYVLEVNHSPSFYT 354 (714)
Q Consensus 324 ~cFELlGfDfLLD~~lKPWLLEVN~sPSl~t 354 (714)
-..++|+||+.+ +...+++|||.+|.+-.
T Consensus 265 -Gl~~~GVDiie~-~~g~~V~EVN~sP~~~~ 293 (318)
T COG0189 265 -GLGLVGVDIIED-KDGLYVTEVNVSPTGKG 293 (318)
T ss_pred -CCeEEEEEEEec-CCCcEEEEEeCCCcccc
Confidence 245789999999 77899999999997754
No 22
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=98.48 E-value=1.6e-06 Score=88.03 Aligned_cols=139 Identities=20% Similarity=0.375 Sum_probs=79.2
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhhh------ccCCceEEeecccCcccCCCceEEEEEEEEEeeecCCEEE-----EE
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLSQ------EQNRNYICQEYIANPFLIDGLKFDMRVYTLITSFDPMRIY-----VH 221 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~~------~~~~~~IVQkYI~nPlLIdGrKFDLRvYVLVTS~dPLrIY-----lY 221 (714)
-.+|+||..++.+.||..+++.+++.. ...+..+|++|| .|+-|-+- |+= .+..++. ++
T Consensus 34 ~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI------~G~E~tv~--vl~--~~~~~~~~~~ei~~ 103 (203)
T PF07478_consen 34 FPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKYDDDVLVEEFI------SGREFTVG--VLG--NGEPRVLPPVEIVF 103 (203)
T ss_dssp SSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTTHSEEEEEE--------SSEEEEEE--EEE--SSSTEEEEEEEEEE
T ss_pred CCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhhcceEEEEeee------cccceEEE--EEe--cCCcccCceEEEEc
Confidence 568999999999999999999988764 245689999998 46654433 332 1123322 22
Q ss_pred eceEEEeccCCCCCCCCCCCCCceeEeeeccccccCCCcccccccCCccChhHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q psy13386 222 KDGIVRFATVKYERPKQGNLTNKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKTV 301 (714)
Q Consensus 222 ~eGlvRfAt~~Y~~p~~~Nl~d~~~HLTNysInK~s~nf~~dee~Gsk~sLs~l~~~L~~~G~d~~~lw~~IkdiIikTl 301 (714)
..++..+.. +|.. .+....+.. . ... .+.+.++|+++..+++
T Consensus 104 ~~~~~d~~~-Ky~~-----~~~~~~~~~---------------------p----------a~l-~~~~~~~i~~~a~~a~ 145 (203)
T PF07478_consen 104 PSEFYDYEA-KYQP-----ADSETEYII---------------------P----------ADL-SEELQEKIKEIAKKAF 145 (203)
T ss_dssp SSSEEEHHH-HHSG-----CCSCEEEES---------------------S-----------SS--HHHHHHHHHHHHHHH
T ss_pred CCCceehhh-eecc-----CCCceEEEe---------------------c----------CCC-CHHHHHHHHHHHHHHH
Confidence 222222211 1110 000000000 0 001 2345556666655544
Q ss_pred HHhhhhHHHhhcccCCCCCCCCCeEEEEEEEEEecCCCCeEEEEeecCCCCCCCChh
Q psy13386 302 LSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEI 358 (714)
Q Consensus 302 lAa~p~L~~~y~~~~~~~~~~~~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds~l 358 (714)
.+. +|-..-.+||.+|++++||+||||+.|+|+..+.+
T Consensus 146 ~~l-------------------g~~~~~RiD~rv~~~g~~~~lEiNt~PGlt~~S~~ 183 (203)
T PF07478_consen 146 KAL-------------------GCRGYARIDFRVDEDGKPYFLEINTIPGLTPTSLF 183 (203)
T ss_dssp HHT-------------------TTCSEEEEEEEEETTTEEEEEEEESS-G-STTSHH
T ss_pred HHH-------------------cCCCceeEEEEeccCCceEEEeccCcccccCCCHH
Confidence 332 35556789999999999999999999999977654
No 23
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=98.45 E-value=3.8e-06 Score=89.35 Aligned_cols=49 Identities=16% Similarity=0.426 Sum_probs=38.3
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhhh-----ccCCceEEeecccCcccCCCceEEEEEEEE
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLSQ-----EQNRNYICQEYIANPFLIDGLKFDMRVYTL 209 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~~-----~~~~~~IVQkYI~nPlLIdGrKFDLRvYVL 209 (714)
-.+|+||..++.|.|++++++.+++.. .....++||+||+ |+ ++.+.|+
T Consensus 131 ~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~~~~~lvEefI~------G~--E~tv~vl 184 (296)
T PRK14569 131 FPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYGEVMIEQWVT------GK--EITVAIV 184 (296)
T ss_pred CCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHhcCCEEEEcccc------cE--EEEEEEE
Confidence 468999999999999999999988763 1235789999993 65 5666654
No 24
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=98.42 E-value=4.3e-06 Score=91.96 Aligned_cols=146 Identities=18% Similarity=0.243 Sum_probs=83.9
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhhh------ccCCceEEeecccCcccCCCceEEEEEEEEEeeecCCEEEEEeceEE
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLSQ------EQNRNYICQEYIANPFLIDGLKFDMRVYTLITSFDPMRIYVHKDGIV 226 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~~------~~~~~~IVQkYI~nPlLIdGrKFDLRvYVLVTS~dPLrIYlY~eGlv 226 (714)
-.+|+||.+++.|.||.++++.+++.. .....++||+||. |+ ++++-|+=. ....+ +..|-+
T Consensus 172 ~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~------Gr--Ei~v~Vlg~--~~~~v--~~~~Ei 239 (364)
T PRK14570 172 YPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE------AR--EIECSVIGN--EQIKI--FTPGEI 239 (364)
T ss_pred CCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC------CE--EEEEEEECC--CCceE--eeeEEE
Confidence 568999999999999999999888764 1345689999995 54 677766521 11222 222222
Q ss_pred EeccCCCCCCCCCCCCCceeEeeeccccccCCCcccccccCCccChhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHhhh
Q psy13386 227 RFATVKYERPKQGNLTNKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKTVLSAHP 306 (714)
Q Consensus 227 RfAt~~Y~~p~~~Nl~d~~~HLTNysInK~s~nf~~dee~Gsk~sLs~l~~~L~~~G~d~~~lw~~IkdiIikTllAa~p 306 (714)
.+....|. +....| ..+ .|...... . -... .+++.++|+++..++..+.
T Consensus 240 ~~~~~~f~-----dy~~Ky------~~~-----------~~~~~~~~-~-----Pa~l-~~e~~~~i~~~A~~~~~aL-- 288 (364)
T PRK14570 240 VVQDFIFY-----DYDAKY------STI-----------PGNSIVFN-I-----PAHL-DTKHLLDIKEYAFLTYKNL-- 288 (364)
T ss_pred EeCCCCcc-----CHHHhc------CCC-----------CCCceEEE-C-----CCCC-CHHHHHHHHHHHHHHHHHh--
Confidence 22111110 000000 000 00000000 0 0001 2344555666655544332
Q ss_pred hHHHhhcccCCCCCCCCCeEEEEEEEEEecC-CCCeEEEEeecCCCCCCCChh
Q psy13386 307 NIKTMYNSVFPRHNYMTACFQLLGFDILLDD-TLNPYVLEVNHSPSFYTDTEI 358 (714)
Q Consensus 307 ~L~~~y~~~~~~~~~~~~cFELlGfDfLLD~-~lKPWLLEVN~sPSl~tds~l 358 (714)
+|..+.++||++|. +++|||+|||+.|+|+..+.+
T Consensus 289 -----------------g~~G~~RvDf~l~~~~g~~yvlEiNt~PG~t~~S~~ 324 (364)
T PRK14570 289 -----------------ELRGMARIDFLIEKDTGLIYLNEINTIPGFTDISMF 324 (364)
T ss_pred -----------------CCcceEEEEEEEECCCCcEEEEEeeCCCCCCcccHH
Confidence 57788999999996 599999999999999887654
No 25
>PRK05246 glutathione synthetase; Provisional
Probab=98.40 E-value=2.7e-06 Score=91.34 Aligned_cols=73 Identities=23% Similarity=0.437 Sum_probs=52.5
Q ss_pred cccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccch-h---h----hhccCCceEEeecccCcccCCCce
Q psy13386 130 FFPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLR-H---L----SQEQNRNYICQEYIANPFLIDGLK 201 (714)
Q Consensus 130 f~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~-e---I----~~~~~~~~IVQkYI~nPlLIdGrK 201 (714)
++|+|.+.. +.+++.++++..+ ..|+||..|++|+||+.++..+ + + .......+++|+||+.+- +
T Consensus 134 ~vP~T~~~~-~~~~~~~~~~~~~-~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~--~--- 206 (316)
T PRK05246 134 LMPPTLVTR-DKAEIRAFRAEHG-DIILKPLDGMGGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIK--E--- 206 (316)
T ss_pred cCCCEEEeC-CHHHHHHHHHHCC-CEEEEECCCCCccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCC--C---
Confidence 699998764 4566767776664 6799999999999999986432 1 1 112356899999997322 2
Q ss_pred EEEEEEEE
Q psy13386 202 FDMRVYTL 209 (714)
Q Consensus 202 FDLRvYVL 209 (714)
-|+|++|+
T Consensus 207 ~D~Rv~vv 214 (316)
T PRK05246 207 GDKRILLV 214 (316)
T ss_pred CCEEEEEE
Confidence 39999885
No 26
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.35 E-value=9.4e-06 Score=93.72 Aligned_cols=69 Identities=29% Similarity=0.541 Sum_probs=51.3
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEE-Eccchhhhh------ccCCceEEeecccCcccCCCceEE
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISL-IRNLRHLSQ------EQNRNYICQEYIANPFLIDGLKFD 203 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l-~~~l~eI~~------~~~~~~IVQkYI~nPlLIdGrKFD 203 (714)
+|+++.+. +.+++..+.+... ..|+||..|++|+||.+ +++.+++.. .....++||+||. | .|
T Consensus 312 VP~~~~~~-~~~~~~~~~~~~G-~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~~~~~~vlvEe~i~------G--~d 381 (547)
T TIGR03103 312 VPEQQLAG-NGEAVEAFLAEHG-AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQFCDRVLLERYVP------G--ED 381 (547)
T ss_pred CCCEEEEC-CHHHHHHHHHHhC-CEEEEECCCCCCcCeEEecCCHHHHHHHHHHHHhcCCcEEEEEecc------C--Ce
Confidence 78888765 3555666665443 47999999999999998 788877653 1345799999995 3 49
Q ss_pred EEEEEE
Q psy13386 204 MRVYTL 209 (714)
Q Consensus 204 LRvYVL 209 (714)
+|++|+
T Consensus 382 ~Rv~Vi 387 (547)
T TIGR03103 382 LRLVVI 387 (547)
T ss_pred EEEEEE
Confidence 999775
No 27
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.29 E-value=1.5e-05 Score=84.97 Aligned_cols=217 Identities=21% Similarity=0.317 Sum_probs=111.9
Q ss_pred cccCCCCcchhhHHHHHHHHHHHHHCCCCCCcccceeccC---cchHHHHHHHhcC-CcEEEEeCCCCCCCCcEEEEccc
Q psy13386 99 NHFPLIMELCRKNLLAKNLNQMKIQYPNDYNFFPQTWILP---RDNREVHAFLTSK-KATVIVKPDNGSNGLGISLIRNL 174 (714)
Q Consensus 99 NHFPG~~~LtRKd~LarnL~rm~k~~p~~y~f~P~TfiLP---~d~~~f~~~~k~~-k~~WIvKP~~gsrGrGI~l~~~l 174 (714)
|.---...+..|-.+.+.+..+--..|..+--.+..|... .+.++|.++++.+ ...+++||..|++|+||.++...
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~ 95 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRR 95 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEee
Confidence 4432333455665555544432111122111134444332 3667888888765 36788899999999999998765
Q ss_pred hh---------hhh--ccCC--ceEEeecccC-ccc--C-CCceEEEEEEEEEeeecCCEEEEEeceEEEeccCCCCCCC
Q psy13386 175 RH---------LSQ--EQNR--NYICQEYIAN-PFL--I-DGLKFDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPK 237 (714)
Q Consensus 175 ~e---------I~~--~~~~--~~IVQkYI~n-PlL--I-dGrKFDLRvYVLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~ 237 (714)
+. +.. .... .||+|++|.. |.+ + ..---+||+.+++.. -.+++ -..+.|++...-.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~---~~~~~-~~a~lRlg~~~~~--- 168 (285)
T PF14397_consen 96 DGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD---GEVEV-LMAMLRLGRGGSG--- 168 (285)
T ss_pred cCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC---CeeEE-EEEEEEeCCCCCc---
Confidence 41 111 1122 8999999972 332 1 244568999887654 12221 2356777633211
Q ss_pred CCCCCC--ceeE------eeecc-ccccCCCcccccccCCccChhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHhhhhH
Q psy13386 238 QGNLTN--KYMH------LTNYS-VNKHSISFIHDEEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKTVLSAHPNI 308 (714)
Q Consensus 238 ~~Nl~d--~~~H------LTNys-InK~s~nf~~dee~Gsk~sLs~l~~~L~~~G~d~~~lw~~IkdiIikTllAa~p~L 308 (714)
.+|+.. ..+- +..++ .......|....+.|.. + .|... --|+++.+++.+....
T Consensus 169 ~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~--~---------~g~~I-P~w~~~~~l~~~~~~~----- 231 (285)
T PF14397_consen 169 VDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAP--F---------SGFQI-PNWDEILELAKEAHRK----- 231 (285)
T ss_pred ccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCc--c---------CCccC-CCHHHHHHHHHHHHHH-----
Confidence 123211 1110 11111 00011111111111111 0 12211 2466666555433211
Q ss_pred HHhhcccCCCCCCCCCeEEEEEEEEEecCCCCeEEEEeecC--CCCCC
Q psy13386 309 KTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHS--PSFYT 354 (714)
Q Consensus 309 ~~~y~~~~~~~~~~~~cFELlGfDfLLD~~lKPWLLEVN~s--PSl~t 354 (714)
+ .-+..+|.||.||+++ |.|||.|+. |.+..
