RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13386
(714 letters)
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB:
3tii_A* 3tin_A*
Length = 380
Score = 268 bits (686), Expect = 2e-83
Identities = 73/361 (20%), Positives = 138/361 (38%), Gaps = 54/361 (14%)
Query: 52 CSYELVGRVARQCG--MTVVDDKSLWDVLWSDPCIGPDTH--RRMKRFQRTNHFPLIMEL 107
Y V ++ G + D ++++ + P Q N++ +L
Sbjct: 15 TVYAEVAKILLASGQWKRLKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKL 74
Query: 108 CRKNLLAKNLNQMKIQ------YPNDYNFFPQTWILPRDNR--------------EVHAF 147
CRK L K + +P Y +P P E F
Sbjct: 75 CRKASLVKLIKTSPELTETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEF 134
Query: 148 LTS--------KKATVIVKPDNGSNGLGISLIRNLRHL---SQEQNRNYICQEYIANPFL 196
+S + I K +G+ G GI + + L Q + ++ Q+Y+ +P L
Sbjct: 135 RSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDATELLDFIDNQGQVHVIQKYLESPLL 194
Query: 197 ID--GLKFDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVN 254
++ KFD+R + L+ + IY++++G++R ++ Y N + HLTN+ +
Sbjct: 195 LEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSDT---NFQDMTSHLTNHCIQ 249
Query: 255 KHSISFIHDEEVGSKRKISTINQWFCRMG--YDTDLVWSRIDDVIVKTVLSAHPNIKTMY 312
K E G++ NQ+ + + +I ++I + P I T Y
Sbjct: 250 KEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKY 309
Query: 313 NSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEIDVEIKEQVLRDTFI 372
P H FQL GFD ++D L +++EVN +P+ ++ E+ + ++
Sbjct: 310 L---PYH-----SFQLFGFDFMVDKNLKVWLIEVNGAPAC--AQKLYAELCKGIVDLAIS 359
Query: 373 L 373
Sbjct: 360 S 360
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 84.5 bits (208), Expect = 7e-17
Identities = 91/614 (14%), Positives = 194/614 (31%), Gaps = 146/614 (23%)
Query: 11 ILSDTSL------PPIEQSSTSLITGDSDLSSKKSRVRVVATICLDLCSYE-LVGRVARQ 63
ILS + + L + LS ++ V+ L + +Y+ L+ + +
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLF--WTLLSKQEEMVQKFVEEVLRI-NYKFLMSPIKTE 101
Query: 64 CGMTVVDDK---SLWDVLWSDPCIGPDTH-RRMKRF-------QRTNHFPLI----MELC 108
+ + D L++D + + R++ + + +
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 109 RKNLLAKN-LNQMKIQYPNDYNFFPQTWI-LPRDNREVHAFLTSKKATVIVKPDNGSNGL 166
K +A + K+Q D+ F W+ L N +K + P+ S
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 167 GISLIRNLRHLSQEQNRNYICQEYIANPFLI-DGLK-------FDMRVYTLITSFDPMRI 218
S I+ H Q + R + + N L+ ++ F++ L+T+
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK--- 275
Query: 219 YVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVNKHSISFIHDE-------------- 264
+ F + T+ S++ HS++ DE
Sbjct: 276 -----QVTDFLSAATT--------------THISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 265 ----EV--GSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPR 318
EV + R++S I + R G T W V + + I++ N + P
Sbjct: 317 DLPREVLTTNPRRLSIIAE-SIRDGLAT---WDNWKHVNCDKLTTI---IESSLNVLEP- 368
Query: 319 HNYMTACFQLLGFDILLDDTLNPY-VLEVNHSPSFYTDTEIDVE-------IKEQVLRDT 370
F L + P +L + +D + V +++Q T
Sbjct: 369 -AEYRKMFDRLS--VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 371 FILCNLNSSIKRKVLQEERLEVQRRLFKR--PEREEDEEDRQGCKERQ-WAWERA-HMGN 426
+ ++ +K K+ E + R + + D +D Q + H+ N
Sbjct: 426 ISIPSIYLELKVKL--ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 427 ---------FRLLYPCQDGDKYDSMCRAIESASYYKDTFSSNMRSMLG--RAHRQDIDMR 475
FR+++ D + + + I S + S + + L + ++ I
Sbjct: 484 IEHPERMTLFRMVF--LD---FRFLEQKIRHDSTAWNASGS-ILNTLQQLKFYKPYI--- 534
Query: 476 RDNHGVTPRPSKDTLDSIYGKKRRKPGDDVALMKKPSVRTNKTKVVKPVQTKRKVETPRD 535
DN R LD + K +++ + + T ++ + + +
Sbjct: 535 CDNDPKYERLVNAILDFL-----PKIEENL-------ICSKYTDLL-----RIALMAEDE 577
