BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13389
(617 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 92/169 (54%)
Query: 121 KVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQ 180
K + C +C F H + H G K + C C K+F+DK RH R H G KP++
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 181 CSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMC 240
C C +SF+QR+NL H R H G +P+ C C F+ + L H R H G KP+ C C
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Query: 241 AKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLK 289
K FSR+D+L+ H + H G K Y C C K F+R+D LN H R H G K
Sbjct: 140 GKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 97/174 (55%)
Query: 144 IHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
+ G K + C C K+F+ H R H G KP++C C +SF+ + +L H R H G
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 204 IRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRY 263
+P++C C F+ +++L H R H G KP+ C C K FS+ L H + H G K Y
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPY 134
Query: 264 LCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSK 317
C C K F+R+D+L+ H R H G KP+ C C +SF+++ LN+H R HT K
Sbjct: 135 KCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 96/169 (56%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
G KP+ C C +SF++ +L H R H G +P++C C F++K DL RH R H G KP
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 235 FLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
+ C C K FS++ +L H + H G K Y C C K F++ L H R H G KP+ C
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 295 VCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHG 343
C +SF+++ L+ H R HT KP+ C C +SFS++ L +H + G
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 145 bits (365), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 95/175 (54%), Gaps = 1/175 (0%)
Query: 200 IHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEG 259
+ G +P+ C C F+ L H R H G KP+ C C K FS K DL RH + H G
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 260 SKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPH 319
K Y C C K F+++ +L H R H G KP+ C C +SF+Q A L H R HT KP+
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPY 134
Query: 320 ACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVK 374
C C +SFS++ NL+ H + G P+KC C ++F + L++H RT G K
Sbjct: 135 KCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC-GKSFSRRDALNVHQRTHTGKK 188
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 93/167 (55%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
+ C +C K+F HL H ++H+ K ++C +C F K++ RH + H G K + C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 155 VCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYI 214
C K+F+ + H R H G KP+ C C +SF+Q ++L H R H G +P++C C
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 215 CFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
F+ + +L+ H R H G KP+ C C K FSR+D LN H + H G K
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 89/171 (52%), Gaps = 1/171 (0%)
Query: 256 IHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTN 315
+ G K Y C C K F+R D L H R H G KP+ C C +SF+ K L H R HT
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 316 SKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKP 375
KP+ C C +SFSQ++NL H + G P+ C C ++F + L H RT G KP
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPEC-GKSFSQLAHLRAHQRTHTGEKP 133
Query: 376 FKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH 426
+KC C + F ++ L H R P+KC C K F+++ L H +TH
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 88/179 (49%), Gaps = 10/179 (5%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K + C C K ++R + L H RTH + C +C K+F DK L RH
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTG----------EKPYKCPECGKSFSDKKDLTRHQ 69
Query: 115 KSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHE 174
++H+ K ++C +C F + H + H G K + C C K+F+ H R H
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIK 233
G KP++C C +SF++ NL+ H R H G +P++C C F+ + LN H R H G K
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 86/164 (52%), Gaps = 4/164 (2%)
Query: 287 GLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
G KP+ C C +SF++ L H R HT KP+ C C +SFS K +L H + G P
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 347 FKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+KC C ++F + L H RT G KP+ C C + F + + L+ H R P+KC
Sbjct: 78 YKCPEC-GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKC 136
Query: 407 DICFKLFTKKSNLRTHIKTH---EPIPCDKCPEIFEKKTDLQEH 447
C K F+++ NL TH +TH +P C +C + F ++ L H
Sbjct: 137 PECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 332 SNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVL 391
S+ L+ G P+ C C ++F + L+ H RT G KP+KC C + F K L
Sbjct: 7 SSSVAQAALEPGEKPYACPEC-GKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDL 65
Query: 392 KEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH---EPIPCDKCPEIFEKKTDLQEH 447
H R P+KC C K F++++NLR H +TH +P C +C + F + L+ H
Sbjct: 66 TRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 52/85 (61%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFL 236
KP++C C +SF+Q SNL H R H G +P++C C F+ SDL +H R H G KP+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 237 CSMCAKCFSRKDDLNRHMKIHEGSK 261
C C K FSR D L+RH + H+ K
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 48/85 (56%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYL 264
+P++C C F+ S+L +H R H G KP+ C C K FS+ DL +H + H G K Y
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 265 CTMCPKCFTRKDDLNRHMRNHDGLK 289
C C K F+R D L+RH R H K
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFH 292
KP+ C C K FS+ +L +H + H G K Y C C K F++ DL +H R H G KP+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 293 CSVCFESFTQKALLNIHLRIHTNSK 317
C C +SF++ L+ H R H N K
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQ 208
K + C C K+F+ +H R H G KP++C C +SF+Q S+L H R H G +P++
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 209 CNVCYICFTNKSDLNRHSRIHNGIK 233
C C F+ L+RH R H K
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFK 348
KP+ C C +SF+Q + L H R HT KP+ C C +SFSQ S+L H + G P+K
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 349 CDVCPNETFEKETQLSLHMRT 369
C C ++F + LS H RT
Sbjct: 63 CPEC-GKSFSRSDHLSRHQRT 82
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
K Y C C K F++ +L +H R H G KP+ C C +SF+Q + L H R HT KP+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 321 CSICTESFSQKSNLYIHLKL 340
C C +SFS+ +L H +
Sbjct: 63 CPECGKSFSRSDHLSRHQRT 82
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPF 376
KP+ C C +SFSQ SNL H + G P+KC C ++F + + L H RT G KP+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPEC-GKSFSQSSDLQKHQRTHTGEKPY 61
Query: 377 KCSMCDEGFPKKSVLKEHLRVSHN 400
KC C + F + L H R N
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQN 85
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 121 KVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQ 180
K ++C +C F +H + H G K + C C K+F+ +H R H G KP++
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 181 CSVCSESFTQRSNLNIHLRIHD 202
C C +SF++ +L+ H R H
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQ 84
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 346 PFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFK 405
P+KC C ++F + + L H RT G KP+KC C + F + S L++H R P+K
Sbjct: 4 PYKCPEC-GKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 406 CDICFKLFTKKSNLRTHIKTHE 427
C C K F++ +L H +TH+
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQ 84
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
+ C +C K+F +L +H ++H+ K ++C +C F + +H + H G K + C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 155 VCSKTFTDKVKFNRHMRAHEGIK 177
C K+F+ +RH R H+ K
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQNKK 87
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 374 KPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH---EPIP 430
KP+KC C + F + S L++H R P+KC C K F++ S+L+ H +TH +P
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 431 CDKCPEIFEKKTDLQEH 447
C +C + F + L H
Sbjct: 63 CPECGKSFSRSDHLSRH 79
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 53 MVKKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNR 112
M K +KC C K +++ + L H RTH + C +C K+F L +
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTG----------EKPYKCPECGKSFSQSSDLQK 50
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVK 149
H ++H+ K ++C +C F +RH + H K
Sbjct: 51 HQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNV--CYICFTNKSDLNRHSRIHNGI 232
+PF C+ C++ + + S+L +H R H G +P+QC+ C F+ L RH R H G+
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNRHMRNH 285
KPF C C + FSR D L H + H G K + C C K F R D+L RH H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNRHMRNHDGL 288
+PF+C+ C K + + L H + H G K Y C C + F+R D L RH R H G+
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSI--CTESFSQKSNLYIH 337
KPF C C F++ L H R HT KP +C C + F++ L H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 118 SENKVFRCE--QCRFDFYVKREYNRHMKIHDGVKVFLCSV--CSKTFTDKVKFNRHMRAH 173
SE + F C C ++ H + H G K + C C + F+ + RH R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 174 EGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNV--CYICFTNKSDLNRHSRIH 229
G+KPFQC C F++ +L H R H G +PF C C F +L RH +H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 314 TNSKPHACSI--CTESFSQKSNLYIHLKLQHGVNPFKCDVCPNET-FEKETQLSLHMRTV 370
+ +P C+ C + + + S+L +H + G P++CD E F + QL H R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 371 HGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDI--CFKLFTKKSNLRTHIKTH 426
GVKPF+C C F + LK H R PF C C K F + L H H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 268 CPKCFTRKDDLNRHMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICT 325
C K + + L H R H G KP+ C C F++ L H R HT KP C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 326 ESFSQKSNLYIHLKLQHGVNPFKC 349
FS+ +L H + G PF C
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 43/116 (37%), Gaps = 14/116 (12%)
Query: 62 CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCS--QCPKTFVDKWHLNRHLKSHSE 119
C KRY + + L H R H + C C + F L RH + H+
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKP----------YQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 120 NKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSV--CSKTFTDKVKFNRHMRAH 173
K F+C+ C+ F H + H G K F C C K F + RH H
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 54 VKKFKCNICPKRYARKNRLTNHLRTHEA 81
VK F+C C ++++R + L H RTH
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHTRTHTG 91
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C V C F+Q++NL+ H+RIH G +PFQC +C F+ ++ LN H R H G KP
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
F C +C + F+ RH KIH
Sbjct: 63 FACDICGRKFATLHTRTRHTKIH 85
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ + C V C + F+ K + H+R H G KPFQC +C +F+Q+++LN H+R H G +P
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 207 FQCNVCYICFTNKSDLNRHSRIH 229
F C++C F RH++IH
Sbjct: 63 FACDICGRKFATLHTRTRHTKIH 85
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
Y C + C + F++K +L+ H+R H G KPF C +C +F+Q+A LN H+R HT KP A
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 321 CSICTESFSQKSNLYIHLKL 340
C IC F+ H K+
Sbjct: 65 CDICGRKFATLHTRTRHTKI 84
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C V C F+QK L+ H+RIHT KP C IC +FSQ+++L H++ G P
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 347 FKCDVCPNETFEKETQLSLHMRTVH 371
F CD+C + +LH RT H
Sbjct: 63 FACDICGRKF------ATLHTRTRH 81
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+P+ C + C + FS+K +L+ H++IH G K + C +C + F+++ LN H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSK 317
F C +C F H +IH K
Sbjct: 63 FACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
RP+ C V C F+ K++L+ H RIH G KPF C +C + FS++ LN H++ H G K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
+ C +C + F RH + H
Sbjct: 63 FACDICGRKFATLHTRTRHTKIH 85
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 126 EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCS 185
E C F K + H++IH G K F C +C + F+ + N H+R H G KPF C +C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICG 69
Query: 186 ESF----TQRSNLNIHLRIHD 202
F T+ + IHLR D
Sbjct: 70 RKFATLHTRTRHTKIHLRQKD 90
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 351 VCPNET----FEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
CP E+ F ++T L H+R G KPF+C +C F +++ L H+R PF C
Sbjct: 6 ACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFAC 65
Query: 407 DICFKLFTKKSNLRTHIKTH 426
DIC + F H K H
Sbjct: 66 DICGRKFATLHTRTRHTKIH 85
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKT 159