T Consensus 232 -------~-------p~~~~iGWDvait~~G-p~llE~N~~~~pgl~~ 264 (285)
T PF14397_consen 232 -------F-------PGLGYIGWDVAITEDG-PVLLEGNARWDPGLMI 264 (285)
T ss_pred -------C-------CCCCeEEEEEEEcCCC-cEEEEeeCCCCCCcHh
Confidence 1 1245689999999999 999999999 88873
No 28
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=98.23 E-value=4.9e-06 Score=81.06 Aligned_cols=40 Identities=30% Similarity=0.538 Sum_probs=17.3
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhhhccCCceEEeeccc
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLSQEQNRNYICQEYIA 192 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~~~~~~~~IVQkYI~ 192 (714)
..||+||..|+.|.||+++++.+++........++|+||+
T Consensus 32 ~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~~~i~Qe~i~ 71 (161)
T PF02655_consen 32 GPWVIKPRDGAGGEGIRIVDSEDELEEFLNKLRIVQEFIE 71 (161)
T ss_dssp SSEEEEESS-------B--SS--TTE-------EEEE---
T ss_pred CcEEEEeCCCCCCCCeEEECCchhhccccccceEEeeeeC
Confidence 6799999999999999999999877643333349999996
No 29
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=98.17 E-value=0.00012 Score=79.50 Aligned_cols=61 Identities=28% Similarity=0.452 Sum_probs=44.4
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCC-CCCcEEEEccchhhhhc----cCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGS-NGLGISLIRNLRHLSQE----QNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gs-rGrGI~l~~~l~eI~~~----~~~~~IVQkYI~ 192 (714)
.|+++.+.+ .+++..+...-.-.+|+||..++ .|+|++++++.+++... ....+|||+||+
T Consensus 113 ~p~~~~~~~-~~~~~~~~~~~g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~I~ 178 (352)
T TIGR01161 113 VPPFLVIKD-EEELDAALQELGFPVVLKARTGGYDGRGQYRIRNEADLPQAAKELGDRECIVEEFVP 178 (352)
T ss_pred CCCccEeCC-HHHHHHHHHHcCCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhcCCCcEEEEecCC
Confidence 566666643 45555555443456899999875 89999999999887641 334799999996
No 30
>PLN02257 phosphoribosylamine--glycine ligase
Probab=98.16 E-value=6.5e-05 Score=84.58 Aligned_cols=60 Identities=15% Similarity=0.325 Sum_probs=43.1
Q ss_pred cceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeeccc
Q psy13386 132 PQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIA 192 (714)
Q Consensus 132 P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~ 192 (714)
|+...+ .+.++...+.+...-..|+||..++.|+|++++++.+++... ....+|||+||.
T Consensus 118 p~~~~~-~~~~e~~~~~~~~g~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~ 189 (434)
T PLN02257 118 AKYETF-TDPAAAKKYIKEQGAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLD 189 (434)
T ss_pred CCeEEe-CCHHHHHHHHHHcCCCEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC
Confidence 443333 345666666655445679999999999999999998886531 135789999996
No 31
>PRK12458 glutathione synthetase; Provisional
Probab=98.15 E-value=4.1e-05 Score=83.49 Aligned_cols=98 Identities=24% Similarity=0.371 Sum_probs=63.6
Q ss_pred ceecccCCCCcchhhHHHHHHHHHHHHHCCCCCCcccceeccCcchHHHHHHHhcCCcE-EEEeCCCCCCCCcEEEEccc
Q psy13386 96 QRTNHFPLIMELCRKNLLAKNLNQMKIQYPNDYNFFPQTWILPRDNREVHAFLTSKKAT-VIVKPDNGSNGLGISLIRNL 174 (714)
Q Consensus 96 QkVNHFPG~~~LtRKd~LarnL~rm~k~~p~~y~f~P~TfiLP~d~~~f~~~~k~~k~~-WIvKP~~gsrGrGI~l~~~l 174 (714)
..+|+......-..|..+. .+++ ..+|.|++.. +.+++.+++...... .|+||..|++|+||+++++.
T Consensus 116 ~viN~p~~i~~~~dK~~~~--------~l~~--~~vP~T~v~~-~~~~~~~~~~~~~~~pvVvKPl~G~gG~gV~~v~~~ 184 (338)
T PRK12458 116 LVVNDPDGLRIANNKLYFQ--------SFPE--EVRPTTHISR-NKEYIREFLEESPGDKMILKPLQGSGGQGVFLIEKS 184 (338)
T ss_pred eEecCHHHHHhccCHHHHH--------hhcc--CCCCCEEEeC-CHHHHHHHHHHcCCCeEEEEECCCCCccCeEEEecC
Confidence 3566644444444554332 1222 3689998764 456676766655433 89999999999999999755
Q ss_pred hh-----hhh--ccCCceEEeecccCcccCCCceEEEEEEEE
Q psy13386 175 RH-----LSQ--EQNRNYICQEYIANPFLIDGLKFDMRVYTL 209 (714)
Q Consensus 175 ~e-----I~~--~~~~~~IVQkYI~nPlLIdGrKFDLRvYVL 209 (714)
+. +.. .....+++|+||..+ . ..|+|++|+
T Consensus 185 ~~~~~~~ile~~~~~~~~ivQeyI~~~---~--~gDiRv~vv 221 (338)
T PRK12458 185 AQSNLNQILEFYSGDGYVIAQEYLPGA---E--EGDVRILLL 221 (338)
T ss_pred ChhhHHHHHHHHhhCCCEEEEEcccCC---C--CCCEEEEEE
Confidence 43 221 134579999999732 2 359999973
No 32
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.09 E-value=2.6e-05 Score=77.74 Aligned_cols=74 Identities=23% Similarity=0.499 Sum_probs=45.9
Q ss_pred CcccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccc----hhhhh----ccCCceEEeecccCcccCCCc
Q psy13386 129 NFFPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNL----RHLSQ----EQNRNYICQEYIANPFLIDGL 200 (714)
Q Consensus 129 ~f~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l----~eI~~----~~~~~~IVQkYI~nPlLIdGr 200 (714)
+++|+|++-. +..++.++++.++. ||+||..|..|+|++.++.- +.+.. .....+++|+||.. .-+|
T Consensus 10 ~~~P~T~vs~-~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~--i~~G- 84 (173)
T PF02955_consen 10 ELIPPTLVSR-DKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPE--IKEG- 84 (173)
T ss_dssp CCS--EEEES--HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GG--GGG--
T ss_pred ccCcCEEEEC-CHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEecccc--ccCC-
Confidence 6889998874 57778888777645 99999999999999999873 22222 23457999999974 2355
Q ss_pred eEEEEEEEE
Q psy13386 201 KFDMRVYTL 209 (714)
Q Consensus 201 KFDLRvYVL 209 (714)
|.|+.++
T Consensus 85 --DkRii~~ 91 (173)
T PF02955_consen 85 --DKRIILF 91 (173)
T ss_dssp --EEEEEEE
T ss_pred --CEEEEEE
Confidence 8898764
No 33
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=98.04 E-value=9.3e-05 Score=79.66 Aligned_cols=73 Identities=23% Similarity=0.406 Sum_probs=51.9
Q ss_pred cccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccch----hhhh----ccCCceEEeecccCcccCCCce
Q psy13386 130 FFPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLR----HLSQ----EQNRNYICQEYIANPFLIDGLK 201 (714)
Q Consensus 130 f~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~----eI~~----~~~~~~IVQkYI~nPlLIdGrK 201 (714)
.+|+|.+.. +..++.+++...+ ..|+||..|++|+|++.++..+ .+.. .....+++|+||... .+
T Consensus 133 ~vP~T~v~~-~~~~~~~~~~~~g-~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~---~~-- 205 (312)
T TIGR01380 133 VIPPTLVTR-DKAEIRAFLAEHG-DIVLKPLDGMGGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEI---KE-- 205 (312)
T ss_pred CCCCEEEeC-CHHHHHHHHHHcC-CEEEEECCCCCCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccc---cC--
Confidence 689998653 5666677766554 5899999999999999886532 1111 124689999999732 22
Q ss_pred EEEEEEEE
Q psy13386 202 FDMRVYTL 209 (714)
Q Consensus 202 FDLRvYVL 209 (714)
-|+|++|+
T Consensus 206 ~D~Rv~vv 213 (312)
T TIGR01380 206 GDKRILLI 213 (312)
T ss_pred CCEEEEEE
Confidence 49999885
No 34
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=98.02 E-value=0.00017 Score=76.82 Aligned_cols=71 Identities=23% Similarity=0.383 Sum_probs=50.7
Q ss_pred ccceeccCcchHHHHH--HHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc--cCCceEEeecccCcccCCCceEEEEE
Q psy13386 131 FPQTWILPRDNREVHA--FLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE--QNRNYICQEYIANPFLIDGLKFDMRV 206 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~--~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~--~~~~~IVQkYI~nPlLIdGrKFDLRv 206 (714)
.|+|+.+.+ .+++.. +.....-.||+||..|+.|+|++++++.+++... ....++||+|| +|.-+.+.+
T Consensus 126 ~p~~~~~~~-~~~~~~~~~~~~~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~~~~~lvqeyi------~G~e~~v~~ 198 (326)
T PRK12767 126 TPKSYLPES-LEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEYVPNLIIQEFI------EGQEYTVDV 198 (326)
T ss_pred CCCEEcccC-HHHHHhhhhcccCCCCEEEEeCCCCCccCeEEeCCHHHHHHHHHhCCCeEEEecc------CCceEEEEE
Confidence 688887643 444544 2222335689999999999999999999887642 34589999999 366666665
Q ss_pred EE
Q psy13386 207 YT 208 (714)
Q Consensus 207 YV 208 (714)
|+
T Consensus 199 ~~ 200 (326)
T PRK12767 199 LC 200 (326)
T ss_pred EE
Confidence 54
No 35
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=98.00 E-value=0.00018 Score=78.47 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=45.0
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc----------cCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE----------QNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~----------~~~~~IVQkYI~ 192 (714)
.|+++.+.. .+++..+...-.-.+|+||..|+.|+|++++++.+++... ....+|||+||+
T Consensus 116 ~p~~~~~~~-~~~~~~~~~~~g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~ 186 (380)
T TIGR01142 116 TSRYMFADS-LDELREAVEKIGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFID 186 (380)
T ss_pred CCCceEeCC-HHHHHHHHHHcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecC
Confidence 566666643 4555555544345689999999999999999999887631 135799999995
No 36
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=97.97 E-value=0.00042 Score=77.91 Aligned_cols=54 Identities=13% Similarity=0.347 Sum_probs=41.3
Q ss_pred cchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeeccc
Q psy13386 139 RDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIA 192 (714)
Q Consensus 139 ~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~ 192 (714)
.+.++..++.+...-.+|+||..++.|+|++++.+.+++... ....+|||+||+
T Consensus 130 ~~~~ea~~~~~~~~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~ 195 (426)
T PRK13789 130 TEYSSSLSYLESEMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFME 195 (426)
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcC
Confidence 356667777765555789999999999999999998876531 123689999995
No 37
>PRK14016 cyanophycin synthetase; Provisional
Probab=97.96 E-value=7.4e-05 Score=89.11 Aligned_cols=70 Identities=21% Similarity=0.450 Sum_probs=51.1
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEE-Eccchhhhh------ccCCceEEeecccCcccCCCceEE
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISL-IRNLRHLSQ------EQNRNYICQEYIANPFLIDGLKFD 203 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l-~~~l~eI~~------~~~~~~IVQkYI~nPlLIdGrKFD 203 (714)
+|+++... +.+++.++.+.-.-..|+||..|++|+|+.+ +++.+++.. .....++||+||. | .|
T Consensus 229 vP~~~~v~-s~~~a~~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe~I~------G--~d 299 (727)
T PRK14016 229 VPEGRVVT-SAEDAWEAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASKESSDVIVERYIP------G--KD 299 (727)
T ss_pred CCCeeEeC-CHHHHHHHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHHhCCeEEEEEecC------C--ce
Confidence 67776553 3555555555444567999999999999998 888887653 1346899999995 3 48
Q ss_pred EEEEEE
Q psy13386 204 MRVYTL 209 (714)
Q Consensus 204 LRvYVL 209 (714)
+|++|+
T Consensus 300 ~Rv~Vv 305 (727)
T PRK14016 300 HRLLVV 305 (727)
T ss_pred EEEEEE
Confidence 998774
No 38
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=97.87 E-value=0.00057 Score=77.77 Aligned_cols=62 Identities=26% Similarity=0.403 Sum_probs=44.6
Q ss_pred cceeccC-cchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhh------------ccCCceEEeecccC
Q psy13386 132 PQTWILP-RDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQ------------EQNRNYICQEYIAN 193 (714)
Q Consensus 132 P~TfiLP-~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~------------~~~~~~IVQkYI~n 193 (714)
|-++.+. .+..++..+.+.-.-.+|+||..|+.|+||+++++.+++.. .....++|++||..
T Consensus 131 p~~~~~~~~~~~~~~~~~~~igyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~ 205 (478)
T PRK08463 131 PGTEKLNSESMEEIKIFARKIGYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVN 205 (478)
T ss_pred CCccccCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC
Confidence 4344443 35566666655444568999999999999999999988753 12457899999963
No 39
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=97.83 E-value=0.00049 Score=75.66 Aligned_cols=61 Identities=18% Similarity=0.296 Sum_probs=44.9
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCC-CCCCcEEEEccchhhhhc----cCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNG-SNGLGISLIRNLRHLSQE----QNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~g-srGrGI~l~~~l~eI~~~----~~~~~IVQkYI~ 192 (714)
.|+++.+. +.+++.++...-.-.+|+||..+ +.|+|++++++.+++... ....+|||+||.
T Consensus 115 ~p~~~~v~-s~~~l~~~~~~~g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~I~ 180 (372)
T PRK06019 115 VAPFAVVD-SAEDLEAALADLGLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALLGSVPCILEEFVP 180 (372)
T ss_pred CCCceEeC-CHHHHHHHHHHcCCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhcCCCCEEEEecCC
Confidence 45656554 35666665555456799999975 689999999999988642 345899999996
No 40
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=97.83 E-value=0.001 Score=74.86 Aligned_cols=57 Identities=26% Similarity=0.397 Sum_probs=42.4
Q ss_pred cCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccC
Q psy13386 137 LPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIAN 193 (714)
Q Consensus 137 LP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~n 193 (714)
+..+.++...+.+.-.-.+|+||..++.|+|++++++.+++... ....++||+||+.
