RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13386
(714 letters)
>gnl|CDD|217380 pfam03133, TTL, Tubulin-tyrosine ligase family. Tubulins and
microtubules are subjected to several post-translational
modifications of which the reversible
detyrosination/tyrosination of the carboxy-terminal end
of most alpha-tubulins has been extensively analysed.
This modification cycle involves a specific
carboxypeptidase and the activity of the
tubulin-tyrosine ligase (TTL). The true physiological
function of TTL has so far not been established.
Tubulin-tyrosine ligase (TTL) catalyzes the
ATP-dependent post-translational addition of a tyrosine
to the carboxy terminal end of detyrosinated
alpha-tubulin. In normally cycling cells, the
tyrosinated form of tubulin predominates. However, in
breast cancer cells, the detyrosinated form frequently
predominates, with a correlation to tumour
aggressiveness. On the other hand, 3-nitrotyrosine has
been shown to be incorporated, by TTL, into the carboxy
terminal end of detyrosinated alpha-tubulin. This
reaction is not reversible by the carboxypeptidase
enzyme. Cells cultured in 3-nitrotyrosine rich medium
showed evidence of altered microtubule structure and
function, including altered cell morphology, epithelial
barrier dysfunction, and apoptosis. Bacterial homologs
of TTL are predicted to form peptide tags. Some of these
are fused to a 2-oxoglutarate Fe(II)-dependent
dioxygenase domain.
Length = 291
Score = 260 bits (666), Expect = 2e-81
Identities = 109/285 (38%), Positives = 168/285 (58%), Gaps = 13/285 (4%)
Query: 91 RMKRFQRTNHFPLIMELCRKNLLAKNLNQMKIQYPNDYNFFPQTWILPRDNRE-VHAFLT 149
Q NHFP E+ RK+LL KN+ + + ++F P+T+ILP D E V F
Sbjct: 4 DEPYHQALNHFPGSYEITRKDLLWKNIKRQPCDFGRKFDFLPRTFILPTDLAEFVDYFED 63
Query: 150 SKKATVIVKPDNGSNGLGISLIRNLRHLSQ-EQNRNYICQEYIANPFLIDGLKFDMRVYT 208
+++ T IVKP + G GI + +L + + Q+R + Q+YI P LIDG KFD+R+Y
Sbjct: 64 NERNTWIVKPSASARGRGIRITNDLSQILKQIQSRPLVVQKYIERPLLIDGRKFDIRLYV 123
Query: 209 LITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVNKHSISFIHDEEVGS 268
L+TS +P+R+YV+++G++RFA+VKY P +L + MHLTNYS+ K S S D +
Sbjct: 124 LVTSVNPLRVYVYREGLLRFASVKYS-PSVSDLDDVEMHLTNYSIQKKSSSLNEDYNEPN 182
Query: 269 KRKISTINQWFCRMGYDTDLVWSRIDDVIVKTVLSA--HPNIKTMYNSVFPRHNYMTACF 326
K S N W D + +W I+ +I+KT+L+A + + P +N CF
Sbjct: 183 GHKWSLFNFWKYLEEKDKEEIWLEIESIIIKTILAAEVEASRLNVQ----PLYN----CF 234
Query: 327 QLLGFDILLDDTLNPYVLEVNHSPSFYTDTEIDVEIKEQVLRDTF 371
+L GFD ++D+ L P++LEVN SPS ++ T++D +KEQ++ D
Sbjct: 235 ELYGFDFMIDENLKPWLLEVNASPSLHSTTKLDARLKEQLIDDVL 279
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 51.5 bits (122), Expect = 8e-07
Identities = 50/156 (32%), Positives = 64/156 (41%), Gaps = 16/156 (10%)
Query: 525 QTKRKVETPRDSYNRKDVEDKA--KQLNVPKVLVDDKPKPAIQVKVP--------KIAQK 574
Q RK E R+ R+D A KQ K K + + P K A
Sbjct: 176 QELRKREKDRERARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAP 235
Query: 575 PAKK---PVKPTHVPLKPANSP-KPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKL 630
PAK P K P K A P K + PAKAA PAK+ + PAK AK A +K
Sbjct: 236 PAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKA 295
Query: 631 VTIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPAE 666
P+K+ P K A A + + P +A PA+
Sbjct: 296 AAAPAKAAAA-PAKAAAAPA-KAAAPPAKAAAPPAK 329
Score = 47.3 bits (111), Expect = 2e-05
Identities = 39/108 (36%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 562 PAIQVKVP-KIAQKPAKK---PVKPTHVPLKPANSP-KPTSVPAKAANIPAKSTSIPAKP 616
PA P K A PAK P K P K A P K + PAKAA PAK+ + PAK
Sbjct: 243 PAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKA 302
Query: 617 TNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDP 664
AK A +K P+K+ P P K A + + P +A P
Sbjct: 303 AAAPAKAAAAPAKAAAPPAKAAAP-PAKAATPPA-KAAAPPAKAAAAP 348
Score = 44.6 bits (104), Expect = 1e-04
Identities = 35/93 (37%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 562 PAIQVKVP-KIAQKPAKK---PVKPTHVPLKPANSP-KPTSVPAKAANIPAKSTSIPAKP 616
PA P K A PAK P K P K A +P K + PAKAA PAK+ + PAK
Sbjct: 264 PAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKA 323
Query: 617 TNNSAKPANIISKLVTIPSKSVNPKPTKPAVAK 649
AK A +K P+K+ K A K
Sbjct: 324 AAPPAKAATPPAKAAAPPAKAAAAPVGKKAGGK 356
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 44.9 bits (106), Expect = 1e-04
Identities = 34/141 (24%), Positives = 45/141 (31%), Gaps = 11/141 (7%)
Query: 521 VKPVQTKRKVETP--RDSYNRKDVEDKAKQLNVPKVLVDDKPKPAIQVKVPKIAQKPAKK 578
V K+ +TP + + + K+ V K A K A K A K
Sbjct: 194 VGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSA------KKAAKTAAK 247
Query: 579 PVKPTHVPLKPANSPKPTSV---PAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIPS 635
K K A +V KAA AK+ AK T AK K S
Sbjct: 248 AAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGS 307
Query: 636 KSVNPKPTKPAVAKGQRRSKA 656
K+ AKG++ K
Sbjct: 308 KAKATAKAPKRGAKGKKAKKV 328
Score = 36.8 bits (85), Expect = 0.033
Identities = 26/126 (20%), Positives = 38/126 (30%), Gaps = 6/126 (4%)
Query: 556 VDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAK 615
+ K + AK V K A T+V AK A A + AK
Sbjct: 197 ANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAK---TAVSAKKAAKTAAKAAKKAK 253
Query: 616 PT--NNSAKPANIISKLVTIPSKSVNPKPTKPAVA-KGQRRSKAPPEANIDPAEEIHRLT 672
T K A + K +K+ A A KG+ ++K +
Sbjct: 254 KTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATA 313
Query: 673 EWKKRV 678
+ KR
Sbjct: 314 KAPKRG 319
Score = 35.2 bits (81), Expect = 0.095
Identities = 33/156 (21%), Positives = 48/156 (30%), Gaps = 22/156 (14%)
Query: 499 RKPGDDVALMKKPSVRTNKTKVVKPVQTKRKVETPRDSYNRKDVEDKAKQLNVPKVLVDD 558
A + K K +KV + + + AK
Sbjct: 195 GAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKK 254
Query: 559 KPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTN 618
K A++ K K +K AKK K AKAA AK+T AK
Sbjct: 255 TAKKALK-KAAKAVKKAAKKAAKA----------------AAKAAKGAAKATKGKAKAKK 297
Query: 619 NSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRS 654
+ K A SK +K+ P + A K ++
Sbjct: 298 KAGKKAAAGSK-----AKATAKAPKRGAKGKKAKKV 328
Score = 34.1 bits (78), Expect = 0.23
Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 3/115 (2%)
Query: 544 DKAKQLNVPKVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAA 603
+K K L V ++ D+ I + + AKK K K + A
Sbjct: 167 EKRKLLTVDGMMTIDEVTREIGRVLAAVGAANAKKAAKTP--AAKSGAKKASAKAKSAAK 224
Query: 604 NIPAKSTSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPP 658
+ K + A +AK A +K +K K AV K +++
Sbjct: 225 KVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKK-ALKKAAKAVKKAAKKAAKAA 278
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 40.5 bits (95), Expect = 0.002
Identities = 27/139 (19%), Positives = 42/139 (30%), Gaps = 15/139 (10%)
Query: 515 TNKTKVVKPVQTKRKVETPRDSYNRKDVEDKAKQLNVPKVLVDDKPKPAIQVKVPKIAQK 574
T + + ++ + K PK + KP PK K
Sbjct: 53 TEEPQPEPEPPEEQPKPPTEPETPPEPTPPK------PKEKPKPEKKPKKPKPKPKPKPK 106
Query: 575 PAKKPVKPTHVPLKPANSPKPTSVPAKAA-NIPAKSTSIPAKPTNNSAKPANIISKLVTI 633
P K VKP P KP + + A P + S T SA + + +
Sbjct: 107 PKPK-VKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRA--- 162
Query: 634 PSKSVNPKPTKPAVAKGQR 652
+ P PA A+ +
Sbjct: 163 ----IRRAPRYPAQARARG 177
Score = 34.8 bits (80), Expect = 0.12
Identities = 23/127 (18%), Positives = 33/127 (25%), Gaps = 14/127 (11%)
Query: 542 VEDKAKQLNVPKVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAK 601
V + L V + P + + + KP P +P PKP P
Sbjct: 32 VGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTP-PKPKEKPKP 90
Query: 602 AANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQR---RSKAPP 658
P K P K P P+K A ++ P
Sbjct: 91 EKK-PKKPKPKPKPKPKPKPKVK---------PQPKPKKPPSKTAAKAPAAPNQPARPPS 140
Query: 659 EANIDPA 665
A+ A
Sbjct: 141 AASASGA 147
Score = 29.8 bits (67), Expect = 4.3
Identities = 19/105 (18%), Positives = 25/105 (23%), Gaps = 1/105 (0%)
Query: 563 AIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAK 622
Q I P + V P P+P P + P P +PT K
Sbjct: 26 LHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPK 85
Query: 623 PANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPAEE 667
K P K KP + P +
Sbjct: 86 EKPKPEKKPKKP-KPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
>gnl|CDD|222206 pfam13535, ATP-grasp_4, ATP-grasp domain. This family includes a
diverse set of enzymes that possess ATP-dependent
carboxylate-amine ligase activity.