Query: 536 SYNRKDVEDKAKQL 549
+ E+ KQ+
Sbjct: 578 AI----FEEAHKQV 587
Score = 51.0 bits (121), Expect = 1e-06
Identities = 52/362 (14%), Positives = 103/362 (28%), Gaps = 105/362 (29%)
Query: 3 DPNIGSITILSDTSLPPIEQSSTSLITGDS-DLSSKKSRVRV------VATICLDLCSYE 55
+ + T+ ++ S +L + L K R V T S
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-- 331
Query: 56 LVGRVARQCGMTVVDDKSLWDVLWSDP--------------CIGPDTHRRMKRFQRTNHF 101
++ R D + WD W + P +R+M F R + F
Sbjct: 332 IIAESIR-------DGLATWD-NWKHVNCDKLTTIIESSLNVLEPAEYRKM--FDRLSVF 381
Query: 102 P-----------------------LIM-ELCRKNLLAKNLNQMKIQYPNDYNFFPQTWIL 137
P +++ +L + +L+ K + I P+ Y
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK--- 438
Query: 138 PRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQEQNRNYICQEYIANPFLI 197
+ +H IV N I + L Y +I
Sbjct: 439 LENEYALHR--------SIVDHYN------IPKTFDSDDLIPPYLDQYFYS-HIG----- 478
Query: 198 DGLKFDMRVYTLITSFDPMR-IYVHKDGIVRFATVK-----YERPKQGNLTNKYMHLTNY 251
++ R +++ D RF K G++ N L Y
Sbjct: 479 ----HHLKNIEHPERMTLFRMVFL--D--FRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 252 SVNKHSISFIHDEEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKTVLSAHPNIKTM 311
+I D + +R ++ I + + +L+ S+ D +++ L + + +
Sbjct: 531 K------PYICDNDPKYERLVNAILDFL--PKIEENLICSKYTD-LLRIALM-AED-EAI 579
Query: 312 YN 313
+
Sbjct: 580 FE 581
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 2e-07
Identities = 79/553 (14%), Positives = 148/553 (26%), Gaps = 218/553 (39%)
Query: 235 RP---KQGNL-------TNKYMHLT------NYSVNKHSISFIHDEEVGSK-----RKIS 273
RP G+L T + + N + + + F D+E + +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK--- 63
Query: 274 TINQWFCRMGYDTDLV----WSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLL 329
F +GY + LV + D V+ L+ F + Y L
Sbjct: 64 -----F--LGYVSSLVEPSKVGQFDQVL-NLCLTE-----------F-ENCY------LE 97
Query: 330 GFDILLDDTLNPYVLEVNHS--PSFYTDTEIDVEIKEQVLRDTFILCNL---------NS 378
G DI H+ + + + ++++++ + NS
Sbjct: 98 GNDI--------------HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 379 SIKRKV-----------------------LQE----------ERLEVQRRLFKRPEREED 405
++ R V L++ + ++ R
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 406 EEDR---QGCKERQW--AWERAHMGNFRLLYP-----------CQDGDKYDSMCR----- 444
+ ++ QG +W ++ L P Y +
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH----YVVTAKLLGFT 259
Query: 445 ----------------------AIESASYYKDTFSSNMRSML------G-RAHRQDIDMR 475
AI + ++F ++R + G R +
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSW-ESFFVSVRKAITVLFFIGVRCYEA----- 313
Query: 476 RDNHGVTPRPSKDTLDSIYGKKRRKPGDDVALMKKPSVR-TNKTKVVKPVQTKRKVETPR 534
N + P +D+L++ + P M S+ + +V V P
Sbjct: 314 YPNTSLPPSILEDSLEN--NEGVPSP------ML--SISNLTQEQVQDYVNKTNS-HLPA 362
Query: 535 DS------YNRKDVEDKAKQLNV---PKVLV-------DDKPKPAI-QVKVPKIAQKPAK 577
N AK L V P+ L K + Q ++P +K
Sbjct: 363 GKQVEISLVN------GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 578 K----PVK-PTHVP-LKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSA----KPANII 627
PV P H L PA+ + + AK IP T + + +I
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 628 SKLV-TIPSKSVN 639
++V I V
Sbjct: 477 ERIVDCIIRLPVK 489
Score = 42.0 bits (98), Expect = 8e-04
Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 41/143 (28%)
Query: 282 MG---YDT----DLVWSRIDDV--------IVKTVLSAHPNIKTMYNSVFP-------RH 319
MG Y T VW+R D+ I+ V++ P T++ F R
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN-PVNLTIH---FGGEKGKRIRE 1686
Query: 320 NYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEIDVEIKEQVLRDT-F----ILC 374
