RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13386
(714 letters)
>d1tu9a_ a.1.1.2 (A:) Hypothetical protein PA3967 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 131
Score = 32.3 bits (73), Expect = 0.076
Identities = 7/75 (9%), Positives = 20/75 (26%), Gaps = 2/75 (2%)
Query: 299 KTVLSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILLDDT--LNPYVLEVNHSPSFYTDT 356
+ L++ P I+ + + ++ + L +HS +
Sbjct: 25 RHFLASSPQIRAKFATTDMTAQKHLLRAGIMNLVMYARGMSDSKLRALGASHSRAALDIR 84
Query: 357 EIDVEIKEQVLRDTF 371
++ L
Sbjct: 85 PELYDLWLDALLMAV 99
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
Length = 228
Score = 33.1 bits (74), Expect = 0.078
Identities = 15/76 (19%), Positives = 23/76 (30%)
Query: 277 QWFCRMGYDTDLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILLD 336
Q YD + + V + P + + + D LLD
Sbjct: 114 QGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDFLLD 173
Query: 337 DTLNPYVLEVNHSPSF 352
+ PY+ E N P F
Sbjct: 174 ENNVPYLGEPNTLPGF 189
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
ATP-binding domain {Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 33.0 bits (74), Expect = 0.079
Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 4/65 (6%)
Query: 305 HPNIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSF---YTDTEIDVE 361
N A + L + V EVNH+ F T +D+
Sbjct: 121 AENCPLTEEVARLSVKAAEAVGGGVVAVDLFESERGLLVNEVNHTMEFKNSVHTTGVDI- 179
Query: 362 IKEQV 366
E +
Sbjct: 180 PGEIL 184
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
C-domain {Enterococcus faecium [TaxId: 1352]}
Length = 211
Score = 30.5 bits (67), Expect = 0.52
Identities = 11/110 (10%), Positives = 21/110 (19%), Gaps = 2/110 (1%)
Query: 245 YMHLTNYSVNKHSISFIHDEEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKTVLSA 304
+ + + + + V + A
Sbjct: 72 KILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPA 131
Query: 305 HPNIKTMYNSVFPRHNYMTACFQ--LLGFDILLDDTLNPYVLEVNHSPSF 352
+ + L D+ L D + EVN P F
Sbjct: 132 DLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDNGRIVLNEVNTLPGF 181
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 206
Score = 29.6 bits (65), Expect = 0.95
Identities = 4/35 (11%), Positives = 8/35 (22%)
Query: 318 RHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSF 352
+ M + + Y+ EV
Sbjct: 146 ACSEMFGGLDICAVKAVHGKDGKDYIFEVMDCSMP 180
>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia
coli [TaxId: 562]}
Length = 880
Score = 30.5 bits (68), Expect = 0.97
Identities = 13/64 (20%), Positives = 31/64 (48%)
Query: 243 NKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKTVL 302
+++++L N + HSIS + + T+ + + D + ++ + ++ VL
Sbjct: 73 SQFLNLANTAEQYHSISPKGEAASNPEVIARTLRKLKNQPELSEDTIKKAVESLSLELVL 132
Query: 303 SAHP 306
+AHP
Sbjct: 133 TAHP 136
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain
{Escherichia coli, gene ddlB [TaxId: 562]}
Length = 210
Score = 29.3 bits (64), Expect = 1.4
Identities = 15/126 (11%), Positives = 32/126 (25%), Gaps = 18/126 (14%)
Query: 233 YERPKQGNLTNKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQWFCRMGYDTDLVWSR 292
+ + ++ + + + I EE+ +I ++
Sbjct: 68 QDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKFLSDETQY 127
Query: 293 IDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLGF------DILLDDTLNPYVLEV 346
+ + + LG D++LD Y+LE
