RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13388
(196 letters)
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 135 bits (340), Expect = 3e-39
Identities = 58/103 (56%), Positives = 72/103 (69%), Gaps = 2/103 (1%)
Query: 94 LNRTERDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPK 151
L E LPHH+E+TW V +++R QAE +LSG+ DGTFLIR S+ G YA S+V G K
Sbjct: 181 LMEDEDALPHHEERTWYVGKINRTQAEEMLSGKRDGTFLIRESSQRGCYACSVVVDGDTK 240
Query: 152 HCLVYETERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLI 194
HC++Y T GFGFAEP+N+Y SL LVLHY SL +HND L
Sbjct: 241 HCVIYRTATGFGFAEPYNLYGSLKELVLHYQHASLVQHNDALT 283
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex
(phosphotransferase/receptor), phosphotransferase, SH2
domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1
PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A
Length = 112
Score = 127 bits (321), Expect = 2e-38
Identities = 53/96 (55%), Positives = 67/96 (69%), Gaps = 2/96 (2%)
Query: 101 LPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYET 158
+PHHDEKTW V +R +AE LL G+ DGTFL+R S+ G YA S+V G KHC++ +T
Sbjct: 4 IPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKT 63
Query: 159 ERGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLI 194
G+GFAEP+N+Y SL LVLHY SL +HND L
Sbjct: 64 ATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLN 99
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5-
triphosphate, wortmannin, H1047R, ATP-binding, disease
mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB:
3hiz_B 2rd0_B 4a55_B* 3mtt_A
Length = 373
Score = 112 bits (281), Expect = 5e-30
Identities = 46/86 (53%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Query: 94 LNRTERDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPK 151
L + DLPHHDEKTW V +R +AE LL G+ DGTFL+R S+ G YA S+V G K
Sbjct: 288 LVEDDEDLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVK 347
Query: 152 HCLVYETERGFGFAEPFNIYPSLGAL 177
HC++ +T G+GFAEP+N+Y SL L
Sbjct: 348 HCVINKTATGYGFAEPYNLYSSLKEL 373
Score = 93.0 bits (230), Expect = 8e-23
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 112 RMSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPF 168
+SR + L DGTFL+R ++T G Y L++ G K ++ + +GF++P
Sbjct: 16 DISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPL 75
Query: 169 NIYPSLGALVLHYAANSLEEHNDDLI 194
+ S+ L+ HY SL ++N L
Sbjct: 76 T-FSSVVELINHYRNESLAQYNPKLD 100
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 99.6 bits (249), Expect = 1e-27
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 103 HHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETE 159
+ W M R Q + LL GT+LIR ++A+SI + KH V E +
Sbjct: 12 DYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKD 71
Query: 160 RGFGFAEPFNIYPSLGALVLHYAANSLEEHNDDLI 194
E + SL LV +Y +SL+E L
Sbjct: 72 NWIHITEAKK-FDSLLELVEYYQCHSLKESFKQLD 105
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*
Length = 138
Score = 93.6 bits (233), Expect = 5e-25
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 112 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 169
M RA AE++L+ R DGTFL+R ++A+SI + KH + E + E
Sbjct: 32 PMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEK-K 90
Query: 170 IYPSLGALVLHYAANSLEEHNDDL 193
+ L LV Y NSL++ L
Sbjct: 91 AFRGLTELVEFYQQNSLKDCFKSL 114
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide
binding protein; HET: PTR; 1.80A {Mus musculus} SCOP:
d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Length = 100
Score = 91.5 bits (228), Expect = 1e-24
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 112 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 169
+SR QAE LL G+ G F+IR S + G +++S+ +H V +G F
Sbjct: 15 GLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWT-E 73
Query: 170 IYPSLGALVLHYAANSLEEHNDDLI 194
+PSL LV +Y S+ + +
Sbjct: 74 KFPSLNKLVDYYRTTSISKQKQVFL 98
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit;
transferase, polymorphism, UBL conjugation,
phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo
sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A
1oo4_A* 2pna_A 2pnb_A
Length = 120
Score = 92.0 bits (229), Expect = 2e-24
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 112 RMSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPF 168
+SR + L DGTFL+R ++T G Y L++ G K ++ + +GF++P
Sbjct: 17 DISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPL 76
Query: 169 NIYPSLGALVLHYAANSLEEHNDDLI 194
+ S+ L+ HY SL ++N L
Sbjct: 77 T-FSSVVELINHYRNESLAQYNPKLD 101
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding
domain, protein tyrosine kinase, signal transduction,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 83.5 bits (207), Expect = 2e-21
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 101 LPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYE 157
+ ++ +W +SR+ AE LLS +G+FL+R S + GQ ++S+ G H +
Sbjct: 10 VNSLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINT 69
Query: 158 TERGFGFAEPFNIYPSLGALVLHYAANSLEEH 189
T G + + + +L LV H++ +
Sbjct: 70 TADGKVYVTAESRFSTLAELVHHHSTVADGLV 101
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2;
SH2, phosphoinositide phospholipase C, PLC-gamma-2,
phospholipase C-gamma-2; NMR {Rattus norvegicus}
Length = 124
Score = 81.2 bits (201), Expect = 3e-20
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 104 HDEKTWLV-RMSRAQAEALLSGRP-DGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETER 160
H+ K W R+SR +AE +L P DG FLIR T YA++ G KHC + R
Sbjct: 16 HESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGTDSYAITFRARGKVKHCRINRDGR 75
Query: 161 GFGFAEPFNIYPSLGALVLHYAANSLEEH 189
F + SL LV +Y ++L
Sbjct: 76 HFVLGTSAY-FESLVELVSYYEKHALYRK 103
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding
protein, antibody mimic, protein-protein SH2 domain,
ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB:
3uyo_A 3t04_A 1ab2_A
Length = 112
Score = 79.6 bits (197), Expect = 8e-20
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 112 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 169
+SR AE LLS +G+FL+R S + GQ ++S+ G H + G + +
Sbjct: 11 PVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSES 70
Query: 170 IYPSLGALVLHYAANS 185
+ +L LV H++ +
Sbjct: 71 RFNTLAELVHHHSTVA 86
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain,
phosphotyrosine binding, signaling protein, signaling
protein-antagonist complex; HET: PTR; 1.60A {Homo
sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A*
3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A*
2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A*
1fyr_A* ...
