Query psy13386
Match_columns 714
No_of_seqs 334 out of 1353
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 18:09:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tig_A TTL protein; ATP-grAsp, 100.0 8.5E-67 2.9E-71 564.9 23.3 305 50-375 13-358 (380)
2 4eg0_A D-alanine--D-alanine li 98.8 6.8E-08 2.3E-12 100.7 15.5 162 131-358 122-292 (317)
3 1iow_A DD-ligase, DDLB, D-ALA\ 98.8 2.2E-07 7.5E-12 94.9 18.6 69 131-209 111-193 (306)
4 4fu0_A D-alanine--D-alanine li 98.8 2.6E-07 8.9E-12 98.4 19.5 164 131-358 154-325 (357)
5 2q7d_A Inositol-tetrakisphosph 98.8 1.6E-07 5.6E-12 100.6 17.7 148 55-209 36-214 (346)
6 2i87_A D-alanine-D-alanine lig 98.7 2.8E-07 9.4E-12 98.1 18.5 163 131-357 144-318 (364)
7 3se7_A VANA; alpha-beta struct 98.7 3.2E-07 1.1E-11 97.1 17.5 166 131-358 147-318 (346)
8 1e4e_A Vancomycin/teicoplanin 98.7 7.5E-07 2.6E-11 93.9 19.9 146 153-357 166-317 (343)
9 1z2n_X Inositol 1,3,4-trisphos 98.7 4.9E-07 1.7E-11 93.7 17.6 72 130-209 112-188 (324)
10 3k3p_A D-alanine--D-alanine li 98.7 3.5E-07 1.2E-11 99.1 16.6 164 131-358 177-349 (383)
11 3i12_A D-alanine-D-alanine lig 98.6 7.6E-07 2.6E-11 95.2 18.4 162 131-358 155-328 (364)
12 1i7n_A Synapsin II; synapse, p 98.6 7.3E-07 2.5E-11 94.5 17.0 103 95-209 99-208 (309)
13 3e5n_A D-alanine-D-alanine lig 98.6 6.3E-07 2.2E-11 97.0 16.4 162 131-358 174-347 (386)
14 3tqt_A D-alanine--D-alanine li 98.6 9.7E-07 3.3E-11 95.2 17.6 142 153-358 180-329 (372)
15 1pk8_A RAT synapsin I; ATP bin 98.6 1.3E-06 4.3E-11 96.2 18.3 71 127-209 244-320 (422)
16 2p0a_A Synapsin-3, synapsin II 98.5 6.7E-07 2.3E-11 96.1 14.5 104 94-209 115-225 (344)
17 1ehi_A LMDDL2, D-alanine:D-lac 98.5 3E-06 1E-10 91.0 18.5 165 131-356 150-327 (377)
18 1uc8_A LYSX, lysine biosynthes 98.5 1.1E-07 3.7E-12 95.6 6.3 72 131-209 103-184 (280)
19 3r5x_A D-alanine--D-alanine li 98.5 8.4E-07 2.9E-11 91.3 13.1 68 131-209 112-188 (307)
20 2fb9_A D-alanine:D-alanine lig 98.5 1.7E-06 5.7E-11 90.8 15.4 50 153-210 151-207 (322)
21 3lwb_A D-alanine--D-alanine li 98.4 3.1E-06 1.1E-10 91.1 14.1 142 153-357 189-342 (373)
22 3q2o_A Phosphoribosylaminoimid 98.3 1E-05 3.5E-10 86.7 17.5 61 131-192 127-192 (389)
23 2r85_A PURP protein PF1517; AT 98.3 1.5E-06 5.3E-11 89.7 10.6 46 153-204 127-183 (334)
24 3ax6_A Phosphoribosylaminoimid 98.3 7.8E-06 2.7E-10 87.0 16.4 69 131-210 115-184 (380)
25 3k5i_A Phosphoribosyl-aminoimi 98.3 1.3E-05 4.5E-10 86.8 17.8 62 131-192 138-205 (403)
26 2pvp_A D-alanine-D-alanine lig 98.3 4.6E-06 1.6E-10 89.7 13.1 61 131-192 164-231 (367)
27 3ouz_A Biotin carboxylase; str 98.2 2.7E-05 9.4E-10 84.8 16.7 73 131-210 134-219 (446)
28 4dim_A Phosphoribosylglycinami 98.2 2.9E-05 1E-09 82.9 16.6 71 131-208 124-202 (403)
29 1ulz_A Pyruvate carboxylase N- 98.2 2.3E-05 7.8E-10 85.4 15.8 72 131-210 129-214 (451)
30 2z04_A Phosphoribosylaminoimid 98.2 2.6E-06 8.9E-11 90.0 7.8 71 131-210 107-183 (365)
31 3vot_A L-amino acid ligase, BL 98.1 2E-05 6.9E-10 85.1 14.2 68 131-207 127-211 (425)
32 4e4t_A Phosphoribosylaminoimid 98.1 5.6E-05 1.9E-09 82.5 17.5 60 131-192 148-216 (419)
33 1kjq_A GART 2, phosphoribosylg 98.1 5.5E-05 1.9E-09 80.3 16.9 71 131-209 128-208 (391)
34 2vpq_A Acetyl-COA carboxylase; 98.1 3.6E-05 1.2E-09 83.8 15.7 65 139-210 138-214 (451)
35 3orq_A N5-carboxyaminoimidazol 98.1 4.8E-05 1.6E-09 81.6 16.2 61 131-192 125-190 (377)
36 3lp8_A Phosphoribosylamine-gly 98.1 2.6E-05 9E-10 85.7 13.6 61 131-192 138-210 (442)
37 1gsa_A Glutathione synthetase; 98.1 1.7E-05 5.8E-10 80.8 11.3 73 130-209 134-214 (316)
38 3aw8_A PURK, phosphoribosylami 98.1 0.00012 4E-09 77.6 18.0 72 131-210 111-187 (369)
39 2yw2_A Phosphoribosylamine--gl 98.0 3.9E-05 1.3E-09 82.7 13.9 61 131-192 117-189 (424)
40 3mjf_A Phosphoribosylamine--gl 98.0 1.9E-05 6.5E-10 86.4 11.0 71 131-210 122-204 (431)
41 2ip4_A PURD, phosphoribosylami 98.0 5.8E-05 2E-09 81.3 14.7 71 131-210 116-194 (417)
42 2xcl_A Phosphoribosylamine--gl 98.0 3.6E-05 1.2E-09 83.0 12.4 71 131-210 117-199 (422)
43 2dwc_A PH0318, 433AA long hypo 97.9 6.9E-05 2.4E-09 81.2 14.0 61 131-192 136-206 (433)
44 3ln6_A Glutathione biosynthesi 97.9 2.6E-05 8.8E-10 91.6 10.7 70 131-209 499-578 (750)
45 2w70_A Biotin carboxylase; lig 97.9 0.00011 3.8E-09 79.9 14.8 72 131-210 130-216 (449)
46 2yrx_A Phosphoribosylglycinami 97.9 0.00012 4.1E-09 80.0 15.0 71 131-210 138-220 (451)
47 3glk_A Acetyl-COA carboxylase 97.9 0.00022 7.6E-09 80.7 16.7 54 140-193 216-277 (540)
48 3jrx_A Acetyl-COA carboxylase 97.8 0.0003 1E-08 80.5 16.8 54 140-193 232-293 (587)
49 1w96_A ACC, acetyl-coenzyme A 97.8 0.00042 1.4E-08 78.1 17.9 54 139-192 221-282 (554)
50 1vkz_A Phosphoribosylamine--gl 97.8 0.00067 2.3E-08 73.3 18.5 61 131-192 121-193 (412)
51 3df7_A Putative ATP-grAsp supe 97.8 0.00011 3.7E-09 76.8 11.9 43 153-210 134-176 (305)
52 2dzd_A Pyruvate carboxylase; b 97.8 0.00046 1.6E-08 75.4 17.0 63 131-193 135-210 (461)
53 2pn1_A Carbamoylphosphate synt 97.7 0.00017 5.9E-09 74.7 12.3 59 131-192 129-191 (331)
54 3t7a_A Inositol pyrophosphate 97.7 0.00027 9.2E-09 75.1 13.3 155 42-209 7-216 (330)
55 2qk4_A Trifunctional purine bi 97.7 0.00036 1.2E-08 76.1 14.6 71 131-210 143-226 (452)
56 3vmm_A Alanine-anticapsin liga 97.7 0.00028 9.5E-09 78.4 13.7 63 131-194 154-234 (474)
57 3eth_A Phosphoribosylaminoimid 97.6 0.0012 4.2E-08 70.8 16.5 126 57-192 16-157 (355)
58 3ln7_A Glutathione biosynthesi 97.6 0.00025 8.7E-09 83.3 11.7 70 131-209 504-584 (757)
59 3n6r_A Propionyl-COA carboxyla 97.4 0.00021 7.2E-09 83.0 8.9 72 131-209 130-214 (681)
60 3u9t_A MCC alpha, methylcroton 97.4 0.00029 1E-08 81.7 9.8 64 131-194 156-232 (675)
61 1a9x_A Carbamoyl phosphate syn 97.3 0.0018 6.1E-08 78.8 15.0 61 131-192 689-757 (1073)
62 1a9x_A Carbamoyl phosphate syn 97.1 0.0025 8.4E-08 77.6 13.4 61 131-192 143-211 (1073)
63 3hbl_A Pyruvate carboxylase; T 97.0 0.0021 7.1E-08 78.9 11.4 54 141-194 144-209 (1150)
64 3n6x_A Putative glutathionylsp 97.0 0.00059 2E-08 76.2 6.0 129 95-232 307-453 (474)
65 2qf7_A Pyruvate carboxylase pr 97.0 0.0017 5.8E-08 79.7 10.5 63 141-210 160-234 (1165)
66 4ffl_A PYLC; amino acid, biosy 97.0 0.0025 8.5E-08 67.2 10.3 39 153-192 126-164 (363)
67 3va7_A KLLA0E08119P; carboxyla 96.8 0.0054 1.9E-07 75.7 12.5 55 139-193 167-233 (1236)
68 2r7k_A 5-formaminoimidazole-4- 96.4 0.0085 2.9E-07 64.5 9.8 40 153-192 151-203 (361)
69 2cqy_A Propionyl-COA carboxyla 95.7 0.012 4.2E-07 50.7 5.2 63 131-194 23-99 (108)
70 2pbz_A Hypothetical protein; N 94.8 0.22 7.5E-06 52.8 12.6 39 153-192 126-167 (320)
71 2io8_A Bifunctional glutathion 85.0 1.4 4.7E-05 50.9 7.4 80 106-199 494-578 (619)
72 2vob_A Trypanothione synthetas 76.8 2.9 9.9E-05 48.5 6.3 88 106-207 509-601 (652)
73 3n6x_A Putative glutathionylsp 55.1 26 0.00091 39.1 8.2 93 287-379 81-196 (474)
74 1wr2_A Hypothetical protein PH 54.8 9.5 0.00032 37.7 4.2 61 131-192 36-117 (238)
75 3k1t_A Glutamate--cysteine lig 54.5 54 0.0018 36.0 10.1 88 153-251 278-380 (432)
76 4e9m_A Nucleotide-binding olig 20.6 5.1 0.00018 38.0 -4.1 18 338-355 105-122 (144)
No 1
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=100.00 E-value=8.5e-67 Score=564.94 Aligned_cols=305 Identities=22% Similarity=0.398 Sum_probs=229.1
Q ss_pred cCccHHHHHHHHHhCC-CEEcCC-CCCeEEEEeCCCC-Chhhhhhc-CcCceecccCCCCcchhhHHHHHHHHHHHHHCC
Q psy13386 50 DLCSYELVGRVARQCG-MTVVDD-KSLWDVLWSDPCI-GPDTHRRM-KRFQRTNHFPLIMELCRKNLLAKNLNQMKIQYP 125 (714)
Q Consensus 50 ~~~~y~~Vr~vl~~~G-~~~v~e-~~~wdl~W~d~~~-~~e~~~~l-~~~QkVNHFPG~~~LtRKd~LarnL~rm~k~~p 125 (714)
..+.|++|+++|.+.| |+++.+ +.+|||+|++... ++.++... ..+|+||||||+++|||||.|++||+++. .++
T Consensus 13 ~~svy~~V~~vL~~~g~w~ev~~~~~~~dl~W~~~~~~p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~-~~~ 91 (380)
T 3tig_A 13 NSTVYAEVAKILLASGQWKRLKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSP-ELT 91 (380)
T ss_dssp SCHHHHHHHHHHHHTTSEEECCTTCSCCSEEECCSSSCCGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHCH-HHH
T ss_pred CccHHHHHHHHHHhcCCeEEeCCCCCceeEEEecCCCCCHHHhccCCCcceEEeecCCcccccccHHHHHHHHHhh-hcc
Confidence 4578999999999999 988864 6789999998754 45555443 67999999999999999999999999954 467
Q ss_pred CCCCcccceecc-Cc-----------------------chHHHHHHHhc-----CCcEEEEeCCCCCCCCcEEEEccchh
Q psy13386 126 NDYNFFPQTWIL-PR-----------------------DNREVHAFLTS-----KKATVIVKPDNGSNGLGISLIRNLRH 176 (714)
Q Consensus 126 ~~y~f~P~TfiL-P~-----------------------d~~~f~~~~k~-----~k~~WIvKP~~gsrGrGI~l~~~l~e 176 (714)
..++|+|+||.| |. |+.+|.+++++ .+++||+||.++++|+||++++++++
T Consensus 92 ~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~~srG~GI~l~~~~~~ 171 (380)
T 3tig_A 92 ETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDATE 171 (380)
T ss_dssp TTCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESCC----CCBCCSCSHH
T ss_pred cccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCccCCCCCEEEeCCHHH
Confidence 889999999999 76 45578776643 23999999999999999999999999
Q ss_pred hhhc---cCCceEEeecccCcccC--CCceEEEEEEEEEeeecCCEEEEEeceEEEeccCCCCCCCCCCCCCceeEeeec
Q psy13386 177 LSQE---QNRNYICQEYIANPFLI--DGLKFDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNY 251 (714)
Q Consensus 177 I~~~---~~~~~IVQkYI~nPlLI--dGrKFDLRvYVLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~~~Nl~d~~~HLTNy 251 (714)
+... ....+|||+||+||+|| +|+|||||+|||||| ||+||+|++|++|||+++|+. .|++|.++||||+
T Consensus 172 i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts--~l~vy~y~~g~~Rfa~~~y~~---~~~~~~~~HLTN~ 246 (380)
T 3tig_A 172 LLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSD---TNFQDMTSHLTNH 246 (380)
T ss_dssp HHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT--TCCEEECSCCEEEECC---------------------
T ss_pred HHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEEEcC--CCEEEEEcCCEEEecCCCcCc---cchhhhhhhcccc
Confidence 8642 46789999999999999 999999999999999 999999999999999999984 5788899999999
Q ss_pred ccccc-CCCcccccccCCccChhHHHHHHHHc-CCCh-hHHHHHHHHHHHHHHHHhhhhHHHhhcccCCCCCCCCCeEEE
Q psy13386 252 SVNKH-SISFIHDEEVGSKRKISTINQWFCRM-GYDT-DLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQL 328 (714)
Q Consensus 252 sInK~-s~nf~~dee~Gsk~sLs~l~~~L~~~-G~d~-~~lw~~IkdiIikTllAa~p~L~~~y~~~~~~~~~~~~cFEL 328 (714)
+|||+ +++|... +.|++|+++.|++||.+. |.++ +.+|.+|+++|++++.|+++.+.... ...+|||+
T Consensus 247 ~iqk~~~~~y~~~-~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a~~~~i~~~~--------~~~~~FEl 317 (380)
T 3tig_A 247 CIQKEHSKNYGRY-EEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKY--------LPYHSFQL 317 (380)
T ss_dssp -----------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHHHHHHHCCTT--------SSSEECEE
T ss_pred ccccccccccccc-cCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhhhcc--------cCCceEEE
Confidence 99996 5677653 458999999999999864 5555 58999999999999999998874321 23579999
Q ss_pred EEEEEEecCCCCeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcC
Q psy13386 329 LGFDILLDDTLNPYVLEVNHSPSFYTDTEIDVEIKEQVLRDTFILCN 375 (714)
Q Consensus 329 lGfDfLLD~~lKPWLLEVN~sPSl~tds~lD~~vK~~LI~DtL~Ll~ 375 (714)
||||||||++++|||||||++|++... +..+|++++|+++.