Length = 183
Score = 39.6 bits (93), Expect = 0.002
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 135 WILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRN----LRHLSQ-----EQNRNY 185
+ L D ++ A V++KP +G+ LG+ + + L+ E R Y
Sbjct: 22 FFLVDDEEDLDAAAEEIGFPVVLKPRDGAGSLGVFRVDSAAELEAALAALAAEVEDTREY 81
Query: 186 ICQEYIANP-FLIDGLKFDMRVYTLITS 212
+ +EYI + +DGL D + L S
Sbjct: 82 LVEEYIDGDEYHVDGLVDDGELVFLGVS 109
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 39.7 bits (93), Expect = 0.005
Identities = 27/108 (25%), Positives = 35/108 (32%), Gaps = 5/108 (4%)
Query: 560 PKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNN 619
P Q P A P + PA AA A + PA
Sbjct: 391 AAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA-PVAAPAAAAPAAAP-AAAPAAVALA 448
Query: 620 SAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPAEE 667
A PA + V IP + V P+P + + AP A + P EE
Sbjct: 449 PAPPAQAAPETVAIPVR-VAPEP--AVASAAPAPAAAPAAARLTPTEE 493
Score = 36.2 bits (84), Expect = 0.058
Identities = 17/97 (17%), Positives = 23/97 (23%), Gaps = 10/97 (10%)
Query: 572 AQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLV 631
A KK PA +P + A A + + +A PA
Sbjct: 373 AAPAEKKTPARPEAAA-PAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA------- 424
Query: 632 TIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPAEEI 668
P + A A P A E
Sbjct: 425 --PVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPET 459
Score = 29.3 bits (66), Expect = 7.6
Identities = 14/80 (17%), Positives = 22/80 (27%), Gaps = 5/80 (6%)
Query: 588 KPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAV 647
KPA + + + K ++ + A P +A + P P
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAP-----APAAAPAAAASAPAAPPA 419
Query: 648 AKGQRRSKAPPEANIDPAEE 667
A AP A A
Sbjct: 420 AAPPAPVAAPAAAAPAAAPA 439
>gnl|CDD|237195 PRK12767, PRK12767, carbamoyl phosphate synthase-like protein;
Provisional.
Length = 326
Score = 38.7 bits (91), Expect = 0.008
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 128 YNFF-------PQTWILPRDNREVHAFLTSKKAT--VIVKPDNGSNGLGISLIRNLRHLS 178
Y F P+++ LP + A L + + VKP +GS +G+ + + L
Sbjct: 116 YEFLKENGIPTPKSY-LPESLEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKEELE 174
Query: 179 --QEQNRNYICQEYIA 192
E N I QE+I
Sbjct: 175 FLLEYVPNLIIQEFIE 190
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 38.7 bits (91), Expect = 0.013
Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 2/150 (1%)
Query: 542 VEDKAKQLNVPKVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAK 601
VE++ + K +++ K + A++ AK + A + A+
Sbjct: 38 VEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAAR 97
Query: 602 AANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEAN 661
A A + A + K A K KG + +
Sbjct: 98 PAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGRR 157
Query: 662 IDPAEEIHRLTEWK--KRVTFVESMDIKRL 689
++ + K + V E++ + L
Sbjct: 158 RRRKKKKKQKPTEKIPREVVIPETITVAEL 187
Score = 35.2 bits (82), Expect = 0.13
Identities = 21/144 (14%), Positives = 51/144 (35%), Gaps = 7/144 (4%)
Query: 540 KDVEDKAKQLNVPK------VLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSP 593
K++ +K K+L + V ++ K + + + A+ A++ +
Sbjct: 18 KELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAE-AEEEAKAEA 76
Query: 594 KPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRR 653
+ +AA A + + + +A+PA ++ + K KP K +R+
Sbjct: 77 AAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRK 136
Query: 654 SKAPPEANIDPAEEIHRLTEWKKR 677
+ + R ++R
Sbjct: 137 AARGGKRGKGGKGRRRRRGRRRRR 160
Score = 32.1 bits (74), Expect = 1.3
Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 1/123 (0%)
Query: 540 KDVEDKAKQLNVP-KVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSV 598
V + AK+L V K L++ + I+VK + + + + +
Sbjct: 4 VRVYELAKELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEA 63
Query: 599 PAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPP 658
A A AK+ + A P +A+ A A +++
Sbjct: 64 AAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKK 123
Query: 659 EAN 661
+
Sbjct: 124 KGP 126
Score = 30.6 bits (70), Expect = 3.9
Identities = 19/155 (12%), Positives = 41/155 (26%), Gaps = 3/155 (1%)
Query: 480 GVTPRPSKDTLDSIYGKKRRKPGDDVALMKKPSVRTNKTKVVKPVQTKRKVETPRDSYNR 539
G+ + T++ + R++ A + + + K + +
Sbjct: 28 GIEVKSHSSTVEE--EEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEA 85
Query: 540 KDVEDKAKQLNVPKVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVP 599
+ A+ P +P A + PK + KK + +
Sbjct: 86 AEAAAAAEAAARPAEDEAARPAEAAARR-PKAKKAAKKKKGPKPKKKKPKRKAARGGKRG 144
Query: 600 AKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIP 634
+ + KP I + V IP
Sbjct: 145 KGGKGRRRRRGRRRRRKKKKKQKPTEKIPREVVIP 179
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 38.3 bits (89), Expect = 0.016
Identities = 23/99 (23%), Positives = 32/99 (32%), Gaps = 7/99 (7%)
Query: 571 IAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKL 630
+ PA +P KPT P P P+ A + P +P +A P + +
Sbjct: 360 LVPVPAPQPAKPT-AAAPSPVRPTPA--PSTRPKAAAAANIPPKEPVRETATPPPVPPRP 416
Query: 631 VTIPSKSVNP--KPTKPAVAKGQRRSKAPPEANIDPAEE 667
V P A + K P A P EE
Sbjct: 417 VAPPVPHTPESAPKLTRAAIPVDEKPKYTPPA--PPKEE 453
Score = 35.9 bits (83), Expect = 0.073
Identities = 26/113 (23%), Positives = 36/113 (31%), Gaps = 8/113 (7%)
Query: 560 PKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAAN----IPAKSTSIPAK 615
P PA Q P A PV+PT P + ++P K P P
Sbjct: 362 PVPAPQ---PAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVA 418
Query: 616 PTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPAEEI 668
P + IP PK T PA K + ++ ++ E I
Sbjct: 419 PPVPHTPESAPKLTRAAIPVD-EKPKYTPPAPPKEEEKALIADGDVLEQLEAI 470
Score = 33.2 bits (76), Expect = 0.56
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 556 VDDKPKPAIQVKVPKIAQKPAKKPVK----PTHVPLKPANSPKPTSVPAKAANIPAKSTS 611
V P P+ + K A P K+PV+ P VP +P P P P A + +
Sbjct: 379 VRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH-TPESAPKLTRAAIP 437
Query: 612 IPAKPTNNSAKP 623
+ KP P
Sbjct: 438 VDEKPKYTPPAP 449
Score = 30.2 bits (68), Expect = 5.0
Identities = 13/87 (14%), Positives = 18/87 (20%), Gaps = 4/87 (4%)
Query: 539 RKDVEDKAKQLNVPKVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSV 598
V PK P V+ +PV P + +
Sbjct: 376 PSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRA- 434
Query: 599 PAKAANIPAKSTSIPAKPTNNSAKPAN 625
A + K P P K
Sbjct: 435 ---AIPVDEKPKYTPPAPPKEEEKALI 458
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 37.2 bits (86), Expect = 0.033
Identities = 23/105 (21%), Positives = 29/105 (27%), Gaps = 3/105 (2%)
Query: 562 PAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSA 621
PA P PA P PA P + AA + PA+ +
Sbjct: 374 PATAAAAPVAQPAPAAAA--PAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431
Query: 622 KPANIISKLVTIPSKSVNPKPTKPAV-AKGQRRSKAPPEANIDPA 665
A P + P P A A R + A P A
Sbjct: 432 ALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAA 476
Score = 33.3 bits (76), Expect = 0.49
Identities = 23/109 (21%), Positives = 29/109 (26%), Gaps = 3/109 (2%)
Query: 560 PKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNN 619
P PA P A A P + SP P ++ A PA
Sbjct: 397 PAPAAPPAAPAAAPAAAAAARAVAAAPARR--SPAPEALAAARQASARGPGGAPAPAPAP 454
Query: 620 SAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPAEEI 668
+A PA P PA A + P EE+
Sbjct: 455 AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDD-PPPWEEL 502
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 36.2 bits (84), Expect = 0.037
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 551 VPKVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKST 610
V + KPKP PK KP KK + +KP P+P S P + PA+ T
Sbjct: 90 VVIPKPEPKPKP-----KPKPKPKPVKKVEEQPKREVKPV-EPRPAS-PFENTA-PARPT 141
Query: 611 SIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAK 649
+ T ++KP +S S++ +P PA A+
Sbjct: 142 --SSTATAAASKPVTSVSSGPRALSRN---QPQYPARAQ 175
Score = 32.3 bits (74), Expect = 0.76
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 10/114 (8%)
Query: 552 PKVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPL-----KPANSPKPTSVPAKAANIP 606
P V P+P V P+ +P +P K V + KP PKP P K
Sbjct: 60 PPQAVQPPPEP---VVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQ 116
Query: 607 AKSTSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRR-SKAPPE 659
K P +P S ++ + + + KP +V+ G R S+ P+
Sbjct: 117 PKREVKPVEPRPASPFENTAPARPTSSTATAAASKPV-TSVSSGPRALSRNQPQ 169
>gnl|CDD|216172 pfam00884, Sulfatase, Sulfatase.