T Consensus 137 ~~~~~~e~~~~~~~ig~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g 205 (449)
T TIGR00514 137 LVEDEEENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIEN 205 (449)
T ss_pred CcCCHHHHHHHHHHhCCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 44556666555544345689999999999999999999887631 2356999999973
No 41
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=97.83 E-value=0.00054 Score=85.30 Aligned_cols=72 Identities=25% Similarity=0.324 Sum_probs=50.8
Q ss_pred cceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccCcccCCC
Q psy13386 132 PQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIANPFLIDG 199 (714)
Q Consensus 132 P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~nPlLIdG 199 (714)
|-+.....+.++...+.+.-.-.+|+||..|+.|+|++++++.+++... ....+++|+||+.|
T Consensus 132 p~t~~~v~~~eea~~~ae~iGyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~----- 206 (1143)
T TIGR01235 132 PGTDGPPETMEEVLDFAAAIGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERP----- 206 (1143)
T ss_pred CCcccCcCCHHHHHHHHHHcCCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCC-----
Confidence 3343344556666666655456689999999999999999999887531 24579999999754
Q ss_pred ceEEEEEEEEE
Q psy13386 200 LKFDMRVYTLI 210 (714)
Q Consensus 200 rKFDLRvYVLV 210 (714)
.++.+-++.
T Consensus 207 --reIeVqVlg 215 (1143)
T TIGR01235 207 --RHIEVQLLG 215 (1143)
T ss_pred --eEEEEEEEE
Confidence 256665553
No 42
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=97.82 E-value=0.00067 Score=81.83 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=31.4
Q ss_pred CeEEEEEEEEEecCCCCeEEEEeecCCCCCCCChh
Q psy13386 324 ACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEI 358 (714)
Q Consensus 324 ~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds~l 358 (714)
+|..+.++||++|.++++|++|||..|+|+..|.+
T Consensus 730 g~~G~~riDf~v~~~g~~yv~EiNt~PG~t~~s~~ 764 (809)
T PRK14573 730 QGKGSCRIDFFLDEEGNFWLSEMNPIPGMTEASPF 764 (809)
T ss_pred CCceEEEEEEEEcCCCCEEEEEeeCCCCCCcccHH
Confidence 48888999999999999999999999999877643
No 43
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.82 E-value=0.00023 Score=77.29 Aligned_cols=142 Identities=20% Similarity=0.310 Sum_probs=86.1
Q ss_pred HHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhh------ccCCceEEeecccCcccCCCceEEEEEEEE--------Ee
Q psy13386 146 AFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQ------EQNRNYICQEYIANPFLIDGLKFDMRVYTL--------IT 211 (714)
Q Consensus 146 ~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~------~~~~~~IVQkYI~nPlLIdGrKFDLRvYVL--------VT 211 (714)
.+.....-..+|||......-|+..++...++.. ..++..++++|+. |+++.+.+.-- +.
T Consensus 136 ~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~d~~vl~e~~~~------~rei~v~vl~~~~~~~~l~~~ 209 (317)
T COG1181 136 EVEEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKYDRDVLREQGIT------GREIEVGVLGNDYEEQALPLG 209 (317)
T ss_pred HhhcccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHHHhCCceeeccCCC------cceEEEEecCCcccceecCce
Confidence 3433344567889999999999999988877663 3577889999985 66666554221 01
Q ss_pred eecC--CEEEEEeceEEEeccCCCCCCCCCCCCCceeEeeeccccccCCCcccccccCCccChhHHHHHHHHcCCChhHH
Q psy13386 212 SFDP--MRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQWFCRMGYDTDLV 289 (714)
Q Consensus 212 S~dP--LrIYlY~eGlvRfAt~~Y~~p~~~Nl~d~~~HLTNysInK~s~nf~~dee~Gsk~sLs~l~~~L~~~G~d~~~l 289 (714)
++-| -++|.|+ .+|++. .|.....- .+ -++.+
T Consensus 210 eI~~~~~~fydye---------------~Ky~~~----------------------gg~~~~~p--------a~-lt~~~ 243 (317)
T COG1181 210 EIPPKGEEFYDYE---------------AKYLST----------------------GGAQYDIP--------AG-LTDEI 243 (317)
T ss_pred EEecCCCeEEeee---------------ccccCC----------------------CCceeeCC--------CC-CCHHH
Confidence 1111 1333332 112110 00000000 00 03455
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhcccCCCCCCCCCeEEEEEEEEEecC-CCCeEEEEeecCCCCCCCChh
Q psy13386 290 WSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILLDD-TLNPYVLEVNHSPSFYTDTEI 358 (714)
Q Consensus 290 w~~IkdiIikTllAa~p~L~~~y~~~~~~~~~~~~cFELlGfDfLLD~-~lKPWLLEVN~sPSl~tds~l 358 (714)
.++|+++..++..+. +|-.+-|+||++|+ .+++||+|||++|+|...+-+
T Consensus 244 ~~~i~~lA~~a~~al-------------------g~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~ 294 (317)
T COG1181 244 HEEIKELALRAYKAL-------------------GCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLF 294 (317)
T ss_pred HHHHHHHHHHHHHhc-------------------CCCceEEEEEEEECCCCCEEEEEEeCCCCCcccccc
Confidence 566666655544332 57778899999999 899999999999998876644
No 44
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=97.81 E-value=0.00078 Score=75.49 Aligned_cols=56 Identities=23% Similarity=0.364 Sum_probs=41.8
Q ss_pred cCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeeccc
Q psy13386 137 LPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIA 192 (714)
Q Consensus 137 LP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~ 192 (714)
.-.+.+++.++...-.-.+|+||..|+.|+|++++++.+++... ....++||+||+
T Consensus 137 ~v~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~ 204 (451)
T PRK08591 137 PVDDEEEALAIAKEIGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLE 204 (451)
T ss_pred ccCCHHHHHHHHHHcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 33456666666554445689999999999999999999887631 135689999996
No 45
>PRK06849 hypothetical protein; Provisional
Probab=97.79 E-value=0.00062 Score=74.91 Aligned_cols=61 Identities=16% Similarity=0.367 Sum_probs=44.0
Q ss_pred ccceeccCcchHHHHHHHhcC-CcEEEEeCCCCCCCCcEEEEccchhhhhc---cCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSK-KATVIVKPDNGSNGLGISLIRNLRHLSQE---QNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~-k~~WIvKP~~gsrGrGI~l~~~l~eI~~~---~~~~~IVQkYI~ 192 (714)
+|+|+.+-. .+++.++.... ...+|+||..++.|+|+.++.+.+.+... ....+|+|+||.
T Consensus 131 vP~t~~v~~-~~~l~~~~~~~~~~P~vlKP~~~~~~~~v~~~~~~~~l~~~~~~~~~~~ivQe~I~ 195 (389)
T PRK06849 131 VPKTYLITD-PEAIRNFMFKTPHTPYVLKPIYSRFVRRVDLLPKEAALKELPISKDNPWVMQEFIQ 195 (389)
T ss_pred CCCEEEeCC-HHHHHHHhhcCCCCcEEEEeCcccCCCeEEEecCHHHhcccccCCCCCeEEEEEec
Confidence 699998743 45555544432 35789999999999999998886555432 234699999996
No 46
>PRK05586 biotin carboxylase; Validated
Probab=97.78 E-value=0.00059 Score=76.72 Aligned_cols=54 Identities=20% Similarity=0.376 Sum_probs=40.5
Q ss_pred cchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeeccc
Q psy13386 139 RDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIA 192 (714)
Q Consensus 139 ~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~ 192 (714)
.+.+++....+.-.-..|+||..|+.|+|++++++.+++... ....+++|+||.
T Consensus 139 ~~~~e~~~~~~~igyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~ 204 (447)
T PRK05586 139 ENEEEALEIAKEIGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIE 204 (447)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 345556555544445689999999999999999999887531 135789999996
No 47
>PRK08462 biotin carboxylase; Validated
Probab=97.78 E-value=0.00086 Score=75.18 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=43.1
Q ss_pred ccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccC
Q psy13386 136 ILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIAN 193 (714)
Q Consensus 136 iLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~n 193 (714)
..-.+.++...+.+.-.-.+|+||..|+.|+|++++++.+++... ....+++|+||+.
T Consensus 138 ~~~~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g 207 (445)
T PRK08462 138 GALKSYEEAKKIAKEIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINN 207 (445)
T ss_pred cccCCHHHHHHHHHHcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCC
Confidence 333456666665555456799999999999999999999887631 2346899999973
No 48
>PRK07206 hypothetical protein; Provisional
Probab=97.76 E-value=0.00049 Score=76.02 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=49.6
Q ss_pred ccceeccCcchHHHHHHHhcCCc---EEEEeCCCCCCCCcEEEEccchhhhhc-------------cCCceEEeecccCc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKA---TVIVKPDNGSNGLGISLIRNLRHLSQE-------------QNRNYICQEYIANP 194 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~---~WIvKP~~gsrGrGI~l~~~l~eI~~~-------------~~~~~IVQkYI~nP 194 (714)
.|+++.+. +.+++..+.+...- .+|+||..|+.|+|++++++.+++... ....++||+||+
T Consensus 123 ~p~~~~~~-~~~e~~~~~~~~g~~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~-- 199 (416)
T PRK07206 123 AARQINTA-DWEEAEAWLRENGLIDRPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI-- 199 (416)
T ss_pred cccEEecC-CHHHHHHHHHhcCCCCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc--
Confidence 57777764 35566666654332 789999999999999999999887531 135799999995
Q ss_pred ccCCCceEEEEE
Q psy13386 195 FLIDGLKFDMRV 206 (714)
Q Consensus 195 lLIdGrKFDLRv 206 (714)
|.-|.+-+
T Consensus 200 ----G~E~sv~~ 207 (416)
T PRK07206 200 ----GTEYVVNF 207 (416)
T ss_pred ----cEEEEEEE
Confidence 55555443
No 49
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=97.73 E-value=0.00082 Score=75.13 Aligned_cols=54 Identities=24% Similarity=0.437 Sum_probs=41.1
Q ss_pred cchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeeccc
Q psy13386 139 RDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIA 192 (714)
Q Consensus 139 ~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~ 192 (714)
.+..+...+...-.-.+|+||..++.|+|+.++++.+++... ....++||+||.
T Consensus 139 ~~~~e~~~~~~~~~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~ 204 (450)
T PRK06111 139 EDAEEAIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIE 204 (450)
T ss_pred CCHHHHHHHHHHhCCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccC
Confidence 456666665554445689999999999999999999887531 234789999996
No 50
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=97.70 E-value=0.0022 Score=71.47 Aligned_cols=61 Identities=21% Similarity=0.333 Sum_probs=44.6
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~ 192 (714)
.|+++.+ .+.+++..+.+...-.+|+||..++.|+|++++.+.+++... ....++||+||.
T Consensus 117 ~p~~~~~-~~~~~~~~~~~~~~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~ 189 (420)
T PRK00885 117 TAAYETF-TDAEEALAYLDEKGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD 189 (420)
T ss_pred CCCeEEe-CCHHHHHHHHHHcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC
Confidence 5666655 345556666554445689999999999999999998887531 135799999995
No 51
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=97.69 E-value=0.0016 Score=73.96 Aligned_cols=55 Identities=24% Similarity=0.255 Sum_probs=41.1
Q ss_pred cchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccC
Q psy13386 139 RDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIAN 193 (714)
Q Consensus 139 ~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~n 193 (714)
.+.++...+.+.-.-.+|+||..|+.|+|++++++.+++... ....+++++||..
T Consensus 138 ~~~~e~~~~~~~igyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~ 204 (472)
T PRK07178 138 ADLDEALAEAERIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVN 204 (472)
T ss_pred CCHHHHHHHHHHcCCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 455666665555455689999999999999999999887631 2346888999863
No 52
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=97.67 E-value=0.00045 Score=84.06 Aligned_cols=70 Identities=20% Similarity=0.428 Sum_probs=50.2
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEE-Eccchhhhh------ccCCceEEeecccCcccCCCceEE
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISL-IRNLRHLSQ------EQNRNYICQEYIANPFLIDGLKFD 203 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l-~~~l~eI~~------~~~~~~IVQkYI~nPlLIdGrKFD 203 (714)
+|+++.+.. .++...+...-....++||..+++|+|+.+ +.+.+++.. .....++||+||. | .|
T Consensus 228 vP~~~~~~s-~~ea~~~~~~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~~~~~vlVEefI~------G--~e 298 (864)
T TIGR02068 228 VPEGTVVQS-AEDAWEAAQDLGYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVEESSGVIVERFIT------G--RD 298 (864)
T ss_pred CCCEEEECC-HHHHHHHHHHcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHHhhCCcEEEEEecc------C--CE
Confidence 677776643 444444444434567999999999999998 888887753 1346799999994 5 48
Q ss_pred EEEEEE
Q psy13386 204 MRVYTL 209 (714)
Q Consensus 204 LRvYVL 209 (714)
+|++|+
T Consensus 299 ~rvlVv 304 (864)
T TIGR02068 299 HRLLVV 304 (864)
T ss_pred EEEEEE
Confidence 888774
No 53
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=97.66 E-value=0.0029 Score=70.31 Aligned_cols=61 Identities=16% Similarity=0.332 Sum_probs=44.1
Q ss_pred ccceeccCcchHHHHHHHhcCCcE-EEEeCCCCCCCCcEEEEccchhhhhc-----------cCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKAT-VIVKPDNGSNGLGISLIRNLRHLSQE-----------QNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~-WIvKP~~gsrGrGI~l~~~l~eI~~~-----------~~~~~IVQkYI~ 192 (714)
.|+++.+ .+.++...+.+...-. +|+||..++.|+|++++++.+++... ....++||+||+
T Consensus 119 ~p~~~~~-~~~~~~~~~~~~~g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~ 191 (423)
T TIGR00877 119 TAEYEVF-TDPEEALSYIQEKGAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLD 191 (423)
T ss_pred CCCeEEE-CCHHHHHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECcc
Confidence 4555444 4456666666554445 89999999999999999998886531 134799999995
No 54
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=97.65 E-value=0.0014 Score=71.82 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=44.5
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc----------cCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE----------QNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~----------~~~~~IVQkYI~ 192 (714)
.|+++.+. +.+++..+...-.-.+|+||..++.|+|++++++.+++... ....+|||+||+
T Consensus 129 ~p~~~~~~-s~~~l~~~~~~~g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~ 199 (395)
T PRK09288 129 TSPYRFAD-SLEELRAAVEEIGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFID 199 (395)
T ss_pred CCCceEEC-CHHHHHHHHHhcCCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecC
Confidence 45555553 45666665544445689999999999999999999887531 125799999996
No 55
>PRK12999 pyruvate carboxylase; Reviewed
Probab=97.64 E-value=0.0015 Score=81.60 Aligned_cols=62 Identities=21% Similarity=0.344 Sum_probs=46.5
Q ss_pred cceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccC
Q psy13386 132 PQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIAN 193 (714)
Q Consensus 132 P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~n 193 (714)
|.++.+..+.+++.++.+.-.-.+|+||..|+.|+|++++++.+++... ....+++|+||+.