C + F K +L+ H++ H+ K F+C C +F + N H++ H G K F C +C +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 160 FTDKVKFNRHMRAH 173
F RH + H
Sbjct: 72 FATLHTRTRHTKIH 85
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 53 MVKKFKCNI--CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHL 110
M + + C + C +R+++K L H+R H F C C + F + L
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKP----------FQCRICMRNFSQQASL 50
Query: 111 NRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
N H+++H+ K F C+ C F RH KIH
Sbjct: 51 NAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K F+C IC + ++++ L H+RTH F C C + F RH
Sbjct: 33 KPFQCRICMRNFSQQASLNAHIRTHTGEKP----------FACDICGRKFATLHTRTRHT 82
Query: 115 KSHSENK 121
K H K
Sbjct: 83 KIHLRQK 89
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C V C F+Q++NL+ H+RIH G +PFQC +C F+ + LN+H R H G KP
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
F C +C + F+ +RH KIH
Sbjct: 63 FACDICGRKFATLHTRDRHTKIH 85
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ + C V C + F+ K + H+R H G KPFQC +C +F+Q + LN H+R H G +P
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 207 FQCNVCYICFTNKSDLNRHSRIH 229
F C++C F +RH++IH
Sbjct: 63 FACDICGRKFATLHTRDRHTKIH 85
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
Y C + C + F++K +L+ H+R H G KPF C +C +F+Q LN H+R HT KP A
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 321 CSICTESFSQKSNLYIHLKL 340
C IC F+ H K+
Sbjct: 65 CDICGRKFATLHTRDRHTKI 84
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+P+ C + C + FS+K +L+ H++IH G K + C +C + F++ LN+H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSK 317
F C +C F + H +IH K
Sbjct: 63 FACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C V C F+QK L+ H+RIHT KP C IC +FSQ + L H++ G P
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 347 FKCDVC 352
F CD+C
Sbjct: 63 FACDIC 68
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
RP+ C V C F+ K++L+ H RIH G KPF C +C + FS+ LN+H++ H G K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
+ C +C + F +RH + H
Sbjct: 63 FACDICGRKFATLHTRDRHTKIH 85
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%)
Query: 126 EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCS 185
E C F K + H++IH G K F C +C + F+ N+H+R H G KPF C +C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICG 69
Query: 186 ESFTQRSNLNIHLRIH 201
F + H +IH
Sbjct: 70 RKFATLHTRDRHTKIH 85
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 351 VCPNET----FEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
CP E+ F ++T L H+R G KPF+C +C F + + L +H+R PF C
Sbjct: 6 ACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFAC 65
Query: 407 DICFKLFTKKSNLRTHIKTH 426
DIC + F H K H
Sbjct: 66 DICGRKFATLHTRDRHTKIH 85
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKT 159
C + F K +L+ H++ H+ K F+C C +F N+H++ H G K F C +C +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 160 FTDKVKFNRHMRAH 173
F +RH + H
Sbjct: 72 FATLHTRDRHTKIH 85
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 53 MVKKFKCNI--CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHL 110
M + + C + C +R+++K L H+R H F C C + F L
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKP----------FQCRICMRNFSQHTGL 50
Query: 111 NRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
N+H+++H+ K F C+ C F +RH KIH
Sbjct: 51 NQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K F+C IC + +++ L H+RTH F C C + F +RH
Sbjct: 33 KPFQCRICMRNFSQHTGLNQHIRTHTGEKP----------FACDICGRKFATLHTRDRHT 82
Query: 115 KSHSENK 121
K H K
Sbjct: 83 KIHLRQK 89
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C V C F+ SNL H+RIH G +PFQC +C F+ L H R H G KP
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
F C +C + F+R D+ RH KIH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
RP+ C V C F++ S+L RH RIH G KPF C +C + FSR D L H++ H G K
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
+ C +C + F R D+ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ + C V C + F+D RH+R H G KPFQC +C +F++ +L H+R H G +P
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 207 FQCNVCYICFTNKSDLNRHSRIH 229
F C++C F + RH++IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+P+ C + C + FS +L RH++IH G K + C +C + F+R D L H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSK 317
F C +C F + H +IH K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
Y C + C + F+ +L RH+R H G KPF C +C +F++ L H+R HT KP A
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 321 CSICTESFSQKSNLYIHLKL 340
C IC F++ H K+
Sbjct: 65 CDICGRKFARSDERKRHTKI 84
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C V C F+ + L H+RIHT KP C IC +FS+ +L H++ G P
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 347 FKCDVCPNE---TFEKETQLSLHMR 368
F CD+C + + E++ +H+R
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLR 87
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%)
Query: 126 EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCS 185
E C F RH++IH G K F C +C + F+ H+R H G KPF C +C
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 186 ESFTQRSNLNIHLRIH 201
F + H +IH
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 351 VCPNET----FEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
CP E+ F + L+ H+R G KPF+C +C F + L H+R PF C
Sbjct: 6 ACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 407 DICFKLFTKKSNLRTHIKTH 426
DIC + F + + H K H
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKT 159
C + F D +L RH++ H+ K F+C C +F H++ H G K F C +C +
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 160 FTDKVKFNRHMRAH 173
F + RH + H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 53 MVKKFKCNI--CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHL 110
M + + C + C +R++ + LT H+R H F C C + F HL
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKP----------FQCRICMRNFSRSDHL 50
Query: 111 NRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
H+++H+ K F C+ C F E RH KIH
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K F+C IC + ++R + LT H+RTH F C C + F RH
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP----------FACDICGRKFARSDERKRHT 82
Query: 115 KSHSENK 121
K H K
Sbjct: 83 KIHLRQK 89
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C V C F+Q +L H+RIH G +PFQC +C F+ L H R H G KP
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
F C +C + F+R D+ RH KIH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
RP+ C V C F+ L RH RIH G KPF C +C + FSR D L H++ H G K
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
+ C +C + F R D+ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ + C V C + F+ RH+R H G KPFQC +C +F++ +L H+R H G +P
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 207 FQCNVCYICFTNKSDLNRHSRIH 229
F C++C F + RH++IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+P+ C + C + FS+ L RH++IH G K + C +C + F+R D L H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSK 317
F C +C F + H +IH K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
Y C + C + F++ L RH+R H G KPF C +C +F++ L H+R HT KP A
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 321 CSICTESFSQKSNLYIHLKL 340
C IC F++ H K+
Sbjct: 65 CDICGRKFARSDERKRHTKI 84
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C V C F+Q L H+RIHT KP C IC +FS+ +L H++ G P
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 347 FKCDVCPNE---TFEKETQLSLHMR 368
F CD+C + + E++ +H+R
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLR 87
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%)
Query: 126 EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCS 185
E C F RH++IH G K F C +C + F+ H+R H G KPF C +C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 186 ESFTQRSNLNIHLRIH 201
F + H +IH
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 351 VCPNET----FEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
CP E+ F + L+ H+R G KPF+C +C F + L H+R PF C
Sbjct: 6 ACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 407 DICFKLFTKKSNLRTHIKTH 426
DIC + F + + H K H
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKT 159
C + F L RH++ H+ K F+C C +F H++ H G K F C +C +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 160 FTDKVKFNRHMRAH 173
F + RH + H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 53 MVKKFKCNI--CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHL 110
M + + C + C +R+++ LT H+R H F C C + F HL
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKP----------FQCRICMRNFSRSDHL 50
Query: 111 NRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
H+++H+ K F C+ C F E RH KIH
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K F+C IC + ++R + LT H+RTH F C C + F RH
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP----------FACDICGRKFARSDERKRHT 82
Query: 115 KSHSENK 121
K H K
Sbjct: 83 KIHLRQK 89
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C V C F++ ++L H+RIH G +PFQC +C F+ L H R H G KP
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
F C +C + F+R D+ RH KIH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
RP+ C V C F+ +DL RH RIH G KPF C +C + FSR D L H++ H G K
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
+ C +C + F R D+ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+P+ C + C + FSR DL RH++IH G K + C +C + F+R D L H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSK 317
F C +C F + H +IH K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ + C V C + F+ RH+R H G KPFQC +C +F++ +L H+R H G +P
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 207 FQCNVCYICFTNKSDLNRHSRIH 229
F C++C F + RH++IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
Y C + C + F+R DL RH+R H G KPF C +C +F++ L H+R HT KP A
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 321 CSICTESFSQKSNLYIHLKL 340
C IC F++ H K+
Sbjct: 65 CDICGRKFARSDERKRHTKI 84
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C V C F++ A L H+RIHT KP C IC +FS+ +L H++ G P
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 347 FKCDVCPNE---TFEKETQLSLHMR 368
F CD+C + + E++ +H+R
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLR 87
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%)
Query: 126 EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCS 185
E C F + RH++IH G K F C +C + F+ H+R H G KPF C +C
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 186 ESFTQRSNLNIHLRIH 201
F + H +IH
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 351 VCPNET----FEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
CP E+ F + L+ H+R G KPF+C +C F + L H+R PF C
Sbjct: 6 ACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 407 DICFKLFTKKSNLRTHIKTH 426
DIC + F + + H K H
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 53 MVKKFKCNI--CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHL 110
M + + C + C +R++R LT H+R H F C C + F HL
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKP----------FQCRICMRNFSRSDHL 50
Query: 111 NRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
H+++H+ K F C+ C F E RH KIH
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKT 159
C + F L RH++ H+ K F+C C +F H++ H G K F C +C +
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 160 FTDKVKFNRHMRAH 173
F + RH + H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K F+C IC + ++R + LT H+RTH F C C + F RH
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP----------FACDICGRKFARSDERKRHT 82
Query: 115 KSHSENK 121
K H K
Sbjct: 83 KIHLRQK 89
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C V C F++ + L H+RIH G +PFQC +C F+ L H R H G KP
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
F C +C + F+R D+ RH KIH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
RP+ C V C F+ ++L RH RIH G KPF C +C + FSR D L H++ H G K
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
+ C +C + F R D+ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ + C V C + F+ + RH+R H G KPFQC +C +F++ +L H+R H G +P
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 207 FQCNVCYICFTNKSDLNRHSRIH 229
F C++C F + RH++IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+P+ C + C + FSR +L RH++IH G K + C +C + F+R D L H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSK 317
F C +C F + H +IH K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
Y C + C + F+R +L RH+R H G KPF C +C +F++ L H+R HT KP A
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 321 CSICTESFSQKSNLYIHLKL 340
C IC F++ H K+
Sbjct: 65 CDICGRKFARSDERKRHTKI 84
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C V C F++ A L H+RIHT KP C IC +FS+ +L H++ G P
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 347 FKCDVCPNE---TFEKETQLSLHMR 368
F CD+C + + E++ +H+R
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLR 87
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%)
Query: 126 EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCS 185
E C F E RH++IH G K F C +C + F+ H+R H G KPF C +C