Length = 332
Score = 36.7 bits (85), Expect = 0.039
Identities = 23/137 (16%), Positives = 41/137 (29%), Gaps = 33/137 (24%)
Query: 241 LTNKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKT 300
LT H V+ +G R ++ R GY+T +
Sbjct: 57 LTGLPPHNFGSGVS---------TPIGLPRTEPSLPDLLKRAGYNTGAI----------- 96
Query: 301 VLSAHPNIKTMYN--SVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEI 358
+ YN SV+ + G + D +P + N S +D +
Sbjct: 97 ----GKWHLSWYNRQSVYKNLGFDKFF----GRNTGEDLYKDPEDVGYNCSGGGVSDEAL 148
Query: 359 -D--VEIKEQVLRDTFI 372
D +E + + F+
Sbjct: 149 LDEALEFLDNNDKPFFL 165
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 37.2 bits (86), Expect = 0.039
Identities = 29/124 (23%), Positives = 43/124 (34%), Gaps = 15/124 (12%)
Query: 560 PKPAIQVKVPKIAQKPAKKPV--------KPTHVPLKPANSPKPTSVPAKAANIPAKSTS 611
PK A + + + A P + PA+ P P P A+ P +T
Sbjct: 375 PKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATP 434
Query: 612 IPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAK-----GQRRSKAPPEANIDPAE 666
+P+ + PA + P+ P A K +RR PP A D AE
Sbjct: 435 LPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPEPPGA--DLAE 492
Query: 667 EIHR 670
+ R
Sbjct: 493 LLGR 496
Score = 35.7 bits (82), Expect = 0.12
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 575 PAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIP 634
P +P L A P A+ A+ + P A P ++ P
Sbjct: 2703 PPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGP-ARPARPP 2761
Query: 635 SKSVNPKPTKPA--VAKGQRRSKAPPEANIDPAEE 667
+ + P P PA A RR P A++ + E
Sbjct: 2762 TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRE 2796
Score = 33.4 bits (76), Expect = 0.54
Identities = 24/117 (20%), Positives = 36/117 (30%), Gaps = 11/117 (9%)
Query: 560 PKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKP--TSVPAKAANIP-------AKST 610
A +P A P + P P P P S+P + P S
Sbjct: 2810 AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSR 2869
Query: 611 SIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPAEE 667
S AKP + P +++ S+S P + + +APP P
Sbjct: 2870 SPAAKPAAPARPPVRRLAR--PAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPP 2924
Score = 33.4 bits (76), Expect = 0.60
Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 11/115 (9%)
Query: 560 PKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNN 619
+PA+ P+ + + P + + A +P +++ P P
Sbjct: 2784 TRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPA-ASPAGPLPPPTSAQPTAPPPP 2842
Query: 620 SAKPANIISKLVTI----------PSKSVNPKPTKPAVAKGQRRSKAPPEANIDP 664
P + ++ PS+S KP PA +R ++ + +
Sbjct: 2843 PGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTES 2897
Score = 33.0 bits (75), Expect = 0.78
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 18/142 (12%)
Query: 523 PVQTKRKVETPRDSYNRKD--VEDKAKQLNVPKVLVDDKPKPAIQVKVPKIAQKPAKKPV 580
P R V PR + + V +A++ + P P+ A + + P + + P
Sbjct: 2561 PAAPDRSVPPPRPAPRPSEPAVTSRARRPDAP-------PQSA-RPRAPVDDRGDPRGPA 2612
Query: 581 KPTHVPLKPANSPKPTSVPAKAANIP----AKSTSIPAKPTNNSAKPANIISKLVTIPSK 636
P+ +P P P+ AAN P + P +P ++ A + +
Sbjct: 2613 PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGR 2672
Query: 637 SVNPKPTKPAVAKGQRRSKAPP 658
+ + + P + RR A P
Sbjct: 2673 A--AQASSP--PQRPRRRAARP 2690
Score = 32.2 bits (73), Expect = 1.2
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 9/96 (9%)
Query: 572 AQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLV 631
++ PA KP P P++ P + A P P + P
Sbjct: 2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPP---DQPERPPQPQAPPPPQ------ 2918
Query: 632 TIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPAEE 667
P P+P P + + P + A E
Sbjct: 2919 PQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGE 2954
Score = 31.8 bits (72), Expect = 1.6
Identities = 35/174 (20%), Positives = 55/174 (31%), Gaps = 24/174 (13%)
Query: 501 PGDDVALMKKPSVRTNKTKVVKPVQTKRKVETPRDSYNRKDVEDKAKQLNVPKVLVDDKP 560
PG DV ++P R+ K P + P R V + +P + P
Sbjct: 2858 PGGDVR--RRPPSRSPAAKPAAPARP------PVRRLARPAVSRSTESFALPPDQPERPP 2909
Query: 561 KPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNS 620
+P P Q P +P P P P + A S ++P P +
Sbjct: 2910 QPQAPP--PPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQ-PWLGA 2966
Query: 621 AKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPAEEIHRLTEW 674
P + +P P P++ A A S P + R++ W
Sbjct: 2967 LVPGRVAVPRFRVPQ----PAPSREAPAS----STPPLTGHSLS-----RVSSW 3007
Score = 30.7 bits (69), Expect = 4.1
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 613 PAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEAN 661
P P +A PA + ++P P+P++PAV RR APP++
Sbjct: 2551 PPPPLPPAAPPA---APDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSA 2596
Score = 30.7 bits (69), Expect = 4.3
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 562 PAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSA 621
P ++ P +A + P+ P PA+ P V A AA +P ++ P SA
Sbjct: 2779 PPRRLTRPAVASLSESRESLPS--PWDPADPPAA--VLAPAAALPPAASPAGPLPPPTSA 2834
Query: 622 KPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPP 658
+P P P +VA G + PP
Sbjct: 2835 QPT----APPPPPGPPPPSLPLGGSVAPGGDVRRRPP 2867
Score = 30.3 bits (68), Expect = 4.5
Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 12/119 (10%)
Query: 562 PAIQVKVPKIAQKPAKK-PVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNS 620
PA + A+ P P P A P+ + PA A+ ++ S+P+ P + +
Sbjct: 2748 PATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRE-SLPS-PWDPA 2805
Query: 621 AKPANIISKLVTIPSKS---------VNPKPTKPAVAKGQRRSKAPPEANIDPAEEIHR 670
PA +++ +P + + +PT P G P ++ P ++ R
Sbjct: 2806 DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRR 2864
Score = 30.3 bits (68), Expect = 5.4
Identities = 33/184 (17%), Positives = 51/184 (27%), Gaps = 10/184 (5%)
Query: 483 PRPSKDTLDSIYGKKRRKPGDDVALMKKPSVRTNKTKVVKPVQTKRKVETPRDSYNRKDV 542
P ++ + D + S ++ + Q + PR R V
Sbjct: 2633 PAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTV 2692
Query: 543 EDKAKQLNVPKVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKA 602
+ P +P P V + PA +P PA P
Sbjct: 2693 GSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPG 2752
Query: 603 ANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANI 662
A P A PA P+ + T+PAVA ++ P
Sbjct: 2753 GPARPARPPTTAGPP-APAPPA--------APAAGPPRRLTRPAVASLSESRESLPSPW- 2802
Query: 663 DPAE 666
DPA+
Sbjct: 2803 DPAD 2806
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 36.9 bits (86), Expect = 0.040
Identities = 19/72 (26%), Positives = 23/72 (31%), Gaps = 10/72 (13%)
Query: 565 QVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPA----------KAANIPAKSTSIPA 614
K P QK P +P A +P PT P A IPA S+ P
Sbjct: 520 TAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPP 579
Query: 615 KPTNNSAKPANI 626
P + P
Sbjct: 580 IPEEPTPSPTKD 591
Score = 36.5 bits (85), Expect = 0.057
Identities = 16/87 (18%), Positives = 23/87 (26%), Gaps = 1/87 (1%)
Query: 591 NSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKG 650
S + + +A P+ P A + T PS V
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420
Query: 651 QRRSKAPPEANIDPAEEIHRLTE-WKK 676
P AN A L E W++
Sbjct: 421 PTEPSPTPPANAANAPPSLNLEELWQQ 447
Score = 32.2 bits (74), Expect = 0.96
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 4/65 (6%)
Query: 559 KPKPAIQVKVPKIAQKPAKKPVKP-THVPLKPANS---PKPTSVPAKAANIPAKSTSIPA 614
P PA P +P+ K P P P P + + + A
Sbjct: 376 NPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANA 435
Query: 615 KPTNN 619
P+ N
Sbjct: 436 PPSLN 440
>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein
UL32. The large phosphorylated protein (UL32-like) of
herpes viruses is the polypeptide most frequently
reactive in immuno-blotting analyses with antisera when
compared with other viral proteins.
Length = 777
Score = 36.8 bits (85), Expect = 0.040
Identities = 35/240 (14%), Positives = 60/240 (25%), Gaps = 27/240 (11%)
Query: 447 ESASYYKDTFSSNMRSMLGRAHRQDIDMRRDNHGVTPRPSKDTLDSIYGKKRRKPGDDVA 506
AS +D SS+ S++ + + P K I P +
Sbjct: 504 GGASGREDETSSDAESVVSIKELRPRIGFINKSPPPKSPPKSRRTLIVALSLASPSTAGS 563
Query: 507 LMKKPSVRTNKTKVVKPVQTKRKVETPRDSYNRKDVEDKAKQLNVPKVLVDDKPKPAIQV 566
KPS+ K + T R + N + + KPK +
Sbjct: 564 PRPKPSLG--KFVIGTDPFA--FANTVRLTDNMRGGNGVGSSV---------KPKGSA-- 608
Query: 567 KVPKIAQKPAKKPVKPTHVPLKPAN-SPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPAN 625
+ LKPA + K S A A ++S P+ +
Sbjct: 609 -------SSKPLTGPGS--DLKPATLNGKTPSSSLVGAARNAGASSKVKIPSGLGGFTSP 659
Query: 626 IISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPAEEIHRLTEWKKRVTFVESMD 685
I + + + P K E T+ + +
Sbjct: 660 ISLL-ESALEDVLTSATSTPVK-KNDPYLWDTNGEKAGGGTESASTTDVFQNFAGLNKKT 717
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The function
is unclear.
Length = 151
Score = 35.3 bits (81), Expect = 0.041
Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 8/141 (5%)
Query: 509 KKPSVRTNKTKVVKPVQTKRKVETPRDSYNRKDVEDKAKQLNVPKVLVDDKPKPAIQVKV 568
K S +++K K K + K K + + N K E + Q V +V V + +P V V
Sbjct: 19 KTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGKIPEHEPNQ-EVTEVEVIIEKEPVPAVAV 77
Query: 569 PKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIIS 628
+ V P +P S + T+ P K+ P+ K AK +
Sbjct: 78 APVPVAVVAPVVAPKPKKSQPVMSQEKTASPQKSVPAPSPKEKKKKKV----AKVEPAPA 133
Query: 629 KLVTIPSKSVNPKPTKPAVAK 649
K V +P V + P A
Sbjct: 134 KAVAVP---VLASKSAPVPAT 151
>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 226
Score = 36.0 bits (83), Expect = 0.043
Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 12/146 (8%)
Query: 495 GKKRRKPGDDVALMKKPSVRTNKTKV---VKPVQTKRKVETPRDSYNRKDVED-KAKQLN 550
GKK+ + + A+ P + ++ + VQ P + ++ + A +
Sbjct: 29 GKKKHRQDEVAAIPLPPKPQGDRDEPRVLPAVVQVVALPTQPPEGVAQEIQDAGDAAAAS 88
Query: 551 VPKVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAK------AAN 604
V V P + VP AQ P KPVKP P A KPT P AA
Sbjct: 89 VDPQPVAQPPVESTPAGVPVAAQTP--KPVKPPKQPPAGAVPAKPTPKPEPKPVAEPAAA 146
Query: 605 IPAKSTSIPAKPTNNSAKPANIISKL 630
++ + N+ + +++KL
Sbjct: 147 PTGQAFVVQLGALKNADRANELVAKL 172
Score = 31.8 bits (72), Expect = 1.0
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 7/77 (9%)
Query: 563 AIQVKVPKIAQKPAKKP---VKPTHVPL---KPANSPKPTSVPAKAANIPAKSTSIPAKP 616
A + +P +P P VP+ P KP P A + KP
Sbjct: 81 AGDAAAASVDPQPVAQPPVESTPAGVPVAAQTPK-PVKPPKQPPAGAVPAKPTPKPEPKP 139
Query: 617 TNNSAKPANIISKLVTI 633
A + +V +
Sbjct: 140 VAEPAAAPTGQAFVVQL 156
Score = 30.6 bits (69), Expect = 2.5
Identities = 25/116 (21%), Positives = 36/116 (31%), Gaps = 11/116 (9%)
Query: 558 DKPKPAIQVKV--PKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAA-----NIPAKST 610
D K Q +V + KP +P +P PT P A A +
Sbjct: 28 DGKKKHRQDEVAAIPLPPKPQGDRDEPRVLPAVVQVVALPTQPPEGVAQEIQDAGDAAAA 87
Query: 611 SIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPAE 666
S+ +P + S +P + PKP KP A P +P
Sbjct: 88 SVDPQPV----AQPPVESTPAGVPVAAQTPKPVKPPKQPPAGAVPAKPTPKPEPKP 139
>gnl|CDD|183536 PRK12458, PRK12458, glutathione synthetase; Provisional.