T Consensus 136 P~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g 209 (1146)
T PRK12999 136 PGSEGPIDDIEEALEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVEN 209 (1146)
T ss_pred CCcccCCCCHHHHHHHHHHhCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 4444255667777776665556799999999999999999999887531 2457999999974
No 56
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=97.64 E-value=0.0023 Score=73.47 Aligned_cols=55 Identities=18% Similarity=0.384 Sum_probs=42.1
Q ss_pred cchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccC
Q psy13386 139 RDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIAN 193 (714)
Q Consensus 139 ~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~n 193 (714)
.+.++...+.+.-.-.+|+||..|+.|+||+++++.+++... ....+++|+||..
T Consensus 139 ~~~~e~~~~a~~igyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~ 205 (499)
T PRK08654 139 EDIEEAKEIAEEIGYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEK 205 (499)
T ss_pred CCHHHHHHHHHHhCCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 455666666655455689999999999999999999887531 2357899999974
No 57
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=97.62 E-value=0.0029 Score=69.96 Aligned_cols=70 Identities=11% Similarity=0.322 Sum_probs=49.3
Q ss_pred cceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc--------cCCceEEeecccCcccCCCceEE
Q psy13386 132 PQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE--------QNRNYICQEYIANPFLIDGLKFD 203 (714)
Q Consensus 132 P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~--------~~~~~IVQkYI~nPlLIdGrKFD 203 (714)
|+++.+ .+.++...+.+...-.+|+||..++.|+|++++.+.+++... ....+|||+||+ |.-|.
T Consensus 83 p~~~~~-~~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~------G~E~s 155 (379)
T PRK13790 83 ADYKEV-ERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLE------GEEFS 155 (379)
T ss_pred CCEEEE-CCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEccc------CceEE
Confidence 444444 345566666655445689999999999999999998887531 134789999994 66676
Q ss_pred EEEEE
Q psy13386 204 MRVYT 208 (714)
Q Consensus 204 LRvYV 208 (714)
+.+++
T Consensus 156 v~~~~ 160 (379)
T PRK13790 156 LMTFV 160 (379)
T ss_pred EEEEe
Confidence 65543
No 58
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=97.58 E-value=0.0023 Score=72.64 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=41.5
Q ss_pred cchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccC
Q psy13386 139 RDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIAN 193 (714)
Q Consensus 139 ~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~n 193 (714)
.+.++...+.+.-.-.+|+||..|+.|+|++++++.+++... ....++||+||+.
T Consensus 142 ~~~~e~~~~~~~igyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~ 208 (467)
T PRK12833 142 ASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIAR 208 (467)
T ss_pred CCHHHHHHHHHHhCCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC
Confidence 455655555554445689999999999999999999887631 2456899999973
No 59
>PRK06524 biotin carboxylase-like protein; Validated
Probab=97.54 E-value=0.0035 Score=71.78 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=41.9
Q ss_pred chHHHHHHHhc--CCcEEEEeCCCCCCCCcEEEEccchhhhhc-----cCCceEEeecccCcccCCCceEEEEEE
Q psy13386 140 DNREVHAFLTS--KKATVIVKPDNGSNGLGISLIRNLRHLSQE-----QNRNYICQEYIANPFLIDGLKFDMRVY 207 (714)
Q Consensus 140 d~~~f~~~~k~--~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~-----~~~~~IVQkYI~nPlLIdGrKFDLRvY 207 (714)
+..++....+. -.-..++||..|+.|+|++++++.+++... ....++||+||. |+-+.+=++
T Consensus 167 ~~eel~~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~------GrEitVev~ 235 (493)
T PRK06524 167 SYDELSALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIR------NVEVCIEAC 235 (493)
T ss_pred CHHHHHHHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccC------cEEEEEEEE
Confidence 44444444432 224578999999999999999999987742 224578999873 665554433
No 60
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=97.50 E-value=0.002 Score=79.95 Aligned_cols=72 Identities=17% Similarity=0.288 Sum_probs=53.6
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhh--------ccCCceEEeecccCcccCCCceE
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQ--------EQNRNYICQEYIANPFLIDGLKF 202 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~--------~~~~~~IVQkYI~nPlLIdGrKF 202 (714)
.|+++.+. +.+++..+.+.-.-.+|+||..++.|+|+.++.+.+++.. ....+++||+||+ +|.-|
T Consensus 684 ~P~~~~v~-s~ee~~~~~~~igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~-----~G~E~ 757 (1050)
T TIGR01369 684 QPKWKTAT-SVEEAVEFASEIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLE-----DAVEV 757 (1050)
T ss_pred CCCeEEEC-CHHHHHHHHHhcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCC-----CCeEE
Confidence 67777664 3566666555444568999999999999999999988764 1345699999997 47777
Q ss_pred EEEEEE
Q psy13386 203 DMRVYT 208 (714)
Q Consensus 203 DLRvYV 208 (714)
++.+++
T Consensus 758 ~Vd~l~ 763 (1050)
T TIGR01369 758 DVDAVS 763 (1050)
T ss_pred EEEEEE
Confidence 766543
No 61
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.48 E-value=0.0017 Score=80.78 Aligned_cols=69 Identities=13% Similarity=0.243 Sum_probs=50.2
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhh--------ccCCceEEeecccCcccCCCc-e
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQ--------EQNRNYICQEYIANPFLIDGL-K 201 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~--------~~~~~~IVQkYI~nPlLIdGr-K 201 (714)
.|+++.+.+ .+++..+.+.-.-.+|+||..++.|+|+.++.+.+++.. .....++||+||+ |. -
T Consensus 684 ~P~~~~~~s-~ee~~~~~~~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~------G~~E 756 (1066)
T PRK05294 684 QPPNGTATS-VEEALEVAEEIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLE------GAIE 756 (1066)
T ss_pred CCCeEEECC-HHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCC------CCEE
Confidence 577776643 555555555444568999999999999999999988763 1345799999996 43 5
Q ss_pred EEEEE
Q psy13386 202 FDMRV 206 (714)
Q Consensus 202 FDLRv 206 (714)
+++.+
T Consensus 757 ~sV~~ 761 (1066)
T PRK05294 757 VDVDA 761 (1066)
T ss_pred EEEEE
Confidence 66554
No 62
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=97.45 E-value=0.0036 Score=73.18 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=42.2
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCC-CCCcEEEEccchhhhhc------cCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGS-NGLGISLIRNLRHLSQE------QNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gs-rGrGI~l~~~l~eI~~~------~~~~~IVQkYI~ 192 (714)
.|+++.+. +..++....+.-.-..|+||..++ .|+|++++++.+++... ....++|++||.
T Consensus 136 tp~~~~v~-~~~el~~~~~~ig~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~ 203 (577)
T PLN02948 136 LPEFMEID-DLESAEKAGDLFGYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAP 203 (577)
T ss_pred CCCeEEeC-CHHHHHHHHHhcCCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCC
Confidence 45555543 355555555444456899999766 79999999999887631 235789999984
No 63
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=97.39 E-value=0.0019 Score=77.09 Aligned_cols=70 Identities=20% Similarity=0.415 Sum_probs=46.0
Q ss_pred ccceeccCcchHHHHHHHhcC-CcEEEEeCCCCCCCCcEEEEccc---hhhhh------ccCCceEEeecccCcccCCCc
Q psy13386 131 FPQTWILPRDNREVHAFLTSK-KATVIVKPDNGSNGLGISLIRNL---RHLSQ------EQNRNYICQEYIANPFLIDGL 200 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~-k~~WIvKP~~gsrGrGI~l~~~l---~eI~~------~~~~~~IVQkYI~nPlLIdGr 200 (714)
+|.+..+..... ....+..- ....+|||.++++|+||.++.+. +++.. .....+|||+||. |+
T Consensus 490 VP~g~~~~~~~~-a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~Al~~A~~~~~~VLVEefI~------G~ 562 (737)
T TIGR01435 490 VPFGDEFSSQAL-ALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLP------GT 562 (737)
T ss_pred CCCEEEECCHHH-HHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHHHHHHHhcCCeEEEEeccc------CC
Confidence 676666644322 22222221 23468899999999999998773 44332 2356799999994 54
Q ss_pred eEEEEEEEE
Q psy13386 201 KFDMRVYTL 209 (714)
Q Consensus 201 KFDLRvYVL 209 (714)
|+|+.|+
T Consensus 563 --EyRv~VI 569 (737)
T TIGR01435 563 --EYRFFVL 569 (737)
T ss_pred --EEEEEEE
Confidence 8999876
No 64
>PRK02186 argininosuccinate lyase; Provisional
Probab=97.37 E-value=0.0023 Score=78.13 Aligned_cols=71 Identities=24% Similarity=0.386 Sum_probs=52.2
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc-------cCCceEEeecccCcccCCCceEE
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE-------QNRNYICQEYIANPFLIDGLKFD 203 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~-------~~~~~IVQkYI~nPlLIdGrKFD 203 (714)
.|+++.+.. ..++..+.....-.+|+||..|+.|+|++++++.+++... ....++||+||+ |.-|.
T Consensus 122 ~P~~~~v~~-~~e~~~~~~~~~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~~~~~~~lvEEfI~------G~E~s 194 (887)
T PRK02186 122 VPRTHALAL-RAVALDALDGLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRRAGTRAALVQAYVE------GDEYS 194 (887)
T ss_pred CCCEEEeCC-HHHHHHHHHhCCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCcEEEeeccc------CCcEE
Confidence 588877743 4555555544445689999999999999999999887531 256899999995 66666
Q ss_pred EEEEE
Q psy13386 204 MRVYT 208 (714)
Q Consensus 204 LRvYV 208 (714)
+-+++
T Consensus 195 Ve~i~ 199 (887)
T PRK02186 195 VETLT 199 (887)
T ss_pred EEEEE
Confidence 66554
No 65
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=97.35 E-value=0.0084 Score=67.76 Aligned_cols=74 Identities=7% Similarity=-0.032 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHhhcccCCCCCCCCCeEEEEEEEEEecCCCCeEEEEeecCCCCCCCChhhHHHHHHH
Q psy13386 287 DLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEIDVEIKEQV 366 (714)
Q Consensus 287 ~~lw~~IkdiIikTllAa~p~L~~~y~~~~~~~~~~~~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds~lD~~vK~~L 366 (714)
+.+.++|.+++.+++.+.. .. +.....+|.++||+.+++ ||+||+|..++=.-...+...+...|
T Consensus 245 ~~~~~~i~~i~~~~~~~l~----~~----------~~~~~G~l~~~~~lt~~g-p~ViE~n~R~gdpe~~~il~~l~~d~ 309 (435)
T PRK06395 245 KDAPERAKHILNDIIRAMK----DE----------NNPFKGIMYGQFMDTPNG-VKVIEINARFADPEGINVLYLLKSDF 309 (435)
T ss_pred HHHHHHHHHHHHHHHHHHH----hc----------CCceEEEEEEEEEEeCCC-cEEEEEeCCCCCccHHhhhhhcccCH
Confidence 4566677666666655432 11 123567889999997555 99999998766322222223444555
Q ss_pred HHHHHHhcC
Q psy13386 367 LRDTFILCN 375 (714)
Q Consensus 367 I~DtL~Ll~ 375 (714)
+.-++.++.