Length = 117
Score = 79.3 bits (196), Expect = 1e-19
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 112 RMSRAQAEALLS-GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 168
++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G F
Sbjct: 12 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV- 70
Query: 169 NIYPSLGALVLHYAANSL 186
+ SL LV ++ + S+
Sbjct: 71 VKFNSLNELVDYHRSTSV 88
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 121
Score = 78.9 bits (195), Expect = 2e-19
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 102 PHHDEKTWLV-RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVY 156
+ W + RA AE L S G FLIR S + G ++LS++ G KH +
Sbjct: 11 RSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIR 70
Query: 157 ETERGFGFAEPFNIYPSLGALVLHYAANSL 186
+ G F ++ +L V +Y S
Sbjct: 71 RLDEGGFFLTRRKVFSTLNEFVNYYTTTSD 100
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal
transduction inhibitor, KIT regula phosphotyrosine,
signaling protein; HET: PTR; 1.45A {Homo sapiens}
Length = 141
Score = 79.1 bits (195), Expect = 2e-19
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 99 RDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLV 155
+L ++ W ++R +AE L+ PDG+FL+R S+ +LS G H +
Sbjct: 16 EELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRI 75
Query: 156 YETERGFGFAEP--FNIYPSLGALVLHYAANSL 186
+ F F E + S+ L+ H +S
Sbjct: 76 EHSNGRFSFYEQPDVEGHTSIVDLIEHSIGDSE 108
>1jyr_A Growth factor receptor-bound protein 2; receptor binding,
regulatory, inhibitor, signaling protein-I complex; HET:
PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A*
1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E*
1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Length = 96
Score = 78.0 bits (193), Expect = 2e-19
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 112 RMSRAQAEALLS-GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 168
++ RA+AE +LS R DG FLIR S + G ++LS+ +H V G F
Sbjct: 9 KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV- 67
Query: 169 NIYPSLGALVLHYAANSLEE 188
+ SL LV ++ + S+
Sbjct: 68 VKFNSLNELVDYHRSTSVSR 87
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 119
Score = 77.4 bits (191), Expect = 5e-19
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
Query: 95 NRTERDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTTGQ-YALSIVCSGAPKH 152
+ L W +SR AE LL +P G+FLIR S + Y LS + H
Sbjct: 4 GSSGGQLAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVGYTLSYKAQSSCCH 63
Query: 153 CLVYETERGFGF-AEPFNIYPSLGALVLHYAANSLEEHNDDL 193
+V + G + SL ALV + +E + L
Sbjct: 64 FMVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPIEPRRELL 105
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain,
signaling protein, structural genomics, joint CE
structural genomics, JCSG; 1.50A {Homo sapiens} PDB:
1jwo_A
Length = 98
Score = 76.8 bits (190), Expect = 6e-19
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 112 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 169
++S +A L DG FL+R S G Y L + H V + E
Sbjct: 11 KISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDEA-V 69
Query: 170 IYPSLGALVLHYAANSL 186
+ +L +V HY+ +
Sbjct: 70 FFCNLMDMVEHYSKDKG 86
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 111
Score = 76.9 bits (190), Expect = 7e-19
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 104 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETER 160
D W + +SR +A+ L G+ G FL+R S+T G Y LS+ + H ++
Sbjct: 16 SDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPN 75
Query: 161 GFGFAEPFNIYPSLGALVLHYAANSL 186
+ L AL+ Y + L
Sbjct: 76 RRFKIGD-QEFDHLPALLEFYKIHYL 100
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain;
HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1
PDB: 1csy_A* 1csz_A*
Length = 254
Score = 80.3 bits (198), Expect = 7e-19
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 112 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 167
++R +AE L G DG +L+R S G +ALS+ H + G
Sbjct: 11 NITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAG 70
Query: 168 FNIYPSLGALVLHYAANS 185
+ S L +++ S
Sbjct: 71 GRTHASPADLCHYHSQES 88
Score = 80.0 bits (197), Expect = 1e-18
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 102 PHHDEKTWLV-RMSRAQAEALL--SGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYE 157
H++ W ++SR ++E ++ + +G FLIR G YAL ++ G H + +
Sbjct: 153 TAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNNGSYALCLLHEGKVLHYRIDK 212
Query: 158 TERGFGFAEPFNIYPSLGALVLHYAANS 185
+ G + +L LV HY+ +
Sbjct: 213 DKTGKLSIPEGKKFDTLWQLVEHYSYKA 240
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced,
ATP-binding, cell membrane, cytoplasm, membrane,
nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens}
PDB: 3eac_A
Length = 106
Score = 76.5 bits (189), Expect = 9e-19
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 112 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 169
+++R QAE LL G FL+R ST G Y L + G +H + E
Sbjct: 14 KITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSIDEE-V 72
Query: 170 IYPSLGALVLHYAANSL 186
+ +L LV HY +++
Sbjct: 73 YFENLMQLVEHYTSDAD 89
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein
binding/transferase complex; HET: PTR; NMR {Homo
sapiens} SCOP: d.93.1.1
Length = 109
Score = 76.4 bits (188), Expect = 1e-18
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 18/96 (18%)
Query: 112 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 169
R+SR +A ALL G+ G FL+R S+T G Y LS+ + H ++ +
Sbjct: 6 RLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPA 65
Query: 170 I----------------YPSLGALVLHYAANSLEEH 189
+ SL AL+ Y + L+
Sbjct: 66 QPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTT 101
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor,
growth regulation, signal transduction, SH2 domain,
nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1
d.93.1.1