T Consensus 318 ~G~D~lid~~l~~wllEVN~~P~~~q~------~i~~l~~~~~~iav 358 (380)
T 3tig_A 318 FGFDFMVDKNLKVWLIEVNGAPACAQK------LYAELCKGIVDLAI 358 (380)
T ss_dssp EEEEEEEBTTCCEEEEEEESSCCCCTT------THHHHHHHHHHHTT
T ss_pred EeEEEEEcCCCcEEEEEEeCCCCccHH------hHHHHHHHHHHHhc
Confidence 999999999999999999999999753 56677777777653
No 2
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=98.79 E-value=6.8e-08 Score=100.67 Aligned_cols=162 Identities=17% Similarity=0.193 Sum_probs=85.4
Q ss_pred ccceeccCc--chHHHHHHH-hcCCcEEEEeCCCCCCCCcEEEEccchhhhh------ccCCceEEeecccCcccCCCce
Q psy13386 131 FPQTWILPR--DNREVHAFL-TSKKATVIVKPDNGSNGLGISLIRNLRHLSQ------EQNRNYICQEYIANPFLIDGLK 201 (714)
Q Consensus 131 ~P~TfiLP~--d~~~f~~~~-k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~------~~~~~~IVQkYI~nPlLIdGrK 201 (714)
.|+++.+.. +..++...+ ..-.-.+|+||..++.|+||.++++.+++.. .....++||+||.. |+
T Consensus 122 ~p~~~~~~~~~~~~~~~~~~~~~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~i~~-----G~- 195 (317)
T 4eg0_A 122 TPPFETVMRGDDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAATHDKIVIVEKSIEG-----GG- 195 (317)
T ss_dssp CCCEEEEETTSCHHHHHHHHHHHHCSCEEEEECC-----CCEEECSGGGHHHHHHHHTTTCSEEEEEECCCS-----SE-
T ss_pred CCCEEEEECchhHHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCC-----Cc-
Confidence 577777643 343333111 1112458999999999999999999988763 13568999999962 54
Q ss_pred EEEEEEEEEeeecCCEEEEEeceEEEeccCCCCCCCCCCCCCceeEeeeccccccCCCcccccccCCccChhHHHHHHHH
Q psy13386 202 FDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQWFCR 281 (714)
Q Consensus 202 FDLRvYVLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~~~Nl~d~~~HLTNysInK~s~nf~~dee~Gsk~sLs~l~~~L~~ 281 (714)
++++.|+-...-|.......+++..+.. +|. .+...|.+ -.
T Consensus 196 -E~~v~vl~~~~~~~~~i~~~~~~~~~~~-k~~-------~g~~~~~~-----------------P~------------- 236 (317)
T 4eg0_A 196 -EYTACIAGDLDLPLIKIVPAGEFYDYHA-KYV-------ANDTQYLI-----------------PC------------- 236 (317)
T ss_dssp -EEEEEEETTCCCCCEEEEC-----------------------CEEES-----------------SC-------------
T ss_pred -EEEEEEECCcccceEEEeeCCceechhh-ccc-------CCCeeEEc-----------------CC-------------
Confidence 6666665322222111111111000000 000 00000000 00
Q ss_pred cCCChhHHHHHHHHHHHHHHHHhhhhHHHhhcccCCCCCCCCCeEEEEEEEEEecCCCCeEEEEeecCCCCCCCChh
Q psy13386 282 MGYDTDLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEI 358 (714)
Q Consensus 282 ~G~d~~~lw~~IkdiIikTllAa~p~L~~~y~~~~~~~~~~~~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds~l 358 (714)
.. .+.+.++|.++..+.+.+. +|..+.++||++|.+++||+||||..|+|+..+.+
T Consensus 237 -~l-~~~~~~~l~~~a~~~~~~l-------------------g~~G~~~vD~~~~~~g~~~vlEiN~~pg~t~~s~~ 292 (317)
T 4eg0_A 237 -GL-PAEQETELKRIARRAFDVL-------------------GCTDWGRADFMLDAAGNAYFLEVNTAPGMTDHSLP 292 (317)
T ss_dssp -SS-CHHHHHHHHHHHHHHHHTT-------------------TCCSEEEEEEEECTTCCEEEEEEESSCCCSTTSHH
T ss_pred -CC-CHHHHHHHHHHHHHHHHHh-------------------CCCceEEEEEEEeCCCCEEEEEeeCCCCCCcccHH
Confidence 00 2334455555554443221 35557899999999999999999999999877654
No 3
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=98.78 E-value=2.2e-07 Score=94.91 Aligned_cols=69 Identities=20% Similarity=0.334 Sum_probs=51.1
Q ss_pred ccceeccCcchHHHHH--------HHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------cCCceEEeecccCccc
Q psy13386 131 FPQTWILPRDNREVHA--------FLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------QNRNYICQEYIANPFL 196 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~--------~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------~~~~~IVQkYI~nPlL 196 (714)
.|+|+.+... ++.. +.....-.+|+||..++.|+|++++++.+++... ....++||+||+
T Consensus 111 ~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~---- 184 (306)
T 1iow_A 111 VAPWVALTRA--EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS---- 184 (306)
T ss_dssp BCCEEEEEHH--HHHHCCCTHHHHHHHTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTTTCSEEEEEECCC----
T ss_pred CCCeEEEchh--hhhccchhhhhhHHhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhCCCEEEEeCcC----
Confidence 7888877543 3444 4444444689999999999999999998887641 257899999996
Q ss_pred CCCceEEEEEEEE
Q psy13386 197 IDGLKFDMRVYTL 209 (714)
Q Consensus 197 IdGrKFDLRvYVL 209 (714)
|+ ++++.++
T Consensus 185 --g~--e~~v~~~ 193 (306)
T 1iow_A 185 --GP--EFTVAIL 193 (306)
T ss_dssp --CC--EEEEEEE
T ss_pred --CE--EEEEEEE
Confidence 54 7777765
No 4
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=98.77 E-value=2.6e-07 Score=98.43 Aligned_cols=164 Identities=14% Similarity=0.214 Sum_probs=92.5
Q ss_pred ccceeccCc--chHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhh------ccCCceEEeecccCcccCCCceE
Q psy13386 131 FPQTWILPR--DNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQ------EQNRNYICQEYIANPFLIDGLKF 202 (714)
Q Consensus 131 ~P~TfiLP~--d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~------~~~~~~IVQkYI~nPlLIdGrKF 202 (714)
.|+++.+.. +..++......-.-.+|+||.+++.|+||.++++.+++.. .....+++|+||. |+-+
T Consensus 154 ~p~~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i~------G~e~ 227 (357)
T 4fu0_A 154 VPKSVTFKRFNEEAAMKEIEANLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFEHDTEVIVEETIN------GFEV 227 (357)
T ss_dssp CCCEEEEEGGGHHHHHHHHHHHCCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCC------SEEE
T ss_pred CCCEEeecCCChHHHHHHHHHhcCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhccCCeEEEEEecC------CEEE
Confidence 577766643 1222333333334568999999999999999999998864 2456789999984 5544
Q ss_pred EEEEEEEEeeecCCEEEEEeceEEEeccCCCCCCCCCCCCCceeEeeeccccccCCCcccccccCCccChhHHHHHHHHc
Q psy13386 203 DMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQWFCRM 282 (714)
Q Consensus 203 DLRvYVLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~~~Nl~d~~~HLTNysInK~s~nf~~dee~Gsk~sLs~l~~~L~~~ 282 (714)
. +.|+... -..+ ..-+.......-|+.. .+...+...+.+ .-
T Consensus 228 ~--v~vl~~~--~~~~--~~v~~~~~~~~~~d~~-~k~~~~~~~~~~-------------------pa------------ 269 (357)
T 4fu0_A 228 G--CAVLGID--ELIV--GRVDEIELSSGFFDYT-EKYTLKSSKIYM-------------------PA------------ 269 (357)
T ss_dssp E--EEEEESS--SEEE--CCCEEEEECHHHHTSC-SBCSSCCEEEES-------------------SC------------
T ss_pred E--EEEEecC--CceE--EEEEEEEccccccccc-ccccCCCceEec-------------------CC------------
Confidence 4 3343211 1100 0001111111111100 000000000000 00
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhhhHHHhhcccCCCCCCCCCeEEEEEEEEEecCCCCeEEEEeecCCCCCCCChh
Q psy13386 283 GYDTDLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEI 358 (714)
Q Consensus 283 G~d~~~lw~~IkdiIikTllAa~p~L~~~y~~~~~~~~~~~~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds~l 358 (714)
.. .+.+.++|.++..+++.+. +|..+.++||++|.++++|+||||..|+|+..|-+
T Consensus 270 ~l-~~~~~~~i~~~A~~~~~aL-------------------g~~G~~~VDf~~~~dg~~~vlEvNt~PG~t~~S~~ 325 (357)
T 4fu0_A 270 RI-DAEAEKRIQEAAVTIYKAL-------------------GCSGFSRVDMFYTPSGEIVFNEVNTIPGFTSHSRY 325 (357)
T ss_dssp SC-CHHHHHHHHHHHHHHHHHT-------------------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred CC-CHHHHHHHHHHHHHHHHHh-------------------CCcceEEEEEEEeCCCCEEEEEEeCCCCCCcccHH
Confidence 01 2345566666655554332 46678899999999999999999999999877643
No 5
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=98.76 E-value=1.6e-07 Score=100.59 Aligned_cols=148 Identities=16% Similarity=0.214 Sum_probs=88.5
Q ss_pred HHHHHHHHhCCCEEc--CCC------CCeEEEEeCCCC--------C---hhhhhhcC-------cCceecccCCCCcch
Q psy13386 55 ELVGRVARQCGMTVV--DDK------SLWDVLWSDPCI--------G---PDTHRRMK-------RFQRTNHFPLIMELC 108 (714)
Q Consensus 55 ~~Vr~vl~~~G~~~v--~e~------~~wdl~W~d~~~--------~---~e~~~~l~-------~~QkVNHFPG~~~Lt 108 (714)
.-+.+++++.|+..+ +.+ ..+|+++....- + ...+..+. ..-.+|-..+...+.
T Consensus 36 ~~l~~al~~~G~~~~~iD~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~~~~~~~~gv~vinp~~ai~~~~ 115 (346)
T 2q7d_A 36 QAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLL 115 (346)
T ss_dssp HHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHHHHHCTTSEEESCHHHHHHTT
T ss_pred HHHHHHHHhCCcEEEEcccccchhhcCCCCEEEeCCcccccccccCchhHHHHHHHHHHHHHHCCCeEEcCCHHHHHHhh
Confidence 456778899998754 211 246676664321 0 01111121 233456655656667
Q ss_pred hhHHHHHHHHHHHHHCCCCCCcccceeccCcc-hHHHHHHHhcC--CcEEEEeCCC--CCCCCcEEEEccchhhhhccCC
Q psy13386 109 RKNLLAKNLNQMKIQYPNDYNFFPQTWILPRD-NREVHAFLTSK--KATVIVKPDN--GSNGLGISLIRNLRHLSQEQNR 183 (714)
Q Consensus 109 RKd~LarnL~rm~k~~p~~y~f~P~TfiLP~d-~~~f~~~~k~~--k~~WIvKP~~--gsrGrGI~l~~~l~eI~~~~~~ 183 (714)
.|-.+.+.|.+..-.....---.|+|+++... ..+....+... .-.+|+||.. |+.|.|+.++.+.+++.. ...
T Consensus 116 dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~-~~~ 194 (346)
T 2q7d_A 116 DRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNA-IQP 194 (346)
T ss_dssp BHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECSBCSSTTCCEEEEECSGGGTTC---C
T ss_pred hHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEecCCCcceeeeeEEecCHHHHHh-cCC
Confidence 88777777776532111111247999998652 12232322211 2468999985 445889999999988874 356
Q ss_pred ceEEeecccCcccCCCceEEEEEEEE
Q psy13386 184 NYICQEYIANPFLIDGLKFDMRVYTL 209 (714)
Q Consensus 184 ~~IVQkYI~nPlLIdGrKFDLRvYVL 209 (714)
.++||+||.. +| .|+|+||+
T Consensus 195 ~~lvQefI~~----~G--~dirv~Vv 214 (346)
T 2q7d_A 195 PCVVQNFINH----NA--VLYKVFVV 214 (346)
T ss_dssp CEEEEECCCC----TT--EEEEEEEE
T ss_pred CEEEEEeeCC----CC--eEEEEEEE
Confidence 7999999974 35 69999996
No 6
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=98.74 E-value=2.8e-07 Score=98.14 Aligned_cols=163 Identities=18% Similarity=0.207 Sum_probs=92.8
Q ss_pred ccceeccCcch------HHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------cCCceEEeecccCcccCC
Q psy13386 131 FPQTWILPRDN------REVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------QNRNYICQEYIANPFLID 198 (714)
Q Consensus 131 ~P~TfiLP~d~------~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------~~~~~IVQkYI~nPlLId 198 (714)
.|+++.+...- .++..+...-.-.+|+||..++.|+||.++++.+++... ....++||+||.
T Consensus 144 ~p~~~~~~~~~~~~~~~~~~~~~~~~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~------ 217 (364)
T 2i87_A 144 QLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN------ 217 (364)
T ss_dssp CCCEEEEEHHHHHHHHHHHHHHHHHHCCSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC------
T ss_pred CCCEEEEechhhcccchhHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc------
Confidence 57787764321 123344433334689999999999999999998887641 357899999996
Q ss_pred CceEEEEEEEEEeeecCCEEEEEeceEEEeccCCCCCCCCCCCCCceeEeeeccccccCCCcccccccCCccChhHHHHH
Q psy13386 199 GLKFDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQW 278 (714)
Q Consensus 199 GrKFDLRvYVLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~~~Nl~d~~~HLTNysInK~s~nf~~dee~Gsk~sLs~l~~~ 278 (714)
|+ ++++.|+... ++ . +...|-+.....-|+ .-.+|. .+. .+....
T Consensus 218 G~--E~~v~vl~~~-~~-~--~~~~~e~~~~~~~~~------------~~~k~~---------~g~-~~~~~p------- 262 (364)
T 2i87_A 218 AR--EIEVAVLGND-YP-E--ATWPGEVVKDVAFYD------------YKSKYK---------DGK-VQLQIP------- 262 (364)
T ss_dssp CE--EEEEEEEESS-SC-E--ECCCEEECCSCCC---------------------------------CCEESS-------
T ss_pred Ce--EEEEEEEcCC-Cc-E--EeeeEEEecCCCcCC------------HHHccc---------CCC-eeEEeC-------
Confidence 53 6777776532 11 1 111111111000011 001110 000 000000
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHHHhhhhHHHhhcccCCCCCCCCCeEEEEEEEEEecCCCCeEEEEeecCCCCCCCCh
Q psy13386 279 FCRMGYDTDLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTE 357 (714)
Q Consensus 279 L~~~G~d~~~lw~~IkdiIikTllAa~p~L~~~y~~~~~~~~~~~~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds~ 357 (714)
... .+.+.++|.++..+++.+. +|..++++||++|.+++|||||||..|+++..+.
T Consensus 263 ---a~l-~~~~~~~i~~~a~~~~~al-------------------g~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s~ 318 (364)
T 2i87_A 263 ---ADL-DEDVQLTLRNMALEAFKAT-------------------DCSGLVRADFFVTEDNQIYINETNAMPGFTAFSM 318 (364)
T ss_dssp ---CSS-CHHHHHHHHHHHHHHHHHT-------------------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTSH
T ss_pred ---CCC-CHHHHHHHHHHHHHHHHHc-------------------CCCcEEEEEEEEecCCCEEEEEEeCCCCCCchhH
Confidence 000 2345556666555544332 3557889999999999999999999999976543
No 7
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=98.70 E-value=3.2e-07 Score=97.11 Aligned_cols=166 Identities=14% Similarity=0.180 Sum_probs=90.2
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhh------ccCCceEEeecccCcccCCCceEEE
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQ------EQNRNYICQEYIANPFLIDGLKFDM 204 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~------~~~~~~IVQkYI~nPlLIdGrKFDL 204 (714)
.|+++.+...-. .....-.-.+|+||..++.|.||.++++.+++.. .....++||+||. |+ ++
T Consensus 147 ~p~~~~~~~~~~---~~~~~lg~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~------G~--E~ 215 (346)
T 3se7_A 147 TPNFWTVTADEK---IPTDQLTYPVFVKPARSGSSFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI------GT--EI 215 (346)
T ss_dssp CCCEEEEETTSC---CCTTTCCSSEEEEESSCCTTTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC------SE--EE
T ss_pred cCCEEEEcCcHH---HHHHhcCCCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC------CE--EE
Confidence 567776643210 1111112458999999999999999999988764 1356899999995 54 67
Q ss_pred EEEEEEeeecCCEEEEEeceEEEeccCCCCCCCCCCCCCceeEeeeccccccCCCcccccccCCccChhHHHHHHHHcCC
Q psy13386 205 RVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQWFCRMGY 284 (714)
Q Consensus 205 RvYVLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~~~Nl~d~~~HLTNysInK~s~nf~~dee~Gsk~sLs~l~~~L~~~G~ 284 (714)
++.|+...-.+ .+ +. ..+.... .. +-.| .+.....|..+. .+.... ...