T Consensus 310 ~~~~~~~~~ 318 (435)
T PRK06395 310 VETLHQIYS 318 (435)
T ss_pred HHHHHHHhc
Confidence 555554444
No 66
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=97.24 E-value=0.003 Score=75.92 Aligned_cols=70 Identities=24% Similarity=0.447 Sum_probs=47.1
Q ss_pred ccceeccCcchHHHHHHHhcC-CcEEEEeCCCCCCCCcEEEEcc---chhhhh------ccCCceEEeecccCcccCCCc
Q psy13386 131 FPQTWILPRDNREVHAFLTSK-KATVIVKPDNGSNGLGISLIRN---LRHLSQ------EQNRNYICQEYIANPFLIDGL 200 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~-k~~WIvKP~~gsrGrGI~l~~~---l~eI~~------~~~~~~IVQkYI~nPlLIdGr 200 (714)
+|+++.+- +.++...++... +...|+||..|+.|+||.++.+ .+++.. .....++||+||. |+
T Consensus 503 vP~~~~~~-~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~------G~ 575 (752)
T PRK02471 503 VPAGDEFT-SLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEIAFREDSSVLVEEFIV------GT 575 (752)
T ss_pred CCCEEEEc-CHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHHHhcCCcEEEEeccc------CC
Confidence 57776653 344454544432 2457999999999999999765 344332 1345799999994 54
Q ss_pred eEEEEEEEE
Q psy13386 201 KFDMRVYTL 209 (714)
Q Consensus 201 KFDLRvYVL 209 (714)
|+|++|+
T Consensus 576 --E~Rv~Vi 582 (752)
T PRK02471 576 --EYRFFVL 582 (752)
T ss_pred --EEEEEEE
Confidence 8898775
No 67
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=97.24 E-value=0.00071 Score=71.08 Aligned_cols=33 Identities=33% Similarity=0.635 Sum_probs=28.3
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhhhccCCceEEeeccc
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLSQEQNRNYICQEYIA 192 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~~~~~~~~IVQkYI~ 192 (714)
..+|+||..||+|.||.+..+..++ +|+|+||+
T Consensus 139 ~k~ViKp~dgCgge~i~~~~~~pd~-------~i~qEfIe 171 (307)
T COG1821 139 KKYVIKPADGCGGEGILFGRDFPDI-------EIAQEFIE 171 (307)
T ss_pred ceEEecccccCCcceeeccCCCcch-------hhHHHhcC
Confidence 7799999999999999987776665 58899986
No 68
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=97.13 E-value=0.018 Score=65.58 Aligned_cols=57 Identities=30% Similarity=0.403 Sum_probs=46.1
Q ss_pred cchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhh------------ccCCceEEeecccCcc
Q psy13386 139 RDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQ------------EQNRNYICQEYIANPF 195 (714)
Q Consensus 139 ~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~------------~~~~~~IVQkYI~nPl 195 (714)
.+.+++.+..+.-.-..|+||..|+.|+||+++++.+++.+ .....+++++||++|-
T Consensus 139 ~~~ee~~~~a~~iGyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~r 207 (449)
T COG0439 139 ADNEEALAIAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPR 207 (449)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCc
Confidence 45677888777665567999999999999999999998874 1355699999999873
No 69
>PLN02735 carbamoyl-phosphate synthase
Probab=97.09 E-value=0.0095 Score=74.47 Aligned_cols=70 Identities=19% Similarity=0.307 Sum_probs=46.9
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc--------cCCceEEeecccCcccCCCceE
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE--------QNRNYICQEYIANPFLIDGLKF 202 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~--------~~~~~IVQkYI~nPlLIdGrKF 202 (714)
.|+++.+ .+.++.....+.-.-..|+||..+..|+|+.++.+.+++... ....++||+||. +|+-+
T Consensus 717 ~p~~~~v-~s~eea~~~a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~-----~g~Ei 790 (1102)
T PLN02735 717 QPKGGIA-RSEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLS-----DATEI 790 (1102)
T ss_pred CCCeeEe-CCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecC-----CcEEE
Confidence 4444444 334555554444344579999999999999999999887631 234689999996 35555
Q ss_pred EEEE
Q psy13386 203 DMRV 206 (714)
Q Consensus 203 DLRv 206 (714)
++=+
T Consensus 791 ~V~v 794 (1102)
T PLN02735 791 DVDA 794 (1102)
T ss_pred EEEE
Confidence 5433
No 70
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=97.02 E-value=0.016 Score=64.22 Aligned_cols=50 Identities=22% Similarity=0.412 Sum_probs=39.2
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhhhc-----------cCCceEEeecccCcccCCCceEEEEEEE
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLSQE-----------QNRNYICQEYIANPFLIDGLKFDMRVYT 208 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~~~-----------~~~~~IVQkYI~nPlLIdGrKFDLRvYV 208 (714)
...|+||..++.|+|++++++.+++... ....+++|+||. |.-|.+=+|+
T Consensus 150 ~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~------G~e~sv~~f~ 210 (358)
T PRK13278 150 RPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVV------GVPYYFHYFY 210 (358)
T ss_pred CCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCC------CcEEEEEEEE
Confidence 4579999999999999999998887531 157899999995 6666655544
No 71
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=96.98 E-value=0.015 Score=72.69 Aligned_cols=69 Identities=17% Similarity=0.315 Sum_probs=50.0
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhh------ccCCceEEeecccCcccCCCceEEE
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQ------EQNRNYICQEYIANPFLIDGLKFDM 204 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~------~~~~~~IVQkYI~nPlLIdGrKFDL 204 (714)
.|+++.+ ...+++..+.+.-.-.+|+||..+..|+|++++.+.+++.. ....+++||+||+ |.-+++
T Consensus 685 ~P~~~~~-~s~ee~~~~~~~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~s~~~~vlIeefI~------G~E~~V 757 (1068)
T PRK12815 685 HVPGLTA-TDEEEAFAFAKRIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENASQLYPILIDQFID------GKEYEV 757 (1068)
T ss_pred CCCeEEe-CCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhhcCCCCEEEEEeec------CceEEE
Confidence 5676655 34566665555444568999999999999999999888763 1356799999994 555555
Q ss_pred EE
Q psy13386 205 RV 206 (714)
Q Consensus 205 Rv 206 (714)
-+
T Consensus 758 d~ 759 (1068)
T PRK12815 758 DA 759 (1068)
T ss_pred EE
Confidence 44
No 72
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=96.97 E-value=0.01 Score=65.66 Aligned_cols=62 Identities=19% Similarity=0.370 Sum_probs=44.9
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCC--CCcEEEEccchhhhhc-------------cCCceEEeecccCcc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSN--GLGISLIRNLRHLSQE-------------QNRNYICQEYIANPF 195 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsr--GrGI~l~~~l~eI~~~-------------~~~~~IVQkYI~nPl 195 (714)
+|++|.=|.+. ....||||..+++ |+|++++++.+++... ....+++|+||.
T Consensus 141 ~Pk~~~~p~eI----------d~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~--- 207 (366)
T PRK13277 141 YPKLFKDPEEI----------DRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVI--- 207 (366)
T ss_pred CceeecCcccc----------CccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccC---
Confidence 47777644322 1458999999999 9999999999887631 124567999995
Q ss_pred cCCCceEEEEEEE
Q psy13386 196 LIDGLKFDMRVYT 208 (714)
Q Consensus 196 LIdGrKFDLRvYV 208 (714)
|.-|.+=+|+
T Consensus 208 ---G~ey~~d~F~ 217 (366)
T PRK13277 208 ---GAHFNFNYFY 217 (366)
T ss_pred ---CCEEEEEEEE
Confidence 7777766664
No 73
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=96.96 E-value=0.023 Score=61.67 Aligned_cols=97 Identities=15% Similarity=0.293 Sum_probs=54.4
Q ss_pred cchhhHHHHHHHHHHHHHCCCCCCcccceeccCcchHHHHHHHhcCC--cEEEEeCCCCC---CCCcEEEEccchhhhhc
Q psy13386 106 ELCRKNLLAKNLNQMKIQYPNDYNFFPQTWILPRDNREVHAFLTSKK--ATVIVKPDNGS---NGLGISLIRNLRHLSQE 180 (714)
Q Consensus 106 ~LtRKd~LarnL~rm~k~~p~~y~f~P~TfiLP~d~~~f~~~~k~~k--~~WIvKP~~gs---rGrGI~l~~~l~eI~~~ 180 (714)
.|.++..+.+.+..+.......--..|....+.++..+....++..+ -..|+||...+ ....+.|+-+.+.+..
T Consensus 90 ~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~- 168 (307)
T PF05770_consen 90 PLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFNEEGLKD- 168 (307)
T ss_dssp HHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT-
T ss_pred HHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEECHHHHhh-
Confidence 35555556666665444333333357887777755555555555544 55899998533 3455888888887764
Q ss_pred cCCceEEeecccCcccCCCceEEEEEEEE
Q psy13386 181 QNRNYICQEYIANPFLIDGLKFDMRVYTL 209 (714)
Q Consensus 181 ~~~~~IVQkYI~nPlLIdGrKFDLRvYVL 209 (714)
...++|+|+||.. +|.= +.+||+
T Consensus 169 L~~P~VlQeFVNH----ggvL--fKVyVv 191 (307)
T PF05770_consen 169 LKPPCVLQEFVNH----GGVL--FKVYVV 191 (307)
T ss_dssp --SSEEEEE--------TTEE--EEEEEE
T ss_pred cCCCEEEEEeecC----CCEE--EEEEEe
Confidence 3568999999974 4443 457776
No 74
>PLN02735 carbamoyl-phosphate synthase
Probab=96.92 E-value=0.013 Score=73.26 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=43.0
Q ss_pred ccceeccCcchHHHHHHHhcCC-cEEEEeCCCCCCCCcEEEEccchhhhh--------ccCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKK-ATVIVKPDNGSNGLGISLIRNLRHLSQ--------EQNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k-~~WIvKP~~gsrGrGI~l~~~l~eI~~--------~~~~~~IVQkYI~ 192 (714)
.|+++.+.+ .++...+.+.-. -..|+||..++.|+|+.++.+.+++.. .....++|++||.
T Consensus 159 vp~~~~v~s-~eea~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~ 228 (1102)
T PLN02735 159 TPPSGIATT-LDECFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLL 228 (1102)
T ss_pred CCCeeEeCC-HHHHHHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 466666533 444444444332 357999999999999999999988764 1345789999985
No 75
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=96.89 E-value=0.022 Score=71.82 Aligned_cols=60 Identities=17% Similarity=0.289 Sum_probs=43.9
Q ss_pred cceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeeccc
Q psy13386 132 PQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIA 192 (714)
Q Consensus 132 P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~ 192 (714)
|.++.+ .+.++...+.+.-.-.+|+||..++.|+|++++++.+++... ....++||+||.
T Consensus 131 p~~~lv-~s~dea~~~a~~igyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~ 202 (1201)
T TIGR02712 131 PGTGLL-SSLDEALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVE 202 (1201)
T ss_pred Cceeec-CCHHHHHHHHHhcCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC
Confidence 444444 446666666555456789999999999999999999887631 134689999996
No 76
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=96.85 E-value=0.013 Score=59.68 Aligned_cols=54 Identities=17% Similarity=0.369 Sum_probs=40.1
Q ss_pred cchHHHHHHHhcCC-cEEEEeCCCCCCCCcEEEEccchhhhh------------ccCCceEEeeccc
Q psy13386 139 RDNREVHAFLTSKK-ATVIVKPDNGSNGLGISLIRNLRHLSQ------------EQNRNYICQEYIA 192 (714)
Q Consensus 139 ~d~~~f~~~~k~~k-~~WIvKP~~gsrGrGI~l~~~l~eI~~------------~~~~~~IVQkYI~ 192 (714)
.++++..+|++... ..+++|++..+.|+|+.++.+.++... ......|+++|+.
T Consensus 24 ~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE~l~ 90 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIEEFLE 90 (194)
T ss_dssp SSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE---
T ss_pred CCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEeccC
Confidence 46888888887766 445999999999999999998876543 1246789999885
No 77
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=96.75 E-value=0.024 Score=70.77 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=45.0
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc--------cCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE--------QNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~--------~~~~~IVQkYI~ 192 (714)
.|+++.+.. .+++.++.+.-.-..|+||..|..|+|++++++.+++... ....++||+||.
T Consensus 143 vp~~~~v~s-~~e~~~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~ 211 (1066)
T PRK05294 143 VPRSGIAHS-MEEALEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLL 211 (1066)
T ss_pred CCCeeeeCC-HHHHHHHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEccc
Confidence 577777643 4555555544444679999999999999999999887631 135789999995
No 78
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=96.68 E-value=0.06 Score=61.90 Aligned_cols=41 Identities=24% Similarity=0.459 Sum_probs=30.6
Q ss_pred eeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccch
Q psy13386 134 TWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLR 175 (714)
Q Consensus 134 TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~ 175 (714)
.|..-.+.++..++.+.. ...|+||..++.|+|++++.+.+
T Consensus 127 ~~~~~~~~~ea~~~~~~~-~PvVVKP~~~aggkGV~iv~~~~ 167 (486)
T PRK05784 127 RYKVFYDVEEAAKFIEYG-GSVAIKPARQAGGKGVKVIADLQ 167 (486)
T ss_pred cceEeCCHHHHHHHHhhc-CCEEEeeCCCCCCCCEEEECChh
Confidence 344434566677776433 46899999999999999999865
No 79
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=96.58 E-value=0.035 Score=69.25 Aligned_cols=61 Identities=21% Similarity=0.200 Sum_probs=43.3
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc--------cCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE--------QNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~--------~~~~~IVQkYI~ 192 (714)
.|+++.+.. .+++....+.-.-..|+||..+..|+|+.++++.+++... ....++||+||.
T Consensus 142 vp~~~~v~s-~~e~~~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~ 210 (1050)
T TIGR01369 142 VPESEIAHS-VEEALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPINQVLVEKSLA 210 (1050)
T ss_pred CCCeeecCC-HHHHHHHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEccc
Confidence 466665533 4455444443334579999999999999999999887631 125789999996
No 80
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=96.50 E-value=0.12 Score=56.67 Aligned_cols=62 Identities=24% Similarity=0.417 Sum_probs=44.6
Q ss_pred cccceeccCcchHHHHHHHhc---CCcEEEEeCCCCCCCCcEEEEc-cchhhhh---------------------ccCCc
Q psy13386 130 FFPQTWILPRDNREVHAFLTS---KKATVIVKPDNGSNGLGISLIR-NLRHLSQ---------------------EQNRN 184 (714)
Q Consensus 130 f~P~TfiLP~d~~~f~~~~k~---~k~~WIvKP~~gsrGrGI~l~~-~l~eI~~---------------------~~~~~ 184 (714)
-+|.+|+. ...++|.+.... .....++||..|..|+|.++++ +.+.+.. ..-..
T Consensus 121 pvp~~~~v-~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~ 199 (329)
T PF15632_consen 121 PVPPYWRV-RTADELKAAYEELRFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPP 199 (329)
T ss_pred CCCCEEEe-CCHHHHHHHHHhcCCCCceEEEecccCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCC
Confidence 57788876 558888776554 2366899999999999999998 4444331 12457
Q ss_pred eEEeeccc
Q psy13386 185 YICQEYIA 192 (714)
Q Consensus 185 ~IVQkYI~ 192 (714)
+||+.|+.
T Consensus 200 llvMeyL~ 207 (329)
T PF15632_consen 200 LLVMEYLP 207 (329)
T ss_pred cEEecCCC
Confidence 88888885
No 81
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=96.25 E-value=0.058 Score=67.49 Aligned_cols=61 Identities=28% Similarity=0.347 Sum_probs=44.6
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc--------cCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE--------QNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~--------~~~~~IVQkYI~ 192 (714)
.|+++.+.. .+++..+.+.-.-..|+||..+..|+|+.++++.+++... ....++||+||.
T Consensus 143 vp~~~~v~s-~ee~~~~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~ 211 (1068)
T PRK12815 143 VPESEIVTS-VEEALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIA 211 (1068)
T ss_pred CCCceeeCC-HHHHHHHHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccC
Confidence 577777643 5555555544344579999999999999999999887641 135789999995
No 82
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=96.13 E-value=0.02 Score=64.94 Aligned_cols=97 Identities=20% Similarity=0.308 Sum_probs=65.6
Q ss_pred CcccceeccCc-------chHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchh-----hh-hccCCceEEeecccCcc
Q psy13386 129 NFFPQTWILPR-------DNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRH-----LS-QEQNRNYICQEYIANPF 195 (714)
Q Consensus 129 ~f~P~TfiLP~-------d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~e-----I~-~~~~~~~IVQkYI~nPl 195 (714)
.++|-|+.|.. +..++..+...++.-||+||..+..|+||.+=...+. +. +...+.||+|+|+.-+-
T Consensus 308 ~HvP~T~~l~~~~~~~~g~~~dL~~~~~a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~~~~yilQe~v~~~~ 387 (445)
T PF14403_consen 308 RHVPWTRLLTAGRTTYQGEDVDLVEFAIANRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAAREPYILQEYVRPPR 387 (445)
T ss_pred HhCCceEEEcCccccccccchhHHHHHHhchhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHhcCCcEEEEEecCCc
Confidence 57999999977 4566777777778899999999999999999664432 22 23467999999998322
Q ss_pred c-----CCCceEEEEEEEEEeeecCCEEEEEe----ceEEEeccC
Q psy13386 196 L-----IDGLKFDMRVYTLITSFDPMRIYVHK----DGIVRFATV 231 (714)
Q Consensus 196 L-----IdGrKFDLRvYVLVTS~dPLrIYlY~----eGlvRfAt~ 231 (714)
+ -+|. +.+.-|... +..|+|. ..+.|+++.