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 186 ESFTQRSNLNIHLRIH 201
F + H +IH
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 351 VCPNET----FEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
CP E+ F + +L+ H+R G KPF+C +C F + L H+R PF C
Sbjct: 6 ACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 407 DICFKLFTKKSNLRTHIKTH 426
DIC + F + + H K H
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 53 MVKKFKCNI--CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHL 110
M + + C + C +R++R LT H+R H F C C + F HL
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKP----------FQCRICMRNFSRSDHL 50
Query: 111 NRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
H+++H+ K F C+ C F E RH KIH
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKT 159
C + F L RH++ H+ K F+C C +F H++ H G K F C +C +
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 160 FTDKVKFNRHMRAH 173
F + RH + H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K F+C IC + ++R + LT H+RTH F C C + F RH
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP----------FACDICGRKFARSDERKRHT 82
Query: 115 KSHSENK 121
K H K
Sbjct: 83 KIHLRQK 89
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 44/79 (55%)
Query: 153 CSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVC 212
C VC K F+ K K HMR H G+KP++C C + S+LN HLRIH RPF+C +C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 213 YICFTNKSDLNRHSRIHNG 231
N S L H R H G
Sbjct: 71 PYASRNSSQLTVHLRSHTG 89
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%)
Query: 265 CTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSIC 324
C +C KCF+RKD L HMR H G+KP+ C C + + LN HLRIH++ +P C IC
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 325 TESFSQKSNLYIHLKLQHG 343
+ S L +HL+ G
Sbjct: 71 PYASRNSSQLTVHLRSHTG 89
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 43/82 (52%)
Query: 234 PFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHC 293
P C +C KCFSRKD L HM+ H G K Y C C LN+H+R H +PF C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 294 SVCFESFTQKALLNIHLRIHTN 315
+C + + L +HLR HT
Sbjct: 68 QICPYASRNSSQLTVHLRSHTG 89
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 178 PFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLC 237
P +C VC + F+++ L H+R H G++P++C C + S LN+H RIH+ +PF C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 238 SMCAKCFSRKDDLNRHMKIHEG 259
+C L H++ H G
Sbjct: 68 QICPYASRNSSQLTVHLRSHTG 89
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 345 NPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPF 404
P KC+VC + F ++ +L HMR GVKP+KC CD S L +HLR+ + PF
Sbjct: 7 GPHKCEVC-GKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 405 KCDICFKLFTKKSNLRTHIKTH 426
KC IC S L H+++H
Sbjct: 66 KCQICPYASRNSSQLTVHLRSH 87
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 206 PFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLC 265
P +C VC CF+ K L H R H G+KP+ C C + LN+H++IH + + C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 266 TMCPKCFTRKDDLNRHMRNHDG 287
+CP L H+R+H G
Sbjct: 68 QICPYASRNSSQLTVHLRSHTG 89
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%)
Query: 124 RCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSV 183
+CE C F K + HM+ H GVK + C C D N+H+R H +PF+C +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 184 CSESFTQRSNLNIHLRIHDG 203
C + S L +HLR H G
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 290 PFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
P C VC + F++K L H+R HT KP+ C C + + S+L HL++ PFKC
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 350 DVCPNETFEKETQLSLHMRTVHG 372
+CP + +QL++H+R+ G
Sbjct: 68 QICPYAS-RNSSQLTVHLRSHTG 89
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 315 NSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVK 374
+S PH C +C + FS+K L H++ GV P+KC C + + L+ H+R +
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTC-DYAAADSSSLNKHLRIHSDER 63
Query: 375 PFKCSMCDEGFPKKSVLKEHLR 396
PFKC +C S L HLR
Sbjct: 64 PFKCQICPYASRNSSQLTVHLR 85
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 58 KCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHLKSH 117
KC +C K ++RK++L H+R H + C C D LN+HL+ H
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKP----------YKCKTCDYAAADSSSLNKHLRIH 59
Query: 118 SENKVFRCEQCRFDFYVKREYNRHMKIHDG 147
S+ + F+C+ C + + H++ H G
Sbjct: 60 SDERPFKCQICPYASRNSSQLTVHLRSHTG 89
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%)
Query: 97 CSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVC 156
C C K F K L H++ H+ K ++C+ C + N+H++IH + F C +C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 157 SKTFTDKVKFNRHMRAHEG 175
+ + H+R+H G
Sbjct: 71 PYASRNSSQLTVHLRSHTG 89
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 375 PFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTHE---PIPC 431
P KC +C + F +K LK H+R V P+KC C S+L H++ H P C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 432 DKCPEIFEKKTDLQEHV 448
CP + L H+
Sbjct: 68 QICPYASRNSSQLTVHL 84
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 398 SHNVNPFKCDICFKLFTKKSNLRTHIKTH---EPIPCDKCPEIFEKKTDLQEHV 448
S + P KC++C K F++K L+TH++ H +P C C + L +H+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL 56
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 54 VKKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRH 113
VK +KC C A + L HLR H F C CP + L H
Sbjct: 34 VKPYKCKTCDYAAADSSSLNKHLRIHS----------DERPFKCQICPYASRNSSQLTVH 83
Query: 114 LKSHSEN 120
L+SH+ +
Sbjct: 84 LRSHTGD 90
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C V C F++ L H+RIH G +PFQC +C F+ L H R H G KP
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
F C +C + F+R D+ RH KIH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+P+ C + C + FSR D+L RH++IH G K + C +C + F+R D L H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSK 317
F C +C F + H +IH K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
RP+ C V C F+ +L RH RIH G KPF C +C + FSR D L H++ H G K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
+ C +C + F R D+ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
Y C + C + F+R D+L RH+R H G KPF C +C +F++ L H+R HT KP A
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 321 CSICTESFSQKSNLYIHLKL 340
C IC F++ H K+
Sbjct: 65 CDICGRKFARSDERKRHTKI 84
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ + C V C + F+ + RH+R H G KPFQC +C +F++ +L H+R H G +P
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 207 FQCNVCYICFTNKSDLNRHSRIH 229
F C++C F + RH++IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C V C F++ L H+RIHT KP C IC +FS+ +L H++ G P
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 347 FKCDVCPNE---TFEKETQLSLHMR 368
F CD+C + + E++ +H+R
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLR 87
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%)
Query: 126 EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCS 185
E C F E RH++IH G K F C +C + F+ H+R H G KPF C +C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 186 ESFTQRSNLNIHLRIH 201
F + H +IH
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 351 VCPNET----FEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
CP E+ F + +L+ H+R G KPF+C +C F + L H+R PF C
Sbjct: 6 ACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 407 DICFKLFTKKSNLRTHIKTH 426
DIC + F + + H K H
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 53 MVKKFKCNI--CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHL 110
M + + C + C +R++R + LT H+R H F C C + F HL
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKP----------FQCRICMRNFSRSDHL 50
Query: 111 NRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
H+++H+ K F C+ C F E RH KIH
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKT 159
C + F L RH++ H+ K F+C C +F H++ H G K F C +C +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 160 FTDKVKFNRHMRAH 173
F + RH + H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K F+C IC + ++R + LT H+RTH F C C + F RH
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP----------FACDICGRKFARSDERKRHT 82
Query: 115 KSHSENK 121
K H K
Sbjct: 83 KIHLRQK 89
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C V C F++ L H+RIH G +PFQC +C F+ L H R H G KP
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
F C +C + F+R D+ RH KIH
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+P+ C + C + FSR D+L RH++IH G K + C +C + F+R D L H+R H G KP
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 291 FHCSVCFESFTQKALLNIHLRIH 313
F C +C F + H +IH
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
RP+ C V C F+ +L RH RIH G KPF C +C + FSR D L H++ H G K
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
+ C +C + F R D+ RH + H
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
Y C + C + F+R D+L RH+R H G KPF C +C +F++ L H+R HT KP A
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 321 CSICTESFSQKSNLYIHLKL 340
C IC F++ H K+
Sbjct: 64 CDICGRKFARSDERKRHTKI 83
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ + C V C + F+ + RH+R H G KPFQC +C +F++ +L H+R H G +P
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 207 FQCNVCYICFTNKSDLNRHSRIH 229
F C++C F + RH++IH
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C V C F++ L H+RIHT KP C IC +FS+ +L H++ G P
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 347 FKCDVCPNE---TFEKETQLSLHMR 368
F CD+C + + E++ +H+R
Sbjct: 62 FACDICGRKFARSDERKRHTKIHLR 86
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%)
Query: 126 EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCS 185
E C F E RH++IH G K F C +C + F+ H+R H G KPF C +C
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 68
Query: 186 ESFTQRSNLNIHLRIH 201
F + H +IH
Sbjct: 69 RKFARSDERKRHTKIH 84
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 351 VCPNET----FEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
CP E+ F + +L+ H+R G KPF+C +C F + L H+R PF C
Sbjct: 5 ACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 64
Query: 407 DICFKLFTKKSNLRTHIKTH 426
DIC + F + + H K H
Sbjct: 65 DICGRKFARSDERKRHTKIH 84
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 62 CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHLKSHSENK 121
C +R++R + LT H+R H F C C + F HL H+++H+ K
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKP----------FQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 122 VFRCEQCRFDFYVKREYNRHMKIH 145
F C+ C F E RH KIH
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKT 159
C + F L RH++ H+ K F+C C +F H++ H G K F C +C +
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 160 FTDKVKFNRHMRAH 173
F + RH + H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K F+C IC + ++R + LT H+RTH F C C + F RH
Sbjct: 32 KPFQCRICMRNFSRSDHLTTHIRTHTG----------EKPFACDICGRKFARSDERKRHT 81
Query: 115 KSH 117
K H
Sbjct: 82 KIH 84
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C V C F++ L H+RIH G +PFQC +C F+ L H R H G KP
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
F C +C + F+R D+ RH KIH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
RP+ C V C F+ +L RH RIH G KPF C +C + FSR D L H++ H G K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
+ C +C + F R D+ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+P+ C + C + FSR D+L RH++IH G K + C +C + F+R D L H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 291 FHCSVCFESFTQKALLNIHLRIH 313
F C +C F + H +IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
Y C + C + F+R D+L RH+R H G KPF C +C +F++ L H+R HT KP A
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 321 CSICTESFSQKSNLYIHLKL 340
C IC F++ H K+
Sbjct: 65 CDICGRKFARSDERKRHTKI 84
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ + C V C + F+ + RH+R H G KPFQC +C +F++ +L H+R H G +P
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 207 FQCNVCYICFTNKSDLNRHSRIH 229
F C++C F + RH++IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C V C F++ L H+RIHT KP C IC +FS+ +L H++ G P
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 347 FKCDVCPNE---TFEKETQLSLHMR 368
F CD+C + + E++ +H+R
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLR 87
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%)
Query: 126 EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCS 185
E C F E RH++IH G K F C +C + F+ H+R H G KPF C +C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 186 ESFTQRSNLNIHLRIH 201
F + H +IH
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 351 VCPNET----FEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
CP E+ F + +L+ H+R G KPF+C +C F + L H+R PF C
Sbjct: 6 ACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 407 DICFKLFTKKSNLRTHIKTH 426
DIC + F + + H K H
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 62 CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHLKSHSENK 121
C +R++R + LT H+R H F C C + F HL H+++H+ K