T Consensus 216 ~v~vl~~~~~~-~~--~~--~~e~~~~-------~~-------~~d~-~q~~~~ky~~~~-~~~~~p----------a~l 264 (346)
T 3se7_A 216 GCAVMGNGPEL-IT--GE--VDQITLS-------HG-------FFKI-HQESTPESGSDN-SAVTVP----------ADI 264 (346)
T ss_dssp EEEEEEETTEE-EE--CC--CEEECCC-----------------------------CGGG-SCEESS----------CCC
T ss_pred EEEEEecCCCe-EE--Ee--eEEEecC-------CC-------CcCc-ccchhccccCCC-eeEEeC----------CCC
Confidence 77776432110 11 00 0011000 00 0000 000001111000 000000 001
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhHHHhhcccCCCCCCCCCeEEEEEEEEEecCCCCeEEEEeecCCCCCCCChh
Q psy13386 285 DTDLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEI 358 (714)
Q Consensus 285 d~~~lw~~IkdiIikTllAa~p~L~~~y~~~~~~~~~~~~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds~l 358 (714)
.+.+.++|.++..+++.+. +|..++++||++|++++|||||||..|+|+..+.+
T Consensus 265 -~~~~~~~i~~~a~~~~~~l-------------------g~~G~~~vD~~~~~~g~~~vlEiN~rPG~t~~s~~ 318 (346)
T 3se7_A 265 -STTSRSLVQDTAKAVYRAL-------------------GCRGLSRVDLFLTEDGKVVLNEVNTFPGMTSYSRY 318 (346)
T ss_dssp -CHHHHHHHHHHHHHHHHHH-------------------TCCEEEEEEEEECTTSCEEEEEEESSCCCSTTCHH
T ss_pred -CHHHHHHHHHHHHHHHHHh-------------------CCceEEEEEEEEeCCCCEEEEEEeCCCCCCcccHH
Confidence 2345556666655544332 35578999999999999999999999999876544
No 8
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=98.69 E-value=7.5e-07 Score=93.91 Aligned_cols=146 Identities=16% Similarity=0.218 Sum_probs=84.0
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhhhc------cCCceEEeecccCcccCCCceEEEEEEEEEeeecCCEEEEEeceEE
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLSQE------QNRNYICQEYIANPFLIDGLKFDMRVYTLITSFDPMRIYVHKDGIV 226 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~~~------~~~~~IVQkYI~nPlLIdGrKFDLRvYVLVTS~dPLrIYlY~eGlv 226 (714)
-.+|+||..++.|+||.++++.+++... ....++||+||. |+ ++++.|+...-. ..+ .--+-+
T Consensus 166 ~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~------G~--E~~v~vl~~~~~-~~~--~~~~ei 234 (343)
T 1e4e_A 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVS------GC--EVGCAVLGNSAA-LVV--GEVDQI 234 (343)
T ss_dssp SCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC------SE--EEEEEEEEETTC-CEE--CCCEEE
T ss_pred CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC------Ce--EEEEEEEeCCCC-eEE--eeeEEE
Confidence 4689999999999999999999887641 357899999995 64 666766643311 111 111111
Q ss_pred EeccCCCCCCCCCCCCCceeEeeeccccccCCCcccccccCCccChhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHhhh
Q psy13386 227 RFATVKYERPKQGNLTNKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKTVLSAHP 306 (714)
Q Consensus 227 RfAt~~Y~~p~~~Nl~d~~~HLTNysInK~s~nf~~dee~Gsk~sLs~l~~~L~~~G~d~~~lw~~IkdiIikTllAa~p 306 (714)
.....-|+- -.+|.-.. ..|....... ... .+.+.++|.++..+++.+.
T Consensus 235 ~~~~~~~~~------------~~k~~~~~---------~~g~~~~~~p-------~~l-~~~~~~~i~~~a~~~~~al-- 283 (343)
T 1e4e_A 235 RLQYGIFRI------------HQEVEPEK---------GSENAVITVP-------ADL-SAEERGRIQETVKKIYKTL-- 283 (343)
T ss_dssp EESSSCCCG------------GGSSSGGG---------CCSSEEECSS-------CSS-CHHHHHHHHHHHHHHHHHT--
T ss_pred eeCCCccCH------------hhcccccC---------CCCCeeEEeC-------CCC-CHHHHHHHHHHHHHHHHHc--
Confidence 111111110 00110000 0010000000 000 2344555665555544332
Q ss_pred hHHHhhcccCCCCCCCCCeEEEEEEEEEecCCCCeEEEEeecCCCCCCCCh
Q psy13386 307 NIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTE 357 (714)
Q Consensus 307 ~L~~~y~~~~~~~~~~~~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds~ 357 (714)
+|..++++||++|.+++|||||||..|+++..+.
T Consensus 284 -----------------g~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s~ 317 (343)
T 1e4e_A 284 -----------------GCRGLARVDMFLQDNGRIVLNEVNTLPGFTSYSR 317 (343)
T ss_dssp -----------------TCEEEEEEEEEECTTCCEEEEEEESSCCCSTTCH
T ss_pred -----------------CCceEEEEEEEEeCCCCEEEEEeeCCCCCCcccH
Confidence 4667899999999999999999999999986553
No 9
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=98.67 E-value=4.9e-07 Score=93.70 Aligned_cols=72 Identities=22% Similarity=0.434 Sum_probs=54.5
Q ss_pred cccceeccCcchHHHHHHHhcCC--cEEEEeCCCCCCC---CcEEEEccchhhhhccCCceEEeecccCcccCCCceEEE
Q psy13386 130 FFPQTWILPRDNREVHAFLTSKK--ATVIVKPDNGSNG---LGISLIRNLRHLSQEQNRNYICQEYIANPFLIDGLKFDM 204 (714)
Q Consensus 130 f~P~TfiLP~d~~~f~~~~k~~k--~~WIvKP~~gsrG---rGI~l~~~l~eI~~~~~~~~IVQkYI~nPlLIdGrKFDL 204 (714)
-+|+|+.+.. .+++..++...+ -.+|+||..|+.| +|+.++.+.+++.. ....+++|+||.. +| +|+
T Consensus 112 ~~P~~~~~~~-~~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~-~~~~~lvqe~i~~----~g--~~~ 183 (324)
T 1z2n_X 112 PIPNSFSVKS-KEEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDD-IHFPCLCQHYINH----NN--KIV 183 (324)
T ss_dssp CCSCEEEESS-HHHHHHHHHTTCSCSSEEEEESBCSSSSGGGEEEEECSGGGGTT-CCSSEEEEECCCC----TT--CEE
T ss_pred CCCCEEEeCC-HHHHHHHHHHcCCCCCEEEeeCCCCCCccceeeEEEeCHHHHhh-cCCCEEEEEccCC----CC--cEE
Confidence 3788888854 445555555432 4689999999999 99999999888764 3568999999963 24 799
Q ss_pred EEEEE
Q psy13386 205 RVYTL 209 (714)
Q Consensus 205 RvYVL 209 (714)
|++|+
T Consensus 184 ~v~v~ 188 (324)
T 1z2n_X 184 KVFCI 188 (324)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99885
No 10
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=98.66 E-value=3.5e-07 Score=99.13 Aligned_cols=164 Identities=16% Similarity=0.196 Sum_probs=84.7
Q ss_pred ccceeccCcc--h-HHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhh------ccCCceEEeecccCcccCCCce
Q psy13386 131 FPQTWILPRD--N-REVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQ------EQNRNYICQEYIANPFLIDGLK 201 (714)
Q Consensus 131 ~P~TfiLP~d--~-~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~------~~~~~~IVQkYI~nPlLIdGrK 201 (714)
.|+++.+... . .++......-.-.+|+||..++.|.||+++++.+++.. .....++||+||. |+
T Consensus 177 vp~~~~~~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~------G~- 249 (383)
T 3k3p_A 177 QVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGISKAENRTDLKQAIALALKYDSRVLIEQGVD------AR- 249 (383)
T ss_dssp BCCEEEEETTSCHHHHHHHHHHHCCSSEEEEECC------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC------SE-
T ss_pred CCCEEEEeCccchhHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC------Ce-
Confidence 5777777542 1 33444444334568999999999999999999988763 2456899999995 65
Q ss_pred EEEEEEEEEeeecCCEEEEEeceEEEeccCCCCCCCCCCCCCceeEeeeccccccCCCcccccccCCccChhHHHHHHHH
Q psy13386 202 FDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQWFCR 281 (714)
Q Consensus 202 FDLRvYVLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~~~Nl~d~~~HLTNysInK~s~nf~~dee~Gsk~sLs~l~~~L~~ 281 (714)
++.+-|+.. ..+.++.-.+ +.....-|+ ... . |... ..+....
T Consensus 250 -E~~v~vl~d--~~~~~~~~~e--i~~~~~~~d------~~~------k---------y~~g-~~~~~~P---------- 292 (383)
T 3k3p_A 250 -EIEVGILGN--TDVKTTLPGE--IVKDVAFYD------YEA------K---------YIDN-KITMAIP---------- 292 (383)
T ss_dssp -EEEEEEEES--SSCEECCCEE--EC---------------------------------------CEESS----------
T ss_pred -EEEEEEEeC--CCeeEEeeEE--EecCCCccc------hhh------c---------ccCC-CeeEEec----------
Confidence 555555532 1122110000 000000010 000 0 0000 0000000
Q ss_pred cCCChhHHHHHHHHHHHHHHHHhhhhHHHhhcccCCCCCCCCCeEEEEEEEEEecCCCCeEEEEeecCCCCCCCChh
Q psy13386 282 MGYDTDLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEI 358 (714)
Q Consensus 282 ~G~d~~~lw~~IkdiIikTllAa~p~L~~~y~~~~~~~~~~~~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds~l 358 (714)
... .+.+.++|.++..+++.+. +|-.+.++||++|.+++|||||||..|+|+..+-+
T Consensus 293 a~l-~~~~~~~i~~~a~~~~~aL-------------------g~~G~~~vDf~~~~~g~~~vlEINtrPG~t~~S~~ 349 (383)
T 3k3p_A 293 AEI-DPVIVEKMRDYAATAFRTL-------------------GCCGLSRCDFFLTEDGKVYLNELNTMPGFTQWSMY 349 (383)
T ss_dssp CCC-CHHHHHHHHHHHHHHHHHT-------------------TCCEEEEEEEEECTTCCEEEEEEESSCCCC--CHH
T ss_pred CCC-CHHHHHHHHHHHHHHHHHc-------------------CCceEEEEEEEEECCCCEEEEEeeCCCCCCcccHH
Confidence 001 2345555655555443332 46678899999999999999999999999876544
No 11
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=98.64 E-value=7.6e-07 Score=95.20 Aligned_cols=162 Identities=19% Similarity=0.276 Sum_probs=92.0
Q ss_pred ccceeccCc------chHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhh------ccCCceEEeecccCcccCC
Q psy13386 131 FPQTWILPR------DNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQ------EQNRNYICQEYIANPFLID 198 (714)
Q Consensus 131 ~P~TfiLP~------d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~------~~~~~~IVQkYI~nPlLId 198 (714)
.|+++.+.. +..++...+ .-.+|+||..++.|.||.++++.+++.. .....++||+||.
T Consensus 155 ~p~~~~~~~~~~~~~~~~~~~~~l---g~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~------ 225 (364)
T 3i12_A 155 IAPFITLTRTNRHAFSFAEVESRL---GLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK------ 225 (364)
T ss_dssp BCCEEEEETTTGGGCCHHHHHHHH---CSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC------
T ss_pred CCCEEEEEccccchhhHHHHHHhc---CCCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC------
Confidence 566666543 233333333 2358999999999999999999988763 1356899999995
Q ss_pred CceEEEEEEEEEeeecCCEEEEEeceEEEeccCCCCCCCCCCCCCceeEeeeccccccCCCcccccccCCccChhHHHHH
Q psy13386 199 GLKFDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQW 278 (714)
Q Consensus 199 GrKFDLRvYVLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~~~Nl~d~~~HLTNysInK~s~nf~~dee~Gsk~sLs~l~~~ 278 (714)
|+ ++.+-|+... .+ .+ ..-|-+.....-|+. .. .|......+....
T Consensus 226 G~--E~~v~vl~~~-~~-~~--~~~~ei~~~~~~~~~------~~---------------ky~~~~~~~~~~P------- 271 (364)
T 3i12_A 226 GR--EIECAVLGND-NP-QA--STCGEIVLNSEFYAY------DT---------------KYIDDNGAQVVVP------- 271 (364)
T ss_dssp SE--EEEEEEEESS-SC-EE--EEEEEEECCTTCC--------TT---------------TTSGGGGCEEESS-------
T ss_pred Ce--EEEEEEEeCC-Cc-eE--eeeEEEecCCCccCH------HH---------------cccCCCceEEEeC-------
Confidence 63 6666665332 11 11 111222211111110 00 0100000000000
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHHHhhhhHHHhhcccCCCCCCCCCeEEEEEEEEEecCCCCeEEEEeecCCCCCCCChh
Q psy13386 279 FCRMGYDTDLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEI 358 (714)
Q Consensus 279 L~~~G~d~~~lw~~IkdiIikTllAa~p~L~~~y~~~~~~~~~~~~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds~l 358 (714)
... .+.+.++|.++..+++.+. +|..+.++||++|.+++|||||||..|+|+..+.+
T Consensus 272 ---a~l-~~~~~~~i~~~a~~~~~al-------------------g~~G~~~vD~~~~~~g~~~vlEiN~~Pg~t~~s~~ 328 (364)
T 3i12_A 272 ---AQI-PSEVNDKIRAIAIQAYQTL-------------------GCAGMARVDVFLTADNEVVINEINTLPGFTNISMY 328 (364)
T ss_dssp ---CSS-CHHHHHHHHHHHHHHHHHT-------------------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred ---CCC-CHHHHHHHHHHHHHHHHHh-------------------CCceEEEEEEEEecCCCEEEEEeeCCCCCCCCCHH
Confidence 001 2344555666555444332 46678899999999999999999999999876544
No 12
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=98.61 E-value=7.3e-07 Score=94.54 Aligned_cols=103 Identities=23% Similarity=0.389 Sum_probs=62.2
Q ss_pred CceecccCCCCcchhhHH-HHHHHHHHHHHCCCCCCcccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEcc
Q psy13386 95 FQRTNHFPLIMELCRKNL-LAKNLNQMKIQYPNDYNFFPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRN 173 (714)
Q Consensus 95 ~QkVNHFPG~~~LtRKd~-LarnL~rm~k~~p~~y~f~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~ 173 (714)
.-.+|..-....-..|-. +++.+..+.+.-...+...|.||. +. ..+ .+....-..|+||..|++|+|+.++++
T Consensus 99 vpviN~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~~-~~-~~~---~~~~~g~PvVvK~~~Gs~G~GV~lv~~ 173 (309)
T 1i7n_A 99 LPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYY-PN-HRE---MLTLPTFPVVVKIGHAHSGMGKVKVEN 173 (309)
T ss_dssp CCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEE-SS-GGG---GSSCCCSSEEEEESSCSTTTTEEEECS
T ss_pred ccccCCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEEee-CC-hhh---hhhccCCCEEEEeCCCCceeCeEEECC
Confidence 445555333333345522 233333333333334455566664 43 222 222223467999999999999999999
Q ss_pred chhhhh------ccCCceEEeecccCcccCCCceEEEEEEEE
Q psy13386 174 LRHLSQ------EQNRNYICQEYIANPFLIDGLKFDMRVYTL 209 (714)
Q Consensus 174 l~eI~~------~~~~~~IVQkYI~nPlLIdGrKFDLRvYVL 209 (714)
.+++.. .....+++|+||. ..+|+|++|+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~vQefI~-------~g~DiRv~Vv 208 (309)
T 1i7n_A 174 HYDFQDIASVVALTQTYATAEPFID-------AKYDIRVQKI 208 (309)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCC-------EEEEEEEEEE
T ss_pred HHHHHHHHHHHhccCCeEEEEeecC-------CCceEEEEEE
Confidence 887653 1345677999996 2599999997
No 13
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=98.60 E-value=6.3e-07 Score=97.01 Aligned_cols=162 Identities=20% Similarity=0.238 Sum_probs=90.1
Q ss_pred ccceeccCc------chHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhh------ccCCceEEeecccCcccCC
Q psy13386 131 FPQTWILPR------DNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQ------EQNRNYICQEYIANPFLID 198 (714)
Q Consensus 131 ~P~TfiLP~------d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~------~~~~~~IVQkYI~nPlLId 198 (714)
.|+++.+.. +..++...+ .-.+|+||..++.|+||.++++.+++.. .....++||+||.
T Consensus 174 ~p~~~~~~~~~~~~~~~~~~~~~l---g~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~------ 244 (386)
T 3e5n_A 174 VAPFVCFDRHTAAHADVDTLIAQL---GLPLFVKPANQGSSVGVSQVRTADAFAAALALALAYDHKVLVEAAVA------ 244 (386)
T ss_dssp BCCEEEEEHHHHTTCCHHHHHHHH---CSSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC------
T ss_pred CCCEEEEeCcccchhhHHHHHHhc---CCCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC------
Confidence 567766643 222333322 2358999999999999999999988764 1356899999995
Q ss_pred CceEEEEEEEEEeeecCCEEEEEeceEEEeccCCCCCCCCCCCCCceeEeeeccccccCCCcccccccCCccChhHHHHH
Q psy13386 199 GLKFDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQW 278 (714)
Q Consensus 199 GrKFDLRvYVLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~~~Nl~d~~~HLTNysInK~s~nf~~dee~Gsk~sLs~l~~~ 278 (714)
| -++.+-|+... .+.+.. -|-+.....-|+ ....+ ......+....