Length = 338
Score = 36.2 bits (84), Expect = 0.048
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 113 LAKNLNQMKIQYPNDYNFFPQTWILPRDNREVHAFL-TSKKATVIVKPDNGSNGLGISLI 171
L N++ Q + P T + R+ + FL S +I+KP GS G G+ LI
Sbjct: 124 LRIANNKLYFQSFPE-EVRPTT-HISRNKEYIREFLEESPGDKMILKPLQGSGGQGVFLI 181
Query: 172 RNLRHLSQEQNRN-----YICQEY-IANPFLIDGLKFDMRVYTL 209
S + N N Y Y IA +L + D+R+ L
Sbjct: 182 EK----SAQSNLNQILEFYSGDGYVIAQEYLPGAEEGDVRILLL 221
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 35.6 bits (82), Expect = 0.054
Identities = 30/102 (29%), Positives = 38/102 (37%), Gaps = 6/102 (5%)
Query: 563 AIQVKVPKIAQKPAK--KPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTS--IPAKPTN 618
A + P KPA+ PV+P +P P P P PA AA + + PAKP
Sbjct: 99 ATSMSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRA 158
Query: 619 NSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEA 660
S +PA + T K K A A K A
Sbjct: 159 KSPRPAAKAAPKPT--ETITAKKAKKTAAAPKPTADKTATPA 198
Score = 33.2 bits (76), Expect = 0.32
Identities = 20/96 (20%), Positives = 26/96 (27%), Gaps = 13/96 (13%)
Query: 560 PKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNN 619
P+ V VP A A P KP + + A KPT
Sbjct: 124 PETPPAVPVPAPAPAVA---AAAAQAAAAPKAPAKPRAKSPRPA------AKAAPKPTET 174
Query: 620 SAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSK 655
+K K K PA K ++ K
Sbjct: 175 ITAKK---AKKTAAAPKPTADKTATPA-KKTTKKKK 206
>gnl|CDD|223267 COG0189, RimK, Glutathione synthase/Ribosomal protein S6
modification enzyme (glutaminyl transferase) [Coenzyme
metabolism / Translation, ribosomal structure and
biogenesis].
Length = 318
Score = 35.8 bits (83), Expect = 0.063
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 155 VIVKPDNGSNGLGISLIR----NLRH----LSQEQNRNYICQEYIANPF 195
V++KP +GS G G+ L+ L L+QE + I QEYI
Sbjct: 158 VVLKPLDGSGGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAK 206
Score = 32.7 bits (75), Expect = 0.54
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 328 LLGFDILLDDTLNPYVLEVNHSPSF------YTDTEIDVEIKE 364
L+G DI+ D YV EVN SP+ T I I +
Sbjct: 268 LVGVDIIEDKD-GLYVTEVNVSPTGKGEIERVTGVNIAGLIID 309
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 35.7 bits (82), Expect = 0.078
Identities = 25/117 (21%), Positives = 37/117 (31%), Gaps = 14/117 (11%)
Query: 556 VDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAK 615
D PA+ + P++ P P P A SP+ T P+ + P +T
Sbjct: 182 ADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTA-SPETTPTPSTTTS-PPSTTIPAPS 239
Query: 616 PTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPAEEIHRLT 672
T + + T P P P P + P A P + LT
Sbjct: 240 TTIAAPQAG-------TTPEAEGTPAPPTPGGGE-----APPANATPAPEASRYELT 284
Score = 30.7 bits (69), Expect = 3.2
Identities = 18/95 (18%), Positives = 26/95 (27%), Gaps = 2/95 (2%)
Query: 531 ETPRDSYNRKDVEDKAKQLNVPKVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPA 590
E D + A +L V V P+P + P +
Sbjct: 179 EGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTPSTTTSPPSTTIPAP 238
Query: 591 NSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPAN 625
++ P A+ T P P A PAN
Sbjct: 239 STTIAA--PQAGTTPEAEGTPAPPTPGGGEAPPAN 271
>gnl|CDD|219392 pfam07382, HC2, Histone H1-like nucleoprotein HC2. This family
contains the bacterial histone H1-like nucleoprotein HC2
(approximately 200 residues long), which seems to be
found mostly in Chlamydia. HC2 functions in DNA
condensation, although it has been suggested that it
also has other roles.
Length = 187
Score = 34.4 bits (78), Expect = 0.11
Identities = 34/145 (23%), Positives = 42/145 (28%), Gaps = 11/145 (7%)
Query: 499 RKPGDDVALMKKPSVRTNKTKVVKPV--QTKRKVETPRDSYNRKDVEDKAKQLNVPKVLV 556
RKP A KK VR K KP +T K K KA V
Sbjct: 21 RKPAAKKAAAKKTVVR--KVAAKKPAARKTVAKKTVAAKKPAAKKAAKKAVAKKVVAKKP 78
Query: 557 DDKPKPAIQVKVPKIAQK-------PAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKS 609
K A + K+A K AKK K PA + K+
Sbjct: 79 VAKKAVAKKATAKKVAAKKVVAKKTVAKKAAAKKPAAKKAVAKKAVARKPAAKKAVAKKA 138
Query: 610 TSIPAKPTNNSAKPANIISKLVTIP 634
S K ++A + S T
Sbjct: 139 ASTCHKNHKHTAACKRVASSSATRA 163
>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional.
Length = 400
Score = 35.2 bits (81), Expect = 0.13
Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 19/138 (13%)
Query: 531 ETPRDSYNRK-----DVEDKAKQLNVPKVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHV 585
E + YN D+ D K+++ +V + + P A +P +
Sbjct: 200 EAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAA 259
Query: 586 PLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKP 645
PA +PK + AKA ++ + A + KP
Sbjct: 260 LKTPATAPKAAAKNAKA----PEAQPVSGTAAAEPAPKEAAKAA----------AAAAKP 305
Query: 646 AVAKGQRRSKAPPEANID 663
A+ R D
Sbjct: 306 ALEDKPRPLGIARPGGAD 323
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional.
Length = 226
Score = 34.2 bits (79), Expect = 0.15
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 16/101 (15%)
Query: 560 PKPAIQVKV-PKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPT- 617
P V+ P + P KPV+ KP + P + + P
Sbjct: 91 APPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAPTGKAY 150
Query: 618 -------NNSAKPANIISKL-------VTIPSKSVNPKPTK 644
N+ K I++KL T+PS V K T+
Sbjct: 151 VVQLGALKNADKVNEIVAKLRLSGYRVYTVPSTPVQGKITR 191
Score = 29.2 bits (66), Expect = 6.6
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 552 PKVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKP 595
P + KPKP + K Q+ + P P P KP K
Sbjct: 101 PAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEP-KPVVEEKA 143
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 34.5 bits (79), Expect = 0.18
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 560 PKPAIQVKV--PKIAQKPAKKPVKPTHVPLK---PANSPKPTSVPAKAANIPAKSTSIP- 613
+PA + V PK Q AK KP K PA T PA + K T+
Sbjct: 154 TRPARKQAVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTA 213
Query: 614 ----AKPTNNSAKPA 624
A P +A PA
Sbjct: 214 PVQTASPAQTTATPA 228
>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed.
Length = 413
Score = 34.1 bits (78), Expect = 0.23
Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
Query: 568 VPKIAQKP--AKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPA-KPTNNSAKPA 624
V A K A KP KPA+ P KAA PA++ A KP +A PA
Sbjct: 307 VETAADKGERAAKPAAADKAADKPADRP---DAAEKAAEKPAEAAPRAADKPAGQAADPA 363
Query: 625 NIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDP 664
S P S + PA A R A P+A+ P
Sbjct: 364 ---SSSADKPGASADAAARTPARA----RDAAAPDADTPP 396
Score = 32.2 bits (73), Expect = 1.1
Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 8/107 (7%)
Query: 562 PAIQVKVPKIAQKPAKKPV---KPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTN 618
PA A++PA P+ + HV + PA A K P
Sbjct: 281 PAATAAAAAPAEEPAVAPMAAIRAAHVETAADKGERAAK-PAAADKAADKPADRPDAAEK 339
Query: 619 NSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPA 665
+ KPA + P+ + PA + + + A PA
Sbjct: 340 AAEKPAEAAPRAADKPAG----QAADPASSSADKPGASADAAARTPA 382
>gnl|CDD|234948 PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.