T Consensus 388 ~~~~~~~dg~-~~~~~~~~~-----~g~fly~~~~~G~~tR~g~~ 426 (445)
T PF14403_consen 388 EPMPAFEDGE-VVFEEYPYD-----SGPFLYGGKFAGCYTRLGTG 426 (445)
T ss_pred cccccccCCc-eeEeeeeee-----ccceeECCEEEEEEEEeccC
Confidence 2 1444 222222222 2357775 566777644
No 83
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=96.08 E-value=0.21 Score=51.41 Aligned_cols=66 Identities=17% Similarity=0.283 Sum_probs=44.0
Q ss_pred CcccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhh------------ccCCceEEeecccCc
Q psy13386 129 NFFPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQ------------EQNRNYICQEYIANP 194 (714)
Q Consensus 129 ~f~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~------------~~~~~~IVQkYI~nP 194 (714)
...|-+-..-.+.++...+.+.-.-..++||..+..|+|+.++.+.+++.. ....++++.+||.++
T Consensus 15 p~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~ 92 (211)
T PF02786_consen 15 PVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGA 92 (211)
T ss_dssp BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSE
T ss_pred CcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhhhhhccccCccccccceEEEeeehhhh
Confidence 344444432345666666655444457999999999999999999998774 136788999999854
No 84
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=95.53 E-value=0.18 Score=60.35 Aligned_cols=153 Identities=21% Similarity=0.268 Sum_probs=101.1
Q ss_pred CCcccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhh------------ccCCceEEeecccCcc
Q psy13386 128 YNFFPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQ------------EQNRNYICQEYIANPF 195 (714)
Q Consensus 128 y~f~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~------------~~~~~~IVQkYI~nPl 195 (714)
..-+|-|=-.+.+.++...+.+...-..|+|-..|..|||++++++.+++.. ...+...|-+||+||-
T Consensus 134 vPvipgt~~~~~~~ee~~~fa~~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pk 213 (1149)
T COG1038 134 VPVIPGTDGPIETIEEALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPK 213 (1149)
T ss_pred CCccCCCCCCcccHHHHHHHHHhcCCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcc
Confidence 4577888777788999999888877667889999999999999999998874 2567888999999885
Q ss_pred cCCCceEEEEEEEEEeeecCCEEEEEeceEEEeccCCCCCCCCCCCCCceeEee--eccccccCCCcccccccCCccChh
Q psy13386 196 LIDGLKFDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLT--NYSVNKHSISFIHDEEVGSKRKIS 273 (714)
Q Consensus 196 LIdGrKFDLRvYVLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~~~Nl~d~~~HLT--NysInK~s~nf~~dee~Gsk~sLs 273 (714)
- |-+-+| . ++ ...-+||- ..|||..++.-+.-.. .-+|
T Consensus 214 H-------IEVQiL--g--------------------------D~-~GnvvHLfERDCSvQRRhQKVVE~AP---a~~L- 253 (1149)
T COG1038 214 H-------IEVQIL--G--------------------------DT-HGNVVHLFERDCSVQRRHQKVVEVAP---APYL- 253 (1149)
T ss_pred e-------eEEEEe--e--------------------------cC-CCCEEEEeecccchhhccceeEEecC---CCCC-
Confidence 3 223232 1 11 12245664 5577776655442110 0011
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHhhhhHHHhhcccCCCCCCCCCeEEEEEEEEEecCCCCeEEEEeecCCCCC
Q psy13386 274 TINQWFCRMGYDTDLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFY 353 (714)
Q Consensus 274 ~l~~~L~~~G~d~~~lw~~IkdiIikTllAa~p~L~~~y~~~~~~~~~~~~cFELlGfDfLLD~~lKPWLLEVN~sPSl~ 353 (714)
...+.++|++..++...++ .|.. .+ .+.||+|++++-|+|||| |-..
T Consensus 254 ------------~~~~R~~ic~~Avkla~~~------~Y~~--------AG-----TvEFLvd~~~~fyFIEvN--PRiQ 300 (1149)
T COG1038 254 ------------SPELRDEICDDAVKLARNI------GYIN--------AG-----TVEFLVDEDGKFYFIEVN--PRIQ 300 (1149)
T ss_pred ------------CHHHHHHHHHHHHHHHHHc------CCcc--------cc-----eEEEEEcCCCcEEEEEec--Ccee
Confidence 2455666766665544332 1211 11 478899999999999997 4454
No 85
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=94.93 E-value=0.39 Score=55.84 Aligned_cols=174 Identities=14% Similarity=0.231 Sum_probs=101.6
Q ss_pred CcccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhh------------ccCCceEEeecccCccc
Q psy13386 129 NFFPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQ------------EQNRNYICQEYIANPFL 196 (714)
Q Consensus 129 ~f~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~------------~~~~~~IVQkYI~nPlL 196 (714)
..+|=+--.-.+..++..+.....-..++|...|..|+|++++.+.+++.. ..+..+++-+|+.+|=-
T Consensus 129 p~VPG~~g~~qd~~~~~~~A~eiGyPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRH 208 (645)
T COG4770 129 PTVPGYHGPIQDAAELVAIAEEIGYPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRH 208 (645)
T ss_pred CccCCCCCcccCHHHHHHHHHhcCCcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCce
Confidence 344444333345566666666555456779999999999999999998763 36788999999998842
Q ss_pred CCCceEEEEEEEEEeeecCCEEEEEeceEEEeccCCCCCCCCCCCCCceeEee--eccccccCCCcccccccCCccChhH
Q psy13386 197 IDGLKFDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLT--NYSVNKHSISFIHDEEVGSKRKIST 274 (714)
Q Consensus 197 IdGrKFDLRvYVLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~~~Nl~d~~~HLT--NysInK~s~nf~~dee~Gsk~sLs~ 274 (714)
|=+-|+-.. .....||- -.|+|..++.-+... -+.
T Consensus 209 -------IEiQV~aD~-----------------------------HGNvv~LgERdCSlQRRhQKVIEEA--PaP----- 245 (645)
T COG4770 209 -------IEIQVFADQ-----------------------------HGNVVHLGERDCSLQRRHQKVIEEA--PAP----- 245 (645)
T ss_pred -------EEEEEEecC-----------------------------CCCEEEeeccccchhhhcchhhhcC--CCC-----
Confidence 223332111 11234543 446666555443211 000
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHhhhhHHHhhcccCCCCCCCCCeEEEEEEEEEecCCCCeEEEEeecCCCCCC
Q psy13386 275 INQWFCRMGYDTDLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYT 354 (714)
Q Consensus 275 l~~~L~~~G~d~~~lw~~IkdiIikTllAa~p~L~~~y~~~~~~~~~~~~cFELlGfDfLLD~~lKPWLLEVN~sPSl~t 354 (714)
+. .+.+-+.|.+..++...++ .|.. -+ .+-|++|.++.-|+||+|+- |+.
T Consensus 246 --------~l-~~~~R~amg~aAv~~a~av------gY~g--------AG-----TVEFivd~~~~f~FlEMNTR--LQV 295 (645)
T COG4770 246 --------FL-TEETREAMGEAAVAAAKAV------GYVG--------AG-----TVEFIVDADGNFYFLEMNTR--LQV 295 (645)
T ss_pred --------CC-CHHHHHHHHHHHHHHHHhc------CCCc--------Cc-----eEEEEEcCCCcEEEEEeecc--eec
Confidence 11 2445555655555444333 2221 12 47789999999999999994 555
Q ss_pred CChhhHHHH-HHHHHHHHHhcC
Q psy13386 355 DTEIDVEIK-EQVLRDTFILCN 375 (714)
Q Consensus 355 ds~lD~~vK-~~LI~DtL~Ll~ 375 (714)
..+....+- -.|+.-.|++..
T Consensus 296 EHPVTE~iTGiDLVewqiRVA~ 317 (645)
T COG4770 296 EHPVTELITGIDLVEWQIRVAS 317 (645)
T ss_pred cccchhhhhhhHHHHHHHHHhc
Confidence 555443322 225555555554
No 86
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=94.11 E-value=2.9 Score=41.90 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=38.2
Q ss_pred chHHHHHHHhcCCcEEEEe-CCCCCCCCcEEEEccchhhhh----ccCCceEEeeccc
Q psy13386 140 DNREVHAFLTSKKATVIVK-PDNGSNGLGISLIRNLRHLSQ----EQNRNYICQEYIA 192 (714)
Q Consensus 140 d~~~f~~~~k~~k~~WIvK-P~~gsrGrGI~l~~~l~eI~~----~~~~~~IVQkYI~ 192 (714)
..+++.....+-.-.+|+| +..|.-|+|-+++++.+++.+ .....+|+.++|.
T Consensus 16 ~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~ 73 (172)
T PF02222_consen 16 SLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVP 73 (172)
T ss_dssp SHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE---
T ss_pred CHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccC
Confidence 3555555554434568999 678999999999999998874 2567899999996
No 87
>KOG0369|consensus
Probab=94.04 E-value=0.39 Score=56.63 Aligned_cols=95 Identities=19% Similarity=0.279 Sum_probs=64.5
Q ss_pred CCCCcchhhHHHHHHHHHHHHHC--C--------------------CCCCcccceeccCcchHHHHHHHhcCCcEEEEeC
Q psy13386 102 PLIMELCRKNLLAKNLNQMKIQY--P--------------------NDYNFFPQTWILPRDNREVHAFLTSKKATVIVKP 159 (714)
Q Consensus 102 PG~~~LtRKd~LarnL~rm~k~~--p--------------------~~y~f~P~TfiLP~d~~~f~~~~k~~k~~WIvKP 159 (714)
||-..|+-...+++.....--.| | .....+|-|=-==..+++-.+|.+...-..|+|-
T Consensus 112 PGYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~KA 191 (1176)
T KOG0369|consen 112 PGYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKA 191 (1176)
T ss_pred CCccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEee
Confidence 88888888887877655421111 0 0123344331111235556667777776789999
Q ss_pred CCCCCCCcEEEEccchhhhh------------ccCCceEEeecccCccc
Q psy13386 160 DNGSNGLGISLIRNLRHLSQ------------EQNRNYICQEYIANPFL 196 (714)
Q Consensus 160 ~~gsrGrGI~l~~~l~eI~~------------~~~~~~IVQkYI~nPlL 196 (714)
..|..|||+.++++.+++.. ...+.++|.++|++|--
T Consensus 192 AyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrH 240 (1176)
T KOG0369|consen 192 AYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRH 240 (1176)
T ss_pred cccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcce
Confidence 99999999999999998763 25778999999998853
No 88
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=92.63 E-value=6 Score=45.01 Aligned_cols=173 Identities=18% Similarity=0.249 Sum_probs=95.3
Q ss_pred chHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccCcccCCCceEEEEEE
Q psy13386 140 DNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIANPFLIDGLKFDMRVY 207 (714)
Q Consensus 140 d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~nPlLIdGrKFDLRvY 207 (714)
+.++..+|++.....|++||+..+.|+|+.++.+.++.... .....|+-+|+ +|--|-|=++
T Consensus 126 ~~e~a~ayi~~~g~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL------~GeE~S~~a~ 199 (428)
T COG0151 126 DPEEAKAYIDEKGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFL------DGEEFSLQAF 199 (428)
T ss_pred CHHHHHHHHHHcCCCEEEecccccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEecc------cceEEEEEEE
Confidence 67778888887776699999999999999999987765431 12346777666 4655544332
Q ss_pred EEEeeecCCEEEEEeceEEEeccCCCCCCCCCCCCCceeEeeeccccccCCCcccc--cccCCccChhHHHHHHHHcCCC
Q psy13386 208 TLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVNKHSISFIHD--EEVGSKRKISTINQWFCRMGYD 285 (714)
Q Consensus 208 VLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~~~Nl~d~~~HLTNysInK~s~nf~~d--ee~Gsk~sLs~l~~~L~~~G~d 285 (714)
+ .+ -.++ -+.+ .|-|-.-|..| .+.|.+=+++.. -+-
T Consensus 200 ~--DG---~~v~-------p~p~----------------------aQDhKra~dgD~GPNTGGMGaysp~-------P~~ 238 (428)
T COG0151 200 V--DG---KTVI-------PMPT----------------------AQDHKRAYDGDTGPNTGGMGAYSPA-------PFI 238 (428)
T ss_pred E--cC---CeEE-------ECcc----------------------ccccccccCCCCCCCCCCCCCCCCC-------CCC
Confidence 2 11 1111 0100 11111112111 123433222211 112
Q ss_pred hhHHHHHHH-HHHHHHHHHhhhhHHHhhcccCCCCCCCCCeEEEEEEEEEecCCCCeEEEEeecCCCCCCCChhhHHHHH
Q psy13386 286 TDLVWSRID-DVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEIDVEIKE 364 (714)
Q Consensus 286 ~~~lw~~Ik-diIikTllAa~p~L~~~y~~~~~~~~~~~~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds~lD~~vK~ 364 (714)
.+.+++++. +||..|+.+.... +.....+|=.-+||+.++ |.+||.|..-.=--...+-..++.
T Consensus 239 t~e~~~~~~~~Iv~ptv~gm~~E--------------G~~f~GvLy~glMlt~~G-PkViEfN~RFGDPEtq~vL~~l~s 303 (428)
T COG0151 239 TDEVVERAVEEIVEPTVEGMAKE--------------GYPFRGVLYAGLMLTADG-PKVIEFNARFGDPETQVVLPLLES 303 (428)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc--------------CCCceEEEEeEEEEcCCC-cEEEEEecccCChhHHHHHHhccc
Confidence 356666665 5665555443221 234567777889999999 999999985432222333444444
Q ss_pred HHHHHHHHhc
Q psy13386 365 QVLRDTFILC 374 (714)
Q Consensus 365 ~LI~DtL~Ll 374 (714)
.|+.-++..+
T Consensus 304 dl~~~~~a~~ 313 (428)
T COG0151 304 DLVELLLAAV 313 (428)
T ss_pred cHHHHHHHHH
Confidence 4444444333
No 89
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=92.25 E-value=0.21 Score=51.19 Aligned_cols=92 Identities=24% Similarity=0.530 Sum_probs=51.1
Q ss_pred cchhhHHHHHHHHHHHHHC-CCCCCcccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc----
Q psy13386 106 ELCRKNLLAKNLNQMKIQY-PNDYNFFPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE---- 180 (714)
Q Consensus 106 ~LtRKd~LarnL~rm~k~~-p~~y~f~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~---- 180 (714)
.++.|--+...|.+.+++. ++.|..++.||. |. .. ..+...+-..++|-...++|-|=..+++..++...