T Consensus 245 G--~E~~v~vl~~~--~~~~~~--~gei~~~~~~~d------~~~ky---------------~~~~~~~~~~P------- 290 (386)
T 3e5n_A 245 G--REIECAVLGNA--VPHASV--CGEVVVHDAFYS------YATKY---------------ISEHGAEIVIP------- 290 (386)
T ss_dssp S--EEEEEEEECSS--SCEEEE--EEEECC--------------------------------------CEESS-------
T ss_pred C--eEEEEEEEeCC--CceEEE--eEEEEeCCcccc------hhccc---------------CCCCCeEEEEC-------
Confidence 5 35566555322 122211 111111100011 00000 00000000000
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHHHhhhhHHHhhcccCCCCCCCCCeEEEEEEEEEecCCCCeEEEEeecCCCCCCCChh
Q psy13386 279 FCRMGYDTDLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEI 358 (714)
Q Consensus 279 L~~~G~d~~~lw~~IkdiIikTllAa~p~L~~~y~~~~~~~~~~~~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds~l 358 (714)
... .+.+.++|.++..+++.+. +|..+.++||++|.+++||+||||..|+|+..+-+
T Consensus 291 ---a~l-~~~~~~~i~~~a~~~~~aL-------------------g~~G~~~vDf~~~~dg~~~vlEiN~~PG~t~~S~~ 347 (386)
T 3e5n_A 291 ---ADI-DAQTQQRIQQIAVQAYQAL-------------------GCAGMARVDVFLCADGRIVINEVNTLPGFTRISVY 347 (386)
T ss_dssp ---CSS-CHHHHHHHHHHHHHHHHHH-------------------TCCSEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred ---CCC-CHHHHHHHHHHHHHHHHHh-------------------CCccEEEEEEEEECCCcEEEEEeECCCCCCccCHH
Confidence 001 2345556666655544332 35567899999999999999999999999877654
No 14
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=98.59 E-value=9.7e-07 Score=95.25 Aligned_cols=142 Identities=13% Similarity=0.161 Sum_probs=82.2
Q ss_pred cE-EEEeCCCCCCCCcEEEEccchhhhh------ccCCceEEeecccCcccCCCceEEEEEEEEEeeecCCEEEEEeceE
Q psy13386 153 AT-VIVKPDNGSNGLGISLIRNLRHLSQ------EQNRNYICQEYIANPFLIDGLKFDMRVYTLITSFDPMRIYVHKDGI 225 (714)
Q Consensus 153 ~~-WIvKP~~gsrGrGI~l~~~l~eI~~------~~~~~~IVQkYI~nPlLIdGrKFDLRvYVLVTS~dPLrIYlY~eGl 225 (714)
-. +|+||..++.|.||.++++.+++.. .....++||+||. |+ ++++-|+... . +.+ .--|-
T Consensus 180 ~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~------G~--E~~v~vl~~~-~-~~~--~~~~e 247 (372)
T 3tqt_A 180 TSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR------GR--EIECAVLGNG-A-PKA--SLPGE 247 (372)
T ss_dssp --CEEEEESSCCSGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC------SE--EEEEEEEESS-S-CEE--CCCEE
T ss_pred CCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC------CE--EEEEEEEeCC-C-ceE--eeeEE
Confidence 45 8999999999999999999988763 1356899999995 64 5566565432 1 111 11111
Q ss_pred EEeccCCCCCCCCCCCCCc-eeEeeeccccccCCCcccccccCCccChhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHh
Q psy13386 226 VRFATVKYERPKQGNLTNK-YMHLTNYSVNKHSISFIHDEEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKTVLSA 304 (714)
Q Consensus 226 vRfAt~~Y~~p~~~Nl~d~-~~HLTNysInK~s~nf~~dee~Gsk~sLs~l~~~L~~~G~d~~~lw~~IkdiIikTllAa 304 (714)
+.....-|+-. .+...+. ..|.+ . ... .+.+.++|.++..+++.+.
T Consensus 248 i~~~~~~~d~~-~ky~~g~~~~~~~---------------------P----------a~l-~~~~~~~i~~~a~~~~~aL 294 (372)
T 3tqt_A 248 IIPHHDYYSYD-AKYLDPNGATTTT---------------------S----------VDL-SESVTKQIQQIAIDAFKMV 294 (372)
T ss_dssp EECC----------------CEEES---------------------C----------CCC-CHHHHHHHHHHHHHHHHHT
T ss_pred EecCCCccchh-hcccCCCceEEEe---------------------C----------CCC-CHHHHHHHHHHHHHHHHHh
Confidence 11111111100 0000000 00000 0 001 2345566666655544332
Q ss_pred hhhHHHhhcccCCCCCCCCCeEEEEEEEEEecCCCCeEEEEeecCCCCCCCChh
Q psy13386 305 HPNIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEI 358 (714)
Q Consensus 305 ~p~L~~~y~~~~~~~~~~~~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds~l 358 (714)
+|..+.++||++|++++|||||||..|+|+..+-+
T Consensus 295 -------------------g~~G~~rvDf~~~~dg~~~vlEINt~PG~t~~S~~ 329 (372)
T 3tqt_A 295 -------------------HCSGMARVDFFVTPNNKVLVNEINTIPGFTNISMY 329 (372)
T ss_dssp -------------------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred -------------------CCccEEEEEEEEeCCCcEEEEEEECCCCcCccCHH
Confidence 46678899999999999999999999999977654
No 15
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=98.58 E-value=1.3e-06 Score=96.23 Aligned_cols=71 Identities=23% Similarity=0.443 Sum_probs=49.8
Q ss_pred CCCcccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhh------ccCCceEEeecccCcccCCCc
Q psy13386 127 DYNFFPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQ------EQNRNYICQEYIANPFLIDGL 200 (714)
Q Consensus 127 ~y~f~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~------~~~~~~IVQkYI~nPlLIdGr 200 (714)
.+...|.||. +...+ .+....--.|+||..|++|+|+.++++.+++.. .....+++|+||. .
T Consensus 244 ~iP~t~~t~~-~~~~~----~i~~~g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~-------~ 311 (422)
T 1pk8_A 244 EFPLIDQTFY-PNHKE----MLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFID-------A 311 (422)
T ss_dssp TSCBCCCEEE-SSGGG----CCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCC-------E
T ss_pred CCCCCceEec-Cchhh----hhhccCCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhccCceEEEEeecC-------C
Confidence 3444566664 44222 222222467999999999999999999887653 1345677999996 2
Q ss_pred eEEEEEEEE
Q psy13386 201 KFDMRVYTL 209 (714)
Q Consensus 201 KFDLRvYVL 209 (714)
.+|||++|+
T Consensus 312 g~DIRv~VV 320 (422)
T 1pk8_A 312 KYDVRVQKI 320 (422)
T ss_dssp EEEEEEEEE
T ss_pred CceEEEEEE
Confidence 599999997
No 16
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=98.54 E-value=6.7e-07 Score=96.15 Aligned_cols=104 Identities=17% Similarity=0.363 Sum_probs=62.5
Q ss_pred cCceecccCCCCcchhhHH-HHHHHHHHHHHCCCCCCcccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEc
Q psy13386 94 RFQRTNHFPLIMELCRKNL-LAKNLNQMKIQYPNDYNFFPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIR 172 (714)
Q Consensus 94 ~~QkVNHFPG~~~LtRKd~-LarnL~rm~k~~p~~y~f~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~ 172 (714)
..-.+|..-....-+.|-. +++.+..+.+.-...+...|.||. +.. .+ .+....-..|+||..|++|+|+.+++
T Consensus 115 GvpviN~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~~-~~~-~~---~~~~~g~PvVvK~~~Gs~G~GV~lve 189 (344)
T 2p0a_A 115 GLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFF-PNH-KP---MVTAPHFPVVVKLGHAHAGMGKIKVE 189 (344)
T ss_dssp TCCEESCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCEEE-SSS-TT---CCCCSSSSEEEEESSCCTTTTEEEEC
T ss_pred CceecCCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEEec-Cch-hh---hhhccCCCEEEEeCCCCceeCeEEEC
Confidence 3445665444444455622 233333333333233444566664 432 11 12222246799999999999999999
Q ss_pred cchhhhh------ccCCceEEeecccCcccCCCceEEEEEEEE
Q psy13386 173 NLRHLSQ------EQNRNYICQEYIANPFLIDGLKFDMRVYTL 209 (714)
Q Consensus 173 ~l~eI~~------~~~~~~IVQkYI~nPlLIdGrKFDLRvYVL 209 (714)
+.+++.. .....+++|+||. ..+|+|++|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~vQefI~-------~g~DiRv~VV 225 (344)
T 2p0a_A 190 NQLDFQDITSVVAMAKTYATTEAFID-------SKYDIRIQKI 225 (344)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEECCC-------EEEEEEEEEE
T ss_pred CHHHHHHHHHHHhccCCeEEEEeccC-------CCccEEEEEE
Confidence 9887653 1345677999996 2599999997
No 17
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.51 E-value=3e-06 Score=90.95 Aligned_cols=165 Identities=18% Similarity=0.226 Sum_probs=91.0
Q ss_pred ccceeccCcc------hHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhh------ccCCceEEeecccCcccCC
Q psy13386 131 FPQTWILPRD------NREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQ------EQNRNYICQEYIANPFLID 198 (714)
Q Consensus 131 ~P~TfiLP~d------~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~------~~~~~~IVQkYI~nPlLId 198 (714)
.|+++.+... ..++...+ .-.+|+||..++.|+||.++++.+++.. .....++||+||.
T Consensus 150 ~p~~~~~~~~~~~~~~~~~~~~~~---g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~------ 220 (377)
T 1ehi_A 150 NTKYIVVDPESANNWSWDKIVAEL---GNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN------ 220 (377)
T ss_dssp CCCEEEECTTGGGGCCHHHHHHHH---CSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC------
T ss_pred CCCEEEEeccccchHHHHHHHHhc---CCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC------
Confidence 5777776542 22332222 2458999999999999999999988764 1356899999995
Q ss_pred C-ceEEEEEEEEEeeecCCEEEEEeceEEEeccCCCCCCCCCCCCCceeEeeeccccccCCCcccccccCCccChhHHHH
Q psy13386 199 G-LKFDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQ 277 (714)
Q Consensus 199 G-rKFDLRvYVLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~~~Nl~d~~~HLTNysInK~s~nf~~dee~Gsk~sLs~l~~ 277 (714)
| + ++++.|+... ++ ++. .-|-+.... .+. ...+ ..|. ..|......+....
T Consensus 221 G~~--E~~v~vl~~~-~~-~~~--~~~ei~~~~--~~~--~~~~-------~d~~-----~k~~~g~~~~~~~P------ 272 (377)
T 1ehi_A 221 GAR--ELEVGVIGND-QP-LVS--EIGAHTVPN--QGS--GDGW-------YDYN-----NKFVDNSAVHFQIP------ 272 (377)
T ss_dssp CSC--EEEEEEEESS-SC-EEE--EEEEEECTT--SSS--SSCC-------CCHH-----HHTTCCTTCEEESS------
T ss_pred CCc--eEEEEEEcCC-Cc-EEE--eeEEEEecC--CCC--cCce-------eCHH-----hcccCCCCeeEEeC------
Confidence 4 4 5666665422 11 111 111111110 000 0000 0000 00000000000000
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHHHHhhhhHHHhhcccCCCCCCCCCeEEEEEEEEEecCCCCeEEEEeecCCCCCCCC
Q psy13386 278 WFCRMGYDTDLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDT 356 (714)
Q Consensus 278 ~L~~~G~d~~~lw~~IkdiIikTllAa~p~L~~~y~~~~~~~~~~~~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds 356 (714)
... .+.+.++|.++..+++.+. +|..+.++||++|.+++|||||||..|+++..+
T Consensus 273 ----a~l-~~~~~~~i~~~a~~~~~al-------------------g~~G~~~vD~~~~~~g~~~vlEiN~rpg~t~~s 327 (377)
T 1ehi_A 273 ----AQL-SPEVTKEVKQMALDAYKVL-------------------NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMS 327 (377)
T ss_dssp ----CCC-CHHHHHHHHHHHHHHHHHT-------------------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTC
T ss_pred ----CCC-CHHHHHHHHHHHHHHHHHc-------------------CCCcEEEEEEEEeCCCCEEEEEEeCCCCCCccc
Confidence 001 2345556666655544331 355789999999999999999999999987654
No 18
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=98.49 E-value=1.1e-07 Score=95.59 Aligned_cols=72 Identities=21% Similarity=0.294 Sum_probs=50.1
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc-------c---CCceEEeecccCcccCCCc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE-------Q---NRNYICQEYIANPFLIDGL 200 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~-------~---~~~~IVQkYI~nPlLIdGr 200 (714)
.|+|+.+.. .+++..+.+.....+|+||..++.|+|++++++.+++... . ...++||+||+. .
T Consensus 103 ~p~~~~~~~-~~~~~~~~~~~~~p~vvKp~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe~i~~------~ 175 (280)
T 1uc8_A 103 QPKTALATD-REEALRLMEAFGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEK------P 175 (280)
T ss_dssp CCCEEEESS-HHHHHHHHHHHCSSEEEECSBCCBCSHHHHHHHHHC------------CTTTTCEEEEECCCC------S
T ss_pred CCCeEeeCC-HHHHHHHHHHhCCCEEEEECCCCCcccceecccccccchhhhhHhhhcccCCCcEEEEeccCC------C
Confidence 688887744 4445554443334689999999999999988877665421 1 468999999963 4
Q ss_pred eEEEEEEEE
Q psy13386 201 KFDMRVYTL 209 (714)
Q Consensus 201 KFDLRvYVL 209 (714)
.+++|++++
T Consensus 176 ~~e~~v~v~ 184 (280)
T 1uc8_A 176 GRDIRVFVV 184 (280)
T ss_dssp SCCEEEEEE
T ss_pred CceEEEEEE
Confidence 578999885
No 19
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=98.49 E-value=8.4e-07 Score=91.26 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=44.2
Q ss_pred ccceeccCc--chHH-HHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------cCCceEEeecccCcccCCCce
Q psy13386 131 FPQTWILPR--DNRE-VHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------QNRNYICQEYIANPFLIDGLK 201 (714)
Q Consensus 131 ~P~TfiLP~--d~~~-f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------~~~~~IVQkYI~nPlLIdGrK 201 (714)
.|+|+.+.. +... +...+ .-.+|+||..++.|+||+++++.+++... ....++||+||. |
T Consensus 112 ~p~~~~~~~~~~~~~~~~~~~---~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~------G-- 180 (307)
T 3r5x_A 112 TPDWIELTKMEDLNFDELDKL---GFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEWDSEVVIEKYIK------G-- 180 (307)
T ss_dssp CCCEEEEESSSCCCHHHHHHH---CSSEEEEECC----CCCEEECSHHHHHHHHHHHHHHCSEEEEEECCC------S--
T ss_pred CCCEEEEeChhhhhHHHHHhc---CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCEEEECCcC------C--
Confidence 677777643 2221 33322 23589999999999999999998887631 357899999996 5
Q ss_pred EEEEEEEE
Q psy13386 202 FDMRVYTL 209 (714)
Q Consensus 202 FDLRvYVL 209 (714)
-++++.++
T Consensus 181 ~e~~v~v~ 188 (307)
T 3r5x_A 181 EEITCSIF 188 (307)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 37777763
No 20
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=98.48 E-value=1.7e-06 Score=90.81 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=39.5
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhhhc------cCCceEEeecccCcccCCC-ceEEEEEEEEE
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLSQE------QNRNYICQEYIANPFLIDG-LKFDMRVYTLI 210 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~~~------~~~~~IVQkYI~nPlLIdG-rKFDLRvYVLV 210 (714)
-.+|+||..++.|.|+.++++.+++... ....++||+||. | + ++++.|+.
T Consensus 151 ~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~------G~~--E~~v~vl~ 207 (322)
T 2fb9_A 151 PPFFVKPANTGSSVGISRVERFQDLEAALALAFRYDEKAVVEKALS------PVR--ELEVGVLG 207 (322)
T ss_dssp SCEEEEETTCCTTTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS------SCE--EEEEEEES
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC------CCe--eEEEEEEe
Confidence 4689999999999999999998887641 357899999996 4 3 56666653
No 21
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=98.36 E-value=3.1e-06 Score=91.09 Aligned_cols=142 Identities=23% Similarity=0.342 Sum_probs=82.9
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhhh------ccCCceEEeecccCcccCCCceEEEEEEEEEeeecCCEEEEEeceEE
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLSQ------EQNRNYICQEYIANPFLIDGLKFDMRVYTLITSFDPMRIYVHKDGIV 226 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~~------~~~~~~IVQkYI~nPlLIdGrKFDLRvYVLVTS~dPLrIYlY~eGlv 226 (714)
-.+|+||..++.|.||.++++.+++.. .....++||+||. |+ ++++-|+... ...+.++--|-+
T Consensus 189 ~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~------G~--E~~v~vl~~~--~~~~~~~~~~ei 258 (373)
T 3lwb_A 189 LPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS------GR--ELECGVLEMP--DGTLEASTLGEI 258 (373)
T ss_dssp SCEEEEESBCSTTTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE------EE--EEEEEEEECT--TSCEEECCCEEE
T ss_pred CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC------Ce--EEEEEEEECC--CCceEEeeeeEE
Confidence 458999999999999999999998764 1357899999996 54 5666665322 121111112222
Q ss_pred Eec--cC----CCCCCCCCCCCCceeEeeeccccccCCCcccccccCCccChhHHHHHHHHcCCChhHHHHHHHHHHHHH
Q psy13386 227 RFA--TV----KYERPKQGNLTNKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKT 300 (714)
Q Consensus 227 RfA--t~----~Y~~p~~~Nl~d~~~HLTNysInK~s~nf~~dee~Gsk~sLs~l~~~L~~~G~d~~~lw~~IkdiIikT 300 (714)
... .. -|+ .-.+| ..+ +...... .. -.+.+.++|.++..++
T Consensus 259 ~~~~~~~~~~~~~d------------~~~ky---------~~~---~~~~~~P--------a~-l~~~~~~~i~~~a~~~ 305 (373)
T 3lwb_A 259 RVAGVRGREDSFYD------------FATKY---------LDD---AAELDVP--------AK-VDDQVAEAIRQLAIRA 305 (373)
T ss_dssp ECCSTTCSEESSSC------------HHHHH---------TCT---TCEEESS--------CC-CCHHHHHHHHHHHHHH
T ss_pred EccCCCCccccccc------------hhhcc---------cCC---CceEEeC--------CC-CCHHHHHHHHHHHHHH
Confidence 221 00 000 00000 000 0000000 00 1245556666666554
Q ss_pred HHHhhhhHHHhhcccCCCCCCCCCeEEEEEEEEEecCCCCeEEEEeecCCCCCCCCh
Q psy13386 301 VLSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTE 357 (714)
Q Consensus 301 llAa~p~L~~~y~~~~~~~~~~~~cFELlGfDfLLD~~lKPWLLEVN~sPSl~tds~ 357 (714)
+.+. +|..+.++||++|+++. ||+|||..|+|+..+-
T Consensus 306 ~~aL-------------------g~~G~~~vDf~~~~dg~-~vlEIN~~PG~t~~S~ 342 (373)
T 3lwb_A 306 FAAI-------------------DCRGLARVDFFLTDDGP-VINEINTMPGFTTISM 342 (373)
T ss_dssp HHHT-------------------TCCSEEEEEEEEETTEE-EEEEEESSCCCSTTSH
T ss_pred HHHh-------------------CCccEEEEEEEEECCCC-EEEEecCCCCCCcccH
Confidence 4332 35567899999999999 9999999999987654
No 22
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=98.34 E-value=1e-05 Score=86.65 Aligned_cols=61 Identities=10% Similarity=0.269 Sum_probs=44.1
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCC-CCcEEEEccchhhhhc----cCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSN-GLGISLIRNLRHLSQE----QNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsr-GrGI~l~~~l~eI~~~----~~~~~IVQkYI~ 192 (714)
.|+++.+.+ .+++..+.+.-.-.+|+||..+.. |+|++++++.+++... ....++||+||.