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKP----------FQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 122 VFRCEQCRFDFYVKREYNRHMKIH 145
F C+ C F E RH KIH
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKT 159
C + F L RH++ H+ K F+C C +F H++ H G K F C +C +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 160 FTDKVKFNRHMRAH 173
F + RH + H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K F+C IC + ++R + LT H+RTH F C C + F RH
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTG----------EKPFACDICGRKFARSDERKRHT 82
Query: 115 KSH 117
K H
Sbjct: 83 KIH 85
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%)
Query: 179 FQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
F C +C +SF + S L+ HL IH RP+ C C F KSD+ +H+ IH G KP C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 239 MCAKCFSRKDDLNRHMKIHEG 259
+C K FS+ +L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 263 YLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ C +C K F R L+ H+ H +P+ C C + F QK+ + H IHT KPH C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 323 ICTESFSQKSNLYIHLKLQHG 343
+C ++FSQ SNL H + G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 151 FLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
F C +C K+F + H+ H +P+ C C + F Q+S++ H IH G +P +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 211 VCYICFTNKSDLNRHSRIHNG 231
VC F+ S+L HSR H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 235 FLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
F C +C K F R L+ H+ IH ++ Y C C K F +K D+ +H H G KP C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 295 VCFESFTQKALLNIHLRIHTN 315
VC ++F+Q + L H R HT
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
F C +C F S L+ H IH+ +P+ C C K F +K D+ +H IH G K + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 267 MCPKCFTRKDDLNRHMRNHDG 287
+C K F++ +L H R H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCD 350
F C +C +SF + + L+ HL IH++++P+ C C + F QKS++ H + G P KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 351 VCPNETFEKETQLSLHMR 368
VC + F + + L H R
Sbjct: 62 VC-GKAFSQSSNLITHSR 78
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%)
Query: 123 FRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
F C+ C F + H+ IH + + C C K F K +H H G KP +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 183 VCSESFTQRSNLNIHLRIHDG 203
VC ++F+Q SNL H R H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 347 FKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
F C +C ++F++ + LS H+ +P+ C C + F +KS +K+H + P KC
Sbjct: 2 FDCKIC-GKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 407 DICFKLFTKKSNLRTHIKTH 426
+C K F++ SNL TH + H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
F C C K+F L+ HL HS+ + + C+ C F+ K + +H IH G K C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 155 VCSKTFTDKVKFNRHMRAHEG 175
VC K F+ H R H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 376 FKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH---EPIPCD 432
F C +C + F + S L HL + + P+ C C K F +KS+++ H H +P C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 433 KCPEIFEKKTDLQEHVDK 450
C + F + ++L H K
Sbjct: 62 VCGKAFSQSSNLITHSRK 79
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 146 DGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIR 205
G K++ C C K+FT K + +RHM H G++P+ C VC + F + +L H++IH GI+
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 206 PFQCNVCYICFTNKSDLNRH 225
P++CN+C F + +RH
Sbjct: 65 PYECNICAKRFMWRDSFHRH 84
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 174 EGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIK 233
G K + C C +SFT +S + H+ +H G+RP+ C VC F K L H +IH GIK
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 234 PFLCSMCAKCFSRKDDLNRHM 254
P+ C++CAK F +D +RH+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 258 EGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSK 317
G K Y C C K FT K +RHM H GL+P+ C VC + F K L H++IHT K
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 318 PHACSICTESFSQKSNLYIHL 338
P+ C+IC + F + + + H+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 202 DGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
D + P QC FT+KS +RH +H G++P+ C +C K F K L HMKIH G K
Sbjct: 8 DKLYPCQCGKS---FTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 262 RYLCTMCPKCFTRKDDLNRHM 282
Y C +C K F +D +RH+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 118 SENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIK 177
S +K++ C QC F K + +RHM +H G++ + C VC K F K HM+ H GIK
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 178 PFQCSVCSESFTQRSNLNIHL 198
P++C++C++ F R + + H+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLK 289
+G K + C C K F+ K +RHM +H G + Y C +C K F K L HM+ H G+K
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 290 PFHCSVCFESFTQKALLNIHLRIHTNS 316
P+ C++C + F + + H+ T S
Sbjct: 65 PYECNICAKRFMWRDSFHRHVTSCTKS 91
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 99 QCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSK 158
QC K+F K +RH+ H + + C C F +K HMKIH G+K + C++C+K
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 159 TFTDKVKFNRHM 170
F + F+RH+
Sbjct: 74 RFMWRDSFHRHV 85
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 39/66 (59%)
Query: 296 CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNE 355
C +SFT K+ + H+ +H +P+ C +C + F K +L H+K+ G+ P++C++C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 356 TFEKET 361
+++
Sbjct: 75 FMWRDS 80
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 354 NETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLF 413
++F ++Q HM G++P+ C +C + F K L H+++ + P++C+IC K F
Sbjct: 16 GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF 75
Query: 414 TKKSNLRTHIKT 425
+ + H+ +
Sbjct: 76 MWRDSFHRHVTS 87
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 372 GVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH---EP 428
G K + C C + F KS H+ + + P+ C +C K F K +L H+K H +P
Sbjct: 7 GDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 429 IPCDKCPEIFEKKTDLQEHVDKC 451
C+ C + F + HV C
Sbjct: 66 YECNICAKRFMWRDSFHRHVTSC 88
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 62 CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHLKSHSENK 121
C K + K++ H+ H + C C K F K HL H+K H+ K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRP----------YGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 122 VFRCEQCRFDFYVKREYNRHM 142
+ C C F + ++RH+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 54 VKKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRH 113
++ + C +C K++ K+ L H++ H + C+ C K F+ + +RH
Sbjct: 35 LRPYGCGVCGKKFKMKHHLVGHMKIHTG----------IKPYECNICAKRFMWRDSFHRH 84
Query: 114 LKS 116
+ S
Sbjct: 85 VTS 87
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 97 CSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMK---IHDGVKVFLC 153
C C K F+ K++L H + H+ K F C +C ++ K H ++ +VF C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 154 SVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHL-RIHDG 203
SVC +TF +++ HM +H G P++CS CS+ F Q+ +L H+ ++H G
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSR---IHNG 231
G +C C + F + L +H R H G +PF+C C C+ K +L H ++
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 232 IKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHM 282
+ F CS+C + F R+ +L HM H G Y C+ C + F +K DL HM
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRH-MRN--HD 286
+G C C K F K L H + H G K + C C KC+ RK++L H RN +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 287 GLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHL-KLQHG 343
+ F CSVC E+F ++ L +H+ HT P+ CS C++ F QK +L H+ KL G
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 286 DGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLK---LQH 342
G C C + F K L +H R HT KP C C + + +K NL H +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 343 GVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHL 395
F C VC ETF + +L LHM + G P+KCS C + F +K L+ H+
Sbjct: 63 SEQVFTCSVC-QETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 343 GVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLR---VSH 399
G + +C C ++ F + L +H R G KPF+C C + + +K L EH ++
Sbjct: 4 GSSGVECPTC-HKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 400 NVNPFKCDICFKLFTKKSNLRTHIKTHE---PIPCDKCPEIFEKKTDLQEHVDKCHN 453
+ F C +C + F ++ LR H+ +H P C C + F +K DLQ H+ K H+
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 259 GSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKA-LLNIHLR--IHTN 315
GS C C K F K L H R H G KPF C C + + +K LL R ++ +
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 316 SKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVH 371
+ CS+C E+F ++ L +H+ G P+KC C ++ F ++ L HM +H
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSC-SQQFMQKKDLQSHMIKLH 118
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 321 CSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTV--HGVKPFKC 378
C C + F K L +H + G PF+C C F KE L R + F C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 379 SMCDEGFPKKSVLKEHLRVSHNVN-PFKCDICFKLFTKKSNLRTH-IKTH 426
S+C E F ++ L+ H+ VSH P+KC C + F +K +L++H IK H
Sbjct: 70 SVCQETFRRRMELRLHM-VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K F+C C K Y RK L H FTCS C +TF + L H+
Sbjct: 34 KPFECPKCGKCYFRKENLLEH-------EARNCMNRSEQVFTCSVCQETFRRRMELRLHM 86
Query: 115 KSHSENKVFRCEQCRFDFYVKREYNRHM-KIHDG 147
SH+ ++C C F K++ HM K+H G
Sbjct: 87 VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 50/130 (38%), Gaps = 14/130 (10%)
Query: 50 GKKMVKKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWH 109
G +C C K++ K L H R H F C +C K + K +
Sbjct: 1 GSSGSSGVECPTCHKKFLSKYYLKVHNRKHTG----------EKPFECPKCGKCYFRKEN 50
Query: 110 LNRHLKSHSENK---VFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKF 166
L H + N+ VF C C+ F + E HM H G + CS CS+ F K
Sbjct: 51 LLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDL 110
Query: 167 NRHM-RAHEG 175
HM + H G
Sbjct: 111 QSHMIKLHSG 120
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 184 CSESFTQRSNLNIHLRIHDGIRPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCA 241
C++ +T+ S+L HLR H G +P++C C F +L RH R H G KPF C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 242 KCFSRKDDLNRHMKIHE 258
+ FSR D L HMK H+
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 240 CAKCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCF 297
C K +++ L H++ H G K Y CT C F R D+L RH R H G KPF C VC
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 298 ESFTQKALLNIHLRIHTN 315
SF++ L +H++ H N
Sbjct: 83 RSFSRSDHLALHMKRHQN 100
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 268 CPKCFTRKDDLNRHMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICT 325
C K +T+ L H+R H G KP+ C+ C F + L H R HT +KP C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 326 ESFSQKSNLYIHLK 339
SFS+ +L +H+K
Sbjct: 83 RSFSRSDHLALHMK 96
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 156 CSKTFTDKVKFNRHMRAHEGIKPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCY 213
C+K +T H+R H G KP++C+ C F + L H R H G +PFQC VC
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 214 ICFTNKSDLNRHSRIHN 230
F+ L H + H
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 354 NETFEKETQLSLHMRTVHGVKPFKCSM--CDEGFPKKSVLKEHLRVSHNVNPFKCDICFK 411
+ + K + L H+RT G KP+KC+ CD F + L H R PF+C +C +
Sbjct: 24 TKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNR 83
Query: 412 LFTKKSNLRTHIKTHE 427
F++ +L H+K H+
Sbjct: 84 SFSRSDHLALHMKRHQ 99
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 141 HMKIHDGVKVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHL 198
H++ H G K + C+ C F + RH R H G KPFQC VC+ SF++ +L +H+
Sbjct: 36 HLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Query: 199 RIH 201
+ H
Sbjct: 96 KRH 98
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRC--EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCS 157
C K + HL HL++H+ K ++C E C + F E RH + H G K F C VC+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 158 KTFTDKVKFNRHMRAHE 174
++F+ HM+ H+
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 324 CTESFSQKSNLYIHLKLQHGVNPFKC--DVCPNETFEKETQLSLHMRTVHGVKPFKCSMC 381
CT+ +++ S+L HL+ G P+KC + C + F + +L+ H R G KPF+C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGC-DWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 382 DEGFPKKSVLKEHLRVSHN 400
+ F + L H++ N
Sbjct: 82 NRSFSRSDHLALHMKRHQN 100
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 381 CDEGFPKKSVLKEHLRVSHNVNPFKC--DICFKLFTKKSNLRTHIKTH---EPIPCDKCP 435
C + + K S LK HLR P+KC + C F + L H + H +P C C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 436 EIFEKKTDLQEHVDKCHN 453
F + L H+ + N
Sbjct: 83 RSFSRSDHLALHMKRHQN 100