Length = 304
Score = 33.9 bits (79), Expect = 0.24
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 324 ACFQLLG------FDILLDDTLNPYVLEVNHSP 350
++ LG D +LD+ PY+LEVN P
Sbjct: 238 KAYRALGCRGWGRVDFMLDEDGKPYLLEVNTQP 270
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 34.1 bits (78), Expect = 0.29
Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 22/111 (19%)
Query: 107 LCR-KNLLAKNLNQMKIQYPNDYNFFPQTWILPRDNREVHAFLTSKKATVIVKPDNGSNG 165
CR K LA+ L I P +T L L V+VKP GS
Sbjct: 104 TCRDKKRLARTLRDHGIDVP-------RTHALALR-AVALDALDGLTYPVVVKPRMGSGS 155
Query: 166 LGISLIRN----LRH---LSQEQNRNYICQEYIANPFLIDGLKFDMRVYTL 209
+G+ L + H L + R + Q Y ++G ++ + T+
Sbjct: 156 VGVRLCASVAEAAAHCAALRRAGTRAALVQAY------VEGDEYSVETLTV 200
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 33.9 bits (77), Expect = 0.35
Identities = 35/190 (18%), Positives = 76/190 (40%), Gaps = 18/190 (9%)
Query: 496 KKRRKPGDDVALMKKPSVRTNKTKVVK----PVQTKRKVETPRDSYNRKDVEDKAKQLNV 551
++R KP D ++ + + +KT+ + P + + + E +S + + V ++ +
Sbjct: 82 RQREKPASDTEEPERVTAKKSKTQELSRPNSPSEGEGEGEGEGESSDSRSVNEEGS--SD 139
Query: 552 PKVLVDDKPKPAIQVKVPK--------IAQKPAKKPVKPTHVPLKPANSPKPT--SVPAK 601
PK + D + + P+ AQ+ +P P + + P + P+
Sbjct: 140 PKDIDQDNRSSSPSIPSPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPS 199
Query: 602 AANIPAKSTSIPAKPTNNSAKPAN--IISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPE 659
A +P + + I A+P +P+ +IS P + +P P Q+ + P
Sbjct: 200 AQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAP 259
Query: 660 ANIDPAEEIH 669
++ P H
Sbjct: 260 SSRHPQSSHH 269
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 33.7 bits (77), Expect = 0.42
Identities = 31/189 (16%), Positives = 60/189 (31%), Gaps = 20/189 (10%)
Query: 488 DTLDSIYGKKRRKPGDDVALMKKPSVRTNKTKVVKPVQTKRKVETPRDSYNRKDVEDKAK 547
D LD K+ K + +++ + R K + K P+ +K E +
Sbjct: 1166 DKLD----KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKK-TTKKASESETT 1220
Query: 548 QLNVPKVLVDD-------KPKPAIQVKVPKIAQKPAKKPVKPTHV---PLKPA-NSPKPT 596
+ ++ KPK + + PA K LK +
Sbjct: 1221 EETYGSSAMETENVAEVVKPKG----RAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLD 1276
Query: 597 SVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKA 656
S PA++A + ++PA+ KP +S + + + +++
Sbjct: 1277 SAPAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGR 1336
Query: 657 PPEANIDPA 665
P A A
Sbjct: 1337 KPAAANKKA 1345
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 33.4 bits (76), Expect = 0.47
Identities = 42/184 (22%), Positives = 59/184 (32%), Gaps = 33/184 (17%)
Query: 507 LMKKPSVR-----TNKTKVVKPVQTKRKVETPRDSYNRKDVEDKAKQLNVP----KVLVD 557
L K PS R ++ KPV TK ++ + P D
Sbjct: 320 LAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYED 379
Query: 558 DKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPA-KSTSIPAK- 615
KP P + P + + K V P P P A+N+P + + AK
Sbjct: 380 LKP-PTSPIPTPPSSSPASSKSVDAVAKP----AEPDVVPSPGSASNVPEVEPAQVEAKK 434
Query: 616 ---------------PTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEA 660
PT+ S +S V+ S T PA A + APP A
Sbjct: 435 TRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATD--AAAPPPA 492
Query: 661 NIDP 664
N+ P
Sbjct: 493 NMRP 496
Score = 29.5 bits (66), Expect = 8.0
Identities = 33/174 (18%), Positives = 48/174 (27%), Gaps = 29/174 (16%)
Query: 495 GKKRRKPGDDVALMKKPSV-----RTNKTKVVKPVQTKRKVETPRDSYNRKDVEDKAKQL 549
K D VA +P V + V+P Q + K P Y R +
Sbjct: 394 SPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYE-------- 445
Query: 550 NVPKVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKS 609
D KP + P VP ++ T+ AA PA
Sbjct: 446 -------DLKPPTSPSPTAPTGVSPSVSSTSSVPAVP----DTAPATAATDAAAPPPANM 494
Query: 610 TSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANID 663
+ + KP S + + + V + APP A D
Sbjct: 495 RPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVG-----NSAPPTALAD 543
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 32.9 bits (75), Expect = 0.53
Identities = 37/121 (30%), Positives = 45/121 (37%), Gaps = 23/121 (19%)
Query: 539 RKDVEDKAKQLNVPKVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSV 598
R VE + KQL+ V+ + K A+ Q P PV P A P
Sbjct: 119 RDIVELQLKQLDCELVI---RKKEALP-------QPPPPAPVVMMQPPPPHAMPPAS--- 165
Query: 599 PAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPP 658
P A P+ S P PT S PA KS +P P K +A RS AP
Sbjct: 166 PPAAQPAPSAPASSPP-PTPASPPPAK--------APKSSHP-PLKSPMAGTFYRSPAPG 215
Query: 659 E 659
E
Sbjct: 216 E 216
>gnl|CDD|227507 COG5180, PBP1, Protein interacting with poly(A)-binding protein
[RNA processing and modification].
Length = 654
Score = 32.8 bits (74), Expect = 0.70
Identities = 42/247 (17%), Positives = 75/247 (30%), Gaps = 31/247 (12%)
Query: 437 DKYDSMCRAIESASYYKDTFSSNM--RSMLGRAHRQDIDMRRDNHGVTPRPSKDTLDSIY 494
D Y + R + + + +SN R A +Q M D T R ++ +
Sbjct: 224 DLYSGVVRRGDECRSAESSNASNKENRQEKPAAAKQPHHMDDD---GTKRKMVIEIEGLS 280
Query: 495 GKKRRKPGDDVALMKKPSVRTNKTKVVKPVQTKRKVETPRDSYNRKDVEDKAKQLNVPKV 554
+ RKP A ++ Q K K + S++ K + + K
Sbjct: 281 LLENRKPEAVSAPEAVSPQSKSEGP--SSGQEKEKQIKEKKSFSYGW---KHTKFDSSKN 335
Query: 555 LV-----DDKPKPAIQVKVPKIAQKP--AKKPVKPTHVPLKPANSPKPTSVPAKAANIPA 607
L+ K I K KP K V + PK SV + +
Sbjct: 336 LLEVIKSKFKSLFDISSGELKWGSKPPWEAKAVSIA----TKVSKPKKESVRSGSKAAKK 391
Query: 608 KSTSIPAKPTNNSAKPANIISKLVTIPSKSVNPKP----------TKPAVAKGQRRSKAP 657
++ ++ S + N S + + K K A +++
Sbjct: 392 SPSTKHTTRSSTSLRRRNHGSFFGAKNPHTNDAKRVLFGKSFNMFIKSKEAHDEKKKGDD 451
Query: 658 PEANIDP 664
N++P
Sbjct: 452 ASENMEP 458
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is typically between 384 and 430 amino acids in length.
Length = 414
Score = 32.5 bits (74), Expect = 0.70
Identities = 29/130 (22%), Positives = 38/130 (29%), Gaps = 11/130 (8%)
Query: 495 GKKRRKPGDDVALMKKPSVRTNKTKVVKPVQTKRKVETPRDSYNRKDVEDKAKQLNVPKV 554
G + P S + KTK KP Q ++T S K E PK
Sbjct: 213 GSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDT-EKSSAPKPRETL-----DPKS 266
Query: 555 LVDDKPKPAIQVKVPKIAQKPAKK-PVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIP 613
P + K + K+ SP P + K P KS P
Sbjct: 267 PEKAPPIDT-TEEELKSPEASPKESEEASARKRSPSLLSPSPKAESPKPLASPGKS---P 322
Query: 614 AKPTNNSAKP 623
P + KP
Sbjct: 323 RDPLSPRPKP 332
>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated.
Length = 423
Score = 32.7 bits (75), Expect = 0.70
Identities = 15/83 (18%), Positives = 23/83 (27%)
Query: 585 VPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTK 644
V + A P + A +T+ PA + P K T + K
Sbjct: 190 VEVTTAGDLLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAA 249
Query: 645 PAVAKGQRRSKAPPEANIDPAEE 667
A PE D ++
Sbjct: 250 TGEPAANAAKAAKPEPMPDDQQK 272
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 32.9 bits (76), Expect = 0.73
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 588 KPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAV 647
P ++ PT+ A AA + + PA + PA + + + PKP A
Sbjct: 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA-----AAPAAPPKPAAAAA 91
Query: 648 AKGQRRSKAPPEANIDPAEE 667
A + A PA
Sbjct: 92 AAAAPAAPPAAAAAAAPAAA 111
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 32.2 bits (73), Expect = 0.76
Identities = 20/111 (18%), Positives = 30/111 (27%), Gaps = 5/111 (4%)
Query: 529 KVETPRDSYNRKDVEDKAKQLNVPKVLVDDKPKPAIQVKVPKIAQKPAKKPVKP---THV 585
ET + + + E K K K + K A+K AK T
Sbjct: 1 MAETKKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTT 60
Query: 586 PLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSK 636
K SV K ++ K+ A + +P K
Sbjct: 61 KKVTVKFEKTESV--KKESVAKKTVKKEAVSAEVFEASNKLFKNTSKLPKK 109
>gnl|CDD|233121 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family. This
family, related to bacterial glutathione synthetases,
contains at least two different alpha-L-glutamate
ligases. One is RimK, as in E. coli, which adds
additional Glu residues to the native Glu-Glu C-terminus
of ribosomal protein S6, but not to Lys-Glu mutants.
Most species with a member of this subfamily lack an S6
homolog ending in Glu-Glu, however. Members in
Methanococcus jannaschii act instead as a
tetrahydromethanopterin:alpha-l-glutamate ligase
(MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase
(MJ1001).
Length = 277
Score = 31.9 bits (73), Expect = 0.95
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 155 VIVKPDNGSNGLGISLIRN-------LRHLSQEQN--RNYICQEYIANP 194
V++KP GS G +SL R+ L H Q + QEYI P
Sbjct: 126 VVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKKP 174
Score = 29.6 bits (67), Expect = 5.8
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 327 QLLGFDILLDDTLNPYVLEVNHSPSF-----YTDTEIDVEIKE 364
++G D+L + V EVN +P F T I ++ +
Sbjct: 233 DVVGIDLLESEDRGLLVNEVNPNPEFKNSVKTTGVNIAGKLLD 275
>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region. The
defective chorion-1 gene (dec-1) in Drosophila encodes
follicle cell proteins necessary for proper eggshell
assembly. Multiple products of the dec-1 gene are formed
by alternative RNA splicing and proteolytic processing.
Cleavage products include S80 (80 kDa) which is
incorporated into the eggshell, and further proteolysis
of S80 gives S60 (60 kDa).