T Consensus 8 nf~dKpWvF~qLi~i~~~lG~e~FPLieQt~y-pn-h~---em~s~~~fPvVvKvG~~h~G~GKvkv~n~~~~qDi~sll 82 (203)
T PF02750_consen 8 NFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYY-PN-HR---EMLSAPRFPVVVKVGHAHAGMGKVKVDNQQDFQDIASLL 82 (203)
T ss_dssp HTTSHHHHHHHHHHHHHHHHTTTS-B---EEE-SS-GG---GGCS-SSSSEEEEESS-STTTTEEEE-SHHHHHHHHHHH
T ss_pred hhcCCcHHHHHHHHHHHHhCCcccccceeeec-CC-hh---hhccCCCCCEEEEEccccCceeEEEEccHHHHHHHHHHH
Confidence 4566766666666666655 556888888885 33 12 22222235679999999999998888887766531
Q ss_pred -cCCceEEeecccCcccCCCceEEEEEEE
Q psy13386 181 -QNRNYICQEYIANPFLIDGLKFDMRVYT 208 (714)
Q Consensus 181 -~~~~~IVQkYI~nPlLIdGrKFDLRvYV 208 (714)
....|+. ++ |+. ..|+|||+--
T Consensus 83 ~~~~~Y~T---~E-PfI--d~kyDirvqk 105 (203)
T PF02750_consen 83 AITKDYAT---TE-PFI--DAKYDIRVQK 105 (203)
T ss_dssp HHHTS-EE---EE-E-----EEEEEEEEE
T ss_pred HhcCceEE---ee-ccc--cceeEEEEEE
Confidence 2223332 12 554 6899999844
No 90
>KOG0238|consensus
Probab=90.98 E-value=1.6 Score=50.43 Aligned_cols=43 Identities=19% Similarity=0.408 Sum_probs=36.2
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhhh------------ccCCceEEeecccCcc
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLSQ------------EQNRNYICQEYIANPF 195 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~~------------~~~~~~IVQkYI~nPl 195 (714)
-..++|+..|..|+|+++..+.+++.. .....+++-+||+||=
T Consensus 149 yPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npR 203 (670)
T KOG0238|consen 149 YPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPR 203 (670)
T ss_pred CcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCc
Confidence 446789999999999999999988763 2567889999999984
No 91
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=89.30 E-value=2 Score=47.43 Aligned_cols=41 Identities=32% Similarity=0.546 Sum_probs=28.0
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhhhccCCceEEeecccCcccCCCceEE
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLSQEQNRNYICQEYIANPFLIDGLKFD 203 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~~~~~~~~IVQkYI~nPlLIdGrKFD 203 (714)
.+.|+||..|+.|- +.++.--+++. ...+|.|+||+ |+.+-
T Consensus 150 kt~IlKPv~GaGG~-~el~~~~Ee~~---~~~~i~Qefi~------G~p~S 190 (389)
T COG2232 150 KTLILKPVSGAGGL-VELVKFDEEDP---PPGFIFQEFIE------GRPVS 190 (389)
T ss_pred eeeEEeeccCCCce-eeecccccccC---CcceehhhhcC------CceeE
Confidence 67999999888875 44433334443 26799999995 66554
No 92
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=86.98 E-value=13 Score=41.11 Aligned_cols=66 Identities=23% Similarity=0.384 Sum_probs=52.2
Q ss_pred eccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhh----------ccCCceEEeecccCcccCCCceEEE
Q psy13386 135 WILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQ----------EQNRNYICQEYIANPFLIDGLKFDM 204 (714)
Q Consensus 135 fiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~----------~~~~~~IVQkYI~nPlLIdGrKFDL 204 (714)
|.+-..+++|.+....-.-..++||.++|.|+|-.++++.+++.+ ......||-.+|. ||+
T Consensus 132 Y~fa~s~~e~~~a~~~iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~---------fd~ 202 (394)
T COG0027 132 YRFADSLEELRAAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVK---------FDF 202 (394)
T ss_pred ccccccHHHHHHHHHHcCCCeecccccccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEec---------ceE
Confidence 445556778887776555667999999999999999999999985 2456788888886 888
Q ss_pred EEEEE
Q psy13386 205 RVYTL 209 (714)
Q Consensus 205 RvYVL 209 (714)
-+-+|
T Consensus 203 EiTlL 207 (394)
T COG0027 203 EITLL 207 (394)
T ss_pred EEEEE
Confidence 88665
No 93
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=86.10 E-value=2.1 Score=48.75 Aligned_cols=127 Identities=26% Similarity=0.339 Sum_probs=83.9
Q ss_pred eecccCCCCcchhhHHHHHHHHHHHHHCCCCCCcc--cceecc--CcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEc
Q psy13386 97 RTNHFPLIMELCRKNLLAKNLNQMKIQYPNDYNFF--PQTWIL--PRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIR 172 (714)
Q Consensus 97 kVNHFPG~~~LtRKd~LarnL~rm~k~~p~~y~f~--P~TfiL--P~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~ 172 (714)
.+|- ||+..+-.|..++- |=.|.+.+..+-..+ +.||.. |++.....+.+ .-.++||..++.|-|.-+=.
T Consensus 312 iaNA-~GtGV~ddka~~~y-~P~~~~~ylge~~lL~nv~T~~c~~~~el~~VL~~l----~~lViK~~~~~gg~~~lvGp 385 (488)
T COG2308 312 IANA-LGTGVADDKALYAY-VPQMIEYYLGEEPLLPNVPTYWCGEPDELEHVLANL----SELVIKPVEGSGGYGMLVGP 385 (488)
T ss_pred EecC-CCcCcccchhHHHH-HHHHHHHHcccccccCCCCeeecCCHHHHHHHHhch----hhheEeeeccCCCCcceecc
Confidence 4454 99999999987775 334444443332222 346665 34444444333 44688999999888887754
Q ss_pred cchh--hh------hccCCceEEeeccc---CcccCCC----ceEEEEEEEEEeeecCCEEEEEeceEEEeccCC
Q psy13386 173 NLRH--LS------QEQNRNYICQEYIA---NPFLIDG----LKFDMRVYTLITSFDPMRIYVHKDGIVRFATVK 232 (714)
Q Consensus 173 ~l~e--I~------~~~~~~~IVQkYI~---nPlLIdG----rKFDLRvYVLVTS~dPLrIYlY~eGlvRfAt~~ 232 (714)
.+.+ +. +...+.||.|.-++ -|..++| +-.|||+|++.+. -.+++.-.||.|++...
T Consensus 386 a~s~~e~a~~~~~i~a~p~~~IaQ~~~~lST~Pt~v~~~l~pr~vdlR~f~~~~~---~~~~v~pGGLtRVal~~ 457 (488)
T COG2308 386 AASKAELAAFAERIKADPENYIAQPVLQLSTVPTFVDGGLAPRHVDLRPFALADR---DGVQVMPGGLTRVALRE 457 (488)
T ss_pred ccCHHHHHHHHHHHHhChhhhcccccccccccceEECCeeccccccceeEEEEcC---CceEEcccceeeeeecC
Confidence 4432 11 13567899998765 4666665 6899999999765 45899999999999874
No 94
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=82.72 E-value=3.3 Score=45.74 Aligned_cols=55 Identities=18% Similarity=0.105 Sum_probs=33.7
Q ss_pred CeEEEEEEEEEecCCCCeEEEEeecCCCCC-CCChhhHHHHHHHHHHHHHhcCCCc
Q psy13386 324 ACFQLLGFDILLDDTLNPYVLEVNHSPSFY-TDTEIDVEIKEQVLRDTFILCNLNS 378 (714)
Q Consensus 324 ~cFELlGfDfLLD~~lKPWLLEVN~sPSl~-tds~lD~~vK~~LI~DtL~Ll~i~~ 378 (714)
....++|+||..|.+|++|+||.|..---. ...-.+..+-.+++-+++.-.++..
T Consensus 66 ~~~~~~g~Dl~r~~dG~w~VleDn~~~PsG~gyalenR~~~~r~~p~l~~~~~v~~ 121 (330)
T PF04174_consen 66 VRLHFYGADLVRDPDGRWRVLEDNTRAPSGLGYALENRRAMSRVFPELFRDANVRR 121 (330)
T ss_dssp -S-SEEEEEEEE-SSS-EEEEEEE-SS---HHHHHHHHHHHHHH-HHHHHHS-B--
T ss_pred eEEEEEEEeeeECCCCCEEEEEecCCCCcHHHHHHHHHHHHHHhChhhhhhcCcCc
Confidence 346689999999999999999999963332 3333466777778888887776554
No 95
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=66.21 E-value=11 Score=42.69 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=39.8
Q ss_pred EEEEeCCCCCCCCcEEEEccchhhhh----ccCCceEEeecccCcccCCCceEEEEEEE
Q psy13386 154 TVIVKPDNGSNGLGISLIRNLRHLSQ----EQNRNYICQEYIANPFLIDGLKFDMRVYT 208 (714)
Q Consensus 154 ~WIvKP~~gsrGrGI~l~~~l~eI~~----~~~~~~IVQkYI~nPlLIdGrKFDLRvYV 208 (714)
-|+.||..|-.|.||.|+..-..+.. ...+.+|.|+|+.=| .++|.-.-|..|+
T Consensus 309 ~yV~KPi~gREG~nV~i~~~g~~~~~~~g~y~~~~~IyQ~~~~Lp-~f~g~~~~iGsw~ 366 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEYGGESEDTDGNYAEEPRVVQQLIEWG-RFDGCYPMIGVWM 366 (397)
T ss_pred CEEeccCCCcCCCCEEEEECCeEEeccCCCCCCCCeEEEEccCCc-ccCCcEEEEEEEE
Confidence 49999999999999999976433321 245789999999866 6688644455544
No 96
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=63.14 E-value=24 Score=42.36 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=38.9
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhh-h----ccCCceEEeecccCcccCCCceEEEEEEE
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLS-Q----EQNRNYICQEYIANPFLIDGLKFDMRVYT 208 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~-~----~~~~~~IVQkYI~nPlLIdGrKFDLRvYV 208 (714)
.-|+.||..|-.|.+|.|+..-..+. . ...+.+|.|+|..=| .++|.-.-|..|+
T Consensus 528 ~~yV~KPi~GREG~nV~i~~~~g~~~~~~~g~y~~~~~IyQ~~~~LP-~f~~~~~~iGsw~ 587 (619)
T PRK10507 528 TGYAVKPIAGRCGSNIDLVSHQEEVLDKTSGKFAEQKNIYQQLWCLP-KVDGKYIQVCTFT 587 (619)
T ss_pred CCeEeccCCCcCCCCEEEEeCCCcEeeccCCCCCCCCeEEEEeccCc-ccCCCEEEEEEEE
Confidence 34999999999999999997622222 1 245778999999855 5576544444444
No 97
>KOG3895|consensus
Probab=62.72 E-value=23 Score=39.75 Aligned_cols=102 Identities=21% Similarity=0.424 Sum_probs=61.6
Q ss_pred eecccCCCCcchhhHHHHHHHHHHHHHCC-CCCCcccceeccCcchHHHHHHHhcCC-cEEEEeCCCCCCCCcEEEEccc
Q psy13386 97 RTNHFPLIMELCRKNLLAKNLNQMKIQYP-NDYNFFPQTWILPRDNREVHAFLTSKK-ATVIVKPDNGSNGLGISLIRNL 174 (714)
Q Consensus 97 kVNHFPG~~~LtRKd~LarnL~rm~k~~p-~~y~f~P~TfiLP~d~~~f~~~~k~~k-~~WIvKP~~gsrGrGI~l~~~l 174 (714)
.||..-..+.+|.|.-+..-|.+.-+..+ +.|..+|.||. |. .. + +.+.. -..+||=..+.+|.|-.-++|-
T Consensus 188 ~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~y-Pn-HK-~---m~s~~tyPvVVkvghahsGmGKiKV~Nh 261 (488)
T KOG3895|consen 188 SVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFY-PN-HK-E---MLSQPTYPVVVKVGHAHSGMGKIKVENH 261 (488)
T ss_pred ccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeec-CC-ch-h---hccCCCCcEEEEecccccccceeeecch
Confidence 45666666778999888887777766554 77888888885 33 11 1 11211 3468899999999996666766
Q ss_pred hhhhhccCCceEEeecccC-cccCCCceEEEEE
Q psy13386 175 RHLSQEQNRNYICQEYIAN-PFLIDGLKFDMRV 206 (714)
Q Consensus 175 ~eI~~~~~~~~IVQkYI~n-PlLIdGrKFDLRv 206 (714)
.++.....--.+.+.|.+- || | .-|+|||+
T Consensus 262 ~dfqDi~svval~~Tyat~epF-i-DaKYDiri 292 (488)
T KOG3895|consen 262 EDFQDIASVVALTKTYATAEPF-I-DAKYDIRI 292 (488)
T ss_pred hhhHhHHHHHHHHhhhhhcccc-c-cccceeeh
Confidence 6655311101112333321 22 1 35788887
No 98
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=61.25 E-value=1.1e+02 Score=35.01 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=23.4
Q ss_pred EEEEeCCCCCCCCcEEEEccchhhhh
Q psy13386 154 TVIVKPDNGSNGLGISLIRNLRHLSQ 179 (714)
Q Consensus 154 ~WIvKP~~gsrGrGI~l~~~l~eI~~ 179 (714)
..|+||..+..|.|-.++.+.+++..
T Consensus 152 PvIVrP~~~lGG~G~~i~~n~eel~~ 177 (400)
T COG0458 152 PVIVKPSFGLGGSGGGIAYNEEELEE 177 (400)
T ss_pred CEEEecCcCCCCCceeEEeCHHHHHH
Confidence 57999999999999999999988774
No 99
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=60.41 E-value=39 Score=37.01 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=20.4
Q ss_pred EEEEEEecCC-CCeEEEEeecCCC
Q psy13386 329 LGFDILLDDT-LNPYVLEVNHSPS 351 (714)
Q Consensus 329 lGfDfLLD~~-lKPWLLEVN~sPS 351 (714)
|-||+-++.+ .++||||+|.--.