NY F+ + L + + + E + S +F ++ +L T F +
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG--------LLSATQFTQPALT- 1737
Query: 375 NLNSSIKRKVLQEERLEVQRRLF 397
L + L+ + L F
Sbjct: 1738 -LMEKAAFEDLKSKGLIPADATF 1759
Score = 31.9 bits (72), Expect = 0.96
Identities = 41/195 (21%), Positives = 68/195 (34%), Gaps = 65/195 (33%)
Query: 15 TSLPPIEQSSTSLITGDSDLSSKKSRVRVVATICLDLCSYELVGRVARQCGMTVVD-DKS 73
+ LP +Q SL+ G + VV+ L Y L + + + +D +
Sbjct: 358 SHLPAGKQVEISLVNGA--------KNLVVSGPPQSL--YGLNLTLRKAKAPSGLDQSRI 407
Query: 74 LWDVLWSDPCIGPDTHRRMK---RFQRTN---HFPLI---MELCRKNLLAKNL----NQM 120
P + R++K RF H L+ +L K+L+ N+ +
Sbjct: 408 ------------PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 121 KIQYPNDYNFFPQTWILPRDNREVHAFL------------------TSKKATVIVK--PD 160
+I P Y+ F D R + + T KAT I+ P
Sbjct: 456 QI--PV-YDTF--DG---SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPG 507
Query: 161 NGSNGLGISLIRNLR 175
G++GLG+ RN
Sbjct: 508 -GASGLGVLTHRNKD 521
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 48.6 bits (115), Expect = 2e-06
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Query: 551 VPKVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKST 610
V + + +P P + P + +KP KP K PK P ++
Sbjct: 58 VVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFEN 117
Query: 611 SIPAKPTNNSAKPANI--ISKLVTIPSKSVNPKPTKPAVAKGQR 652
+ PA+ T+++A A ++ + + P +P PA A+ R
Sbjct: 118 TAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALR 161
Score = 43.5 bits (102), Expect = 8e-05
Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 2/109 (1%)
Query: 551 VPKVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKST 610
P V P+P ++ + K V KP PKP P K K
Sbjct: 46 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPV--VIEKPKPKPKPKPKPVKKVQEQPKRD 103
Query: 611 SIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPE 659
P + S ++L + + + KP + + S+ P+
Sbjct: 104 VKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQ 152
Score = 36.6 bits (84), Expect = 0.015
Identities = 23/117 (19%), Positives = 36/117 (30%), Gaps = 1/117 (0%)
Query: 551 VPKVLVDDKPKPAIQVKVPKIA-QKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKS 609
V +V+ P I V + A +P + P ++P P+P P K A + +
Sbjct: 22 VHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEK 81
Query: 610 TSIPAKPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPEANIDPAE 666
KP K K P +S P + S A +
Sbjct: 82 PKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTS 138
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 43.3 bits (102), Expect = 2e-04
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 21/152 (13%)
Query: 82 PCIGPDT---HRRMKRFQRTNHFPLI-----MELCR-KNLLAKNLNQMKIQYPNDYNFFP 132
I P+ + +RFQ ++ ELC K + + + I + Y
Sbjct: 78 TLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYATM- 136
Query: 133 QTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQ--EQNRNYICQEY 190
+ E + V VKP NGS + + + + + Q +N + I QE
Sbjct: 137 -------ASFEEALAAGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSKNTDLIVQEL 189
Query: 191 IANP-FLIDGLKFDMRVYTLITSFDPMRIYVH 221
+ +D D+ + + F ++ +
Sbjct: 190 LVGQELGVDAY-VDLISGKVTSIFIKEKLTMR 220
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 38.2 bits (89), Expect = 0.007
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 17/88 (19%)
Query: 132 PQTWILPRDNREVHAFLTSKKATVIVKPDNGSNGLGIS----------LIRNLRHLSQEQ 181
P+T + D E + + V++KP GS G ++ L Q
Sbjct: 104 PKTALA-TDREEALRLMEAFGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQ 162