Length = 407
Score = 32.1 bits (72), Expect = 0.97
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 569 PKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKA---ANIPAKSTSIPAKPTNNSAKPAN 625
P++ A+ P P+ L A +P P PA A PA + PA P ++ +PA
Sbjct: 84 PQVGSFLAQLPAMPSMPGLLGAAAPVPAPAPAPAAAPPAAPAPAADTPAAPIPDAVQPAI 143
Query: 626 IISKLVTIPSKSVNPKPTKPAVAKGQR-RSKAPPEANIDPAEEIHR 670
+ + +NP + GQ + APP N+D ++ R
Sbjct: 144 LGQAALQNAFTFLNPSNFDASSLLGQSVPTFAPP--NLDFVAQMQR 187
>gnl|CDD|218825 pfam05956, APC_basic, APC basic domain. This region of the APC
family of proteins is known as the basic domain. It
contains a high proportion of positively charged amino
acids and interacts with microtubules.
Length = 359
Score = 32.0 bits (72), Expect = 1.0
Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 6/126 (4%)
Query: 559 KPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKP--TSVPAKAANIPAKSTSIPAKP 616
K +P+ K P Q+ ++ +P SP P + PA+ A P+ S+S
Sbjct: 31 KTQPSDPPKSPSPGQQRSRSLHRPAKPSELAELSPPPRSATPPARLAKTPSSSSS----Q 86
Query: 617 TNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPAEEIHRLTEWKK 676
T+ ++P T + + P R+ +P A + + H+ +
Sbjct: 87 TSTPSQPLPRPLPRPTQSAGRNSILPGPGNSLSQVPRTSSPARALLASSGSQHKTQKSPV 146
Query: 677 RVTFVE 682
R+ F++
Sbjct: 147 RIPFMQ 152
>gnl|CDD|117020 pfam08443, RimK, RimK-like ATP-grasp domain. This ATP-grasp domain
is found in the ribosomal S6 modification enzyme RimK.
Length = 190
Score = 31.3 bits (71), Expect = 1.1
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 132 PQTWILPRDNREVHAFLTS-KKATVIVKPDNGSNGLGISLIRN-------LRHLSQEQNR 183
L + F+ K V+VK GS G+G+ L + L +N+
Sbjct: 18 VPNTGLAWSPEDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAEDEQSLEQLLEAFKWLKNQ 77
Query: 184 NYICQEYIANP 194
+ QE+IA
Sbjct: 78 ILV-QEFIAEA 87
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a
separate clade. The apparent function is to aid assembly
of iron-sulfur cluster proteins. Homologs from Buchnera
and Wolbachia are clearly in the same clade but are
highly derived and score lower than some examples of
DnaK [Protein fate, Protein folding and stabilization].
Length = 599
Score = 32.2 bits (74), Expect = 1.2
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 24/111 (21%)
Query: 354 TDTEIDVEIKEQVLRDTFILCNLNSSIKRKVLQEERLEVQRRL--FKRPEREE----DEE 407
+D EI E++L+D+F + + + L E+++E +R L + + E+
Sbjct: 489 SDEEI-----ERMLKDSFK--HAEEDMYARALAEQKVEAERILEALQAALAADGDLLSED 541
Query: 408 DRQGCKERQWAWERAHMGNFRLLYPCQDGDKYDSMCRAIESASYYKDTFSS 458
+R A ++A GD D++ AIE+ D F++
Sbjct: 542 ERAAIDAAMEALQKA-----------LQGDDADAIKAAIEALEEATDNFAA 581
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 32.0 bits (73), Expect = 1.4
Identities = 25/98 (25%), Positives = 32/98 (32%), Gaps = 25/98 (25%)
Query: 585 VPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTK 644
A +P + P AA A A +A+PA P P
Sbjct: 386 SAAWGAPTPAAPAAPPPAA---APPVPPAAPARPAAARPA---------------PAPAP 427
Query: 645 PAVAKGQRRSKAPPEANIDPAEEIHRLTEWKKRVTFVE 682
PA A APP + DPA W+ V FV+
Sbjct: 428 PAAA-------APPARSADPAAAASAGDRWRAFVAFVK 458
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 31.7 bits (72), Expect = 1.4
Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 7/106 (6%)
Query: 560 PKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNN 619
P + +V P + PA + V A A + A T
Sbjct: 368 PGGGVPARVAGAVPAPGARAAAAVGASAVPAVTA----VTGAAGAALAPKAAAAAAATRA 423
Query: 620 SAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPA 665
A PA + + + A + ++A ++ D
Sbjct: 424 EAPPA---APAPPATADRGDDAADGDAPVPAKANARASADSRCDER 466
Score = 31.0 bits (70), Expect = 2.6
Identities = 20/105 (19%), Positives = 24/105 (22%), Gaps = 17/105 (16%)
Query: 563 AIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAK 622
VP A A + +P S PA A P A
Sbjct: 444 DGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDA---------PPDAAFEPAP 494
Query: 623 PANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPAEE 667
A + + P A A R A PA E
Sbjct: 495 RA------AAPSAATPAAVPDARAPAAASREDAPAAAA--PPAPE 531
>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome
partitioning].
Length = 264
Score = 31.3 bits (71), Expect = 1.5
Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 8/89 (8%)
Query: 541 DVEDKAKQLNVPKVLVDDKPKPAIQVK---VPKIAQKPAKKPVKPTHVPLKPANSPKPTS 597
+ + Q P L + + I+ + + AQ A V+ V KP
Sbjct: 100 LEQMEVDQKAQPTQLGEQPEQARIEEQPRTQSQKAQSQAT-TVQTQPVKPKPRPEKPQPV 158
Query: 598 VPAKAANIPAKSTS----IPAKPTNNSAK 622
PA A K+ P KP A
Sbjct: 159 APAPAPEPVEKAPKAEAAPPPKPKAEDAA 187
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are encoded
near genes for homologs of PfaB, PfaC, and/or PfaD.
Length = 2582
Score = 31.9 bits (72), Expect = 1.5
Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 7/104 (6%)
Query: 562 PAIQVKVPKI-AQKP--AKKPVKPTHVPLKPANSPKPTSVPAKAANIP-AKSTSIP-AKP 616
P I+ V + + + P P + + A + A +P A P
Sbjct: 1127 PVIKSVVTQAPVVQVTISVAPAAPVLPAVVSPPVVSAAPAQSVATAVAMAPVAEVPIAVP 1186
Query: 617 TNNSAKPANIISKLVTIPSKSVN-PKPTKPAVAKGQRRSKAPPE 659
S ++ P SVN + + ++ P E
Sbjct: 1187 VQQSVDYMPSVA-QAAAPQASVNDSAIQQVMMEVVAEKTGYPTE 1229
Score = 31.1 bits (70), Expect = 2.5
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 2/100 (2%)
Query: 565 QVKVPKIAQKPAKKPVKPTHVPL-KPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKP 623
VK+ +A + T P+ + S P + A P ++ PA+ +
Sbjct: 1116 IVKLSPLATQAPVIKSVVTQAPVVQVTISVAPAAPVLPAVVSPPVVSAAPAQSVATAVAM 1175
Query: 624 ANIISKLVTIP-SKSVNPKPTKPAVAKGQRRSKAPPEANI 662
A + + +P +SV+ P+ A Q +
Sbjct: 1176 APVAEVPIAVPVQQSVDYMPSVAQAAAPQASVNDSAIQQV 1215
>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI. This minor capsid
protein may act as a link between the external capsid
and the internal DNA-protein core. The C-terminal 11
residues may function as a protease cofactor leading to
enzyme activation.
Length = 238
Score = 30.9 bits (70), Expect = 1.8
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 542 VEDKAKQLNVPKVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANS--PKPTSVP 599
+ +V +VLV P+P + KP PV+ + A P ++
Sbjct: 128 ALQPRPRPDVEEVLVPAAPEPP----SYEETIKPGPAPVEEPVDSMAIAVPAIDTPVTLE 183
Query: 600 AKAANIPAKSTSIPAKPTNNSAKP 623
A P +P T +
Sbjct: 184 LPPAPQPP-PPVVPQPSTMVVHRR 206
Score = 30.5 bits (69), Expect = 2.6
Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 26/139 (18%)
Query: 525 QTKRKVETPRDSYNRKDVEDKAKQLNV---PKVLVDDKPKPAI-QVKVPKIAQKPA-KKP 579
+ ++ +E + E+ A Q P + +P+P + +V VP + P+ ++
Sbjct: 97 KVEKDLEKLLE--KVLGEEEPAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEET 154
Query: 580 VKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSKSVN 639
+KP P++ +VPA P PA P V
Sbjct: 155 IKPGPAPVEEPVDSMAIAVPA------------IDTPVTLELPPAP-------QPPPPVV 195
Query: 640 PKPTKPAVAKGQRRSKAPP 658
P+P+ V + R +
Sbjct: 196 PQPSTMVVHRRSRIKRTRS 214
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 31.3 bits (71), Expect = 2.0
Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 9/102 (8%)
Query: 567 KVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKST---SIPAKPTNNSAKP 623
A +KPT +P++ P + + + AK T S K
Sbjct: 141 VGLPPVAPAASPALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKT 200
Query: 624 ANIISKLVTIPSKSVNP------KPTKPAVAKGQRRSKAPPE 659
+ + L P K N K TK K + E
Sbjct: 201 SVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKE 242
>gnl|CDD|225603 COG3061, OapA, Cell envelope opacity-associated protein A [Cell
envelope biogenesis, outer membrane].
Length = 242
Score = 30.7 bits (69), Expect = 2.1
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 555 LVDDKPK--PAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSI 612
+VD PK + + PAK P +P V +P + + VP P K +S
Sbjct: 98 VVDLTPKVLEKTEAPLKAQEVTPAKTPDQPAPVEPEPIQAKQEKKVPRTVDAQPFKPSSG 157
Query: 613 PAK 615
+
Sbjct: 158 NWQ 160
>gnl|CDD|131850 TIGR02803, ExbD_1, TonB system transport protein ExbD, group 1.
Members of this family are Gram-negative bacterial inner
membrane proteins, generally designated ExbD, related to
the TolR family modeled by TIGRFAMs TIGR02801. Members
always are encoded next to a protein designated ExbB
(TIGR02797), related to the TolQ family modeled by
TIGRFAMs TIGR02796. ExbD and ExbB together form a proton
channel through which they can harness the proton-motive
force to energize TonB, which in turn energizes
TonB-dependent receptors in the outer membrane.
TonB-dependent receptors with known specificity tend to
import siderophores or vitamin B12. A TonB system and
Tol-Pal system often will co-exist in a single bacterial
genome.
Length = 122
Score = 29.4 bits (66), Expect = 2.5
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 564 IQVKVPKIAQKPAKKPVKPTHVPLKPANS 592
++V +P P +P KP +V +K S
Sbjct: 31 VKVDLPASTAAPQPRPEKPVYVSVKADLS 59
>gnl|CDD|217166 pfam02655, ATP-grasp_3, ATP-grasp domain. No functional
information or experimental verification of function is
known in this family. This family appears to be an
ATP-grasp domain (Pers. obs. A Bateman).