T Consensus 127 ~p~~~~~~~-~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~ 192 (389)
T 3q2o_A 127 VATYRLVQN-QEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLANAAECILEKWVP 192 (389)
T ss_dssp CCCEEEESS-HHHHHHHHHHHCSSEEEEESSCCSSSCCEEEESSGGGHHHHHHHHHHSCEEEEECCC
T ss_pred CCCeEEECC-HHHHHHHHHhcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcCCCCEEEEeccc
Confidence 567766643 445555544333458999999865 8999999999887642 346899999996
No 23
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=98.34 E-value=1.5e-06 Score=89.73 Aligned_cols=46 Identities=28% Similarity=0.422 Sum_probs=32.8
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhhhc-----------cCCceEEeecccCcccCCCceEEE
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLSQE-----------QNRNYICQEYIANPFLIDGLKFDM 204 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~~~-----------~~~~~IVQkYI~nPlLIdGrKFDL 204 (714)
..+|+||..++.|+||+++++.+++... ....++||+||+ |..+++
T Consensus 127 ~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~------G~e~~~ 183 (334)
T 2r85_A 127 KPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVL------GVPVYP 183 (334)
T ss_dssp SCEEEEECC----TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCC------CEEEEE
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccC------CceeEE
Confidence 4689999999999999999998876531 126899999996 666653
No 24
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=98.34 E-value=7.8e-06 Score=86.97 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=46.2
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCC-CCCcEEEEccchhhhhccCCceEEeecccCcccCCCceEEEEEEEE
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGS-NGLGISLIRNLRHLSQEQNRNYICQEYIANPFLIDGLKFDMRVYTL 209 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gs-rGrGI~l~~~l~eI~~~~~~~~IVQkYI~nPlLIdGrKFDLRvYVL 209 (714)
.|+++.+.. .++ +.+...-.+|+||..++ .|+|++++++.+++.......+++|+||+. | .++++.++
T Consensus 115 ~p~~~~~~~-~~~---~~~~~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~~~~lvEe~i~~-----g--~e~sv~~~ 183 (380)
T 3ax6_A 115 VPEYKLVKD-LES---DVREFGFPVVQKARKGGYDGRGVFIIKNEKDLENAIKGETYLEEFVEI-----E--KELAVMVA 183 (380)
T ss_dssp CCCEEECSS-HHH---HHHTTCSSEEEEESCCC-----EEEECSGGGGGGCCCSSEEEEECCCE-----E--EEEEEEEE
T ss_pred CCCeEEeCC-HHH---HHHhcCCCEEEEecCCCCCCCCeEEECCHHHHHHHhcCCEEEEeccCC-----C--eeEEEEEE
Confidence 577776643 333 33333346899999999 999999999999887433378999999972 3 47777776
Q ss_pred E
Q psy13386 210 I 210 (714)
Q Consensus 210 V 210 (714)
.
T Consensus 184 ~ 184 (380)
T 3ax6_A 184 R 184 (380)
T ss_dssp E
T ss_pred E
Confidence 4
No 25
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=98.32 E-value=1.3e-05 Score=86.81 Aligned_cols=62 Identities=10% Similarity=0.134 Sum_probs=45.9
Q ss_pred ccceeccC-cchHHHHHHHhcCCcEEEEeCCCCC-CCCcEEEEccchhhhh----ccCCceEEeeccc
Q psy13386 131 FPQTWILP-RDNREVHAFLTSKKATVIVKPDNGS-NGLGISLIRNLRHLSQ----EQNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP-~d~~~f~~~~k~~k~~WIvKP~~gs-rGrGI~l~~~l~eI~~----~~~~~~IVQkYI~ 192 (714)
.|+++.+. .+.+++..+...-.-.+|+||..++ .|+|++++++.+++.. .....+|||+||.
T Consensus 138 ~p~~~~~~~~~~~~~~~~~~~~g~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~ 205 (403)
T 3k5i_A 138 MAEHRELVENTPAELAKVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEALKDRPLYAEKWAY 205 (403)
T ss_dssp BCCEEEESSCCHHHHHHHHHHHCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHTTTSCEEEEECCC
T ss_pred CCCEEEEcCCCHHHHHHHHHHhCCCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhcCCCcEEEecCCC
Confidence 67777765 1456666555443346899998886 9999999999988764 2357899999996
No 26
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=98.28 E-value=4.6e-06 Score=89.69 Aligned_cols=61 Identities=18% Similarity=0.324 Sum_probs=42.8
Q ss_pred ccceeccCcc-hHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------cCCceEEeeccc
Q psy13386 131 FPQTWILPRD-NREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------QNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d-~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------~~~~~IVQkYI~ 192 (714)
.|+++.+... ..+..+ ...-.-.+|+||..++.|.|+.++++.+++... ....++||+||.
T Consensus 164 ~p~~~~~~~~~~~~~~~-~~~lg~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~ 231 (367)
T 2pvp_A 164 TLDYVLLNEKNRANALD-LMNFNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQ 231 (367)
T ss_dssp CCCCEEECTTTGGGHHH-HCCSCSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCT
T ss_pred CCCEEEEeCCchHHHHH-HhccCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 5666666432 113333 333335689999999999999999998887631 356899999995
No 27
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=98.18 E-value=2.7e-05 Score=84.85 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=51.5
Q ss_pred ccceec-cCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccCcccC
Q psy13386 131 FPQTWI-LPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIANPFLI 197 (714)
Q Consensus 131 ~P~Tfi-LP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~nPlLI 197 (714)
.|+++. .-.+.+++..+.+.-.-.+|+||..|+.|+|++++++.+++... ....++||+||..+
T Consensus 134 ~p~~~~~~~~~~~e~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~--- 210 (446)
T 3ouz_A 134 VIPGSDGALAGAEAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNP--- 210 (446)
T ss_dssp BCSBCSSSCCSHHHHHHHHHHHCSSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSC---
T ss_pred cCCCcccCCCCHHHHHHHHHHhCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC---
Confidence 566652 33456666665554444689999999999999999999887631 16789999999743
Q ss_pred CCceEEEEEEEEE
Q psy13386 198 DGLKFDMRVYTLI 210 (714)
Q Consensus 198 dGrKFDLRvYVLV 210 (714)
-++.+.++.
T Consensus 211 ----~e~~v~v~~ 219 (446)
T 3ouz_A 211 ----RHIEVQVIG 219 (446)
T ss_dssp ----EEEEEEEEE
T ss_pred ----cEEEEEEEE
Confidence 256666653
No 28
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=98.18 E-value=2.9e-05 Score=82.90 Aligned_cols=71 Identities=20% Similarity=0.366 Sum_probs=48.5
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc--------cCCceEEeecccCcccCCCceE
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE--------QNRNYICQEYIANPFLIDGLKF 202 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~--------~~~~~IVQkYI~nPlLIdGrKF 202 (714)
.|+++.+. +.+++..+.+...-.+|+||..|+.|+|++++++.+++... ....+++|+||+ |.-|
T Consensus 124 ~p~~~~~~-~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~------g~e~ 196 (403)
T 4dim_A 124 TARHFVVR-NENELKNALENLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIE------GYEF 196 (403)
T ss_dssp CCCEECCC-SHHHHHHHHHTSCSSEEEECSCC-----CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCC------SEEE
T ss_pred CCCEEEeC-CHHHHHHHHhcCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccC------CcEE
Confidence 57777664 45666666665555689999999999999999999887631 246799999996 5667
Q ss_pred EEEEEE
Q psy13386 203 DMRVYT 208 (714)
Q Consensus 203 DLRvYV 208 (714)
++.+++
T Consensus 197 sv~~~~ 202 (403)
T 4dim_A 197 GAQAFV 202 (403)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 776654
No 29
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.17 E-value=2.3e-05 Score=85.39 Aligned_cols=72 Identities=22% Similarity=0.337 Sum_probs=50.0
Q ss_pred cccee--ccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccCccc
Q psy13386 131 FPQTW--ILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIANPFL 196 (714)
Q Consensus 131 ~P~Tf--iLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~nPlL 196 (714)
.|+++ .+ .+.++...+.+...-.+|+||..++.|+|++++++.+++... ....++||+||+.+
T Consensus 129 ~p~~~~~~~-~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-- 205 (451)
T 1ulz_A 129 VVPGSDGVL-KSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENP-- 205 (451)
T ss_dssp BCCBCSSSC-CCHHHHHHHHHHHCSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSC--
T ss_pred CCCCccccc-CCHHHHHHHHHHcCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCC--
Confidence 45655 33 345555555544334689999999999999999998877531 25689999999732
Q ss_pred CCCceEEEEEEEEE
Q psy13386 197 IDGLKFDMRVYTLI 210 (714)
Q Consensus 197 IdGrKFDLRvYVLV 210 (714)
-++++.++.
T Consensus 206 -----~e~~v~v~~ 214 (451)
T 1ulz_A 206 -----KHIEYQVLG 214 (451)
T ss_dssp -----EEEEEEEEE
T ss_pred -----eEEEEEEEE
Confidence 266666654
No 30
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=98.16 E-value=2.6e-06 Score=90.02 Aligned_cols=71 Identities=20% Similarity=0.348 Sum_probs=24.8
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCC-CCCcEEEEccchhhhhc-----cCCceEEeecccCcccCCCceEEE
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGS-NGLGISLIRNLRHLSQE-----QNRNYICQEYIANPFLIDGLKFDM 204 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gs-rGrGI~l~~~l~eI~~~-----~~~~~IVQkYI~nPlLIdGrKFDL 204 (714)
.|+++.+. .+++.++.+...-.+|+||..++ .|+|++++++.+++... ....+++|+||+. |+ ++
T Consensus 107 ~p~~~~~~--~~~~~~~~~~~~~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~lvEe~i~~-----g~--e~ 177 (365)
T 2z04_A 107 VPEFLVIK--RDEIIDALKSFKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHDKEESFIIEEFVKF-----EA--EI 177 (365)
T ss_dssp CCCEEEC----------------CEEEECC------------------------------CEEEECCCC-----SE--EE
T ss_pred CCCEEEEc--HHHHHHHHHhcCCCEEEEEcCCCcCCCCeEEECCHHHHHHHHHHhccCCCEEEEccCCC-----CE--EE
Confidence 67777654 34444444433346899999999 99999999998877632 2467999999962 44 66
Q ss_pred EEEEEE
Q psy13386 205 RVYTLI 210 (714)
Q Consensus 205 RvYVLV 210 (714)
++.++.
T Consensus 178 sv~~~~ 183 (365)
T 2z04_A 178 SCIGVR 183 (365)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 776654
No 31
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=98.13 E-value=2e-05 Score=85.12 Aligned_cols=68 Identities=16% Similarity=0.333 Sum_probs=40.6
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc-----------------cCCceEEeecccC
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE-----------------QNRNYICQEYIAN 193 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~-----------------~~~~~IVQkYI~n 193 (714)
.|+++.+.+ ..++.+ ..-.-.+|+||..|+.|+|++++++.+++... ....+|+|+||+
T Consensus 127 ~p~~~~~~~-~~~~~~--~~~g~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~- 202 (425)
T 3vot_A 127 TPVFHEFHT-LADLEN--RKLSYPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID- 202 (425)
T ss_dssp CCCEEEESS-GGGGTT--CCCCSSEEEEESCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCC-
T ss_pred CCceeccCc-HHHHHH--hhcCCcEEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEec-
Confidence 466666643 222221 11124589999999999999999999887531 246799999995
Q ss_pred cccCCCceEEEEEE
Q psy13386 194 PFLIDGLKFDMRVY 207 (714)
Q Consensus 194 PlLIdGrKFDLRvY 207 (714)
|.-|.+.++
T Consensus 203 -----G~e~sv~~~ 211 (425)
T 3vot_A 203 -----GPEFAIETL 211 (425)
T ss_dssp -----SCEEEEEEE
T ss_pred -----CcEEEEEEE
Confidence 665655443
No 32
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=98.12 E-value=5.6e-05 Score=82.55 Aligned_cols=60 Identities=12% Similarity=0.131 Sum_probs=44.0
Q ss_pred ccceeccCcchHHHHHHHhc----CCcEEEEeCC-CCCCCCcEEEEccchhhhh----ccCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTS----KKATVIVKPD-NGSNGLGISLIRNLRHLSQ----EQNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~----~k~~WIvKP~-~gsrGrGI~l~~~l~eI~~----~~~~~~IVQkYI~ 192 (714)
.|+++.+. +.+++..+.+. - -.+|+||. .|+.|+|++++++.+++.. .....+|||+||+
T Consensus 148 ~p~~~~v~-~~~e~~~~~~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~ 216 (419)
T 4e4t_A 148 VAPHVVIE-SAAALAALDDAALDAV-LPGILKTARLGYDGKGQVRVSTAREARDAHAALGGVPCVLEKRLP 216 (419)
T ss_dssp BCCEEEEC-SHHHHHTSCHHHHHTT-CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCCeEEEC-CHHHHHHHHHhhcccc-CCEEEEecCCCCCCCceEEECCHHHHHHHHHhcCCCcEEEeecCC
Confidence 56666553 35555544433 3 45899999 8999999999999988764 2357899999996
No 33
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=98.11 E-value=5.5e-05 Score=80.33 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=47.0
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc----------cCCceEEeecccCcccCCCc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE----------QNRNYICQEYIANPFLIDGL 200 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~----------~~~~~IVQkYI~nPlLIdGr 200 (714)
.|+++.+. +.+++..+.+...-.+|+||..++.|+|++++++.+++... ....++||+||+. |.
T Consensus 128 ~p~~~~~~-~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-----g~ 201 (391)
T 1kjq_A 128 TSTYRFAD-SESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-----DF 201 (391)
T ss_dssp BCCEEEES-SHHHHHHHHHHHCSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-----SE
T ss_pred CCCeeeeC-CHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-----Ce
Confidence 57776653 34555555544334689999999999999999998877531 2568999999972 33
Q ss_pred eEEEEEEEE
Q psy13386 201 KFDMRVYTL 209 (714)
Q Consensus 201 KFDLRvYVL 209 (714)
++++.++
T Consensus 202 --E~sv~~~ 208 (391)
T 1kjq_A 202 --EITLLTV 208 (391)
T ss_dssp --EEEEEEE
T ss_pred --EEEEEEE
Confidence 5666554
No 34
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=98.11 E-value=3.6e-05 Score=83.79 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=46.7
Q ss_pred cchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccCcccCCCceEEEEE
Q psy13386 139 RDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIANPFLIDGLKFDMRV 206 (714)
Q Consensus 139 ~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~nPlLIdGrKFDLRv 206 (714)
.+.+++..+.+...-.+|+||..++.|+|++++++.+++... ....++||+||+.+ -++++
T Consensus 138 ~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-------~e~~v 210 (451)
T 2vpq_A 138 KDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENF-------RHIEI 210 (451)
T ss_dssp SCHHHHHHHHHHHCSSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSE-------EEEEE
T ss_pred CCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCC-------eEEEE
Confidence 345566665554344689999999999999999998876531 24689999999732 25666
Q ss_pred EEEE
Q psy13386 207 YTLI 210 (714)
Q Consensus 207 YVLV 210 (714)
-++.
T Consensus 211 ~v~~ 214 (451)
T 2vpq_A 211 QIVG 214 (451)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 35
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=98.10 E-value=4.8e-05 Score=81.57 Aligned_cols=61 Identities=18% Similarity=0.311 Sum_probs=44.3
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCC-CCCcEEEEccchhhhh----ccCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGS-NGLGISLIRNLRHLSQ----EQNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gs-rGrGI~l~~~l~eI~~----~~~~~~IVQkYI~ 192 (714)
.|+++.+.. .+++..+.+.-.-.+|+||..++ .|+|++++++.+++.. .....+|+|+||.
T Consensus 125 ~p~~~~~~~-~~~~~~~~~~~g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~i~ 190 (377)
T 3orq_A 125 VVPFISVKE-STDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIETSECVAEKYLN 190 (377)
T ss_dssp BCCEEEECS-STHHHHHHHHTCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHHTTSCEEEEECCC
T ss_pred CCCeEEECC-HHHHHHHHHHcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcCCCcEEEEccCC
Confidence 566666543 34455555444446899999986 8999999999988764 2347899999996
No 36
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=98.06 E-value=2.6e-05 Score=85.65 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=46.7
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~ 192 (714)
.|+++.+. +.++..++.+...-.+|+||..++.|+|++++++.+++... ....+|||+||+
T Consensus 138 ~p~~~~~~-~~~ea~~~~~~~g~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~ 210 (442)
T 3lp8_A 138 TAKYGYFV-DTNSAYKFIDKHKLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE 210 (442)
T ss_dssp BCCEEEES-SHHHHHHHHHHSCSSEEEEESSCCTTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC
T ss_pred CCCEEEEC-CHHHHHHHHHHcCCcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec
Confidence 57776664 46667677665555689999999999999999998886531 136799999995
No 37
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=98.06 E-value=1.7e-05 Score=80.76 Aligned_cols=73 Identities=23% Similarity=0.381 Sum_probs=52.9
Q ss_pred cccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEc-cchhhhh-------ccCCceEEeecccCcccCCCce
Q psy13386 130 FFPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIR-NLRHLSQ-------EQNRNYICQEYIANPFLIDGLK 201 (714)
Q Consensus 130 f~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~-~l~eI~~-------~~~~~~IVQkYI~nPlLIdGrK 201 (714)
.+|+|+.+.. .+++..+.+..+ .+|+||..|+.|+|+++++ +.+++.. .....+++|+||+-+ ..