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 62 CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHLKSHSENK 121
C K Y + + L HLRTH T C F L RH + H+ K
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKC--------TWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 122 VFRCEQCRFDFYVKREYNRHMKIH 145
F+C C F HMK H
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMKRH 98
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 406 CDI--CFKLFTKKSNLRTHIKTH---EPIPC--DKCPEIFEKKTDLQEHVDK 450
CD C K++TK S+L+ H++TH +P C + C F + +L H K
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 182 SVCSESFTQRSNLNIHLRIHDGIRPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSM 239
+ C +++T+ S+L HLR H G +P+ C+ C F +L RH R H G +PF C
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 71
Query: 240 CAKCFSRKDDLNRHMKIH 257
C + FSR D L HMK H
Sbjct: 72 CDRAFSRSDHLALHMKRH 89
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 212 CYICFTNKSDLNRHSRIHNGIKPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCP 269
C +T S L H R H G KP+ C C F+R D+L RH + H G + + C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 270 KCFTRKDDLNRHMRNH 285
+ F+R D L HM+ H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 238 SMCAKCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSV 295
+ C K +++ L H++ H G K Y C C F R D+L RH R H G +PF C
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 71
Query: 296 CFESFTQKALLNIHLRIH 313
C +F++ L +H++ H
Sbjct: 72 CDRAFSRSDHLALHMKRH 89
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 268 CPKCFTRKDDLNRHMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICT 325
C K +T+ L H+R H G KP+HC C F + L H R HT +P C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 326 ESFSQKSNLYIHLK 339
+FS+ +L +H+K
Sbjct: 74 RAFSRSDHLALHMK 87
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 154 SVCSKTFTDKVKFNRHMRAHEGIKPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNV 211
+ C KT+T H+R H G KP+ C C F + L H R H G RPFQC
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 71
Query: 212 CYICFTNKSDLNRHSRIH 229
C F+ L H + H
Sbjct: 72 CDRAFSRSDHLALHMKRH 89
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 26/104 (25%)
Query: 98 SQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCS 157
+ C KT+ HL HL++H+ K + C+ DG C
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDW------------------DG--------CG 45
Query: 158 KTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIH 201
F + RH R H G +PFQC C +F++ +L +H++ H
Sbjct: 46 WKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 349 CDVCP-NETFEKETQLSLHMRTVHGVKPFKCSM--CDEGFPKKSVLKEHLRVSHNVNPFK 405
CD +T+ K + L H+RT G KP+ C C F + L H R PF+
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 406 CDICFKLFTKKSNLRTHIKTH 426
C C + F++ +L H+K H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 314 TNSKPHACSI--CTESFSQKSNLYIHLKLQHGVNPFKCDVCP-NETFEKETQLSLHMRTV 370
+ + H C C +++++ S+L HL+ G P+ CD F + +L+ H R
Sbjct: 2 SRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 61
Query: 371 HGVKPFKCSMCDEGFPKKSVLKEHLR 396
G +PF+C CD F + L H++
Sbjct: 62 TGHRPFQCQKCDRAFSRSDHLALHMK 87
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 379 SMCDEGFPKKSVLKEHLRVSHNVNPFKCDI--CFKLFTKKSNLRTHIK---THEPIPCDK 433
+ C + + K S LK HLR P+ CD C F + L H + H P C K
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 71
Query: 434 CPEIFEKKTDLQEHVDK 450
C F + L H+ +
Sbjct: 72 CDRAFSRSDHLALHMKR 88
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 62 CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQ--CPKTFVDKWHLNRHLKSHSE 119
C K Y + + L HLRTH + C C F L RH + H+
Sbjct: 14 CGKTYTKSSHLKAHLRTHTG----------EKPYHCDWDGCGWKFARSDELTRHYRKHTG 63
Query: 120 NKVFRCEQCRFDFYVKREYNRHMKIH 145
++ F+C++C F HMK H
Sbjct: 64 HRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 182 SVCSESFTQRSNLNIHLRIHDGIRPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSM 239
+ C +++T+ S+L HLR H G +P+ C+ C F +L RH R H G +PF C
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 70
Query: 240 CAKCFSRKDDLNRHMKIH 257
C + FSR D L HMK H
Sbjct: 71 CDRAFSRSDHLALHMKRH 88
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 212 CYICFTNKSDLNRHSRIHNGIKPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCP 269
C +T S L H R H G KP+ C C F+R D+L RH + H G + + C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 270 KCFTRKDDLNRHMRNH 285
+ F+R D L HM+ H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 238 SMCAKCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSV 295
+ C K +++ L H++ H G K Y C C F R D+L RH R H G +PF C
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 70
Query: 296 CFESFTQKALLNIHLRIH 313
C +F++ L +H++ H
Sbjct: 71 CDRAFSRSDHLALHMKRH 88
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 268 CPKCFTRKDDLNRHMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICT 325
C K +T+ L H+R H G KP+HC C F + L H R HT +P C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 326 ESFSQKSNLYIHLK 339
+FS+ +L +H+K
Sbjct: 73 RAFSRSDHLALHMK 86
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 154 SVCSKTFTDKVKFNRHMRAHEGIKPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNV 211
+ C KT+T H+R H G KP+ C C F + L H R H G RPFQC
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 70
Query: 212 CYICFTNKSDLNRHSRIH 229
C F+ L H + H
Sbjct: 71 CDRAFSRSDHLALHMKRH 88
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 26/104 (25%)
Query: 98 SQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCS 157
+ C KT+ HL HL++H+ K + C+ DG C
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDW------------------DG--------CG 44
Query: 158 KTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIH 201
F + RH R H G +PFQC C +F++ +L +H++ H
Sbjct: 45 WKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 349 CDVCP-NETFEKETQLSLHMRTVHGVKPFKCSM--CDEGFPKKSVLKEHLRVSHNVNPFK 405
CD +T+ K + L H+RT G KP+ C C F + L H R PF+
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 406 CDICFKLFTKKSNLRTHIKTH 426
C C + F++ +L H+K H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 319 HACSI--CTESFSQKSNLYIHLKLQHGVNPFKCDVCP-NETFEKETQLSLHMRTVHGVKP 375
H C C +++++ S+L HL+ G P+ CD F + +L+ H R G +P
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 376 FKCSMCDEGFPKKSVLKEHLR 396
F+C CD F + L H++
Sbjct: 66 FQCQKCDRAFSRSDHLALHMK 86
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 379 SMCDEGFPKKSVLKEHLRVSHNVNPFKCDI--CFKLFTKKSNLRTHIK---THEPIPCDK 433
+ C + + K S LK HLR P+ CD C F + L H + H P C K
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 70
Query: 434 CPEIFEKKTDLQEHVDK 450
C F + L H+ +
Sbjct: 71 CDRAFSRSDHLALHMKR 87
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 62 CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQ--CPKTFVDKWHLNRHLKSHSE 119
C K Y + + L HLRTH + C C F L RH + H+
Sbjct: 13 CGKTYTKSSHLKAHLRTHTG----------EKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
Query: 120 NKVFRCEQCRFDFYVKREYNRHMKIH 145
++ F+C++C F HMK H
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 203 GIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGS-- 260
G C +C F + LNRH H+G KP+ C +C F RKD ++ H++ H+GS
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRN 284
K Y+C C K F+R D LN H++
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 147 GVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGI-- 204
G C +C K F D NRH +H G KP+ C VC F ++ ++ H+R HDG
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 205 RPFQCNVCYICFTNKSDLNRH-SRIHNG 231
+P+ C C F+ LN H ++H+G
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGL- 288
+G C +C K F LNRH H G K Y C +C F RKD ++ H+R+HDG
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 289 -KPFHCSVCFESFTQKALLNIHLR-IHTN 315
KP+ C C + F++ LN H++ +H+
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 258 EGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNS- 316
GS C +C K F LNRH +H G KP+ C VC F +K ++ H+R H S
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 317 -KPHACSICTESFSQKSNLYIHLKLQH 342
KP+ C C + FS+ +L H+K H
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 96 TCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGV--KVFLC 153
C C K F D +HLNRH SHS K + C C F K + H++ HDG K ++C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 154 SVCSKTFTDKVKFNRHMR 171
C K F+ N H++
Sbjct: 69 QSCGKGFSRPDHLNGHIK 86
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 314 TNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGV 373
+ S AC IC + F +L H G P+ C VC F+++ ++S H+R+ G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVC-GLRFKRKDRMSYHVRSHDGS 61
Query: 374 --KPFKCSMCDEGFPKKSVLKEHLRVSHN 400
KP+ C C +GF + L H++ H+
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 293 CSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGV--NPFKCD 350
C +C + F LN H H+ KP++C +C F +K + H++ G P+ C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 351 VCPNETFEKETQLSLHMRTVH 371
C + F + L+ H++ VH
Sbjct: 70 SC-GKGFSRPDHLNGHIKQVH 89
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K + C +C R+ RK+R++ H+R+H+ + C C K F HLN H+
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYHVRSHDG--------SVGKPYICQSCGKGFSRPDHLNGHI 85
Query: 115 K 115
K
Sbjct: 86 K 86
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 372 GVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTHE---- 427
G C +C + F L H P+ C +C F +K + H+++H+
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 428 -PIPCDKCPEIFEKKTDLQEHVDKCHN 453
P C C + F + L H+ + H+
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 13/101 (12%)
Query: 50 GKKMVKKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWH 109
G C IC K + L H +H ++C C F K
Sbjct: 1 GSSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKP----------YSCPVCGLRFKRKDR 50
Query: 110 LNRHLKSH--SENKVFRCEQCRFDFYVKREYNRHMK-IHDG 147
++ H++SH S K + C+ C F N H+K +H G
Sbjct: 51 MSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 240 CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSV--CF 297
C K F + +H+ H G + ++C C K F L RH H G KPF C+ C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 298 ESFTQKALLNIHLRIHTNSKPHACSI--CTESFSQKSNLYIHL 338
+ F+ L H+RIHT +P+ C C + F+Q +NL H+
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSV--CSESFTQRSNLNIH 197
+H+ H G +V +C+ C K F + K RH H G KPFQC+ C + F+ NL H
Sbjct: 25 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83
Query: 198 LRIHDGIRPFQC--NVCYICFTNKSDLNRHSRIHNGIK 233
+RIH G RP+ C + C F ++L H H K
Sbjct: 84 VRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 184 CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSM--CA 241
C++ F S + HL H G R C C F S L RH +H G KPF C+ C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 242 KCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNRHMRNHDGLK 289
K FS +L H++IH G + Y+C C K F + +L H+ H K
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 212 CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTM--CP 269
C F + S + +H H G + +C+ C K F L RH +H G K + CT C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 270 KCFTRKDDLNRHMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIHTNSK 317
K F+ +L H+R H G +P+ C C + F Q L H+ H +K
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 351 VCPNE----TFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
CP++ F + + H+ T HG + C+ C + F + S LK H V PF+C
Sbjct: 7 ACPHKGCTKMFRDNSAMRKHLHT-HGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Query: 407 DI--CFKLFTKKSNLRTHIKTHEP-----IPCDKCPEIFEKKTDLQEHV 448
C K F+ NLRTH++ H P D C + F + T+L+ H+
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 324 CTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSM--C 381
CT+ F S + HL HG C C + F + ++L H G KPF+C+ C
Sbjct: 13 CTKMFRDNSAMRKHLHT-HGPRVHVCAEC-GKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 382 DEGFPKKSVLKEHLRVSHNVNPFKC--DICFKLFTKKSNLRTHIKTH 426
+ F L+ H+R+ P+ C D C K F + +NL++HI TH
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 62 CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHLKSHSENK 121
C K + + + HL TH C++C K FV+ L RH H+ K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVH-----------VCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 122 VFRC--EQCRFDFYVKREYNRHMKIHDGVKVFLCSV--CSKTFTDKVKFNRHMRAHEGIK 177
F+C E C F + H++IH G + ++C C+K F H+ H K
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 40/81 (49%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFL 236
K F C C FT+ NL IH R H RP+ C++C+ F + L H IH+ KPF
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 237 CSMCAKCFSRKDDLNRHMKIH 257
C C K F + L H +H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFH 292
K F+C C + F++ +L H + H + Y C +C K F R+D L H H KPF
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 293 CSVCFESFTQKALLNIHLRIH-TNSKPHACS 322
C C + F Q L +H +H S P A S
Sbjct: 76 CQECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