Length = 187
Score = 78.4 bits (193), Expect = 1e-18
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 100 DLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVY 156
DL + M + AEALL G+P+GTFL+R S +++S H +
Sbjct: 27 DLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIE 86
Query: 157 ETERGFGFAE---PFNIYPSLGALVLHYAANSL 186
+ F F P + L+ HY S
Sbjct: 87 QWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSA 119
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain,
protein protein interactions, PTR residues, HYDR peptide
complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A*
1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Length = 109
Score = 75.8 bits (187), Expect = 2e-18
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 112 RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPF 168
++ +AE LL R DG+FL RPS + G + LS+ +GA H + T +
Sbjct: 13 NITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGG- 71
Query: 169 NIYPSLGALVLHYAANSL 186
+ +L LV +Y +
Sbjct: 72 EKFATLAELVQYYMEHHG 89
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70,
tyrosine kinase, transferase; HET: PTR; 1.90A {Homo
sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A
Length = 254
Score = 78.4 bits (193), Expect = 4e-18
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 102 PHHDEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYE 157
H+ W ++R +AE L + DG FL+RP G YALS++ H L+ +
Sbjct: 154 TAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQGTYALSLIYGKTVYHYLISQ 213
Query: 158 TERGFGFAEPFNIYPSLGALVLHYAANS 185
+ G + +L LV + +
Sbjct: 214 DKAGKYCIPEGTKFDTLWQLVEYLKLKA 241
Score = 76.1 bits (187), Expect = 4e-17
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 112 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 167
+SRA+AE L +G DG FL+R G Y LS+V H + G
Sbjct: 12 SISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAG 71
Query: 168 FNIYPSLGALVLHYAANS 185
+ L Y+ +
Sbjct: 72 GKAHCGPAELCEFYSRDP 89
>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition,
tandem SH2 domains, A analog, ATP-binding,
craniosynostosis, disease mutation; HET: PTR DVT ACP;
2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A*
Length = 226
Score = 77.6 bits (191), Expect = 6e-18
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 102 PHHDEKTWLV-RMSRAQAEALLSGRP-DGTFLIRPSTT-GQYALSIVCSGAPKHCLVYET 158
H+ K W ++RAQAE +L P DG FL+R YA+S G KHC V +
Sbjct: 117 NAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQE 176
Query: 159 ERGFGFAEPFNIYPSLGALVLHYAANSL 186
+ + + SL L+ +Y + L
Sbjct: 177 GQTVML--GNSEFDSLVDLISYYEKHPL 202
Score = 66.9 bits (163), Expect = 5e-14
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 17/104 (16%)
Query: 104 HDEKTW------LVRMSRAQAEALL------SGRPDGTFLIRPSTT--GQYALSIVCSGA 149
H + W R R AE LL +G PDG+FL+R S T G Y LS +G
Sbjct: 1 HSSEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGK 60
Query: 150 PKHCLVYETE---RGFGFAEPFNIYPSLGALVLHYAANSLEEHN 190
+HC ++ + F ++ SL L+ HY L +
Sbjct: 61 VQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNE 104
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation,
binding specificity; HET: PTR MPD; 1.45A {Homo sapiens}
PDB: 1z3k_A 2ci9_A* 2ci8_A*
Length = 102
Score = 73.8 bits (182), Expect = 9e-18
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 112 RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFA-EP 167
++R QAE L+ R +G FLIR S + +++S+ SG KH V + +
Sbjct: 11 NVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQRR 70
Query: 168 FNIYPSLGALVLHYAANSL-EEHNDDLIFL 196
F ++ LV HY + + + ++L
Sbjct: 71 F---HTMDELVEHYKKAPIFTSEHGEKLYL 97
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain,
signal transduction inhibitor nuclear protein; 1.9A
{Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Length = 169
Score = 75.6 bits (186), Expect = 9e-18
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 113 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 170
M+ +A+ L P+GTFLIR S+ +S+ S P + + + F +
Sbjct: 24 MTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGKFRLDSIICV 83
Query: 171 ------YPSLGALVLHYAANSL 186
+ S+ L+ +Y
Sbjct: 84 KSKLKQFDSVVHLIDYYVQMCK 105
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase;
NMR {Homo sapiens}
Length = 125
Score = 74.7 bits (184), Expect = 9e-18
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 94 LNRTERDLPHHDEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIVCS--- 147
+ E + ++ W M+R+QAE LL +G F++R S+ G+Y +S+
Sbjct: 1 MTEAEDSIEMYE---WYSKHMTRSQAEQLLKQEGKEGGFIVRDSSKAGKYTVSVFAKSTG 57
Query: 148 ---GAPKHCLVYETERGFGFAEPFNIYPSLGALVLHYAANSL 186
G +H +V T + + +++ ++ L+ ++ NS
Sbjct: 58 DPQGVIRHYVVCSTPQSQYYLAEKHLFSTIPELINYHQHNSA 99
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal
transduction lymphocyte, signaling protein; HET: PTR;
2.15A {Mus musculus} SCOP: d.93.1.1
Length = 103
Score = 73.5 bits (181), Expect = 1e-17
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 112 RMSRAQAEALL-SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 163
+++ + EALL G DG FLIR S + G L + ++ + G+
Sbjct: 9 CLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETD 68
Query: 164 FAEPFNIYPSLGALVLHYAANS 185
P I+P+L LV Y
Sbjct: 69 AHTPRTIFPNLQELVSKYGKPG 90
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development,
SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 116
Score = 73.5 bits (181), Expect = 2e-17
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 112 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF-AEPF 168
+ R +A+ LL + G FL+R S G+Y LS+ G +H ++ + + F F
Sbjct: 23 AIPRIEAQELL--KKQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDNMYRFEGTGF 80
Query: 169 NIYPSLGALVLHYAANSLEEHNDDLIFL 196
++ L+ H+ + L
Sbjct: 81 ---SNIPQLIDHHYTTKQVITKKSGVVL 105
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 125
Score = 73.9 bits (182), Expect = 2e-17