Query: 182 NRNYICQEYIANPFLIDGLKFDMRVYTL 209
++ + QEY+ P D+RV+ +
Sbjct: 163 HQLFYIQEYVEKP------GRDIRVFVV 184
Score = 36.6 bits (85), Expect = 0.020
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 328 LLGFDILLDDTLNPYVLEVNHSPSF---YTDTEIDV 360
++ D+ + V EVNH+ F T +D+
Sbjct: 233 VVAVDLFESER-GLLVNEVNHTMEFKNSVHTTGVDI 267
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II,
nysgrc., structural genomics, protein structure
initiative; 1.87A {Archaeoglobus fulgidus}
Length = 305
Score = 37.0 bits (85), Expect = 0.016
Identities = 24/166 (14%), Positives = 46/166 (27%), Gaps = 28/166 (16%)
Query: 102 PLIMELCR-KNLLAKNLNQMKIQYPNDYNFFPQTWILPRDNREVHAFLTSKKATVIVKPD 160
+ + K L K L PQT + P D + I+KP
Sbjct: 102 SRAIAVTSDKWELYKKLR--------GEVQVPQTSLRPLDCK------------FIIKPR 141
Query: 161 NGSNGLGISLIRNLRHLSQEQNRNYICQEYIANPFLIDGLKFDMRVYTLITSFDPMRIYV 220
G GI + +I QE+I L L V L + + +
Sbjct: 142 TACAGEGIGFSDEV-------PDGHIAQEFIEGINLSVSLAVGEDVKCLSVNEQIINNFR 194
Query: 221 HKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVNKHSISFIHDEEV 266
+ +V + + + + + ++ ++
Sbjct: 195 YAGAVVPARISDEVKREVVEEAVRAVECVEGLNGYVGVDIVYSDQP 240
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1,
inositol 1,3,4-5/6 phosphate, inositol phosphate,
inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB:
2qb5_A* 2odt_X
Length = 346
Score = 36.3 bits (83), Expect = 0.028
Identities = 39/293 (13%), Positives = 86/293 (29%), Gaps = 68/293 (23%)
Query: 76 DVLWSDPCIGPDTHRRMKRFQR----------TNHFPLIMELCRKNLLAKNLNQMKIQYP 125
DV+ + + RFQ + P I L ++ + + +++
Sbjct: 73 DVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYME 132
Query: 126 NDYNFFP-QTWILPRDNREVHAFLTSKKAT--VIVKPD--NGSNGLGISLIRNLRHLSQE 180
+D P + + L T I K +G+N ++++ N L+
Sbjct: 133 DDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAI 192
Query: 181 QNRNYICQEYIANPFLIDGLKFDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGN 240
+ Q +I + +V+ + +RP N
Sbjct: 193 -QPPCVVQNFINHNA------VLYKVFVV-------------GESYTVV----QRPSLKN 228
Query: 241 LTNKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKT 300
+ + N H++S V ++ + + D+VI +
Sbjct: 229 FSAGTSDRESIFFNSHNVSKPESSSVLTE------------LDKIEGVFERPSDEVIREL 276
Query: 301 VLSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILLD-DTLNPYVLEVNHSPSF 352
+ + L G DI+++ T V+++N P +
Sbjct: 277 SRALRQALG----------------VSLFGIDIIINNQTGQHAVIDINAFPGY 313
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 35.2 bits (80), Expect = 0.050
Identities = 16/82 (19%), Positives = 24/82 (29%)
Query: 569 PKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIIS 628
P+ P +K P P P+ A P K + K +
Sbjct: 63 PRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNED 122
Query: 629 KLVTIPSKSVNPKPTKPAVAKG 650
V + ++ K KP KG
Sbjct: 123 GDVIGHALAMEGKVMKPLHVKG 144
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 35.5 bits (81), Expect = 0.063
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 15/91 (16%)
Query: 567 KVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANI 626
+ + +H+ P+ S + AA P + PA P +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMV-IPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAG-- 59
Query: 627 ISKLVTIPSKSVNPKPTKPAVAKGQRRSKAP 657
NP T + QR + P
Sbjct: 60 ------------NPPDTVTGDSVLQRILRGP 78
Score = 34.7 bits (79), Expect = 0.096
Identities = 16/103 (15%), Positives = 21/103 (20%), Gaps = 8/103 (7%)
Query: 557 DDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKP 616
+ V P+ L + P PA P P
Sbjct: 6 HHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAP----PPPPAPAAGNP 61