K ++C C + FT+ +L H R H +P+ C +C ++F ++ L H IH+ KP
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 321 CSICTESFSQKSNLYIHLKL 340
C C + F Q L +H L
Sbjct: 76 CQECGKGFCQSRTLAVHKTL 95
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQ 208
K F+C C + FT H R H +P+ C +C ++F ++ +L H IH +PF+
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 209 CNVCYICFTNKSDLNRHSRIH 229
C C F L H +H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFK 348
K F C C FT+ L IH R HT+ +P+ C IC ++F ++ +L H + PFK
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 349 CDVCPNETFEKET---QLSLHMRT 369
C C + T +LHM+T
Sbjct: 76 CQECGKGFCQSRTLAVHKTLHMQT 99
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 36/81 (44%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYL 264
+ F C C FT +L H R H +P+ C +C K F R+D L H IH K +
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 265 CTMCPKCFTRKDDLNRHMRNH 285
C C K F + L H H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 347 FKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
F C C F K L +H RT +P+ C +C + F ++ L++H + PFKC
Sbjct: 18 FICKFC-GRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 407 DICFKLFTKKSNLRTHIKTH 426
C K F + L H H
Sbjct: 77 QECGKGFCQSRTLAVHKTLH 96
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 374 KPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH---EPIP 430
K F C C F K L H R + P+ CDIC K F ++ +LR H H +P
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 431 CDKCPEIFEKKTDLQEH 447
C +C + F + L H
Sbjct: 76 CQECGKGFCQSRTLAVH 92
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%)
Query: 121 KVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQ 180
K F C+ C F H + H + + C +C K F + H H KPF+
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 181 CSVCSESFTQRSNLNIHLRIH 201
C C + F Q L +H +H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 52 KMVKKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLN 111
K K+F C C + + + L H RTH +TC C K F + HL
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERTH----------TDERPYTCDICHKAFRRQDHLR 62
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
H HS+ K F+C++C F R H +H
Sbjct: 63 DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
F C C + F ++L H ++H++ + + C+ C F + H IH K F C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 155 VCSKTF 160
C K F
Sbjct: 78 ECGKGF 83
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 12/128 (9%)
Query: 228 IHNGIKPFLCSMCA-----KCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNR 280
IH K F+C + F + L HM+ H G K + CT C K ++R ++L
Sbjct: 28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKT 87
Query: 281 HMRNHDGLKPFHCS--VCFESFTQKALLNIHL-RIHTNSKPHACSI--CTESFSQKSNLY 335
H+R+H G KP+ C C ++F+ + H R H+N KP+ C + CT+ ++ S+L
Sbjct: 88 HLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLR 147
Query: 336 IHLKLQHG 343
H+K HG
Sbjct: 148 KHVKTVHG 155
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 32/138 (23%)
Query: 293 CSVCFESFTQKALLNIHLRIHTNSKPHACSI--CTESFSQKSNLYIHLKLQHGVNPFKCD 350
CS F + +L +H+R HT KPH C+ C +S+S+ NL HL+ G P+ C+
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Query: 351 VCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSH-NVNPFKCDI- 408
C + F S +H +H N P+ C +
Sbjct: 102 H---------------------------EGCSKAFSNASDRAKHQNRTHSNEKPYVCKLP 134
Query: 409 -CFKLFTKKSNLRTHIKT 425
C K +T S+LR H+KT
Sbjct: 135 GCTKRYTDPSSLRKHVKT 152
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 141 HMKIHDGVKVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQC--SVCSESFTQRSNLNI 196
HM+ H G K C+ C K+++ H+R+H G KP+ C CS++F+ S+
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAK 117
Query: 197 HL-RIHDGIRPFQCNV--CYICFTNKSDLNRHSRIHNG 231
H R H +P+ C + C +T+ S L +H + +G
Sbjct: 118 HQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Query: 97 CSQCPKTFVDKWHLNRHLKSHSENKVFRC--EQCRFDFYVKREYNRHMKIHDGVKVFLC- 153
CS+ + F ++ L H++ H+ K +C E CR + H++ H G K ++C
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Query: 154 -SVCSKTFTDKVKFNRHM-RAHEGIKPFQCSV--CSESFTQRSNLNIHLRIHDG 203
CSK F++ +H R H KP+ C + C++ +T S+L H++ G
Sbjct: 102 HEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 348 KCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEG--------FPKKSVLKEHLRVSH 399
+ D C E F+ + QL H+ + H K +C G F + +L H+R
Sbjct: 5 RWDGCSQE-FDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 400 NVNPFKC--DICFKLFTKKSNLRTHIKTH---EPIPC--DKCPEIFEKKTDLQEHVDKCH 452
P KC + C K +++ NL+TH+++H +P C + C + F +D +H ++ H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 453 N 453
+
Sbjct: 124 S 124
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
KP++C C SF + NL H +H G +P++CN+C F ++L H+RIH+G KP
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+P++C+ C F K +L H +H G KP+ C++C F+R +L H +IH G K
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
K + C C +F K H H G KP++C++C F + +NL H RIH G +P
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ C C SF K L H +HT KP+ C+IC F++ +NL H ++ G P
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
K Y C C F K +L H H G KP+ C++C F + A L H RIH+ KP
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
KP+ C C F K +L H +H G K Y C +C F R +L H R H G KP
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 374 KPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH 426
KP+KC C F K L H V P++C+IC F + +NL+TH + H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 120 NKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
+K ++C++C+ F K H +H G K + C++C F H R H G KP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKP 375
KP+ C C SF K NL H + G P++C++C F + L H R G KP
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNIC-GAQFNRPANLKTHTRIHSGEKP 73
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 346 PFKCDVCPNETFEKETQLSLHMRTVH-GVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNP 403
P+KCD C +F + L+ H +TVH G KP++C++C F + + LK H R+ P
Sbjct: 17 PYKCDRC-QASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVK 149
+ C +C +F K +L H H+ K +RC C F H +IH G K
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
+RY C C K F+ DL++H R H G KP+ C C ++F Q++ L H R+HT S P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ + C C K+F+ ++H R H G KP++C C ++F QRS+L H R+H G P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGS 260
R ++C+ C F++ SDL++H R H G KP+ C C K F ++ L H ++H GS
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 179 FQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
++C C +SF+ S+L+ H R H G +P++C+ C F +S L H R+H G P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%)
Query: 235 FLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+ C C K FS DL++H + H G K Y C C K F ++ L H R H G P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+ C C +SF+ + L+ H R HT KP+ C C ++F Q+S+L H ++ G P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 347 FKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNP 403
+KCD C ++F + LS H RT G KP+KC C + F ++S L H RV P
Sbjct: 19 YKCDEC-GKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 376 FKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH 426
+KC C + F S L +H R P+KCD C K F ++S+L H + H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 119 ENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
E + ++C++C F + ++H + H G K + C C K F + H R H G P
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 321 CSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKP 375
C C +SFS S+L H + G P+KCD C + F + + L H R G P
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC-GKAFIQRSHLIGHHRVHTGSGP 74
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 404 FKCDICFKLFTKKSNLRTHIKTH---EPIPCDKCPEIFEKKTDLQEH 447
+KCD C K F+ S+L H +TH +P CD+C + F +++ L H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDG 147
+ C +C K+F L++H ++H+ K ++C++C F + H ++H G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 51 KKMVKKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHL 110
++ +++KC+ C K ++ + L+ H RTH + C +C K F+ + HL
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTG----------EKPYKCDECGKAFIQRSHL 62
Query: 111 NRHLKSHS 118
H + H+
Sbjct: 63 IGHHRVHT 70
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 153 CSVCSKTFTDKVKFNRHMRAHEGIKPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCN 210
C K+F K K H+R H G KPF C C + F + NL IH R H G +PF+C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 211 V--CYICFTNKSDLNRHSRIHNGIK 233
C F N SD +H +H K
Sbjct: 125 FEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 180 QCSVCSESFTQRSNLNIHLRIHDGIRPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLC 237
+C +SF + L H+R+H G +PF C C F +L H R H G KPF C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 238 SM--CAKCFSRKDDLNRHMKIHEGSK 261
C + F+ D +HM +H K
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 237 CSMCAKCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCS 294
C K F K L H+++H G K + C C K F R ++L H R H G KPF C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 295 V--CFESFTQKALLNIHLRIHTNSK 317
C F + H+ +HT+ K
Sbjct: 125 FEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 298 ESFTQKALLNIHLRIHTNSKPHACSI--CTESFSQKSNLYIHLKLQHGVNPFKCD 350
+SF K L H+R+HT KP C C + F++ NL IH + G PFKC+
Sbjct: 70 KSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 321 CSICTESFSQKSNLYIHLKLQHGVNPFKCDVCP-NETFEKETQLSLHMRTVHGVKPFKCS 379
C +SF K L H+++ G PF C + F + L +H RT G KPFKC
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 380 M--CDEGFPKKSVLKEHLRV 397
CD F S K+H+ V
Sbjct: 125 FEGCDRRFANSSDRKKHMHV 144
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 132 FYVKREYNRHMKIHDGVKVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSV--CSES 187
F K + H+++H G K F C C K F H R H G KPF+C C
Sbjct: 72 FKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRR 131
Query: 188 FTQRSNLNIHLRIH 201
F S+ H+ +H
Sbjct: 132 FANSSDRKKHMHVH 145
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 39/138 (28%)
Query: 324 CTESFSQKSNLYIHLKLQHGVNPFK------CDVCPNE--TFEKETQLSLHMRTVHGVKP 375
C +FS L H+ ++H P + + CP E +F+ + +L H+R G KP
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 376 FKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH---EPIPC- 431
F C FP C K+F + NL+ H +TH +P C
Sbjct: 91 FPCP-----FPG---------------------CGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 432 -DKCPEIFEKKTDLQEHV 448
+ C F +D ++H+
Sbjct: 125 FEGCDRRFANSSDRKKHM 142
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 17/91 (18%)
Query: 62 CP---KRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCS--QCPKTFVDKWHLNRHLKS 116
CP K + K +L NH+R H F C C K F +L H ++
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKP----------FPCPFPGCGKIFARSENLKIHKRT 114
Query: 117 HSENKVFRC--EQCRFDFYVKREYNRHMKIH 145
H+ K F+C E C F + +HM +H
Sbjct: 115 HTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHE 258
RPF CN C + + S L+RH R H G +P C C KCF + ++NRH+K+H+
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHD 202
+ F C+ C KT+ D +RH RAH G +P C C + F +S +N HL++H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIH 229
+PF C+ C +++ S L+ H R H G RP C C CF ++S++NRH ++H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHD 286
+PF C+ C K + L+RH + H G + C C KCF + ++NRH++ H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 263 YLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTN 315
+ C C K + L+RH R H G +P C C + F ++ +N HL++H N
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKL 340
+PF C+ C +++ + L+ H R H +P +C C + F +S + HLK+
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV 54
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHD 146
F C+ C KT+ D L+RH ++H + C +C F + E NRH+K+H
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 374 KPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTHEPIP 430
+PF C+ C + + S L H R P C C K F +S + H+K H+ P
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP 59
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 346 PFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHN 400
PF C+ C +T+ + LS H R G +P C C + F +S + HL+V N
Sbjct: 4 PFFCNFC-GKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
+ F CN C K Y + L+ H R H +C +C K F D+ +NRHL
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPR----------SCPECGKCFRDQSEVNRHL 52
Query: 115 KSH 117
K H
Sbjct: 53 KVH 55
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 121 KVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHE 174
+ F C C + +RH + H G + C C K F D+ + NRH++ H+
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH---EPIPCDKCPEIFEKKTDLQEHV 448
PF C+ C K + S L H + H P C +C + F ++++ H+
Sbjct: 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHL 52
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 204 IRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKI 256