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 104 HDEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIV------CSGAPKHCL 154
+ W ++R QAE LL +G F++R S G Y +S+ A KH
Sbjct: 13 LEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSRHLGSYTISVFMGARRSTEAAIKHYQ 72
Query: 155 VYETERGFGFAEPFNIYPSLGALVLHYAANSL 186
+ + + G + + + S+ L+ ++ N+
Sbjct: 73 IKKNDSGQWYVAERHAFQSIPELIWYHQHNAA 104
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6
(PTK6/BRK), SRC homology 2(S domain, solution structure,
backbone dynamics, transferase; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 100
Score = 72.6 bits (179), Expect = 3e-17
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 112 RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 167
+SR++A L G G FLIR S Y LS+ + A +H ++ G
Sbjct: 8 CISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNE 67
Query: 168 FNIYPSLGALVLHYAANSL 186
+ SL LV ++ A SL
Sbjct: 68 AVSFLSLPELVNYHRAQSL 86
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform;
adapter protein, signaling protein; 2.00A {Mus musculus}
PDB: 2hdx_A* 1rpy_A 1rqq_C*
Length = 111
Score = 72.3 bits (178), Expect = 5e-17
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 112 RMSRAQAEALL---SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAE 166
+SR +A L+ G FL+R S T G+ L+ G KH + G +
Sbjct: 15 MLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAGQCRVQ 74
Query: 167 PFNIYPSLGALVLHYAANSL 186
+ S+ ++ H+ + +
Sbjct: 75 -HLHFQSIFDMLEHFRVHPI 93
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 110
Score = 72.3 bits (178), Expect = 5e-17
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 104 HDEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIVCS------GAPKHCL 154
D+ W +SR+Q+E LL +G F++R S+ G Y +S+ G KH
Sbjct: 8 LDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQVGMYTVSLFSKAVNDKKGTVKHYH 67
Query: 155 VYETERGFGFAEPFNIYPSLGALVLHYAANSL 186
V+ + + S+ L+ ++ NS
Sbjct: 68 VHTNAENKLYLAENYCFDSIPKLIHYHQHNSA 99
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth
regulation, transforming protein, alternative
initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB:
1tce_A*
Length = 104
Score = 70.8 bits (174), Expect = 1e-16
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 112 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 169
++SR +AEALL + +G FL+R STT GQY L+ + SG PKH L+ + E +
Sbjct: 13 KLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHR- 69
Query: 170 IYPSLGALVLHYAANSL 186
+ S+ L+ ++ N L
Sbjct: 70 -FESVSHLISYHMDNHL 85
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2
subdomain, PEST motif, protein complex, cytokine
regulator; HET: PTR; NMR {Mus musculus}
Length = 164
Score = 72.3 bits (177), Expect = 2e-16
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 113 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF------ 164
++ +A LLS P GTFLIR S+ + LS+ K+ + F
Sbjct: 30 VTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGGSFSLQSDPRS 89
Query: 165 AEPFNIYPSLGALVLHYAANSL 186
+P + + LV HY
Sbjct: 90 TQPVPRFDCVLKLVHHYMPPPG 111
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein;
1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Length = 105
Score = 70.4 bits (173), Expect = 2e-16
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 112 RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG----FG 163
R+SR ++ ++ G DG FL+R S + + L++ K+ + E F
Sbjct: 11 RISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFS 70
Query: 164 FAEPFNIYPSLGALVLHYAANS 185
+ + L LV Y N
Sbjct: 71 LDDGNTKFSDLIQLVDFYQLNK 92
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine,
tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo
sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Length = 117
Score = 70.8 bits (174), Expect = 2e-16
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 112 RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERG----FG 163
R+SR +++ L+ G DG FL+R S + LS+ KH L+ +E F
Sbjct: 20 RISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFS 79
Query: 164 FAEPFNIYPSLGALVLHYAANS 185
+ + L LV + N
Sbjct: 80 MDDGQTRFTDLLQLVEFHQLNR 101
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET:
PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A*
1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L*
1cwe_A*
Length = 105
Score = 69.6 bits (171), Expect = 4e-16
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 112 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVYETERGF 162
+SR AE L G G+FLIR S + G ++LS+ KH + + G
Sbjct: 10 NLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGG 69
Query: 163 GFAEPFNIYPSLGALVLHYAANS 185
+ P +P L LV HY S
Sbjct: 70 FYISPRITFPGLHELVRHYTNAS 92
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine
kinase, signal transduction, peptide recognition,
signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1
PDB: 1d1z_A 1d4w_A* 1m27_A*
Length = 104
Score = 69.7 bits (171), Expect = 5e-16
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 112 RMSRAQAEALL-SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 163
++SR E LL + DG++L+R S + G Y L ++ G V +TE G
Sbjct: 10 KISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETA 69
Query: 164 FAEPFNIYPSLGALVLHYAANS 185
+ + L+ +
Sbjct: 70 PGVHKRYFRKIKNLISAFQKPD 91
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 119
Score = 69.2 bits (170), Expect = 7e-16
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 112 RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 163
++R++AE LLS DG+FL+R S + YAL ++ + E
Sbjct: 16 NITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTVQAS 75
Query: 164 FAEPFNIYPSLGALVLHYAANSL 186
+ L L+ Y ++
Sbjct: 76 EGVSMRFFTKLDQLIEFYKKENM 98
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune
system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB:
1ka7_A
Length = 128
Score = 69.4 bits (170), Expect = 8e-16