Query: 617 TNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKGQRRSKAPPE 659
+ + L I P T A A R P
Sbjct: 62 PDTVTGDS----VLQRILRGPTGPGTTSLAPAVRYGRQPGPEA 100
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia,
vesicle T structural genomics, structural genomics
consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo
sapiens}
Length = 344
Score = 35.2 bits (80), Expect = 0.072
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 13/66 (19%)
Query: 147 FLTSKKATVIVKPDNGSNGLGISLIRNLRHLS------QEQNRNYICQEYIANPFLIDGL 200
+T+ V+VK + G+G + N + +I +
Sbjct: 164 MVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFIDS------- 216
Query: 201 KFDMRV 206
K+D+R+
Sbjct: 217 KYDIRI 222
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.12
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 5/29 (17%)
Query: 577 KKPVKPTHVPLKP-ANSPKPTSVPAKAAN 604
K+ +K LK A S PA A
Sbjct: 19 KQALKKLQASLKLYA----DDSAPALAIK 43
Score = 27.6 bits (60), Expect = 10.0
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 5/29 (17%)
Query: 540 KDVEDKAKQLNVPKVLVDDKPKPAIQVKV 568
K ++ K L D P AI+ +
Sbjct: 23 KKLQASLK-LYAD----DSAPALAIKATM 46
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 33.7 bits (76), Expect = 0.20
Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 14/82 (17%)
Query: 132 PQTWILPRDNREVHAFLTSK-KATVIVKPDNGSNGLGISLIRNLRHLS------QEQNRN 184
+ ++ + H + S V+VK + +G+G + N
Sbjct: 243 EEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTY 302
Query: 185 YICQEYIANPFLIDGLKFDMRV 206
+ +I K+D+RV
Sbjct: 303 ATAEPFIDA-------KYDVRV 317
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
histolytica} PDB: 1z2o_X* 1z2p_X*
Length = 324
Score = 32.9 bits (74), Expect = 0.33
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 327 QLLGFDILLD-DTLNPYVLEVNHSPSF 352
QL G D + + + NP V++VN PS+
Sbjct: 275 QLCGIDFIKENEQGNPLVVDVNVFPSY 301
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A
Length = 317
Score = 32.5 bits (75), Expect = 0.40
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 324 ACFQLLG------FDILLDDTLNPYVLEVNHSPSFYTDT 356
F +LG D +LD N Y LEVN +P TD
Sbjct: 252 RAFDVLGCTDWGRADFMLDAAGNAYFLEVNTAPGM-TDH 289
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus
norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A
1aux_A*
Length = 309
Score = 32.4 bits (73), Expect = 0.42
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 13/73 (17%)
Query: 143 EVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLS------QEQNRNYICQEYIANPFL 196
LT V+VK + +G+G + N + +I
Sbjct: 143 NHREMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDA--- 199
Query: 197 IDGLKFDMRVYTL 209
K+D+RV +
Sbjct: 200 ----KYDIRVQKI 208
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell
WALL, peptidoglycan synthesis, vancomycin, ADP binding;
HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2
d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Length = 306
Score = 32.5 bits (75), Expect = 0.43
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 324 ACFQLLG------FDILLDDTLNPYVLEVNHSPSFYTDT 356
+ LG D++LD Y+LE N SP T
Sbjct: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGM-TSH 280
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 31.9 bits (73), Expect = 0.64
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 139 RDNREVHAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQEQNRNYICQEYIANPFLID 198
R+ E+ L + K VIVK + GI + + N + +++
Sbjct: 131 RNENELKNALENLKLPVIVKATDLQGSKGIYIAKKEEEA--IDGFNETMNLTKRDYCIVE 188