Sbjct: 128 ------------FCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEA 175
Query: 347 NHSPSF 352
N SP
Sbjct: 176 NTSPGM 181
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Pyrococcus furiosus
[TaxId: 2261]}
Length = 235
Score = 29.1 bits (64), Expect = 1.5
Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 11/84 (13%)
Query: 155 VIVKPDNGSNGLGISLIRN-----------LRHLSQEQNRNYICQEYIANPFLIDGLKFD 203
VIVKP G G L ++ L +E +N QEY+ + +
Sbjct: 30 VIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYS 89
Query: 204 MRVYTLITSFDPMRIYVHKDGIVR 227
L R + D I R
Sbjct: 90 KVREELELMSIDRRYESNVDAIGR 113
>d1u3ma_ d.6.1.1 (A:) Prion protein domain {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 117
Score = 27.6 bits (61), Expect = 2.2
Identities = 10/62 (16%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 311 MYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEIDVEIKEQVLRDT 370
Y+S P+ ++ CF + + + E + + T+ E++ ++ +V+R+
Sbjct: 47 DYSSPVPQDVFVADCFNITVTEYSIGPAAKKNTSEAVAAANQ-TEVEMENKVVTKVIREM 105
Query: 371 FI 372
+
Sbjct: 106 CV 107
>d1s28a_ d.198.1.1 (A:) AvrPphF ORF1, chaperone of AvrPphF ORF2
{Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
Length = 130
Score = 26.8 bits (59), Expect = 5.2
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 13/83 (15%)
Query: 196 LIDGL------------KFDMRVYTLITSFDPMRIYVHKDGIVRF-ATVKYERPKQGNLT 242
LIDGL K + VY +RIY K V F + + N
Sbjct: 10 LIDGLAKDYGMPGFPEKKHEHEVYCFEFKEVSIRIYQDKFKWVYFLSDIGVIDNLDSNAC 69
Query: 243 NKYMHLTNYSVNKHSISFIHDEE 265
+ L +++ + +E+
Sbjct: 70 QSLLRLNEFNLRTPFFTVGLNEK 92
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 168
Score = 27.0 bits (58), Expect = 5.4
Identities = 22/177 (12%), Positives = 51/177 (28%), Gaps = 21/177 (11%)
Query: 376 LNSSIKRKVLQEERLEVQRRLFKRPEREEDEEDRQGCKERQWAWERAHMGNFRLLYPCQD 435
L++S+ K L E+ +V + ++++ ++ + + ++
Sbjct: 12 LDTSVILKWLCEKGFDVIAYVANVGQKDDFVAIKEKALKTGASKVYVED-------LRRE 64
Query: 436 GDKYDSMCRAIESASYYKDTFSSNMRSMLGRAHRQDIDMRRDNHGVTPRPSKDTLDSIYG 495
+ +A Y + A RQ ++ +
Sbjct: 65 FVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGA-----------QYVAH 113
Query: 496 KKRRKPGDDVALMKKPSVRTNKTKVVKPVQTKRKVETPRDSYNRKDVEDKAKQLNVP 552
K D V + KV+ P + E R D+ + A + +P
Sbjct: 114 GATGKGNDQVRFELTYAALNPNLKVISPW---KDPEFLAKFKGRTDLINYAMEKGIP 167
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Methanocaldococcus
jannaschii [TaxId: 2190]}
Length = 238
Score = 27.0 bits (59), Expect = 7.6
Identities = 15/96 (15%), Positives = 24/96 (25%), Gaps = 13/96 (13%)
Query: 155 VIVKPDNGSNGLGISLIRNLRHL-------------SQEQNRNYICQEYIANPFLIDGLK 201
VIVK G G + + + E N +EY+
Sbjct: 30 VIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHYF 89
Query: 202 FDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPK 237
+ + R + DG+VR
Sbjct: 90 YSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMN 125
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.400
Gapped
Lambda K H
0.267 0.0460 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,657,828
Number of extensions: 128036
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 20
Length of query: 714
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 622
Effective length of database: 1,144,436
Effective search space: 711839192
Effective search space used: 711839192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.0 bits)