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 112 RMSRAQAEALL-SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGF-----G 163
++SR E LL + DG++L+R S + G Y L ++ G V +TE G
Sbjct: 10 KISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETA 69
Query: 164 FAEPFNIYPSLGALVLHYAANS 185
+ + L+ +
Sbjct: 70 PGVHKRYFRKIKNLISAFQKPD 91
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide
complex, cytokine regulator; HET: PTR; 2.00A {Mus
musculus}
Length = 152
Score = 69.6 bits (170), Expect = 1e-15
Identities = 26/124 (20%), Positives = 40/124 (32%), Gaps = 11/124 (8%)
Query: 81 PDTSCPPMPSLSA--LNRTERDLPHHDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT 137
DTS S + E + ++ +A LLS P GTFLIR S+
Sbjct: 6 LDTSLRLKTFSSKSEYQLVVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSD 65
Query: 138 --GQYALSIVCSGAPKHCLVYETERGFGF------AEPFNIYPSLGALVLHYAANSLEEH 189
+ LS+ K+ + F +P + + LV HY
Sbjct: 66 QRHFFTLSVKTQSGTKNLRIQXEGGSFSLQSDPRSTQPVPRFDXVLKLVHHYMPPQALPG 125
Query: 190 NDDL 193
+
Sbjct: 126 STPK 129
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 119
Score = 68.1 bits (167), Expect = 2e-15
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 104 HDEKTWLV-RMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETE 159
H+ K W ++S+ +A LL +FL+RPS G Y+L + + + T
Sbjct: 13 HEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTP 72
Query: 160 RGFGFAEPFNIYPSLGALVLHYAANSLEEH 189
F Y S+G ++ HY + E
Sbjct: 73 NN-QFMMGGRYYNSIGDIIDHYRKEQIVEG 101
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1,
solution structure, cell junctio membrane, hydrolase,
membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Length = 131
Score = 68.4 bits (167), Expect = 2e-15
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 22/104 (21%)
Query: 104 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAP---------- 150
K W +SR QA ALL + G FLIR S + G Y L++ + P
Sbjct: 17 DTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDP 76
Query: 151 -----KHCLVYETERGF---GFAEPFNIYPSLGALVLHYAANSL 186
+H L+ +G G + SL ALV ++ + +
Sbjct: 77 VEQLVRHFLIETGPKGVKIKGCPSEP-YFGSLSALVSQHSISPI 119
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2
domain, signaling protein; 2.30A {Homo sapiens}
Length = 126
Score = 67.4 bits (165), Expect = 5e-15
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 112 RMSRAQAEALLS--GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--- 164
++SR +A+ L+ G DG FL+R S + + LS+ KH + E
Sbjct: 32 KISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGEMFHT 91
Query: 165 -AEPFNIYPSLGALVLHYAANS 185
+ + L LV Y N
Sbjct: 92 LDDGHTRFTDLIQLVEFYQLNK 113
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 70.2 bits (172), Expect = 2e-14
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 112 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 169
+SR AE LLS +G+FL+R S + GQ ++S+ G H + G + +
Sbjct: 111 PVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSES 170
Query: 170 IYPSLGALVLHYAANSL 186
+ +L LV H++ +
Sbjct: 171 RFNTLAELVHHHSTVAD 187
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction,
peptide complex, complex (proto-oncogene/early protein);
HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Length = 106
Score = 65.0 bits (159), Expect = 3e-14
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 112 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCS-----GAPKHCLVYETERGF 162
++ R AE L G P GTFLIR S T G Y+LSI KH + + + G
Sbjct: 11 KLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGG 70
Query: 163 GFAEPFNIYPSLGALVLHYAANS 185
+ + +L LV HY+ +
Sbjct: 71 YYITTRAQFETLQQLVQHYSERA 93
>3maz_A Signal-transducing adaptor protein 1; modular domain,
phosphotyrosine, specificity, cytoplasm, phosphoprotein,
SH2 domain, signaling protein; HET: PTR; 1.90A {Homo
sapiens}
Length = 125
Score = 64.4 bits (157), Expect = 6e-14
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 112 RMSRAQAEALLSGRP-DGTFLIRPSTT-GQYALSIVCS---GAPKHCLVYETERGFGFA- 165
+SR +A +L P G ++RP + Y+++I KH V + +
Sbjct: 21 TVSRKEATEMLQKNPSLGNMILRPGSDSRNYSITIRQEIDIPRIKHYKVMSVGQNYTIEL 80
Query: 166 EPFNIYPSLGALVLHYAANS 185
E P+L +++ ++ +
Sbjct: 81 EKPVTLPNLFSVIDYFVKET 100
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain,
feline sarcoma oncogene, structural genomics; NMR {Homo
sapiens} PDB: 2dcr_A
Length = 114
Score = 63.9 bits (156), Expect = 7e-14
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 112 RMSRAQAEALLSGRPDGTFLIRPS-TTGQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 170
+ RA+ LL G FL+R S +Y LS++ G P+H ++ + +
Sbjct: 22 AIPRAEVAELL--VHSGDFLVRESQGKQEYVLSVLWDGLPRHFIIQSLDNLYRLEG--EG 77
Query: 171 YPSLGALVLHYAANSL 186
+PS+ L+ H +
Sbjct: 78 FPSIPLLIDHLLSTQQ 93
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell
adapter containing SH2 domain protein; NMR {Mus
musculus}
Length = 141
Score = 64.1 bits (156), Expect = 1e-13
Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 112 RMSRAQAEALL-SGRPDGTFLIRPSTT----GQYALSIVCSGAPKHCLVYETERGFGFA- 165
R AE L DG+FLIR S+ Y L + + V E +A
Sbjct: 29 ACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRFIEATKQYAL 88
Query: 166 ----EPFNIYPSLGALVLHYAANSL 186
+ S+ +V + N L
Sbjct: 89 GKKKNGEEYFGSVVEIVNSHQHNPL 113
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 64.3 bits (155), Expect = 1e-12
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 104 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETER 160
D W + +SR +A+ L G+ G FL+R S+T G Y LS+ + H ++
Sbjct: 9 SDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPN 68
Query: 161 GFGFAEPFNIYPSLGALVLHYAAN 184
F + L AL+ Y +
Sbjct: 69 RR-FKIGDQEFDHLPALLEFYKIH 91
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 63.5 bits (155), Expect = 2e-12
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 112 RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAE--P 167
+++R QAE LL G FL+R ST G Y L + C G +H + E