++PFQC +C F+ L H R H G KPF C +C + F+R D+ RH I
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 288 LKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQH 342
+KPF C +C +F++ L H+R HT KP AC IC F++ H +QH
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 176 IKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPF 235
+KPFQC +C +F++ +L H+R H G +PF C++C F + RH I + I P
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPI 59
Query: 236 L 236
L
Sbjct: 60 L 60
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 232 IKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRH 281
+KPF C +C + FSR D L H++ H G K + C +C + F R D+ RH
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 373 VKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTH--IKTHEPIP 430
+KPF+C +C F + L H+R PF CDIC + F + + H I+ PI
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPIL 60
Query: 431 CDKCPEIFEKKTDLQEHVDKCHNL 454
DK E+ K L+ V + L
Sbjct: 61 EDKVEELLSKNYHLENEVARLKKL 84
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 344 VNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNP 403
+ PF+C +C F + L+ H+RT G KPF C +C F + K H + H + P
Sbjct: 1 MKPFQCRICMR-NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILP 58
Query: 404 FKCDICFKLFTKKSNLRTHI 423
D +L +K +L +
Sbjct: 59 ILEDKVEELLSKNYHLENEV 78
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQ 302
K + C +C + F+R D L H+R H G KPF C +C F +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 148 VKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQ 190
+K F C +C + F+ H+R H G KPF C +C F +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVC 352
KP C IC +FS+ +L H++ G PF CD+C
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 37
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 54 VKKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRH 113
+K F+C IC + ++R + LT H+RTH F C C + F RH
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTG----------EKPFACDICGRKFARSDERKRH 50
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKI 144
F C C + F HL H+++H+ K F C+ C F E RH I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 121 KVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRH 169
K F+C C +F H++ H G K F C +C + F + RH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 232 IKPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNH 285
++P+ C + C + FSR D+L RH++IH G K + C +C + F+R D L H+R H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 204 IRPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIH 257
+RP+ C V C F+ +L RH RIH G KPF C +C + FSR D L H++ H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHT 314
Y C + C + F+R D+L RH+R H G KPF C +C +F++ L H+R HT
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 370 VHGVKPFKCSM--CDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH 426
V ++P+ C + CD F + L H+R+ PF+C IC + F++ +L THI+TH
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 148 VKVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIH 201
++ + C V C + F+ + RH+R H G KPFQC +C +F++ +L H+R H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 176 IKPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIH 229
++P+ C V C F++ L H+RIH G +PFQC +C F+ L H R H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 288 LKPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLK 339
++P+ C V C F++ L H+RIHT KP C IC +FS+ +L H++
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 317 KPHACSI--CTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRT 369
+P+AC + C FS+ L H+++ G PF+C +C F + L+ H+RT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRIC-MRNFSRSDHLTTHIRT 71
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 126 EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAH 173
E C F E RH++IH G K F C +C + F+ H+R H
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 344 VNPFKCDV--CPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRV 397
+ P+ C V C + F + +L+ H+R G KPF+C +C F + L H+R
Sbjct: 17 MRPYACPVESC-DRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 54 VKKFKCNI--CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLN 111
++ + C + C +R++R + LT H+R H F C C + F HL
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTG----------QKPFQCRICMRNFSRSDHLT 66
Query: 112 RHLKSHS 118
H+++H+
Sbjct: 67 THIRTHT 73
>pdb|2I99|A Chain A, Crystal Structure Of Human Mu_crystallin At 2.6 Angstrom
pdb|2I99|B Chain B, Crystal Structure Of Human Mu_crystallin At 2.6 Angstrom
Length = 312
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 511 EDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHSSIFFDS 570
++A AD+++T T ++ P+L EW+K AHINAVGA ELD + + ++ DS
Sbjct: 191 QEAVAGADVIITVTLATEPILFGEWVKP-GAHINAVGASRPDWRELDDELMKEAVLYVDS 249
Query: 571 EAAARGE 577
+ AA E
Sbjct: 250 QEAALKE 256
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNS 316
K Y C C K F+R L +H R H G KP+ C C ++F+Q + L H RIHT+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNH 285
KP+ C C K FSR L +H ++H G K Y C C K F++ L H R H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIH 257
+P+ C C F+ S L +H R+H G KP+ C C K FS+ L H +IH
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKL 340
KP+ C C ++F++ ++L H R+HT KP+ C C ++FSQ S L H ++
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHN 230
KP+ C C ++F++ S L H R+H G +P++C C F+ S L H RIH
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 374 KPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTHEPIP 430
KP+ C C + F + S+L +H RV P+KC C K F++ S L H + H P
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP 69
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIH 201
K + C C K F+ +H R H G KP++C C ++F+Q S L H RIH
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 346 PFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNP 403
P+ C C + F + + L H R G KP+KC C + F + S L H R+ H P
Sbjct: 14 PYGCVEC-GKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI-HTSGP 69
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKP 375
KP+ C C ++FS+ S L H ++ G P+KC C + F + + L H R +H P
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLEC-GKAFSQNSGLINHQR-IHTSGP 69
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 121 KVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAH 173
K + C +C F +H ++H G K + C C K F+ H R H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH---EPIPCDKCPEIFEKKTDLQEH 447
P+ C C K F++ S L H + H +P C +C + F + + L H
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
+ C +C K F L +H + H+ K ++C +C F H +IH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 77/204 (37%), Gaps = 36/204 (17%)
Query: 261 KRYLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHC--SVCFESFTQKALLNIHLRIHTNS 316
KRY+C+ C + + L H+ H G KPF C C + FT L H HT
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 317 KPHACSI--CTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVK 374
K C C F+ K+N+ H H + VC E
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIK-ICVYVCHFEN------------------ 111
Query: 375 PFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC--DICFKLFTKKSNLRTHIKTHEPIPC- 431
C + F K + LK H P++C + C K F+ S L+ H K H PC
Sbjct: 112 ------CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK 165
Query: 432 --DKCPEIFEKKTDLQEHVDKCHN 453
D C + + T +HV +CH
Sbjct: 166 KDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 13/159 (8%)
Query: 184 CSESFTQRSNLNIHLRIHDGIRPFQC--NVCYICFTNKSDLNRHSRIHNGIKPFLCSM-- 239
C ++ + L HL H G +PF C C FT+ L RHS H G K F C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 240 CAKCFSRKDDLNRHMKIHEGSK--RYLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHC-- 293
C F+ K ++ +H K Y+C C K F + + L H +H P+ C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 294 SVCFESFTQKALLNIHLRIHTN---SKPHACSICTESFS 329
C + F+ + L H ++H K +CS ++++
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWT 178
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 64/163 (39%), Gaps = 22/163 (13%)
Query: 53 MVKKFKCNI--CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQ--CPKTFVDKW 108
+ K++ C+ C Y + +L HL H F C + C K F
Sbjct: 9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKP----------FPCKEEGCEKGFTSLH 58
Query: 109 HLNRHLKSHSENKVFRCEQ--CRFDFYVKREYNRHMKIHDGVK--VFLCSV--CSKTFTD 162
HL RH +H+ K F C+ C F K +H +K V++C C K F
Sbjct: 59 HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKK 118
Query: 163 KVKFNRHMRAHEGIKPFQC--SVCSESFTQRSNLNIHLRIHDG 203
+ H +H P++C C + F+ S L H ++H G
Sbjct: 119 HNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 235 FLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRN-HDG 287
F+C +C + F+R++ L RH + H K Y C +C + FTR+D L RH + H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRH-MKIHEGS 260
F C VC F + L RH R H KP+ C +C + F+R+D L RH KIH G+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 151 FLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHL-RIHDG 203
F+C VC++ F + RH R+H KP+ C +C+ +FT+R L H +IH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 263 YLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHL-RIHTNS 316
++C +C + F R++ L RH R+H KP+ C +C +FT++ LL H +IH+ +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVN 345
F C VC +F ++ L H R HTN KP+ C +C +F+++ L H + H N
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 179 FQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHS-RIHNG 231
F C VC+ +F ++ +L H R H +P+ C +C FT + L RH+ +IH+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 404 FKCDICFKLFTKKSNLRTHIKTH---EPIPCDKCPEIFEKKTDLQEHVDKCHN 453
F C++C + F ++ +L+ H ++H +P PC C F ++ L H K H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 347 FKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVN 402
F C+VC F ++ L H R+ KP+ C +C+ F ++ +L H + H+ N
Sbjct: 3 FVCEVC-TRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 376 FKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIK 424
F C +C F ++ LK H R N P+ C +C + FT++ L H +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRH-MKIHDG 147
F C C + F + HL RH +SH+ K + C C F + RH KIH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 321 CSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVH 371
C +CT +F+++ +L H + P+ C +C N F + L H + +H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLC-NRAFTRRDLLIRHAQKIH 54
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 123 FRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRH-MRAHEG 175
F CE C F + RH + H K + C +C++ FT + RH + H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 293 CSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQH 342
CS C + F LNIHLR HT KP+ C C + +QK++L HL+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 153 CSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIH 201
CS C K F N H+R H G KP++C C + Q+++L HL H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHN 230
G +CS C + F LNIHLR H G +P++C C K+ L H H+
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%)
Query: 259 GSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIH 313
GS C+ C K F LN H+R H G KP+ C C + QK L HL H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 343 GVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSH 399
G + +C C + F L++H+RT G KP+KC C+ +K+ L+ HL H
Sbjct: 1 GSSSRECSYC-GKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 372 GVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH 426
G +CS C + F L HLR P+KC+ C +K++LR H++ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 237 CSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNH 285
CS C K F LN H++ H G K Y C C +K L H+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 97 CSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
CS C K F ++LN HL++H+ K ++CE C + K H++ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 203 GIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIH 257
G +C+ C F + LN H R H G KP+ C C ++K L H++ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 315 NSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVH 371
S CS C + F L IHL+ G P+KC+ C +K T L H+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQK-TSLRYHLERHH 56
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 405 KCDICFKLFTKKSNLRTHIKTH---EPIPCDKCPEIFEKKTDLQEHVDKCH 452
+C C K F L H++TH +P C+ C +KT L+ H+++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|1VLL|A Chain A, Crystal Structure Of Alanine Dehydrogenase (Af1665) From
Archaeoglobus Fulgidus At 2.80 A Resolution
pdb|1VLL|B Chain B, Crystal Structure Of Alanine Dehydrogenase (Af1665) From
Archaeoglobus Fulgidus At 2.80 A Resolution
Length = 334
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 511 EDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHSSIFFDS 570
E+A+R D+LVT T S PV+K EW+ ++ HINA+GA ELD I + I D