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
2.95A {Streptococcus agalactiae serogroup V}
Length = 750
Score = 32.2 bits (73), Expect = 0.69
Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 20/116 (17%)
Query: 89 HRRMKRFQRTNHFPLIMEL--CRKNLLAKNLNQMKIQYPNDYNFFPQTWILPRDNREVHA 146
+K T+ I+ L K + K L++ P F D +E
Sbjct: 462 IEYVKNGNMTSKDNYIVPLAMANKVVTKKILDEKHFPTPFGDEF--------TDRKEALN 513
Query: 147 FLTSKKAT-VIVKPDNGSNGLGISLIRNLR---------HLSQEQNRNYICQEYIA 192
+ + + ++VKP + + GLGIS+ + ++ ++ + +EYI
Sbjct: 514 YFSQIQDKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDIAFTEDSAILVEEYIE 569
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 32.2 bits (71), Expect = 0.70
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 559 KPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPT 617
V VPK+ ++ PVKPT P KP + PA A K + P +
Sbjct: 434 LNGKIRAVNVPKVTKEKPTPPVKPTA-PTKPTYETEKPLKPAPVAPNYEKEPTPPTRLE 491
Score = 29.5 bits (64), Expect = 4.7
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 15/70 (21%)
Query: 579 PVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSKSV 638
++ +VP P P P P KPT + KP P+
Sbjct: 437 KIRAVNVPKVTKEKPTPPVKPTA-----------PTKPTYETEKPLK---PAPVAPNYEK 482
Query: 639 NP-KPTKPAV 647
P PT+
Sbjct: 483 EPTPPTRLEH 492
Score = 29.1 bits (63), Expect = 5.6
Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 3/90 (3%)
Query: 562 PAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSA 621
P V V + VP K K ++ + N ++ ++P
Sbjct: 394 PNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIW-YSLNGKIRAVNVPKVTKEKPT 452
Query: 622 KPA--NIISKLVTIPSKSVNPKPTKPAVAK 649
P +K K + P P P K
Sbjct: 453 PPVKPTAPTKPTYETEKPLKPAPVAPNYEK 482
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB:
3chx_A
Length = 419
Score = 31.6 bits (71), Expect = 1.0
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 573 QKPAKKPVKPTHVPLKPANSPKPTSVPAKAAN--IPAKSTSIPAKPTNNSAKPANI 626
Q +KP+ P + + +P + +I K N +++P +
Sbjct: 261 QAGLQKPLTPIETEGTVGVGKEQVTTELNGGVYKVPGRELTINVKVKNGTSQPVRL 316
>2nnc_A Sulfur covalently-binding protein; sulfur binding protein, SOXY,
beta sandwich, green sulfur BA ligand binding protein;
2.14A {Chlorobium limicola} PDB: 2nnf_A
Length = 124
Score = 29.4 bits (66), Expect = 1.8
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 533 PRDSYNRKDVEDKAKQLNVPKVLVDDKPKPAIQVKVPKIAQKPAKKPVK 581
+++ ++D + + AIQ+K P+IA+ A PV
Sbjct: 5 SEKAFSASKLDDAIAAKFGSLPIQEST---AIQIKAPEIAENGAFVPVT 50
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 29.7 bits (66), Expect = 3.4
Identities = 4/84 (4%), Positives = 13/84 (15%), Gaps = 13/84 (15%)
Query: 575 PAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIP 634
P +P + A A +
Sbjct: 21 AQAFVELENSSPEL-KAELRPLQFKSIREIDVAGGKKALAIFVPVPSL------------ 67
Query: 635 SKSVNPKPTKPAVAKGQRRSKAPP 658
+ + + + + +
Sbjct: 68 AGFHKVQTKLTRELEKKFQDRHVI 91
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 29.4 bits (65), Expect = 4.2
Identities = 9/47 (19%), Positives = 14/47 (29%)
Query: 553 KVLVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVP 599
+ P + P +KP++P V N P P
Sbjct: 302 NINAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKT 348
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator,
structural genomics, structural genomics consortium,
SGC, hydrolase activator; 2.10A {Homo sapiens} PDB:
3dzx_A
Length = 345
Score = 29.5 bits (66), Expect = 4.2
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 10/59 (16%)
Query: 74 LWDVLWSDPCIGPDTHRRM---------KRFQRTNHFPLIMELCRKNLLAKNLNQMKIQ 123