Sbjct: 86 KITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVY 145
Query: 168 FNIYPSLGALVLHYAANS 185
F +L LV HY ++
Sbjct: 146 F---ENLMQLVEHYTTDA 160
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS
proline, domain swapped dimer, SH transferase; HET: CIT;
2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A
1lum_A 1lun_A 2k79_B 2k7a_B
Length = 118
Score = 60.1 bits (146), Expect = 2e-12
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 104 HDEKTWLV-RMSRAQAEALL-SGRPDGTFLIRPSTT-GQYALSIVCSGAP------KHCL 154
+ W +SR +AE LL +G F++R S T G Y +S+ KH
Sbjct: 6 LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCIKHYH 65
Query: 155 VYETERGFG--FAEPFNIYPSLGALVLHYAANS 185
+ ET + ++ S+ L+ ++ N
Sbjct: 66 IKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNG 98
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 63.8 bits (155), Expect = 2e-12
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 112 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGFAEP 167
+SRA+AE L +G DG FL+R G Y LS+V H + G
Sbjct: 14 SISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAG 73
Query: 168 FNIYPSLGALVLHYAANS 185
+ L Y+ +
Sbjct: 74 GKAHCGPAELCEFYSRDP 91
Score = 60.3 bits (146), Expect = 3e-11
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 112 RMSRAQAEALL--SGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFGFAEPF 168
++R +AE L + DG FL+RP G YALS++ H L+ + + G
Sbjct: 167 SLTREEAERKLYSGAQTDGKFLLRPRKEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEG 226
Query: 169 NIYPSLGALVLHYAANS 185
+ +L LV + +
Sbjct: 227 TKFDTLWQLVEYLKLKA 243
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 62.6 bits (151), Expect = 2e-12
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 104 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETER 160
+ +W R+SR +A ALL G+ G FL+R S+T G Y LS+ + H ++ +
Sbjct: 10 EERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGP 69
Query: 161 GFGFAEPFNIYPS 173
P
Sbjct: 70 RPPVPPSPAQPPP 82
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase,
phosphotransferase, phosphorylation; NMR {Mus musculus}
SCOP: d.93.1.1 PDB: 1blk_A
Length = 114
Score = 59.7 bits (145), Expect = 3e-12
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 112 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP----KHCLVYETERGFG 163
+SR AE L G+FLIR S + G ++LS+ KH + + G
Sbjct: 18 TISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGY 77
Query: 164 FAEPFNIYPSLGALVLHYAANS 185
+ P +P+L ALV HY+
Sbjct: 78 YISPRITFPTLQALVQHYSKKG 99
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 62.7 bits (153), Expect = 4e-12
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 112 RMSRAQAEALLSGRPDGTFLIRPSTT-GQYALSIVCSGAPKHCLVYETERGFGFAEPFNI 170
+ RA+ LL G FL+R S +Y LS++ G P+H ++ + +
Sbjct: 19 AIPRAEVAELL--VHSGDFLVRESQGKQEYVLSVLWDGLPRHFIIQSLDNLYRLEGEG-- 74
Query: 171 YPSLGALVLHYAANS 185
+PS+ L+ H +
Sbjct: 75 FPSIPLLIDHLLSTQ 89
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.50A {Mus musculus}
Length = 138
Score = 59.9 bits (145), Expect = 5e-12
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 114 SRAQAEALL------SGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFG-- 163
SR AE LL +G DGTFL+R S T Y LS SG +HC + T
Sbjct: 31 SRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMK 90
Query: 164 -FAEPFNIYPSLGALVLHYAANSLEEH 189
+ + S+ AL+ HY L
Sbjct: 91 YYLTDNLTFNSIYALIQHYREAHLRCA 117
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 57.8 bits (139), Expect = 1e-10
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 102 PHHDEKTWLVRMSRAQAEALLS-GRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYET 158
+ ++ RA+AE +LS R DG FLIR S + G ++LS+ +H V
Sbjct: 54 EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD 113
Query: 159 ERGFGFAEPFNIYPSLGALVLHYAANSL 186
G + + SL LV ++ + S+
Sbjct: 114 GAGK-YFLWVVKFNSLNELVDYHRSTSV 140
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 58.1 bits (139), Expect = 2e-10
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 104 HDEKTWLV-RMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETER 160
+ +W R+SR +A ALL G+ G FL+R S+T G Y LS+ + H ++ +
Sbjct: 8 EERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGP 67
Query: 161 GFGFAE 166
Sbjct: 68 RPPVPP 73
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 55.1 bits (133), Expect = 2e-09
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 112 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSI-----VCSGAPKHCLVYETERGF 162
+SR AE L G G+F+IR S T G Y+LS+ KH + + G
Sbjct: 76 GISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGG 135
Query: 163 GFAEPFNIYPSLGALVLHYAANS 185
+ P + + +L LV HY +
Sbjct: 136 FYISPRSTFSTLQELVDHYKKGN 158
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 54.8 bits (132), Expect = 2e-09
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 112 RMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCLVYETERGF 162
+++R ++E LL + P GTFL+R S T G Y LS+ KH + + + G
Sbjct: 71 KITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGG 130
Query: 163 GFAEPFNIYPSLGALVLHYAANS 185
+ + SL LV +Y+ ++
Sbjct: 131 FYITSRTQFNSLQQLVAYYSKHA 153
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 54.5 bits (131), Expect = 4e-09
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 104 HDEKTWLVRMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIVCSGAP-----KHCL 154
E+ + +++R ++E LL + P GTFL+R S T G Y LS+ KH
Sbjct: 146 QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYK 205
Query: 155 VYETERGFGFAEPFNIYPSLGALVLHYAANS 185
+ + + G + + SL LV +Y+ ++
Sbjct: 206 IRKLDSGGFYITSRTQFNSLQQLVAYYSKHA 236
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 50.1 bits (119), Expect = 3e-08
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 90 SLSALNRTERDLPHHDEKTWLVRMSRAQAEALL--SGRPDGTFLIRPSTT--GQYALSIV 145
N + E + +SR AE L G G+FLIR S + G ++LS+
Sbjct: 58 GFIPFNFVAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVR 117