T Consensus 134 ~~P~t~~~~~-~~~~~~~~~~~~-p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~-----~~ 206 (316)
T 1gsa_A 134 LTPETLVTRN-KAQLKAFWEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAI-----KD 206 (316)
T ss_dssp TSCCEEEESC-HHHHHHHHHHHS-SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGG-----GG
T ss_pred cCCCeEEeCC-HHHHHHHHHHcC-CEEEEECCCCCcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCC-----CC
Confidence 5688887743 455555554433 6899999999999999998 7665542 124689999999732 25
Q ss_pred EEEEEEEE
Q psy13386 202 FDMRVYTL 209 (714)
Q Consensus 202 FDLRvYVL 209 (714)
+|+|++++
T Consensus 207 ~~~~v~~~ 214 (316)
T 1gsa_A 207 GDKRVLVV 214 (316)
T ss_dssp CEEEEEEE
T ss_pred CCEEEEEE
Confidence 89999875
No 38
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=98.05 E-value=0.00012 Score=77.59 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=46.8
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCC-CCCcEEEEccchhhhhc----cCCceEEeecccCcccCCCceEEEE
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGS-NGLGISLIRNLRHLSQE----QNRNYICQEYIANPFLIDGLKFDMR 205 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gs-rGrGI~l~~~l~eI~~~----~~~~~IVQkYI~nPlLIdGrKFDLR 205 (714)
.|+++.+. +.+++..+.+...-.+|+||..++ .|+|++++++.+++... ....+++|+||+. |+ ++.
T Consensus 111 ~p~~~~~~-~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~~-----g~--e~s 182 (369)
T 3aw8_A 111 TPPFHPVD-GPEDLEEGLKRVGLPALLKTRRGGYDGKGQALVRTEEEALEALKALGGRGLILEGFVPF-----DR--EVS 182 (369)
T ss_dssp CCCEEEES-SHHHHHHHHTTTCSSEEEEECCC------EEEECSHHHHHHHHTTTCSSSEEEEECCCC-----SE--EEE
T ss_pred CCCceeeC-CHHHHHHHHHHcCCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhcCCCcEEEEEcCCC-----CE--EEE
Confidence 46766653 355666666554456899999999 99999999999887642 2468999999962 54 455
Q ss_pred EEEEE
Q psy13386 206 VYTLI 210 (714)
Q Consensus 206 vYVLV 210 (714)
+.++.
T Consensus 183 v~~~~ 187 (369)
T 3aw8_A 183 LLAVR 187 (369)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55543
No 39
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=98.03 E-value=3.9e-05 Score=82.75 Aligned_cols=61 Identities=13% Similarity=0.285 Sum_probs=44.7
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~ 192 (714)
.|+++.+. +.+++.++.+...-.+|+||..++.|+|++++++.+++... ....++||+||+
T Consensus 117 ~p~~~~~~-~~~~~~~~~~~~~~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~ 189 (424)
T 2yw2_A 117 TARYEVFT-DFEKAKEYVEKVGAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE 189 (424)
T ss_dssp BCCEEEES-CHHHHHHHHHHHCSSEEEEESSCCTTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC
T ss_pred CCCeEEEC-CHHHHHHHHHHcCCcEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC
Confidence 57777663 35555555544334689999999999999999998877631 136799999995
No 40
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=98.00 E-value=1.9e-05 Score=86.42 Aligned_cols=71 Identities=14% Similarity=0.287 Sum_probs=51.1
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccCcccCC
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIANPFLID 198 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~nPlLId 198 (714)
.|+++.+. +.++..++.+...-.||+||..++.|+|++++++.+++... ....+|||+||+
T Consensus 122 tp~~~~~~-~~~ea~~~~~~~g~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~------ 194 (431)
T 3mjf_A 122 SAEYQNFT-DVEAALAYVRQKGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD------ 194 (431)
T ss_dssp BCCEEEES-CHHHHHHHHHHHCSSEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC------
T ss_pred CCCeEeeC-CHHHHHHHHHHcCCeEEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC------
Confidence 57776664 45666666654445699999999999999999998886531 135899999995
Q ss_pred CceEEEEEEEEE
Q psy13386 199 GLKFDMRVYTLI 210 (714)
Q Consensus 199 GrKFDLRvYVLV 210 (714)
|. ++.+.+++
T Consensus 195 G~--E~sv~~~~ 204 (431)
T 3mjf_A 195 GE--EASFIVMV 204 (431)
T ss_dssp SE--EEEEEEEE
T ss_pred Cc--EEEEEEEE
Confidence 53 55555553
No 41
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=98.00 E-value=5.8e-05 Score=81.33 Aligned_cols=71 Identities=21% Similarity=0.360 Sum_probs=50.5
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc--------cCCceEEeecccCcccCCCceE
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE--------QNRNYICQEYIANPFLIDGLKF 202 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~--------~~~~~IVQkYI~nPlLIdGrKF 202 (714)
.|+++.+. +.+++..+.+...-.+|+||..++.|+|++++++.+++... ....++||+||+ |.
T Consensus 116 ~p~~~~~~-~~~~~~~~~~~~~~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~------g~-- 186 (417)
T 2ip4_A 116 TARYRVFR-EPLEALAYLEEVGVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE------GE-- 186 (417)
T ss_dssp BCCEEEES-SHHHHHHHHHHHCSSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC------SC--
T ss_pred CCCeeeeC-CHHHHHHHHHHcCCCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc------Cc--
Confidence 57776653 35555555544334689999999999999999998887631 126899999996 43
Q ss_pred EEEEEEEE
Q psy13386 203 DMRVYTLI 210 (714)
Q Consensus 203 DLRvYVLV 210 (714)
++++.++.
T Consensus 187 E~sv~~~~ 194 (417)
T 2ip4_A 187 EATVLALT 194 (417)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 66776654
No 42
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=97.98 E-value=3.6e-05 Score=83.00 Aligned_cols=71 Identities=15% Similarity=0.313 Sum_probs=50.2
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccCcccCC
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIANPFLID 198 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~nPlLId 198 (714)
.|+++.+. +.+++.++.+...-.+|+||..++.|+|++++++.+++... ....++||+||+
T Consensus 117 ~p~~~~~~-~~~~~~~~~~~~~~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~------ 189 (422)
T 2xcl_A 117 TAEYETFT-SFDEAKAYVQEKGAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS------ 189 (422)
T ss_dssp BCCEEEES-CHHHHHHHHHHHCSSEEEEESSCGGGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC------
T ss_pred CCCeEEEC-CHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc------
Confidence 57776663 35556555544334689999999999999999998876631 136799999995
Q ss_pred CceEEEEEEEEE
Q psy13386 199 GLKFDMRVYTLI 210 (714)
Q Consensus 199 GrKFDLRvYVLV 210 (714)
|+ ++++.+++
T Consensus 190 g~--E~sv~~~~ 199 (422)
T 2xcl_A 190 GE--EFSLMAFV 199 (422)
T ss_dssp SE--EEEEEEEE
T ss_pred Cc--EEEEEEEE
Confidence 43 56665553
No 43
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=97.95 E-value=6.9e-05 Score=81.15 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=38.2
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc----------cCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE----------QNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~----------~~~~~IVQkYI~ 192 (714)
.|+++.+. +.+++..+.+...-.+|+||..++.|+|++++++.+++... ....++||+||+
T Consensus 136 ~p~~~~~~-~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~ 206 (433)
T 2dwc_A 136 TSRYMYAT-TLDELYEACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHID 206 (433)
T ss_dssp CCCEEEES-SHHHHHHHHHHHCSSEEEEECCC------EEECSGGGHHHHHHC---------CCEEEEECCC
T ss_pred CCCeeEeC-CHHHHHHHHHhcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCC
Confidence 57776654 34555555443334689999999999999999998887631 146799999997
No 44
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=97.92 E-value=2.6e-05 Score=91.61 Aligned_cols=70 Identities=26% Similarity=0.513 Sum_probs=49.8
Q ss_pred ccceeccCcchHHHHHHH-hcCCcEEEEeCCCCCCCCcEEEEc---cchhhhh------ccCCceEEeecccCcccCCCc
Q psy13386 131 FPQTWILPRDNREVHAFL-TSKKATVIVKPDNGSNGLGISLIR---NLRHLSQ------EQNRNYICQEYIANPFLIDGL 200 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~-k~~k~~WIvKP~~gsrGrGI~l~~---~l~eI~~------~~~~~~IVQkYI~nPlLIdGr 200 (714)
+|+++.+.. .++..++. ......+|+||..|++|+||.+++ +.+++.. .....++||+||. |
T Consensus 499 vP~~~~~~~-~~ea~~~~~~~~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~~~~~~~~vlVEefI~------G- 570 (750)
T 3ln6_A 499 TPFGDEFTD-RKEALNYFSQIQDKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDIAFTEDSAILVEEYIE------G- 570 (750)
T ss_dssp CCCCCCEET-TTTHHHHHHHSSSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHHHHHHCSEEEEEECCC------S-
T ss_pred CCCEEEECC-HHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHHHHhhCCcEEEEeccC------C-
Confidence 577766643 23333444 333467899999999999999998 6666553 1367899999996 6
Q ss_pred eEEEEEEEE
Q psy13386 201 KFDMRVYTL 209 (714)
Q Consensus 201 KFDLRvYVL 209 (714)
.|+|+.|+
T Consensus 571 -~E~~v~Vv 578 (750)
T 3ln6_A 571 -TEYRFFVL 578 (750)
T ss_dssp -EEEEEEEE
T ss_pred -CEEEEEEE
Confidence 49999886
No 45
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=97.91 E-value=0.00011 Score=79.89 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=48.4
Q ss_pred cccee--ccCcchHHH-HHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccCcc
Q psy13386 131 FPQTW--ILPRDNREV-HAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIANPF 195 (714)
Q Consensus 131 ~P~Tf--iLP~d~~~f-~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~nPl 195 (714)
.|+++ .+ .+.+++ .++.+...-.+|+||..++.|+|++++++.+++... ....++||+||+.+
T Consensus 130 ~p~~~~~~~-~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~- 207 (449)
T 2w70_A 130 CVPGSDGPL-GDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENP- 207 (449)
T ss_dssp BCSBCSSCC-CSCHHHHHHHHHHHCSSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSC-
T ss_pred cCCCccccc-CCHHHHHHHHHHHhCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCC-
Confidence 45555 33 234444 555443334689999999999999999998876531 15689999999732
Q ss_pred cCCCceEEEEEEEEE
Q psy13386 196 LIDGLKFDMRVYTLI 210 (714)
Q Consensus 196 LIdGrKFDLRvYVLV 210 (714)
-++++-++.
T Consensus 208 ------~e~~v~~~~ 216 (449)
T 2w70_A 208 ------RHVEIQVLA 216 (449)
T ss_dssp ------EEEEEEEEE
T ss_pred ------eEEEEEEEE
Confidence 255665554
No 46
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=97.90 E-value=0.00012 Score=80.03 Aligned_cols=71 Identities=15% Similarity=0.369 Sum_probs=45.5
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccCcccCC
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIANPFLID 198 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~nPlLId 198 (714)
.|+++.+. +.+++..+.....-.+|+||..++.|+|++++++.+++... ....+|||+||+
T Consensus 138 ~p~~~~~~-~~~~~~~~~~~~~~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~------ 210 (451)
T 2yrx_A 138 TADHAAFT-SYEEAKAYIEQKGAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE------ 210 (451)
T ss_dssp BCCEEEES-CHHHHHHHHHHHCSSEEEEECC----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC------
T ss_pred CCCeEEEC-CHHHHHHHHHhcCCcEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc------
Confidence 57776663 35555555543334689999999999999999998876531 136899999996
Q ss_pred CceEEEEEEEEE
Q psy13386 199 GLKFDMRVYTLI 210 (714)
Q Consensus 199 GrKFDLRvYVLV 210 (714)
|. ++.+.+++
T Consensus 211 G~--E~sv~~~~ 220 (451)
T 2yrx_A 211 GE--EFSFMAFV 220 (451)
T ss_dssp SE--EEEEEEEE
T ss_pred Cc--EEEEEEEE
Confidence 44 55555543
No 47
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=97.86 E-value=0.00022 Score=80.69 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=36.6
Q ss_pred chHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc--------cCCceEEeecccC
Q psy13386 140 DNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE--------QNRNYICQEYIAN 193 (714)
Q Consensus 140 d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~--------~~~~~IVQkYI~n 193 (714)
+.++...+.+.-.-.+|+||..|+.|+|++++++.+++... ....++||+||+.
T Consensus 216 s~~ea~~~a~~igyPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g 277 (540)
T 3glk_A 216 DVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQH 277 (540)
T ss_dssp SHHHHHHHHHHHCSSEEEEETTCC----EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSS
T ss_pred CHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC
Confidence 34555555443334689999999999999999999887641 2568999999973
No 48
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=97.81 E-value=0.0003 Score=80.53 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=40.7
Q ss_pred chHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc--------cCCceEEeecccC
Q psy13386 140 DNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE--------QNRNYICQEYIAN 193 (714)
Q Consensus 140 d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~--------~~~~~IVQkYI~n 193 (714)
+.++...+.+.-.-.+|+||..|+.|+||+++++.+++... ....++||+||+.
T Consensus 232 s~eea~~~a~~iGyPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g 293 (587)
T 3jrx_A 232 DVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQH 293 (587)
T ss_dssp SHHHHHHHHHHHCSSEEEEETTCCSSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCS
T ss_pred CHHHHHHHHHhcCCeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCC
Confidence 34555554443344689999999999999999999887641 2578999999974
No 49
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=97.81 E-value=0.00042 Score=78.14 Aligned_cols=54 Identities=11% Similarity=0.119 Sum_probs=40.8
Q ss_pred cchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc--------cCCceEEeeccc
Q psy13386 139 RDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE--------QNRNYICQEYIA 192 (714)
Q Consensus 139 ~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~--------~~~~~IVQkYI~ 192 (714)
.+.++...+.+.-.-.+|+||..++.|+|++++++.+++... ....++||+||.
T Consensus 221 ~~~~e~~~~~~~~g~PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~ 282 (554)
T 1w96_A 221 TSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAG 282 (554)
T ss_dssp SSHHHHHHHHHHHCSSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCC
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC
Confidence 345555555543334689999999999999999998887631 256899999997
No 50
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=97.80 E-value=0.00067 Score=73.32 Aligned_cols=61 Identities=11% Similarity=0.214 Sum_probs=45.0
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------c------CCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------Q------NRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------~------~~~~IVQkYI~ 192 (714)
.|+++.+ .+.+++.++.+.-.-.+|+||..++.|+|++++++.+++... . ...++||+||+
T Consensus 121 ~p~~~~~-~~~~e~~~~~~~~g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~ 193 (412)
T 1vkz_A 121 TARFEVA-ETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA 193 (412)
T ss_dssp CCCEEEE-SSHHHHHHHHTTSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC
T ss_pred CCCEEEE-CCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc
Confidence 4666555 345666676655445789999999999999999998876631 1 13799999995
No 51
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=97.80 E-value=0.00011 Score=76.82 Aligned_cols=43 Identities=28% Similarity=0.515 Sum_probs=31.2
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhhhccCCceEEeecccCcccCCCceEEEEEEEEE
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLSQEQNRNYICQEYIANPFLIDGLKFDMRVYTLI 210 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~~~~~~~~IVQkYI~nPlLIdGrKFDLRvYVLV 210 (714)
..||+||..|+.|+||+++++ ....+++|+||+ |+ ++++.++.
T Consensus 134 ~P~vvKP~~g~gs~Gv~~v~~-------~~~~~lvEe~I~------G~--e~sv~v~~ 176 (305)
T 3df7_A 134 CKFIIKPRTACAGEGIGFSDE-------VPDGHIAQEFIE------GI--NLSVSLAV 176 (305)
T ss_dssp SSEEEEESSCC----CBCCSS-------CCTTEEEEECCC------SE--EEEEEEEE
T ss_pred CCEEEEeCCCCCCCCEEEEec-------CCCCEEEEeccC------Cc--EEEEEEEe
Confidence 458999999999999999887 456899999996 54 66776664
No 52
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=97.78 E-value=0.00046 Score=75.38 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=44.7
Q ss_pred ccceec-cCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccC
Q psy13386 131 FPQTWI-LPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIAN 193 (714)
Q Consensus 131 ~P~Tfi-LP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~n 193 (714)
.|+++. .-.+.++...+.+...-.+|+||..++.|+|++++++.+++... ....++||+||+.