LWD S+P H + K F ++ + NL + + I
Sbjct: 266 LWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQ-NLPTAHWDDEDIS 323
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 4.8
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 378 SSIKRKVLQEERLEVQRRLFKRPEREEDEEDRQGCKERQWAWERA 422
+ R + E + R ++ +E D + E++W E+A
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKV--MEQEW-REKA 116
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 28.8 bits (64), Expect = 5.3
Identities = 18/96 (18%), Positives = 24/96 (25%), Gaps = 12/96 (12%)
Query: 555 LVDDKPKPAIQVKVPKIAQKPAKKPVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPA 614
L + + + P K K P K
Sbjct: 51 LALQPKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSK-----------PGKRMRNCM 99
Query: 615 KPTNNSAKPANIISKLVTIPSKSVNPKPTKPAVAKG 650
K N+ P + K V + V K KPA KG
Sbjct: 100 KIENDCIFPVMLDGK-VNGYACLVGDKVMKPAHVKG 134
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase,
hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces
cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A
2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A*
2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A
Length = 286
Score = 28.7 bits (64), Expect = 6.2
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 123 QYPNDYNFFPQTW 135
Y ++Y FPQTW
Sbjct: 88 GYIHNYGAFPQTW 100
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Length = 169
Score = 27.9 bits (61), Expect = 7.4
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 391 EVQRRLFKRPEREEDEEDRQGCKERQWAWER 421
E RR F EE+ +E +WA +R
Sbjct: 139 EEIRRTFNIVNDFTPEEEAAIRRENEWAEDR 169
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate
aminotransferase, archaea, thermococcus L transferase;
HET: PMP; 2.30A {Thermococcus litoralis}
Length = 407
Score = 28.7 bits (65), Expect = 7.6
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 415 RQWAWERAHMGNFRLLYPCQDGDKYDSMCRAIE 447
++ +E+ H+ L Y +K D M +A+E
Sbjct: 292 KRGYFEKYHLEGALLGY----KEKRDIMLKALE 320
>2b5l_C Nonstructural protein V; DDB1, SV5-V, beta propeller, propeller
cluster, zinc finger, protein binding/viral protein
complex; 2.85A {Simian virus 5} PDB: 2hye_B*
Length = 222
Score = 28.4 bits (62), Expect = 8.0
Identities = 13/83 (15%), Positives = 19/83 (22%)
Query: 579 PVKPTHVPLKPANSPKPTSVPAKAANIPAKSTSIPAKPTNNSAKPANIISKLVTIPSKSV 638
V T K P T + AA + ++ K + + I
Sbjct: 31 QVTGTSSLGKNTIPPGVTGLLTNAAEAKIQESTNHQKGSVGGGAKPKKPRPKIAIVPADD 90
Query: 639 NPKPTKPAVAKGQRRSKAPPEAN 661
P KP P
Sbjct: 91 KTVPGKPIPNPLLGLDSTPSTQT 113
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol,
structural genomics, for structural genomics of
infectious diseases, csgid; HET: MSE ATP; 2.00A
{Bacillus anthracis} PDB: 3r23_A*
Length = 307
Score = 28.2 bits (64), Expect = 8.1
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 324 ACFQLLG------FDILLDDTLNPYVLEVNHSPSFYTDT 356
AC++ L D+++ D PYV+EVN P T
Sbjct: 237 ACYKALKCSVYARVDMMVKDG-IPYVMEVNTLPGM-TQA 273
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.400
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,740,026
Number of extensions: 645338
Number of successful extensions: 1473
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1441
Number of HSP's successfully gapped: 54
Length of query: 714
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 614
Effective length of database: 3,909,693
Effective search space: 2400551502
Effective search space used: 2400551502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)