Query: 146 CSGAP-----KHCLVYETERGFGFAEPFNIYPSLGALVLHYAANS 185
KH + + G + P +P L LV HY S
Sbjct: 118 DFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNAS 162
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine
binding domain, protein tyrosine kinase, signal
transduction, structural genomics; NMR {Homo sapiens}
Length = 118
Score = 48.2 bits (114), Expect = 8e-08
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 109 WLVRMSRAQAEALLSGRP-DGTFLIRPSTT--GQYALSIVCSGAP----KHCLVYETERG 161
+++SR +A+ LL P G L+RPS +++ +H V
Sbjct: 24 CFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGPK 83
Query: 162 F--GFAEPFNIYPSLGALVLHYAANS 185
+ +PF+ SL A+V ++ +++
Sbjct: 84 YVIDVEQPFSC-TSLDAVVNYFVSHT 108
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 49.2 bits (116), Expect = 2e-07
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 8/97 (8%)
Query: 89 PSLSALNRTERDLPHHDEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVC 146
S+ L E M R + L + GTF+IR S GQ+ ++ +
Sbjct: 334 KSMQTLRYQRHISTLWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIG 393
Query: 147 ---SGAPKHCLVYETERGFG---FAEPFNIYPSLGAL 177
KH LV + F + + + L
Sbjct: 394 VEMPARIKHYLVQPNDTAAAKKTFPDFLSEHSQFVNL 430
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 47.5 bits (112), Expect = 3e-07
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Query: 104 HDEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPSTT-GQYALSIVCS---GAPKHCLVY 156
+ +++ MSR +A LL GTFL+R S+ G+Y+L++ + A H L+
Sbjct: 9 FEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIE 68
Query: 157 ETERGF------GFAEPFNIYPSLGALVLHYAANSLEEHNDD 192
E G +P + AL+ H+ L E +
Sbjct: 69 RGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLL 110
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES;
1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A
2l3t_A 3gxw_A 3gxx_A
Length = 197
Score = 46.4 bits (110), Expect = 8e-07
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 113 MSRAQAEALLSGRPDGTFLIRPSTTGQYALSI---VCSGAPKHCLVYETER--GFGFAEP 167
+ QAE L + G F+IR S+ G L+I + +H + E E+ +
Sbjct: 14 FNGKQAEDYLRSKERGDFVIRQSSRGDDHLAITWKLDKDLFQHVDIQELEKENPLALGKV 73
Query: 168 FNI----YPSLGALVLHYAAN 184
+ Y L +++ Y N
Sbjct: 74 LVVEGQRYHDLDQIIVEYLQN 94
>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 126
Score = 45.1 bits (106), Expect = 9e-07
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 117 QAEALLSGRPDGTFLIRPSTT--GQYALSIVCS-GAPKHCLVYETERGFGFAEPFNIYPS 173
+A + DG + IR S+T G+ + + ++ ++E + F ++ S
Sbjct: 34 KATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRNYRIFEKDSKFYLEGEV-LFVS 92
Query: 174 LGALVLHYAANSLEEHNDDLI 194
+G++V HY + L H L+
Sbjct: 93 VGSMVEHYHTHVLPSHQSLLL 113
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 46.7 bits (110), Expect = 1e-06
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 13/100 (13%)
Query: 104 HDEKTWLV-RMSRAQAEALLS--GRPDGTFLIRPSTT-GQYALSIVCSGAP---KHCLVY 156
+ +++ MSR +A LL GTFL+R S+ G+Y+L++ + H L+
Sbjct: 38 FEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIE 97
Query: 157 ETERGFGFAEP--FNI----YPSLGALVLHYAANSLEEHN 190
E I +P + AL+ H+ L E +
Sbjct: 98 RGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEAS 137
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 46.4 bits (110), Expect = 2e-06
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 112 RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--AE 166
+S AE LL GR G+FL RPS G ++LS+ H + + + E
Sbjct: 8 DLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLYGGE 67
Query: 167 PFNIYPSLGALVLHYAAN--SLEEHNDDLIFL 196
F +L LV +Y L++ + +I L
Sbjct: 68 KF---ATLTELVEYYTQQQGVLQDRDGTIIHL 96
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 45.6 bits (108), Expect = 3e-06
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 112 RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--AE 166
++ +AE LL R DG+FL RPS + G LS+ +GA H + T + E
Sbjct: 10 NITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDLYGGE 69
Query: 167 PFNIYPSLGALVLHY--AANSLEEHNDDLIFL 196
F +L LV +Y L+E N D+I L
Sbjct: 70 KF---ATLAELVQYYMEHHGQLKEKNGDVIEL 98
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 45.3 bits (107), Expect = 4e-06
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 112 RMSRAQAEALLSGR-PDGTFLIRPSTT--GQYALSIVCSGAPKHCLVYETERGFGF--AE 166
+S AE LL GR G+FL RPS G ++LS+ H + + + E
Sbjct: 8 DLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDLYGGE 67
Query: 167 PFNIYPSLGALVLHYAAN--SLEEHNDDLIFL 196
F +L LV +Y L++ + +I L
Sbjct: 68 KF---ATLTELVEYYTQQQGVLQDRDGTIIHL 96
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A
{Antonospora locustae}
Length = 178
Score = 40.6 bits (95), Expect = 8e-05
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Query: 113 MSRAQAEALLSGRPDGTFLIRPSTTGQY-ALSI-VCSGAPKHCLVYETERGFGFAEPFNI 170
+ ++E L FLIR + Y L I S H + E + +
Sbjct: 20 FNVTESENYLRSST-DDFLIRKGSRHGYCVLVIKFASDVFVHMKIEEHSEHYTCSN--KH 76
Query: 171 YPSLGALVLHYAANSLEEHNDDLI 194
+ + ++ Y + + +
Sbjct: 77 FEDIDEVISVYVRP-ILRNLKSIK 99
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 38.0 bits (88), Expect = 0.001
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 87 PMPSLSALNRTERDLPHHDEKTWLVRMSRAQAEALLSGRPDGTFLIR--PSTTGQYALSI 144
P P + P + + + +SR A+ LL +G++LIR G Y L++
Sbjct: 32 PHPRRITCTCEVENRPKYYGREFHGMISREAADQLLI-VAEGSYLIRESQRQPGTYTLAL 90
Query: 145 VCSGAPKH 152
++
Sbjct: 91 RFGSQTRN 98
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 38.3 bits (89), Expect = 0.001
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 113 MSRAQAEALLSGRPDGTFLIRPSTTGQYALSI---VCSGAPKHCLVYETERGFGFA 165
+ QAE L + G F+IR S+ G L I + +H + E E+ A
Sbjct: 1030 FNGRQAEDYLRSKERGEFVIRQSSRGDDHLVITWKLDKDLFQHIDIQELEKENPLA 1085
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 37.5 bits (86), Expect = 0.002