T Consensus 135 ~p~~~~~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g 210 (461)
T 2dzd_A 135 VIPGSDGPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIEN 210 (461)
T ss_dssp BCCBCSSCCSSHHHHHHHHHHHCSCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CCCCcccCcCCHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCC
Confidence 455552 22345566655544345689999999999999999998887531 2468999999973
No 53
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=97.74 E-value=0.00017 Score=74.66 Aligned_cols=59 Identities=24% Similarity=0.384 Sum_probs=26.2
Q ss_pred ccceeccCcchHHHHHHHh--cCCcEEEEeCCCCCCCCcEEEEccchhhhhc--cCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLT--SKKATVIVKPDNGSNGLGISLIRNLRHLSQE--QNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k--~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~--~~~~~IVQkYI~ 192 (714)
.|+|+..+. ++..++. .....+|+||..++.|+|++++++.+++... ....++||+||+
T Consensus 129 ~p~~~~~~~---~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~lvee~i~ 191 (331)
T 2pn1_A 129 HARTYATMA---SFEEALAAGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSKNTDLIVQELLV 191 (331)
T ss_dssp CCCEESSHH---HHHHHHHTTSSCSCEEEEESBC-----------------------CEEEEECCC
T ss_pred CCcEEecHH---HhhhhhhcccCCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHhCCCeEEEecCC
Confidence 577776433 3444442 2235689999999999999999998887642 246799999996
No 54
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=97.71 E-value=0.00027 Score=75.06 Aligned_cols=155 Identities=19% Similarity=0.306 Sum_probs=89.7
Q ss_pred eEEEEEEccCc--cHHHHHHHHHh---CCC-EEc--CC-------CCCe-----EEEEeCCCCChhh---hhhcCcCcee
Q psy13386 42 RVVATICLDLC--SYELVGRVARQ---CGM-TVV--DD-------KSLW-----DVLWSDPCIGPDT---HRRMKRFQRT 98 (714)
Q Consensus 42 ~~~i~i~~~~~--~y~~Vr~vl~~---~G~-~~v--~e-------~~~w-----dl~W~d~~~~~e~---~~~l~~~QkV 98 (714)
+..|-||.-.. +....+++|.+ .|+ .++ ++ -++| -|-|....++.+. +.+|..--.|
T Consensus 7 ~~~~gvcam~~k~~s~pm~~il~rl~~~~~f~~iif~d~~il~~~ve~wp~~d~lisf~s~gfpl~kai~y~~lr~p~~I 86 (330)
T 3t7a_A 7 QIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNPFVI 86 (330)
T ss_dssp CEEEEEESCHHHHTSHHHHHHHHHHTTSTTEEEEECCHHHHHHSCGGGSCCCSEEEECCCTTCCHHHHHHHHHHHCCEES
T ss_pred ceEEEEEecccccccHHHHHHHHHhcccCcEEEEEeCCCceecCCcccCCcCCEEEEeccCCCcHHHHHHHHHHhCCcee
Confidence 45677877543 34566777665 353 332 11 1334 3445445566543 2334333478
Q ss_pred cccCCCCcchhhHHHHHHHHHHHHHCCCCCCcccceeccCcchH-----HHH---HHHhcCC----cEEEEeCCCCC---
Q psy13386 99 NHFPLIMELCRKNLLAKNLNQMKIQYPNDYNFFPQTWILPRDNR-----EVH---AFLTSKK----ATVIVKPDNGS--- 163 (714)
Q Consensus 99 NHFPG~~~LtRKd~LarnL~rm~k~~p~~y~f~P~TfiLP~d~~-----~f~---~~~k~~k----~~WIvKP~~gs--- 163 (714)
|.+.-...+..|-.-.+.|.+. --=.|+|.++-.+.. +|. +++.... ..+|+||..|+
T Consensus 87 Nd~~~q~~~~DK~~~~~iL~~~-------gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~kPfVeKPv~Gsdhn 159 (330)
T 3t7a_A 87 NDLNMQYLIQDRREVYSILQAE-------GILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHN 159 (330)
T ss_dssp BCSTHHHHHTBHHHHHHHHHHT-------TCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEESSEEEEESBTTCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHc-------CCCCCCEEEEeCCCCCccccceeccchhhhhccccccCCeeEcccccccCc
Confidence 9887777777776666666541 123678877754321 111 1121111 55899999997
Q ss_pred --------CCCcE-EEEccchhh--------hhccCCceEEeecccCcccCCCceEEEEEEEE
Q psy13386 164 --------NGLGI-SLIRNLRHL--------SQEQNRNYICQEYIANPFLIDGLKFDMRVYTL 209 (714)
Q Consensus 164 --------rGrGI-~l~~~l~eI--------~~~~~~~~IVQkYI~nPlLIdGrKFDLRvYVL 209 (714)
+|.|- .++++...- .......||+|+||.. +| -|+|+||+
T Consensus 160 i~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~----~G--~DIRv~vV 216 (330)
T 3t7a_A 160 VYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPT----DG--TDVKVYTV 216 (330)
T ss_dssp CEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCC----SS--EEEEEEEE
T ss_pred ceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCC----CC--ceEEEEEE
Confidence 88887 666544311 1125678999999974 56 69999996
No 55
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=97.70 E-value=0.00036 Score=76.13 Aligned_cols=71 Identities=15% Similarity=0.257 Sum_probs=47.3
Q ss_pred ccceeccCcchHHHHHHHhcCCcE-EEEeCCCCCCCCcEEEEccchhhhhc-----c-------CCceEEeecccCcccC
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKAT-VIVKPDNGSNGLGISLIRNLRHLSQE-----Q-------NRNYICQEYIANPFLI 197 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~-WIvKP~~gsrGrGI~l~~~l~eI~~~-----~-------~~~~IVQkYI~nPlLI 197 (714)
.|+++.+. +.+++.++.+...-. +|+||..++.|+|++++++.+++... . ...++||+||+
T Consensus 143 ~p~~~~~~-~~~~~~~~~~~~g~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~----- 216 (452)
T 2qk4_A 143 TAQWKAFT-KPEEACSFILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD----- 216 (452)
T ss_dssp BCCEEEES-SHHHHHHHHHHCSSCEEEEEESBC---CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC-----
T ss_pred CCCeEEEC-CHHHHHHHHHhCCCCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC-----
Confidence 56766653 355566666554445 89999999999999999998877631 1 36799999996
Q ss_pred CCceEEEEEEEEE
Q psy13386 198 DGLKFDMRVYTLI 210 (714)
Q Consensus 198 dGrKFDLRvYVLV 210 (714)
|+ ++.+.++.
T Consensus 217 -G~--E~sv~~~~ 226 (452)
T 2qk4_A 217 -GE--EVSCLCFT 226 (452)
T ss_dssp -SE--EEEEEEEE
T ss_pred -CC--eEEEEEEE
Confidence 43 66666654
No 56
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=97.69 E-value=0.00028 Score=78.44 Aligned_cols=63 Identities=17% Similarity=0.296 Sum_probs=47.2
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------------cCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------------QNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------------~~~~~IVQkYI~ 192 (714)
.|+++.+. +.+++.++.+.-.-.+|+||..|+.|+|+.++++.+++... ....++||+||.
T Consensus 154 vp~~~~v~-s~ee~~~~~~~lg~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~ 232 (474)
T 3vmm_A 154 SIKNKRVT-TLEDFRAALEEIGTPLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQ 232 (474)
T ss_dssp CCCEEEEC-SHHHHHHHHHHSCSSEEEEESSCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCC
T ss_pred CCCeEEEC-CHHHHHHHHHHcCCCEEEEECCCCcCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCC
Confidence 56777664 35566666655455689999999999999999998886531 146899999998
Q ss_pred Cc
Q psy13386 193 NP 194 (714)
Q Consensus 193 nP 194 (714)
.+
T Consensus 233 G~ 234 (474)
T 3vmm_A 233 GE 234 (474)
T ss_dssp BC
T ss_pred Cc
Confidence 54
No 57
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=97.59 E-value=0.0012 Score=70.81 Aligned_cols=126 Identities=15% Similarity=0.053 Sum_probs=67.3
Q ss_pred HHHHHHhCCCEEcCCCC---------CeEEEEeCC-CCChhhhhhcCcCceecccCCCCcc--h-hhHHHHHHHHHHHHH
Q psy13386 57 VGRVARQCGMTVVDDKS---------LWDVLWSDP-CIGPDTHRRMKRFQRTNHFPLIMEL--C-RKNLLAKNLNQMKIQ 123 (714)
Q Consensus 57 Vr~vl~~~G~~~v~e~~---------~wdl~W~d~-~~~~e~~~~l~~~QkVNHFPG~~~L--t-RKd~LarnL~rm~k~ 123 (714)
+..+++++|+++.+.+. ..|++.... .++.+.+..+... ..-.|+...+ + .|...-+.+.+
T Consensus 16 ~~~aa~~lG~~v~~~~~~a~~~~~~l~~d~it~e~e~v~~~~l~~l~~~--~~v~p~~~a~~~~~DK~~~k~~l~~---- 89 (355)
T 3eth_A 16 LRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRQLAR--HPAFVNRDVFPIIADRLTQKQLFDK---- 89 (355)
T ss_dssp HHHHHGGGTCEEEEECTTCCGGGCCCTTSEEEESCSCCCCCHHHHHHHT--CTTBTTTTHHHHHHSHHHHHHHHHH----
T ss_pred HHHHHHHCCCEEECCCCCCCceEEcccCCEEEECcCCcCHHHHHHHHhc--CCcCCCHHHHHHhcCHHHHHHHHHH----
Confidence 34556677777643222 234444433 2333434433322 2556666533 2 34333332221
Q ss_pred CCCCCCcccceeccCcchHHHHHHHhcCCcEEEEeCCCC-CCCCcEEEEcc--chhhhhccCCceEEeeccc
Q psy13386 124 YPNDYNFFPQTWILPRDNREVHAFLTSKKATVIVKPDNG-SNGLGISLIRN--LRHLSQEQNRNYICQEYIA 192 (714)
Q Consensus 124 ~p~~y~f~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~g-srGrGI~l~~~--l~eI~~~~~~~~IVQkYI~ 192 (714)
.+ --.|+++.+.+ .+++..+.+.-.-.+|+||..+ +.|+|++++++ .+++....-..+|||+||+
T Consensus 90 ~G---Iptp~~~~v~~-~~e~~~~~~~~G~P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~~~~vivEe~I~ 157 (355)
T 3eth_A 90 LH---LPTAPWQLLAE-RSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGIN 157 (355)
T ss_dssp TT---CCBCCEEEECC-GGGHHHHHHHHCSEEEEEESSSCCTTTTEEEEETTCGGGSCGGGTTTEEEEECCC
T ss_pred Cc---cCCCCEEEECC-HHHHHHHHHHcCCCEEEEecCCCCCCCeEEEEcCCCHHHHHHHhhCCEEEEEccC
Confidence 11 11445444432 3344444433335689999984 89999999999 8887632111699999996
No 58
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=97.57 E-value=0.00025 Score=83.33 Aligned_cols=70 Identities=21% Similarity=0.495 Sum_probs=51.0
Q ss_pred ccceeccCcchHHHHHHH-hcCCcEEEEeCCCCCCCCcEEEE----ccchhhhh------ccCCceEEeecccCcccCCC
Q psy13386 131 FPQTWILPRDNREVHAFL-TSKKATVIVKPDNGSNGLGISLI----RNLRHLSQ------EQNRNYICQEYIANPFLIDG 199 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~-k~~k~~WIvKP~~gsrGrGI~l~----~~l~eI~~------~~~~~~IVQkYI~nPlLIdG 199 (714)
+|+++.+. +.++...++ ......+|+||..|+.|+||.++ .+.+++.. .....++||+||. |
T Consensus 504 vP~~~~~~-~~~ea~~~~~~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~~~~~vlVEefI~------G 576 (757)
T 3ln7_A 504 VPQSVEFT-SLEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFREDKEVMVEDYLV------G 576 (757)
T ss_dssp CCCEEEES-CHHHHHHGGGGSSSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHHHCSSEEEEECCC------S
T ss_pred CCCEEEEC-CHHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHhcCCcEEEEEcCC------C
Confidence 57777664 355555555 33345689999999999999998 67776653 1356799999993 5
Q ss_pred ceEEEEEEEE
Q psy13386 200 LKFDMRVYTL 209 (714)
Q Consensus 200 rKFDLRvYVL 209 (714)
.|+|+.|+
T Consensus 577 --~Ei~v~Vl 584 (757)
T 3ln7_A 577 --TEYRFFVL 584 (757)
T ss_dssp --EEEEEEEE
T ss_pred --cEEEEEEE
Confidence 49999885
No 59
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=97.45 E-value=0.00021 Score=83.01 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=8.7
Q ss_pred cccee-ccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccCcccC
Q psy13386 131 FPQTW-ILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIANPFLI 197 (714)
Q Consensus 131 ~P~Tf-iLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~nPlLI 197 (714)
.|++| ....+.+++..+.+.-.-.+|+||..|+.|+|++++++.+++... ....++||+||+.|
T Consensus 130 vpp~~~~~~~s~~e~~~~a~~igyPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~--- 206 (681)
T 3n6r_A 130 TVPGYMGLIEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQP--- 206 (681)
T ss_dssp CCCC---------------------------------------------------------------------CCSC---
T ss_pred cCCccccCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCC---
Confidence 34444 233344445444443334579999999999999999998887631 14579999999854
Q ss_pred CCceEEEEEEEE
Q psy13386 198 DGLKFDMRVYTL 209 (714)
Q Consensus 198 dGrKFDLRvYVL 209 (714)
-++.+-++
T Consensus 207 ----rei~V~v~ 214 (681)
T 3n6r_A 207 ----RHIEIQVL 214 (681)
T ss_dssp ----EEEEEEEE
T ss_pred ----cEEEEEEE
Confidence 35555554
No 60
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=97.43 E-value=0.00029 Score=81.72 Aligned_cols=64 Identities=14% Similarity=0.284 Sum_probs=39.1
Q ss_pred ccceecc-CcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccCc
Q psy13386 131 FPQTWIL-PRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIANP 194 (714)
Q Consensus 131 ~P~TfiL-P~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~nP 194 (714)
.|++|.. ..+.+++..+.+.-.-.+|+||..|+.|+|++++++.+++... ....+++|+||+.|
T Consensus 156 vpp~~~~~~~s~~e~~~~a~~igyPvvvKp~~G~Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~ 232 (675)
T 3u9t_A 156 LVPGYHGEAQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKP 232 (675)
T ss_dssp BCCCCCSCCCCTTHHHHHHHHSCSSBCCBCCC------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSC
T ss_pred cCCccccCCCCHHHHHHHHHhCCCcEEEEECCCCCCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCC
Confidence 4555542 2445556555554444579999999999999999999887641 14579999999854
No 61
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.31 E-value=0.0018 Score=78.79 Aligned_cols=61 Identities=7% Similarity=0.091 Sum_probs=34.6
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc--------cCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE--------QNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~--------~~~~~IVQkYI~ 192 (714)
.|+++.+. +.++...+.+.-.-.+|+||..++.|+|+.++.+.+++... ....++||+||+
T Consensus 689 ~P~~~~~~-s~eea~~~~~~ig~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~ 757 (1073)
T 1a9x_A 689 QPANATVT-AIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLD 757 (1073)
T ss_dssp CCCEEECC-SHHHHHHHHHHHCSSEEEEC-------CEEEECSHHHHHHHHHHCC--------EEEBCCT
T ss_pred CCCceEEC-CHHHHHHHHHHcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccC
Confidence 56666553 34555555443334589999999999999999999887641 246799999996
No 62
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.12 E-value=0.0025 Score=77.60 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=44.6
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc--------cCCceEEeeccc
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE--------QNRNYICQEYIA 192 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~--------~~~~~IVQkYI~ 192 (714)
.|+++.+.. .++...+.+.-.-.+|+||..+..|+|+.++.+.+++... ....++||+||.