Length = 159
Score = 30.0 bits (68), Expect = 2.6
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 154 TVIVKPDNGSNGLGISLIRNLRHLSQEQNRNYICQEYI 191
IVKP +G G G+ + N R + N I QE+I
Sbjct: 32 KYIVKPRDGCGGEGVRFVENGREDEEFIE-NVIIQEFI 68
>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed.
Length = 327
Score = 30.8 bits (70), Expect = 2.7
Identities = 9/64 (14%), Positives = 14/64 (21%), Gaps = 6/64 (9%)
Query: 562 PAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSA 621
P V + P + + KP K A + T+
Sbjct: 175 PTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPA------TSGKP 228
Query: 622 KPAN 625
K
Sbjct: 229 KSGA 232
>gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome
partitioning].
Length = 324
Score = 30.6 bits (69), Expect = 2.9
Identities = 28/154 (18%), Positives = 49/154 (31%), Gaps = 21/154 (13%)
Query: 526 TKRKVETPRDSYNRKDVEDKAKQLNVPKV---------LVDDKPKPAIQVKVPKIAQKPA 576
+ K + D Y+ ++ ++ V + + P Q + + +
Sbjct: 41 KRMKSKRDDDPYDEVADDEGVGEVRVVRKNEAPQFTQEHEAARQSPQHQYQPEYASAQI- 99
Query: 577 KKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSK 636
K PV P P+PT PA +P + +P P
Sbjct: 100 KIPVPQPPQISDPPAHPQPTQ--------PALDQE---QPPEEARQPVLPQEAPAPQPVH 148
Query: 637 SVNPKPTKPAVAKGQRRSKAPPEANIDPAEEIHR 670
S P+P V + PE ++PA E+ R
Sbjct: 149 SAAPQPAVQTVQPAVPEQQVQPEEVVEPAPEVKR 182
>gnl|CDD|222843 PHA02030, PHA02030, hypothetical protein.
Length = 336
Score = 30.3 bits (68), Expect = 3.3
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 569 PKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIIS 628
PK + P P A S +VPA AA + + S+P P N + P
Sbjct: 257 PKSKAAGSNLPAVPNVAA--DAGSAAAPAVPAAAAAVAQAAPSVPQVP-NVAVLPDVPQV 313
Query: 629 KLVTIPSKSVNP-KPTKPAVAK 649
V P+ P P PA +
Sbjct: 314 APVAAPAAPEVPAVPVVPAAPQ 335
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 30.4 bits (69), Expect = 3.6
Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 22/83 (26%)
Query: 585 VPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTK 644
VPL + + P + PA AA + T+ + PA P +
Sbjct: 162 VPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVD---------------PQQ 206
Query: 645 PAVAKGQRRSKAPPEANIDPAEE 667
AV AP +AN+D A
Sbjct: 207 NAVV-------APSQANVDTAAT 222
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 30.5 bits (68), Expect = 3.6
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 587 LKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPA 646
++P S AA+ S IP + PA K + S V KP P+
Sbjct: 156 VEPGTKVAIISKSEDAASQVTPSQKIPETTDPKPSPPAEDKQK-PKVESAPVAEKPKAPS 214
Query: 647 VAKGQRRSKAPPEANIDPAEEIHR--LTEWKKRV 678
++S P+ + P E R +T +KRV
Sbjct: 215 SPPPPKQSAKEPQ--LPPKERERRVPMTRLRKRV 246
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 30.2 bits (69), Expect = 4.1
Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 7/130 (5%)
Query: 550 NVPKVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKS 609
P V + + + + + A K K P + + S + A++
Sbjct: 409 QAPAVPLPETTSQLLAARQQLQRAQGATKAKKSE--PAAASRARPVNSALERLASVRPAP 466
Query: 610 TSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPAEEIH 669
+++ P A + + PK K A+ K P A A E
Sbjct: 467 SALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEH----EKTPELAA-KLAAEAI 521
Query: 670 RLTEWKKRVT 679
W V+
Sbjct: 522 ERDPWAALVS 531
Score = 29.4 bits (67), Expect = 7.4
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 9/112 (8%)
Query: 559 KPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTN 618
P + + T P P+ +VP A+ P ++ ++P T
Sbjct: 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETT 419
Query: 619 NSAKPANIISKLVTIPSKSVNPKPTK--PAVAKGQRRSKAPPE--ANIDPAE 666
+ A + K K PA A R + E A++ PA
Sbjct: 420 SQLLAA-----RQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAP 466
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 30.4 bits (68), Expect = 4.4
Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 10/113 (8%)
Query: 563 AIQVKVPKIAQKPAKKPVKPTHVPLK-PANSPKPTSVPAKAANIPA-KSTSIPAKPTNNS 620
A + A P++ +P P ++ PA A A + + P ++
Sbjct: 206 APAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSSGDSG 265
Query: 621 AKPANIISKLV--------TIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPA 665
++ KL T+ V + K V + ++ A PA
Sbjct: 266 PYVTPLVRKLAKDKGVDLSTVKGTGVGGRIRKQDVLAAAKAAEEARAAAAAPA 318
Score = 29.2 bits (65), Expect = 8.3
Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 559 KPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKST 610
+ + + P P P PA +P P A AA P S
Sbjct: 212 EEEAPAPSE-AGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSSG 262
>gnl|CDD|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor
(ARF-GEF); Provisional.
Length = 1780
Score = 30.6 bits (69), Expect = 4.4
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 453 KDTFSSNMRSMLGRAHRQDIDMRRDNHGVTPRPSKDT-----LDSIYGKKRRKPGDD 504
KD MRS+ R + +I M+ D+ + S ++ LDSI RK G+D
Sbjct: 779 KDLPEEFMRSLYERISKNEIKMKEDDLVPQQKQSANSNRILGLDSILNIVIRKRGED 835
>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau;
Validated.
Length = 709
Score = 30.4 bits (68), Expect = 4.5
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 10/101 (9%)
Query: 583 THVPLKPANSPKPTSVP-AKAANIPAKSTSIPAKPTN-NSAKPA-----NIISKLVTIPS 635
K + KP P A+ A P ++ S A P+ +A P N + P
Sbjct: 382 AQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPD 441
Query: 636 KSVNPKPTKPAVAKG-QRRSKA--PPEANIDPAEEIHRLTE 673
++ T AK Q S+A PPE + + T+
Sbjct: 442 EAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETD 482
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 30.3 bits (68), Expect = 4.5
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 558 DKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIP-AKSTSIPAKP 616
D K A + +P+ + P P KP +PA P P S P P A+S +P P
Sbjct: 389 DVKKKAPEPDLPQPDRHPG--PAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSP 446
Query: 617 TNNSAKPANIISKL 630
A ++
Sbjct: 447 ---QASAPRNVASG 457
>gnl|CDD|173156 PRK14693, PRK14693, hypothetical protein; Provisional.
Length = 552
Score = 30.1 bits (67), Expect = 4.8
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 568 VPKIAQKPAK-----KPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPA-KPTNNSA 621
+P AQ+ + +P KP VP++PA P+ + A ST++PA +PT
Sbjct: 492 IPDGAQQSGRSLNLQQPEKPGQVPMRPA-MPEGVEIAPDGQLPYATSTTMPATRPTTEGR 550
Query: 622 KP 623
+P
Sbjct: 551 QP 552
>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein.
Length = 306
Score = 29.6 bits (66), Expect = 5.3
Identities = 20/88 (22%), Positives = 25/88 (28%), Gaps = 2/88 (2%)
Query: 573 QKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLVT 632
Q P +VP PA +P P P P + A
Sbjct: 7 QLPPGLAGLVANVP--PAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSA 64
Query: 633 IPSKSVNPKPTKPAVAKGQRRSKAPPEA 660
+ V P +PA A A PEA
Sbjct: 65 MTPHVVQQAPAQPAPAAPPAAGAALPEA 92
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 28.6 bits (64), Expect = 5.7
Identities = 15/74 (20%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Query: 543 EDKAKQLNVPKVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKA 602
E +A+++ P P P V P P P +P A
Sbjct: 72 EQEARKILAPLT----PPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAA 127
Query: 603 ANIPAKSTSIPAKP 616
A P+ P P
Sbjct: 128 APPPSDPPQPPRAP 141
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 29.6 bits (67), Expect = 5.8
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 23/80 (28%)
Query: 276 NQWFCR----MGYDTDLVWS-----------RIDDVIVKTVLSAHPNIKTMYNSVFPRHN 320
N CR +G D + V S + V+ L+ +P+ +T+ ++
Sbjct: 269 NPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAETVAATLN---- 324
Query: 321 YMTACFQLLGFDILLDDTLN 340
+ G DI D T
Sbjct: 325 ----TASVAGGDIPSDATRL 340
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 30.0 bits (67), Expect = 6.1
Identities = 30/137 (21%), Positives = 45/137 (32%), Gaps = 32/137 (23%)
Query: 558 DKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSP----------------------KP 595
D P A P A + KP P H PLK + + +P
Sbjct: 61 DTPATAAA---PAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQP 117
Query: 596 TSVPAKA-ANIPAKSTSIPAKPTNNSAKPANIISK------LVTIPSKSVNPKPTKPAVA 648
SVP +A A P ++ SIP+ A A + + L +P + T V
Sbjct: 118 VSVPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVP 177
Query: 649 KGQRRSKAPPEANIDPA 665
+ ++ PA
Sbjct: 178 RAPVQAPVVAAPAPVPA 194
>gnl|CDD|227510 COG5183, SSM4, Protein involved in mRNA turnover and stability [RNA
processing and modification].
Length = 1175
Score = 29.9 bits (67), Expect = 6.2
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 7/124 (5%)
Query: 385 LQEERLEVQRRLFKRPEREEDEEDRQGCKERQWAWERAHMG-NFRLLYPCQDGDKYDSMC 443
L+ L R + + RE + +R +++ H N R L + + + +
Sbjct: 216 LRRRMLMNPRAILESISRESAQLERNTARQQG-----EHARENGRDLSSDSNNNVINPVS 270
Query: 444 RAIESASYYKDTFSSNMRSMLGRAHRQDIDMRRDNHGVTPRPSKDTLDSI-YGKKRRKPG 502
+ S N+R + H R ++ D+ SI YG P
Sbjct: 271 DNVPSRDMNDSRNVENVRPVRSNDHMNSFLFRPIVDSISGMTLPDSFSSIIYGSSSCNPT 330
Query: 503 DDVA 506
D +
Sbjct: 331 DRIH 334
>gnl|CDD|239634 cd03579, NTR_netrin-1_like, NTR domain, Netrin-1-like subfamily;
The C-terminal NTR domain of netrins is also called
domain C in the context of C. elegans netrin UNC-6.