T Consensus 217 ~v~DVyi~~~~~~v~LID~NPf~~ 240 (299)
T PF07065_consen 217 YVFDVYITRDKDKVWLIDFNPFGP 240 (299)
T ss_pred EEEEEEEcCCCCeEEEEEecCCcc
Confidence 6899999999 9999999997644
No 100
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=48.15 E-value=82 Score=35.83 Aligned_cols=87 Identities=23% Similarity=0.256 Sum_probs=49.0
Q ss_pred CcEEEEeCCCCCCCCcEEEEccchhhhh---------------ccCCceEEeecccCcccCCCceEEEEEEEEEeeecCC
Q psy13386 152 KATVIVKPDNGSNGLGISLIRNLRHLSQ---------------EQNRNYICQEYIANPFLIDGLKFDMRVYTLITSFDPM 216 (714)
Q Consensus 152 k~~WIvKP~~gsrGrGI~l~~~l~eI~~---------------~~~~~~IVQkYI~nPlLIdGrKFDLRvYVLVTS~dPL 216 (714)
+...|||.++|.-|.||..+++.+++.. ..-...|||+-|..=-.+++.--.==
T Consensus 260 ~PfV~VKAD~GTYGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPV----------- 328 (404)
T PF08886_consen 260 KPFVFVKADAGTYGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYTFERFNDAVAEPV----------- 328 (404)
T ss_dssp ---EEEEEE-GGG-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE-----EEETTEEEEEE-----------
T ss_pred CceEEEEcCCCCCCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcchhhhhCCccccce-----------
Confidence 3667889999999999999999999863 12457899999874444566433322
Q ss_pred EEEEEe----ceEEEeccCCCCCCCCCCCCCceeEeeeccc
Q psy13386 217 RIYVHK----DGIVRFATVKYERPKQGNLTNKYMHLTNYSV 253 (714)
Q Consensus 217 rIYlY~----eGlvRfAt~~Y~~p~~~Nl~d~~~HLTNysI 253 (714)
||+-+ .|+-|..+..=. ..||+...||+--.+.
T Consensus 329 -VYmid~~vvggfyRvh~~rg~---deNLNapGm~F~plaf 365 (404)
T PF08886_consen 329 -VYMIDRYVVGGFYRVHTERGV---DENLNAPGMHFVPLAF 365 (404)
T ss_dssp -EEEETTEEEEEEEEEES--ST---TTTTS--TT-EEEEE-
T ss_pred -EEEECCEEEEEEEEecCCCCC---ccCCCCCCCEeeeccc
Confidence 33332 578888887643 5788888899875544
No 101
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=44.44 E-value=2e+02 Score=32.87 Aligned_cols=87 Identities=25% Similarity=0.299 Sum_probs=59.7
Q ss_pred CcEEEEeCCCCCCCCcEEEEccchhhhhc---------------cCCceEEeecccCcccCCCceEEEEEEEEEeeecCC
Q psy13386 152 KATVIVKPDNGSNGLGISLIRNLRHLSQE---------------QNRNYICQEYIANPFLIDGLKFDMRVYTLITSFDPM 216 (714)
Q Consensus 152 k~~WIvKP~~gsrGrGI~l~~~l~eI~~~---------------~~~~~IVQkYI~nPlLIdGrKFDLRvYVLVTS~dPL 216 (714)
+...|+|.++|.-|.||..+++.+++... .-...|||+-|..==.+++.- ..|+
T Consensus 257 ~PfViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T~E~~~~av-----------AEPV 325 (403)
T TIGR02049 257 QPYVIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEMFNEAV-----------AEPV 325 (403)
T ss_pred CCeEEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcceeeeeCCcc-----------cCce
Confidence 36778999999999999999999998741 235789999885322233321 2332
Q ss_pred EEEEEe----ceEEEeccCCCCCCCCCCCCCceeEeeeccc
Q psy13386 217 RIYVHK----DGIVRFATVKYERPKQGNLTNKYMHLTNYSV 253 (714)
Q Consensus 217 rIYlY~----eGlvRfAt~~Y~~p~~~Nl~d~~~HLTNysI 253 (714)
||+.. .|+-|..+..=. ..|++..-||+---+.
T Consensus 326 -VYmid~~vvggfYRvh~~Rg~---dENLNapG~~F~plaf 362 (403)
T TIGR02049 326 -VYMIGRTVTGGFYRVHTGRGV---DENLNAPGMHFVPLSF 362 (403)
T ss_pred -EEEECCEEeEEEEEecCCCCC---cccCCCCCCeeeeccc
Confidence 34433 577888887643 5788888899874443
No 102
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=42.56 E-value=29 Score=32.47 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=25.2
Q ss_pred EEEEccCcc--HHHHHHHHHhCCCEEcCCCCCeEEEEeCC
Q psy13386 45 ATICLDLCS--YELVGRVARQCGMTVVDDKSLWDVLWSDP 82 (714)
Q Consensus 45 i~i~~~~~~--y~~Vr~vl~~~G~~~v~e~~~wdl~W~d~ 82 (714)
=+||+++|. .++.+++|+++|+.. ...+|++++.+.
T Consensus 13 k~VNV~~c~~a~eI~~rvLKKfg~~~--~~~~~~~~v~d~ 50 (105)
T PF14847_consen 13 KTVNVSGCFNAQEIKRRVLKKFGLPE--HPRNYCFYVLDG 50 (105)
T ss_dssp EEEE--S--HHHHHHHHHHHHHTSS----CCCEEEEEE-S
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCcc--ccccceEEEecc
Confidence 368888876 578899999999987 567899999987
No 103
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=41.14 E-value=23 Score=39.28 Aligned_cols=52 Identities=23% Similarity=0.377 Sum_probs=39.7
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhh-------------ccCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQ-------------EQNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~-------------~~~~~~IVQkYI~ 192 (714)
+|+.|-=|.|.+ ...|||....-+|||-|+.++.++... ..-..+.+|+||-
T Consensus 139 ~P~~~~~PeeId----------r~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~ 203 (361)
T COG1759 139 IPKKYKSPEEID----------RPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVV 203 (361)
T ss_pred CCcccCChHHcC----------CceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEee
Confidence 566666565544 678999998888999999999988653 1234688999985
No 104
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=39.62 E-value=1.5e+02 Score=34.37 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=46.9
Q ss_pred CCCeEEEEEEEEEecCCCCeEEEEeec-CCCCCCCChhhHHHHHHHHHHHHHhcCCCch
Q psy13386 322 MTACFQLLGFDILLDDTLNPYVLEVNH-SPSFYTDTEIDVEIKEQVLRDTFILCNLNSS 379 (714)
Q Consensus 322 ~~~cFELlGfDfLLD~~lKPWLLEVN~-sPSl~tds~lD~~vK~~LI~DtL~Ll~i~~~ 379 (714)
....-.+.|+|++-|.+|+.|+||=|. .||=.+..--+.++-.+++-|++.-..+..-
T Consensus 141 ~g~y~H~~g~dl~R~~dG~~~VLeDn~r~PSGvsY~LenR~~~~r~~Pely~~~~vr~v 199 (488)
T COG2308 141 GGHYLHVCGTDLIRDPDGNFQVLEDNLRAPSGVSYALENRRAMARAFPELYEELRVRPV 199 (488)
T ss_pred CceEEEEeeeheeECCCCCEEEecccCcCCCchhHHHHhHHHHHHHChHHHhhcCCccc
Confidence 345778899999999999999999998 5776665556778888888888887776543
No 105
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=39.12 E-value=13 Score=41.25 Aligned_cols=86 Identities=26% Similarity=0.291 Sum_probs=41.2
Q ss_pred eecccCCCCcchhhHHHHHHHHHHHHHC-CCC--CCcccceeccC-cchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEc
Q psy13386 97 RTNHFPLIMELCRKNLLAKNLNQMKIQY-PND--YNFFPQTWILP-RDNREVHAFLTSKKATVIVKPDNGSNGLGISLIR 172 (714)
Q Consensus 97 kVNHFPG~~~LtRKd~LarnL~rm~k~~-p~~--y~f~P~TfiLP-~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~ 172 (714)
.+ +-||+..+-.|..++-. -+|.+.+ +++ ..-+|.+||-. .+.+.+.+.+ .-|++||..++.|+|+.+-.
T Consensus 234 ia-Na~G~gv~edkal~~~l-p~~~r~~LgeellL~~VpT~~cg~~~~~~~Vl~~l----~~lvvKp~~g~gg~~~~~G~ 307 (330)
T PF04174_consen 234 IA-NAPGSGVAEDKALYAFL-PRMIRYYLGEELLLPNVPTWWCGDPEDREYVLANL----DELVVKPADGYGGKGVYIGP 307 (330)
T ss_dssp EE-S-TTTHHHHSTTTGGGH-HHHHHHHH-S--SSEE---EETTSHHHHHHHHHSG----GGEEEEE--------EEEGG
T ss_pred EE-CCCccchhcchhHHHHh-HHHHHHHcCCCcccCCCCcEeCCCHHHHHHHHhch----hhcEEEecCCCCCCcceeCC
Confidence 44 66999999888766643 4444433 222 23377777763 3333333333 56899999999999998866
Q ss_pred cchh----hhh---ccCCceEEe
Q psy13386 173 NLRH----LSQ---EQNRNYICQ 188 (714)
Q Consensus 173 ~l~e----I~~---~~~~~~IVQ 188 (714)
+.+. +.+ .....||.|
T Consensus 308 ~~s~e~~~~~~~I~~~P~~yVAQ 330 (330)
T PF04174_consen 308 KLSAERRALRAEILARPHRYVAQ 330 (330)
T ss_dssp G--HHHHHHHHHHHHSGGGEEEE
T ss_pred cCCHHHHHHHHHHHhCccCCccC
Confidence 6652 111 133478887
No 106
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=26.23 E-value=84 Score=34.84 Aligned_cols=150 Identities=19% Similarity=0.227 Sum_probs=79.6
Q ss_pred cceeEeecCCCCCCcccCccccccCCCccccccccceEEEEEEcc--CccHHHHHHHHHhCCCE---EcCCCCCeEEEEe
Q psy13386 6 IGSITILSDTSLPPIEQSSTSLITGDSDLSSKKSRVRVVATICLD--LCSYELVGRVARQCGMT---VVDDKSLWDVLWS 80 (714)
Q Consensus 6 ~~~~~~~~~~~~~p~~~~~~~~~~gd~~~~~~k~r~~~~i~i~~~--~~~y~~Vr~vl~~~G~~---~v~e~~~wdl~W~ 80 (714)
+-+.+.++|+-+|-+.... +..+.++.. ..-...+++.++.+|.+ .+.-. |-.+...
T Consensus 27 vpv~~ls~d~plPt~Sr~v-----------------r~t~~w~gphd~gaiafLrd~Aekhglkg~LLva~G-Dgev~lv 88 (415)
T COG3919 27 VPVLALSADGPLPTYSRIV-----------------RVTTHWNGPHDEGAIAFLRDFAEKHGLKGYLLVACG-DGEVLLV 88 (415)
T ss_pred ceEEEEecCCCCcchhhhh-----------------eeeeccCCCCcccHHHHHHHHHhhcCcCceEEEecC-Cceeeeh
Confidence 4456677777777654433 122334432 23456788888888754 33211 1111111
Q ss_pred CCCCChhhhhhc-----CcCceecccCCCCcchhhHHHHHHHHHHHHHCCCCCCcccceeccCcchHHHHHHHhcCCcEE
Q psy13386 81 DPCIGPDTHRRM-----KRFQRTNHFPLIMELCRKNLLAKNLNQMKIQYPNDYNFFPQTWILPRDNREVHAFLTSKKATV 155 (714)
Q Consensus 81 d~~~~~e~~~~l-----~~~QkVNHFPG~~~LtRKd~LarnL~rm~k~~p~~y~f~P~TfiLP~d~~~f~~~~k~~k~~W 155 (714)
. ...|.+..+ -+||. -..+|.|-.|.+.-.++ ---+|+||.+-++.+.....+. -.-
T Consensus 89 S--q~reeLSa~f~v~lp~w~~------l~wlceKPllY~ra~el-------gl~~P~Ty~v~S~~d~~~~el~---FPv 150 (415)
T COG3919 89 S--QYREELSAFFEVPLPDWAL------LRWLCEKPLLYNRAEEL-------GLPYPKTYLVNSEIDTLVDELT---FPV 150 (415)
T ss_pred H--hhHHHHHHHhcCCCCcHHH------HHHHhhCcHHHHHHHHh-------CCCCcceEEecchhhhhhhhee---eeE
Confidence 1 122333221 22322 23578888887644321 1348999999876665544332 237
Q ss_pred EEeCCCCCC------CCcEEEEccchhhhh--------ccCCceEEeeccc
Q psy13386 156 IVKPDNGSN------GLGISLIRNLRHLSQ--------EQNRNYICQEYIA 192 (714)
Q Consensus 156 IvKP~~gsr------GrGI~l~~~l~eI~~--------~~~~~~IVQkYI~ 192 (714)
|+||.+|.. .+ .+...+-+++.. ...+++|||++|.
T Consensus 151 ILKP~mgg~~~~~araK-a~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IP 200 (415)
T COG3919 151 ILKPGMGGSVHFEARAK-AFTAADNEEMKLALHRAYEEIGPDNVVVQEFIP 200 (415)
T ss_pred EecCCCCCcceeehhhh-eeeccCHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 999976541 11 123334444442 3567899999995
No 107
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=20.48 E-value=82 Score=35.57 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=32.7
Q ss_pred EEEEeCCCCCCCCcEEEEccchhhhh-----ccCCceEEeecccCc
Q psy13386 154 TVIVKPDNGSNGLGISLIRNLRHLSQ-----EQNRNYICQEYIANP 194 (714)
Q Consensus 154 ~WIvKP~~gsrGrGI~l~~~l~eI~~-----~~~~~~IVQkYI~nP 194 (714)
.|+.||..|-.|-+|.++.+...... ...+.+|.|+|..=|
T Consensus 298 ~yv~KPl~gREGaNv~i~~~~~~~~~~~~G~Yg~eg~IyQe~~~Lp 343 (387)
T COG0754 298 SYVRKPLFGREGANVSIFEDAGKVLDKADGPYGEEGMIYQEFYPLP 343 (387)
T ss_pred hhhccccccccCCCeeEEecCCceeecCCCCccccchhhhhhccCc
Confidence 48999999999999999987544432 356789999999744
Done!