T Consensus 143 vp~~~~v~~-~~ea~~~~~~ig~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~ 211 (1073)
T 1a9x_A 143 TARSGIAHT-MEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLI 211 (1073)
T ss_dssp CCSEEEESS-HHHHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCT
T ss_pred CCCEEEECC-HHHHHHHHHHcCCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccC
Confidence 577776643 4445554443334689999999999999999998887641 245899999996
No 63
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=97.02 E-value=0.0021 Score=78.86 Aligned_cols=54 Identities=22% Similarity=0.441 Sum_probs=30.8
Q ss_pred hHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccCc
Q psy13386 141 NREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIANP 194 (714)
Q Consensus 141 ~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~nP 194 (714)
.+++..+.+.-.-.+|+||..|+.|+|++++++.+++... ....++||+||+.|
T Consensus 144 ~eea~~~a~~iGyPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~ 209 (1150)
T 3hbl_A 144 YELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNP 209 (1150)
T ss_dssp SSTTTTTGGGTCSSEEEECCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCC
Confidence 3333333333334589999999999999999998886531 14679999999754
No 64
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=97.00 E-value=0.00059 Score=76.21 Aligned_cols=129 Identities=19% Similarity=0.225 Sum_probs=79.8
Q ss_pred CceecccCCCCcchhhHHHHHHHHHHHHHC-CCC--CCcccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEE
Q psy13386 95 FQRTNHFPLIMELCRKNLLAKNLNQMKIQY-PND--YNFFPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLI 171 (714)
Q Consensus 95 ~QkVNHFPG~~~LtRKd~LarnL~rm~k~~-p~~--y~f~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~ 171 (714)
--.+|. ||+..+-.|..++- |-+|.+.+ +++ ...+|.+|+- +.+ -.+++-.+..-|++||..++.|.|+.+-
T Consensus 307 V~i~Na-~gsgv~~dKal~a~-Lp~l~~~~lgEe~il~~VpT~~c~--~~~-~~~~vl~~l~~lViKp~~g~gg~gv~iG 381 (474)
T 3n6x_A 307 VTLANA-VGTGVADDKDTYIY-VPEMIRFYLGEEPILSNVPTYQLS--KAD-DLKYVLDNLAELVVKEVQGSGGYGMLVG 381 (474)
T ss_dssp CEEESC-TTTHHHHSTTTGGG-HHHHHHHHHCSCCSSEECCCEETT--SHH-HHHHHHHSGGGEEEEECCCE-----EEG
T ss_pred EEEeCC-CchhhhcCcHHHHH-hHHHHHHhCCHhhhccCCCceecC--CHH-HHHHHHhchhheEEEecCCCCCCceEEC
Confidence 346787 78888888875543 23343333 332 2456766653 222 2334334446799999999999999885
Q ss_pred ccchh--hhh------ccCCceEEeeccc---CcccCCC----ceEEEEEEEEEeeecCCEEEEEeceEEEeccCC
Q psy13386 172 RNLRH--LSQ------EQNRNYICQEYIA---NPFLIDG----LKFDMRVYTLITSFDPMRIYVHKDGIVRFATVK 232 (714)
Q Consensus 172 ~~l~e--I~~------~~~~~~IVQkYI~---nPlLIdG----rKFDLRvYVLVTS~dPLrIYlY~eGlvRfAt~~ 232 (714)
...+. ... .....||+|+||. .|.+.+| +++|||.|++-. -..+++-.||.|+|..+
T Consensus 382 ~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~g----~~~~v~pGgltRva~~~ 453 (474)
T 3n6x_A 382 PAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSG----KTVSLVPGALCRVALRE 453 (474)
T ss_dssp GGCCHHHHHHHHHHHHHSGGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEES----SSEEECSCCEEEEECST
T ss_pred CcCCHHHHHHHHHHHHhCCCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEcC----CceEEecceEEEEecCC
Confidence 54432 111 1345699999997 3444455 789999999863 24788999999999864
No 65
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=97.00 E-value=0.0017 Score=79.75 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=8.7
Q ss_pred hHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccCcccCCCceEEEEEEE
Q psy13386 141 NREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIANPFLIDGLKFDMRVYT 208 (714)
Q Consensus 141 ~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~nPlLIdGrKFDLRvYV 208 (714)
.+++..+...-.-.+|+||..++.|+|++++++.+++... ....++||+||+. |+ ++.+-+
T Consensus 160 ~eea~~~a~~igyPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~g-----g~--EisV~v 232 (1165)
T 2qf7_A 160 MAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVER-----AR--HVESQI 232 (1165)
T ss_dssp ------------------------------------------------------------CCCSS-----EE--EEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccC-----Cc--EEEEEE
Confidence 4444444433334689999999999999999998877531 1356899999973 33 455555
Q ss_pred EE
Q psy13386 209 LI 210 (714)
Q Consensus 209 LV 210 (714)
+.
T Consensus 233 l~ 234 (1165)
T 2qf7_A 233 LG 234 (1165)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 66
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=96.98 E-value=0.0025 Score=67.22 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=28.4
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhhhccCCceEEeeccc
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLSQEQNRNYICQEYIA 192 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~~~~~~~~IVQkYI~ 192 (714)
-.+|+||..++.|+|++++++.+++.. ....+++|+||.
T Consensus 126 ~P~vvKp~~g~g~~gv~~v~~~~~~~~-~~~~~~~ee~i~ 164 (363)
T 4ffl_A 126 PPYFVKPPCESSSVGARIIYDDKDLEG-LEPDTLVEEYVE 164 (363)
T ss_dssp SCEEEECSSCCTTTTCEEEC------C-CCTTCEEEECCC
T ss_pred CCEEEEECCCCCCcCeEEeccHHHhhh-hccchhhhhhcc
Confidence 458999999999999999999988763 456789999984
No 67
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=96.79 E-value=0.0054 Score=75.70 Aligned_cols=55 Identities=16% Similarity=0.392 Sum_probs=0.4
Q ss_pred cchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccC
Q psy13386 139 RDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIAN 193 (714)
Q Consensus 139 ~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~n 193 (714)
.+.++...+.+.-.-.+|+||..++.|+|++++++.+++... ....++||+||+.
T Consensus 167 ~s~eea~~~a~~iGyPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G 233 (1236)
T 3va7_A 167 KDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN 233 (1236)
T ss_dssp ------------------------------------------------------------------C
T ss_pred CCHHHHHHHHHHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC
Confidence 344444444443334579999999999999999998886531 2456899999973
No 68
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=96.45 E-value=0.0085 Score=64.53 Aligned_cols=40 Identities=25% Similarity=0.335 Sum_probs=30.0
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhhhc-------c----C--CceEEeeccc
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLSQE-------Q----N--RNYICQEYIA 192 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~~~-------~----~--~~~IVQkYI~ 192 (714)
...|+||..++.|+|++++++.+++... . . ..+|||+||.
T Consensus 151 ~PvVVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~ 203 (361)
T 2r7k_A 151 GTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV 203 (361)
T ss_dssp SCEEEECSCCCC---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC
T ss_pred CCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc
Confidence 4689999999999999999999887631 0 1 4689999997
No 69
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.66 E-value=0.012 Score=50.66 Aligned_cols=63 Identities=16% Similarity=0.335 Sum_probs=44.1
Q ss_pred cccee--ccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhhhc------------cCCceEEeecccCc
Q psy13386 131 FPQTW--ILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQE------------QNRNYICQEYIANP 194 (714)
Q Consensus 131 ~P~Tf--iLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~~~------------~~~~~IVQkYI~nP 194 (714)
.|+++ .+ .+.+++..+...-.-.+|+||..++.|+|+.++++.+++... ....++||+||.-+
T Consensus 23 ~p~~~~~~~-~~~~~~~~~~~~~~~P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g~ 99 (108)
T 2cqy_A 23 TIPGFDGVV-KDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNP 99 (108)
T ss_dssp CCSCCCSCB-SSHHHHHHHHHHHCSSEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSSS
T ss_pred CCCCccccc-CCHHHHHHHHHhcCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCCC
Confidence 46666 33 344555444433234689999999999999999998876531 14679999999744
No 70
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=94.80 E-value=0.22 Score=52.78 Aligned_cols=39 Identities=15% Similarity=0.333 Sum_probs=20.0
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhhhcc---CCceEEeeccc
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLSQEQ---NRNYICQEYIA 192 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~~~~---~~~~IVQkYI~ 192 (714)
-..|+||..++.|+|++++++ +++.... ...+|||+||.
T Consensus 126 ~PviVKp~~g~ggkG~~~v~~-eel~~~~~~~~~~~IiEEfI~ 167 (320)
T 2pbz_A 126 ELYFVRIEGPRGGSGHFIVEG-SELEERLSTLEEPYRVERFIP 167 (320)
T ss_dssp CCEEEECC------------C-EECSCCCC----CCEEEECCC
T ss_pred CcEEEEECCCCCCCCEEEECh-HHHHHHHHhcCCCEEEEeeec
Confidence 457999999999999999999 9886421 15789999996
No 71
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=85.04 E-value=1.4 Score=50.89 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=50.2
Q ss_pred cchhhHHHHHHHHHHHHHCCCCCCcccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhh-h----hc
Q psy13386 106 ELCRKNLLAKNLNQMKIQYPNDYNFFPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHL-S----QE 180 (714)
Q Consensus 106 ~LtRKd~LarnL~rm~k~~p~~y~f~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI-~----~~ 180 (714)
.+.+|..|+-... ++|. ..+++.|+.-+. . ++ . . .-||+||..|..|.||.+.+.-.+. . ..
T Consensus 494 llsNKailalLw~----l~p~-hp~LLpT~f~~~-~-~l-~---~--~~yV~KPi~gReG~nV~i~~~~~~~~~~~~~~y 560 (619)
T 2io8_A 494 IPGNKAILPILWS----LFPH-HRYLLDTDFTVN-D-EL-V---K--TGYAVKPIAGRCGSNIDLVSHHEEVLDKTSGKF 560 (619)
T ss_dssp TTTSTTHHHHHHH----HSTT-CTTCCCEESSCC-H-HH-H---H--HCEEEEETTCCTTTTCEEECTTSCEEEECCCTT
T ss_pred HhhhHHHHHHHHH----hCCC-CCCCCCeeecCC-c-cc-c---c--CCEEEccCCCCCCCCEEEEeCCChhHhhccccc
Confidence 3688887775433 3553 335666663322 2 11 1 1 3499999999999999999862221 1 12
Q ss_pred cCCceEEeecccCcccCCC
Q psy13386 181 QNRNYICQEYIANPFLIDG 199 (714)
Q Consensus 181 ~~~~~IVQkYI~nPlLIdG 199 (714)
..+.+|.|+|+.-|- .+|
T Consensus 561 ~~~~~IyQe~~~lp~-~d~ 578 (619)
T 2io8_A 561 AEQKNIYQQLWCLPK-VDG 578 (619)
T ss_dssp TTSCEEEEECCCCCE-ETT
T ss_pred cCCCeEEEEecCCCC-cCC
Confidence 357899999998653 444
No 72
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=76.79 E-value=2.9 Score=48.49 Aligned_cols=88 Identities=15% Similarity=0.061 Sum_probs=38.2
Q ss_pred cchhhHHHHHHHHHHHHHCCCCCCcccceeccCcchHHHHHHHhcCCcEEEEeCCCCCCCCcEEEEccchhhh-h----c
Q psy13386 106 ELCRKNLLAKNLNQMKIQYPNDYNFFPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLS-Q----E 180 (714)
Q Consensus 106 ~LtRKd~LarnL~rm~k~~p~~y~f~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~gsrGrGI~l~~~l~eI~-~----~ 180 (714)
.+.+|..|+- | -.++|.. .+++.||.-+. . + ... .-||+||..|..|.||.+.+.-.++. . .
T Consensus 509 LlsNKaiLal-L---W~l~p~h-p~LLpt~f~~~-~--~---~~~--~~yV~KPi~gReG~nV~I~~~~~~~~~~~~g~y 575 (652)
T 2vob_A 509 IPSNKAILPM-I---YHNHPEH-PAILKAEYELT-D--E---LRK--HGYAKKPIVGRVGSNVIITSGDGVVHAESGGKY 575 (652)
T ss_dssp TTTSTTHHHH-H---HHHCTTC-TTBCCEESSCC-H--H---HHH--HCEEEEECC------------------------
T ss_pred hhcCHHHHHH-H---HhcccCC-CCCCchhhcCC-C--c---ccc--CCeEeccCCCCCCCCEEEEcCCchhhhhccccc
Confidence 4678877764 2 2346653 45666663332 1 1 111 24999999999999999986533321 1 2
Q ss_pred cCCceEEeecccCcccCCCceEEEEEE
Q psy13386 181 QNRNYICQEYIANPFLIDGLKFDMRVY 207 (714)
Q Consensus 181 ~~~~~IVQkYI~nPlLIdGrKFDLRvY 207 (714)
..+.+|+|+|+.-| .++|.-.-+.+|
T Consensus 576 ~~~~~IyQe~~~lp-~f~~~~~~iG~~ 601 (652)
T 2vob_A 576 GKRNMIYQQLFELK-KQDDYYAIIGGW 601 (652)
T ss_dssp ---CEEEEECCC---CBTTBCCEEEEE
T ss_pred CCCCeEEEecccCC-ccCCcceEEEEE
Confidence 45789999999855 456543333333
No 73
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=55.12 E-value=26 Score=39.07 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHhhcc----------------------cCCCCCCCCCeEEEEEEEEEecCCCCeEEE
Q psy13386 287 DLVWSRIDDVIVKTVLSAHPNIKTMYNS----------------------VFPRHNYMTACFQLLGFDILLDDTLNPYVL 344 (714)
Q Consensus 287 ~~lw~~IkdiIikTllAa~p~L~~~y~~----------------------~~~~~~~~~~cFELlGfDfLLD~~lKPWLL 344 (714)
..-|..|+..+.+.+.+....+..-|.. |.+-.........+.|+|++.|.+|.-|+|
T Consensus 81 ~~eW~~le~Gl~QR~~~Ln~~l~DiYg~q~il~~G~iP~lv~~~p~y~~~~~g~~p~~~~~~~i~~~Dl~r~~dG~~~vl 160 (474)
T 3n6x_A 81 ASEWARLSDGAIQRVKALNMFLHDVYHDQEIIKAGIVPSSILANAQYRPEMFGVDVPGGVYAHIAGVDLVRTGENDFYVL 160 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHTTSSCGGGGGCTTCCGGGTTCCCGGGCSCSEEEEEEEECSSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHhcCCCHHHHccCccccHHHCCCCCCCCeEEEEEEEEEEECCCCCEEEE
Confidence 3567777777776666655555544421 111011112234588999999999999999
Q ss_pred Eeec-CCCCCCCChhhHHHHHHHHHHHHHhcCCCch
Q psy13386 345 EVNH-SPSFYTDTEIDVEIKEQVLRDTFILCNLNSS 379 (714)
Q Consensus 345 EVN~-sPSl~tds~lD~~vK~~LI~DtL~Ll~i~~~ 379 (714)
|-|. .||--...-.+..+-..++.+.|.-.++...
T Consensus 161 Edn~~~PSG~~y~lenR~~~~r~~pelf~~~~v~~~ 196 (474)
T 3n6x_A 161 EDNLRTPSGVSYMLENRKMMMRLFPELFRRYPVAPV 196 (474)
T ss_dssp EEECSSCCCHHHHHHHHHHHHHHCHHHHHHSCBCCC
T ss_pred EeCCCCCchHHHHHHHHHHHHHHhHHHHHhcCCCCc
Confidence 9998 5764332323556667777777777766543
No 74
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=54.82 E-value=9.5 Score=37.75 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=40.2
Q ss_pred ccceeccCcchHHHHHHHhcCCcEEEEeCCCC-----CCCCcEEE-Eccchhhhhc-------c--------CCceEEee
Q psy13386 131 FPQTWILPRDNREVHAFLTSKKATVIVKPDNG-----SNGLGISL-IRNLRHLSQE-------Q--------NRNYICQE 189 (714)
Q Consensus 131 ~P~TfiLP~d~~~f~~~~k~~k~~WIvKP~~g-----srGrGI~l-~~~l~eI~~~-------~--------~~~~IVQk 189 (714)
.|+++.+.+ .++.......-.-.+++||..+ +.|.|+.+ +++.+++... . ...++||+
T Consensus 36 ~p~~~~~~~-~~ea~~~a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vlVEe 114 (238)
T 1wr2_A 36 VPEEKLAKT-LDEALEYAKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVAP 114 (238)
T ss_dssp CCCCEEESS-HHHHHHHHHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEEE
T ss_pred CCCeEEeCC-HHHHHHHHHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEEEEE
Confidence 577766533 4444443332234579999988 66788888 6888876531 1 26799999
Q ss_pred ccc
Q psy13386 190 YIA 192 (714)
Q Consensus 190 YI~ 192 (714)
||.
T Consensus 115 ~i~ 117 (238)
T 1wr2_A 115 MLK 117 (238)
T ss_dssp CCC
T ss_pred CCC
Confidence 996
No 75
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=54.54 E-value=54 Score=35.99 Aligned_cols=88 Identities=24% Similarity=0.311 Sum_probs=60.9
Q ss_pred cEEEEeCCCCCCCCcEEEEccchhhhh---------------ccCCceEEeecccCcccCCCceEEEEEEEEEeeecCCE
Q psy13386 153 ATVIVKPDNGSNGLGISLIRNLRHLSQ---------------EQNRNYICQEYIANPFLIDGLKFDMRVYTLITSFDPMR 217 (714)
Q Consensus 153 ~~WIvKP~~gsrGrGI~l~~~l~eI~~---------------~~~~~~IVQkYI~nPlLIdGrKFDLRvYVLVTS~dPLr 217 (714)
...|||.++|.-|.||..+++.+++.. ..-...|||+-|..=-.++|.--.==+|++ |-
T Consensus 278 PfV~VKADaGTYGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmi----d~-- 351 (432)
T 3k1t_A 278 PFVIVKADAGTYGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYTFEHLKDAVAEPVIYMM----DH-- 351 (432)
T ss_dssp CCEEEEEECGGGCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCCCEEETTEEEEEEEEEE----TT--
T ss_pred ceEEEEcCCCCCCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcchhhhhCCccccceEEEE----CC--
Confidence 566889999999999999999999873 134579999999744445665433333332 11
Q ss_pred EEEEeceEEEeccCCCCCCCCCCCCCceeEeeec
Q psy13386 218 IYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNY 251 (714)
Q Consensus 218 IYlY~eGlvRfAt~~Y~~p~~~Nl~d~~~HLTNy 251 (714)
| --.|+-|..+..=. ..|++...||+---
T Consensus 352 -~-vvGgFyRvh~~rg~---dENLNapGm~F~pl 380 (432)
T 3k1t_A 352 -F-VVGGFYRVHTSRGA---DENLNAPGMHFEPL 380 (432)
T ss_dssp -E-EEEEEEEEESCCST---TTTTSCCTTCEEEE
T ss_pred -E-EEEEEEEecCCCCC---ccCCCCCCCEeeec
Confidence 0 02578888887644 57888888998643
No 76
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=20.60 E-value=5.1 Score=37.97 Aligned_cols=18 Identities=44% Similarity=0.855 Sum_probs=11.2
Q ss_pred CCCeEEEEeecCCCCCCC
Q psy13386 338 TLNPYVLEVNHSPSFYTD 355 (714)
Q Consensus 338 ~lKPWLLEVN~sPSl~td 355 (714)
+++|||-||+.+||-...
T Consensus 105 dl~pwl~ei~~~p~~~~~ 122 (144)
T 4e9m_A 105 DLRPWLLEIGFSPSLLTQ 122 (144)
T ss_dssp GGHHHHHHTTCC------
T ss_pred chhHHHHHhCCCcHHHhc
Confidence 579999999999997543
Done!