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 113 MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVYETERGFGFAEPFN 169
+S+ + ALL + GTFL+R S + G + V E F EP+
Sbjct: 447 ISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQ------NGGEPDFHAVEPYT 500
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 37.5 bits (86), Expect = 0.002
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 113 MSRAQAEALLSGRPDGTFLIRPSTT---GQYALSIVCSGAPKHCLVY 156
+S+ + A+LS +P GTFL+R S + G + V +
Sbjct: 463 ISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQ 509
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 37.2 bits (85), Expect = 0.002
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 113 MSRAQAEALLSGRPDGTFLIRPSTTGQY-ALSIVCSGAPKHCLVYETERGFGFAEPF 168
+S+ + ALL + GTFL+R S + + A++ ++ E F EP+
Sbjct: 582 ISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQN----GGEPDFHAVEPY 634
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 36.7 bits (84), Expect = 0.003
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 113 MSRAQAEALLSGRPDGTFLIRPSTT--GQYALSIVCSGAPKH 152
+++ QA LL +PDGTFL+R S + G ++ ++
Sbjct: 471 VNKQQAHDLLINKPDGTFLLRFSDSEIGGITIAWKFDSPDRN 512
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.024
Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 26/99 (26%)
Query: 82 DTSCPPMPSLSALNRTERD----LPHH---DEKTWLVRMSRAQAEALLSGRPDGTFLIRP 134
S + +R D ++ + +R +ALL RP LI
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR------QALLELRPAKNVLID- 156
Query: 135 STTGQYALSIVCSGAPKHCLVYETERGFGFAE--PFNIY 171
G G+ K + + + F I+
Sbjct: 157 ---GV-------LGSGKTWVALDVCLSYKVQCKMDFKIF 185
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.036
Identities = 18/109 (16%), Positives = 31/109 (28%), Gaps = 40/109 (36%)
Query: 101 LPHHDEKTWLVRMSRAQA--EAL-LSGRPDGTF----LIRPSTTGQ---YALSIVCSGAP 150
L ++ T + + A ++ RP L R G A+
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-------- 159
Query: 151 KHCLVYETERGFG--------FAE---PFNIYPSLGALVLHYAANSLEE 188
FG F E + Y L ++ ++A +L E
Sbjct: 160 -----------FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Score = 26.9 bits (59), Expect = 5.7
Identities = 21/107 (19%), Positives = 29/107 (27%), Gaps = 44/107 (41%)
Query: 12 NTPSS---SGPPMS-----EADHKSAAAGG----------R------------------- 34
N + SGPP S K+ A G R
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL 431
Query: 35 LGPGYSIADPGVASRGLSLAEQDFLTMNCALAV--TGGGSDSASTSG 79
L P + + + +S +D + V T GSD SG
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKD-----IQIPVYDTFDGSDLRVLSG 473
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein,
cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Length = 314
Score = 28.8 bits (64), Expect = 1.2
Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 13/78 (16%)
Query: 88 MPSLSALNRTERDLPHHDEKTWLVRMSRAQAEALLSGRPDGTFLIRPSTTGQYALSIVCS 147
M A + L KT+ VR+ + + F G+ +VC
Sbjct: 2 MAGAIASRMSFSSLKRKQPKTFTVRIV------TMDA--EMEFNCEMKWKGKDLFDLVC- 52
Query: 148 GAPKHCLVYETERGFGFA 165
+ + ET FG
Sbjct: 53 ---RTLGLRETW-FFGLQ 66
>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled
dodecamer, hyperthermophilic; 2.24A {Pyrococcus
horikoshii} PDB: 2cf4_A
Length = 332
Score = 28.4 bits (64), Expect = 1.4
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 34 RLGPGYSIADPGVASRGLSLAEQDFLTMNCALAVTGGGSDSASTSGG 80
R +I +A + S+AE+ + + VTGGG+D+++
Sbjct: 249 RAVDNSAIYSRDLARKVWSIAEK--NGIEIQIGVTGGGTDASAFQDR 293
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 27.7 bits (61), Expect = 2.4
Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 1/113 (0%)
Query: 1 MDPSYHSTSSGNTPSSSGPPMSEADHKSAAAGGRLGPGYSIADPGVASRGLSLAEQDFLT 60
+D + + P K A + G G D + + G
Sbjct: 33 LDAARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMPSRDRNIGAPGQDTPGVSLHP 92
Query: 61 MNCALAVTGGGSDSASTSGGPDTSCPP-MPSLSALNRTERDLPHHDEKTWLVR 112
++ G+D+ G P + SL+ T+ +
Sbjct: 93 LSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETESPEPGDEG 145
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 27.4 bits (60), Expect = 4.0
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 1 MDPSYHSTSSGNTPSSSGP-PMSEADHKSAAAGGRLGPGYSIADPG 45
PSY TS +P+S P S + ++ P YS PG
Sbjct: 1664 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPG 1709
Score = 27.4 bits (60), Expect = 4.3
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 3 PSYHSTSSGNTPSSSG-PPMSEADHKSAAAGGRLGPGYSIADPG 45
P + +S G +P+S P S A ++ + P YS P
Sbjct: 1533 PGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1576
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 27.0 bits (59), Expect = 6.2
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 3 PSYHSTSSGNTPSSSGPPMSEADHKSAAAGGRLGPGYSIADPG 45
P Y TS +PSS G S A S+ + P YS P
Sbjct: 1549 PGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPS 1591
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 26.4 bits (59), Expect = 7.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 176 ALVLHYAANSLEEHNDDLIFL 196
A VLHY N + N DL+ L
Sbjct: 235 ATVLHYEDNDAQIQNGDLVLL 255
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer
membrane; HET: UNL; 2.30A {Escherichia coli}
Length = 446
Score = 26.1 bits (58), Expect = 8.0
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 3/43 (6%)
Query: 111 VRMSRAQAE---ALLSGRPDGTFLIRPSTTGQYALSIVCSGAP 150
+ AQA LL G + + + +G
Sbjct: 214 RQGELAQANNALQLLLGSYGKLPQAQTVNSDSLQSVKLPAGLS 256
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.393
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,984,971
Number of extensions: 171547
Number of successful extensions: 558
Number of sequences better than 10.0: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 109
Length of query: 196
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 107
Effective length of database: 4,216,824
Effective search space: 451200168
Effective search space used: 451200168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.4 bits)