Netrins are secreted proteins that function as tropic
cues in the direction of axon growth and cell migration
during neural development. These proteins may be
chemoattractive to some neurons and chemorepellant for
others. In the case of netrin-1, attraction and
repulsion responses are mediated by the DCC and UNC-5
receptor families. The biological activities of C.
elegans UNC-6, which may either attract or repel
migrating cells or axons, are mediated by its different
domains. The C-terminal NTR domain of UNC-6 has been
shown to inhibit axon branching activity.
Length = 115
Score = 28.0 bits (63), Expect = 6.5
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 17/83 (20%)
Query: 18 PPIEQSSTSLITGDSDLSSKKSRVRVVATICLDLCSYELVGRVARQCGMT--VVDDKSLW 75
+ + L DL+ K +++V SY L+G+ ++D +SL
Sbjct: 40 SRLRRGDQPLWVPRKDLACKCPKLKVGK-------SYLLLGKDEDSPERGGLILDKRSL- 91
Query: 76 DVL-WSDPCIGPDTHRRMKRFQR 97
V+ W D + RR++RFQR
Sbjct: 92 -VIEWRD-----EWARRLRRFQR 108
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 29.6 bits (66), Expect = 6.6
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 13/110 (11%)
Query: 583 THVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSKSVNPKP 642
++ NSP+ S + P + P ++S + + + NP
Sbjct: 38 QNIENDGQNSPETQSPLTELQPSPLPPNTTLDAPVSDSQGDES------SSEQQPQNPNS 91
Query: 643 TKPA--VAKGQRRSKAPPEANIDPAEEIHRLTEWKKRVTFVESMDIKRLI 690
T+PA K +RR + E N +PA HR+ R + +D++ LI
Sbjct: 92 TEPAPPPKKRRRRKRFFTEINANPAFRRHRV-----RGGLGKEVDVEALI 136
>gnl|CDD|149827 pfam08886, GshA, Glutamate-cysteine ligase. This is a rare family
of glutamate--cysteine ligases, EC:6.3.2.2, demonstrated
first in Thiobacillus ferrooxidans and present in a few
other Proteobacteria. It is the first of two enzymes for
glutathione biosynthesis. It is also called
gamma-glutamylcysteine synthetase. The structure of this
family has been solved, and is similar to that of human
glutathione synthetase and very different to
gamma-glutamylcysteine synthetase from Escherichia coli.
Length = 404
Score = 29.5 bits (67), Expect = 6.6
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Query: 155 VIVKPDNGSNGLGISLIRN---LRHLSQEQNRN 184
V VK DNG+ G+GI +R+ + L+++Q RN
Sbjct: 263 VFVKADNGTYGMGIMTVRSGDEVLALNRKQ-RN 294
>gnl|CDD|145556 pfam02478, Pneumo_phosprot, Pneumovirus phosphoprotein. This
family represents the phosphoprotein of Paramyxoviridae,
a putative RNA polymerase alpha subunit that may
function in template binding.
Length = 266
Score = 29.1 bits (65), Expect = 7.6
Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 17/100 (17%)
Query: 600 AKAANIPAKSTSIP-AKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSK--- 655
AK A KS P K + S + N IS+ +P+ S P K K + S
Sbjct: 14 AKKAEAFQKSLKKPSHKRQSISGEKVNTISEKFELPTIS-KPTTPKGPCIKDEIISVNKV 72
Query: 656 ------------APPEANIDPAEEIHRLTEWKKRVTFVES 683
+ + T+ KK+V+F E
Sbjct: 73 KDIESIYEKPVTPTSDGKTPTEKSDDTPTKKKKKVSFKEP 112
>gnl|CDD|238239 cd00412, pyrophosphatase, Inorganic pyrophosphatase. These enzymes
hydrolyze inorganic pyrophosphate (PPi) to two molecules
of orthophosphates (Pi). The reaction requires bivalent
cations. The enzymes in general exist as homooligomers.
Length = 155
Score = 28.2 bits (64), Expect = 8.1
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 123 QYPNDYNFFPQTW 135
YP +Y F PQT
Sbjct: 37 GYPWNYGFIPQTL 49
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 29.2 bits (66), Expect = 8.1
Identities = 21/112 (18%), Positives = 33/112 (29%), Gaps = 4/112 (3%)
Query: 568 VPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTN-NSAKPANI 626
P A PA P P + P + PA AK + + +A PA
Sbjct: 52 APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPA-- 109
Query: 627 ISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPAEEIHRLTEWKKRV 678
+ P+ + A + R + A P + K R+
Sbjct: 110 -APEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARI 160
>gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional.
Length = 467
Score = 29.4 bits (65), Expect = 8.3
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 558 DKPKPAIQVKVPKIAQKPA------KKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTS 611
+KP A K + KP+ K P K L ++ P K A+ P +
Sbjct: 373 EKPAAATDKPPEKASDKPSPEKTSEKTPDKSHEKQLDKSSEPVAEKALDKTADKPDAAAR 432
Query: 612 IPA 614
+PA
Sbjct: 433 LPA 435
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 29.2 bits (66), Expect = 8.6
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 589 PANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKP---ANIISKLVTIPSKSVNPKPTKP 645
P P PT A + A A A+P + L + S KP +
Sbjct: 535 PDVPPAPTPAEPAAPVVAAAP---KAAAATPPAQPGLLSRFFGALKALFSGGEETKPQEQ 591
Query: 646 AVAKGQRRSKAPPE 659
K + + + +
Sbjct: 592 PAPKAEAKPERQQD 605
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 29.2 bits (65), Expect = 8.8
Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 8/102 (7%)
Query: 520 VVKPVQTKRKVETPRDSYNRKDVEDKAKQLNVPKVLVDDKPKPAIQVKVPKIAQKPAKKP 579
V PV + + PR + + V + + L+VP D P P P ++
Sbjct: 291 VPAPVPPTPEDDNPRPTDDEFAVPNFNEGLDVPDNPQDPVPPPN-----EGKDGNPNEEN 345
Query: 580 VKPT---HVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTN 618
+ P VP + P P +VP + + + P P N
Sbjct: 346 LFPPGDDEVPDESNVPPNPPNVPGGSNSEFSSDVENPPNPPN 387
>gnl|CDD|236698 PRK10475, PRK10475, 23S rRNA pseudouridine synthase F; Provisional.
Length = 290
Score = 28.9 bits (65), Expect = 8.9
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 557 DDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAK 601
+ KPK + K ++P K K +PA++ K + P +
Sbjct: 242 EAKPKAKAKPKTAG-IKRPVVKMEKTAEKGGRPASNGKRFTSPGR 285
>gnl|CDD|225227 COG2352, Ppc, Phosphoenolpyruvate carboxylase [Energy production
and conversion].
Length = 910
Score = 29.2 bits (66), Expect = 8.9
Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 243 NKYMHLTNYSVNKHSIS--FIHDEEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKT 300
++++ L N + + H I IH+ S ++ + G + V ++++ V+
Sbjct: 77 SQFLLLANIAEDYHRIRRRQIHEAAGDSDGSLAATLKKLKEQGLSPETVARALENLNVEL 136
Query: 301 VLSAHPNIKTMYNSVFPRHNYMTACFQLLG 330
VL+AHP + +V + + + L
Sbjct: 137 VLTAHPT-EVQRRTVIDKQREINRLLRKLD 165
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 29.4 bits (65), Expect = 9.1
Identities = 23/126 (18%), Positives = 33/126 (26%), Gaps = 10/126 (7%)
Query: 552 PKVLVDDKPKPAIQVKVPKIAQKPAKKPVK--PTHVPLKPANSPKPTSVPAKAANIPAKS 609
K L+ + K+ A K L K T+VP +
Sbjct: 401 AKTLIITRTATNATTTTHKVVFHKAPDTTKSVIFVYTLVHVEPHKTTAVPT--------T 452
Query: 610 TSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPAEEIH 669
S+P T + A+ S T + S P+ T P A
Sbjct: 453 PSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNAT 512
Query: 670 RLTEWK 675
T K
Sbjct: 513 SPTTQK 518
>gnl|CDD|222734 pfam14397, ATPgrasp_ST, Sugar-transfer associated ATP-grasp. A
member of the ATP-grasp fold predicted to be involved in
the biosynthesis of cell surface polysaccharides.
Length = 284
Score = 28.9 bits (65), Expect = 9.4
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 13/66 (19%)
Query: 140 DNREVHAFLTSKKATVIVKPDNGSNGLGISLI------------RNLRHLSQEQNRNYIC 187
D E AF + K + VKP +G G GI + L L ++ + ++
Sbjct: 59 DESEFVAFCRNHK-PLFVKPVDGMGGKGIEKLELDDTVSKERKLIALYKLLEDNEKGFVV 117
Query: 188 QEYIAN 193
QE I
Sbjct: 118 QERIRQ 123
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 29.0 bits (66), Expect = 9.7
Identities = 18/99 (18%), Positives = 26/99 (26%), Gaps = 25/99 (25%)
Query: 538 NRKDVEDKAKQLNVPKVLVDDKPKPAIQ----------VKVPKIAQK------PAKKPVK 581
++ + K+LN + K K + VK + QK P K
Sbjct: 605 KAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQKGEVLSIPDDKEAI 664
Query: 582 PT------HVP---LKPANSPKPTSVPAKAANIPAKSTS 611
VP L+ PK P T
Sbjct: 665 VQAGIMKMKVPLSDLEKIQKPKKKKKKKPKTVKPKPRTV 703
>gnl|CDD|233048 TIGR00605, rad4, DNA repair protein rad4. All proteins in this
family for which functions are known are involved in
targeting nucleotide excision repair to specific regions
of the genome.This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 713
Score = 29.1 bits (65), Expect = 9.8
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 12/100 (12%)
Query: 476 RDNHGVTPRPSKDTLDSIYGKKRRKPGDDVALMKKPSVRTNKTKVVKPVQ--------TK 527
+ + P TL + GK DV +K K +V+K +
Sbjct: 502 KKTQALKPGKKACTLGFVNGKAGVYSRKDVHDLKSAEQWYKKGRVIKLGEQPYKVVKARA 561
Query: 528 RKVETPRDSYNRKDVE---DKAKQLNVPKVLVDDK-PKPA 563
R V P+ +D+ + +L +P VD PK A
Sbjct: 562 RTVRLPKGEAEEEDLGLYSYEQTELYIPPPAVDGIVPKNA 601
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.400
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,047,565
Number of extensions: 3511582
Number of successful extensions: 3825
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3551
Number of HSP's successfully gapped: 171
Length of query: 714
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 610
Effective length of database: 6,324,786
Effective search space: 3858119460
Effective search space used: 3858119460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.0 bits)