Sbjct: 195 EEASR-CDVLVTTTPSRKPVVKAEWV-EEGTHINAIGADGPGKQELDVEILKKAKIVVDD 252
Query: 571 EAAAR--GEL-----KGL--YEQVPANMVGEVGGLIAANLTRDARYPLTVFHSMGV 617
A+ GE+ KG+ E V A +GEV + R++ +T+F S G+
Sbjct: 253 LEQAKHGGEINVAVSKGVIGVEDVHAT-IGEV--IAGLKDGRESDEEITIFDSTGL 305
>pdb|1OMO|A Chain A, Alanine Dehydrogenase Dimer WBOUND NAD (ARCHAEAL)
pdb|1OMO|B Chain B, Alanine Dehydrogenase Dimer WBOUND NAD (ARCHAEAL)
Length = 322
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 511 EDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHSSIFFDS 570
E+A+R D+LVT T S PV+K EW+ ++ HINA+GA ELD I + I D
Sbjct: 183 EEASR-CDVLVTTTPSRKPVVKAEWV-EEGTHINAIGADGPGKQELDVEILKKAKIVVDD 240
Query: 571 EAAAR--GEL-----KGL--YEQVPANMVGEVGGLIAANLTRDARYPLTVFHSMGV 617
A+ GE+ KG+ E V A +GEV + R++ +T+F S G+
Sbjct: 241 LEQAKHGGEINVAVSKGVIGVEDVHAT-IGEV--IAGLKDGRESDEEITIFDSTGL 293
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 228 IHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDG 287
I +G ++C +C + + L RH IH K+Y C C K F + +H +H G
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG 75
Query: 288 LKPFHCSVCFESFTQKALLNIHLR 311
+ + C C +SF ++ H++
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHIK 99
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 200 IHDGIRPFQCNVC---YICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKI 256
I DG + C VC Y+C T+ L RH IH+ K + C C K F + +H
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTS---LRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH 72
Query: 257 HEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
H G +RY C C K F ++ H+++ P
Sbjct: 73 HTGERRYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 33/82 (40%)
Query: 144 IHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
I DG ++C VC +++ RH H K + C C + F H H G
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG 75
Query: 204 IRPFQCNVCYICFTNKSDLNRH 225
R +QC C F N ++ H
Sbjct: 76 ERRYQCLACGKSFINYQFMSSH 97
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%)
Query: 256 IHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTN 315
I +G Y+C +C + + L RH H K + C C + F H HT
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG 75
Query: 316 SKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+ + C C +SF + H+K H +P
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 123 FRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
+ C C+ + RH IH K + C C K F +H H G + +QC
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 183 VCSESFTQRSNLNIHLR 199
C +SF ++ H++
Sbjct: 83 ACGKSFINYQFMSSHIK 99
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%)
Query: 174 EGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIK 233
+G + C VC S+ ++L H IH + + C C F +H H G +
Sbjct: 18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 234 PFLCSMCAKCFSRKDDLNRHMK 255
+ C C K F ++ H+K
Sbjct: 78 RYQCLACGKSFINYQFMSSHIK 99
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
+ C C +++V L RH HS K + C C F + +H H G + + C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 155 VCSKTFTDKVKFNRHMRAHEGIKP 178
C K+F + + H+++ P
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQDP 106
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQC--SVCSESFTQRSNLNIHLRIHDGI 204
K ++CS C + K H+ H G KPF C C + FT +L H H G
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 205 RPFQCNV--CYICFTNKSDLNRH-SRIHN 230
+ F C+ C + FT K+++ +H +R HN
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFNRFHN 90
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQC--NVCYICFTNKSDLNRHSRIHNGI 232
K + CS C ++ + L HL H G +PF C C FT+ L RHS H G
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 233 KPFLCSM--CAKCFSRKDDLNRHM 254
K F C C F+ K ++ +H
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHF 85
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 98 SQCPKTFVDKWHLNRHLKSHSENKVFRC--EQCRFDFYVKREYNRHMKIHDGVKVFLCSV 155
+ C + W L HL H+ K F C E C F RH H G K F C
Sbjct: 9 ADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS 68
Query: 156 --CSKTFTDKVKFNRHMRAHEGIK 177
C FT K +H IK
Sbjct: 69 DGCDLRFTTKANMKKHFNRFHNIK 92
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLC--TMCPKCFTRKDDLNRHMRNHDGL 288
K ++CS C +++ L H+ H G K + C C K FT L RH H G
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 289 KPFHCSV--CFESFTQKALLNIHL-RIH 313
K F C C FT KA + H R H
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFNRFH 89
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 317 KPHACSI--CTESFSQKSNLYIHLKLQHGVNPFKC--DVCPNETFEKETQLSLHMRTVHG 372
K + CS C ++++ L HL G PF C + C + F L+ H T G
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCE-KGFTSLHHLTRHSLTHTG 60
Query: 373 VKPFKCSM--CDEGFPKKSVLKEHLRVSHNV 401
K F C CD F K+ +K+H HN+
Sbjct: 61 EKNFTCDSDGCDLRFTTKANMKKHFNRFHNI 91
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 374 KPFKCSMCDEG--FPKKSVLKEHLRVSHNVNPFKC--DICFKLFTKKSNLRTHIKTH--- 426
K + CS D G + K L+ HL PF C + C K FT +L H TH
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 427 EPIPCDK--CPEIFEKKTDLQEHVDKCHNL 454
+ CD C F K ++++H ++ HN+
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFNRFHNI 91
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 226 SRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSK----RYLCTMCPKCFTRKDDLNRH 281
R H G KP+ CS C K F +K L+ H K + ++C+ C K FTR++ + RH
Sbjct: 7 GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Query: 282 MRN 284
N
Sbjct: 67 ADN 69
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 368 RTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVN----PFKCDICFKLFTKKSNLRTHI 423
RT G KP+ CS CD+ F +K +L H + H+ N F C C K FT+++ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 283 RNHDGLKPFHCSVCFESFTQKALLNIHLRIH--TNSKPHA--CSICTESFSQKSNLYIH 337
R H G KP+ CS C ++F QK LL++H + + N P A CS C ++F++++ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 311 RIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVN----PFKCDVCPNETFEKETQLSLH 366
R HT KP+ACS C ++F QK L +H K H N F C C +TF + ++ H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKC-GKTFTRRNTMARH 66
Query: 367 MRTVHG 372
G
Sbjct: 67 ADNCAG 72
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 171 RAHEGIKPFQCSVCSESFTQRSNLNIHL-RIHDG---IRPFQCNVCYICFTNKSDLNRHS 226
R H G KP+ CS C ++F Q+ L++H R HD F C+ C FT ++ + RH+
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 143 KIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIK----PFQCSVCSESFTQRSNLNIH 197
+ H G K + CS C KTF K + H + + F CS C ++FT+R+ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 115 KSHSENKVFRCEQCRFDFYVKREYNRHMK-IHDG---VKVFLCSVCSKTFTDKVKFNRH 169
++H+ K + C C F K+ + H K HD F+CS C KTFT + RH
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 283 RNHDGLKPFHCSVCFESFTQKALLNIH-LRIHT-NSKPHACSICTESFSQKSNLYIHLKL 340
R H G KP+ C +C FTQ + +H L+ HT N C C ++KS+L +HL+
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 341 QH 342
QH
Sbjct: 68 QH 69
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 171 RAHEGIKPFQCSVCSESFTQRSNLNIH-LRIH-DGIRPFQCNVCYICFTNKSDLNRHSR 227
R H G KP++C +C FTQ + +H L+ H + + F C C KSDL H R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 368 RTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSH--NVNPFKCDICFKLFTKKSNLRTHIK 424
RT G KP++C +C F + +K H+ H NV F C C + +KS+L H++
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 226 SRIHNGIKPFLCSMCAKCFSRKDDLNRHM--KIHEGSKRYLCTMCPKCFTRKDDLNRHMR 283
R H+G KP+ C +C F++ + H+ K E ++ C C RK DL H+R
Sbjct: 7 GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 311 RIHTNSKPHACSICTESFSQKSNLYIHLKLQH--GVNPFKCDVCPNETFEKETQLSLHMR 368
R H+ KP+ C IC F+Q + +H+ +H V F C C + +++ L +H+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHC-DTVIARKSDLGVHLR 66
Query: 369 TVH 371
H
Sbjct: 67 KQH 69
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 143 KIHDGVKVFLCSVCSKTFTDKVKFNRHM--RAHEGIKPFQCSVCSESFTQRSNLNIHLR 199
+ H G K + C +C FT H+ + E + F C C ++S+L +HLR
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 25/30 (83%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++CS+C +SFT++S L++H +IH G +P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ CS+C +SFT+K+ L++H +IHT KP S
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C++C FT KS L+ H +IH G KP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ CS+C K F++K L+ H +IH G K
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ CSIC +SF++KS L++H ++ G P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C++C K FT+K L+ H + H G KP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + CS+C K+FT K + + H + H G KP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++C IC K FTKKS L H + H
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIH 35
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++CSVC ++F+ R +L++H RIH G +P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ CSVC ++F+ + L++H RIH+ KP S
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C+VC F+++ L+ H RIH+G KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ CS+C K FS + L+ H +IH G K
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C++C K F+ + L+ H R H G KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ CS+C ++FS + +L +H ++ G P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + CSVC K F+ + + H R H G KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 310 LRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRT 369
L + +++ H C +C ESF+ K HL+L H F C CP TF L+ H+
Sbjct: 20 LGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCP-ATFYSSPGLTRHINK 78
Query: 370 VH 371
H
Sbjct: 79 CH 80
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 236 LCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHM 282
LC +C + F+ K RH+++ ++ + C CP F L RH+
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 20/51 (39%)
Query: 378 CSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTHEP 428
C +C E F K + HLR+ H F C C F L HI P
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHP 81
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 181 CSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRH 225
C VC ESF + HLR+ + F C C F + L RH
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 152 LCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHL 198
LC VC ++F K RH+R + F C C +F L H+
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 125 CEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHM 170
C C F K RH+++ +VF C C TF RH+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 97 CSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHM 142
C C ++F K RHL+ +VF C+ C FY RH+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 59 CNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL-KSH 117
C +C + +A K HLR A F C CP TF L RH+ K H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQV----------FPCKYCPATFYSSPGLTRHINKCH 80
Query: 118 -SENK 121
SEN+
Sbjct: 81 PSENR 85
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 209 CNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHM-KIHEGSKR 262
C VC F +K RH R+ + + F C C F L RH+ K H R
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSENR 85
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 293 CSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHL 338
C VC ESF K HLR+ ++ C C +F L H+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 348 KCDVCP--NETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSH 399
+C +CP E+F + H+R +H + F C C F L H+ H
Sbjct: 27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 212 CYICFTNKSDLNRHSRIHNGIKPFLCSM--CAKCFSRKDDLNRHMKIH 257
C + S L H+R H G KPF CS C + F+R D+L+RH + H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 232 IKPFLCS--MCAKCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNRHMRNH 285
I+ +CS C K + + L H + H G K + C+ C + F R D+L+RH R H
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 162 DKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNV--CYICFTNK 219
D + H+ +H G C +++ + S+L H R H G +PF C+ C F
Sbjct: 11 DSSRIRSHICSHPG--------CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 220 SDLNRHSRIH 229
+L+RH R H
Sbjct: 63 DELSRHRRTH 72
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 148 VKVFLCS--VCSKTFTDKVKFNRHMRAHEGIKPFQCSV--CSESFTQRSNLNIHLRIH 201
++ +CS C KT+ H R H G KPF CS C F + L+ H R H
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 268 CPKCFTRKDDLNRHMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIH 313
C K + + L H R H G KPF CS C F + L+ H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 354 NETFEKETQLSLHMRTVHGVKPFKCSM--CDEGFPKKSVLKEHLRV 397
+T+ K + L H RT G KPF CS C+ F + L H R
Sbjct: 26 GKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRC--EQCRFDFYVKREYNRHMKIH 145
C KT+ HL H ++H+ K F C + C F E +RH + H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 381 CDEGFPKKSVLKEHLRVSHNVNPFKCDI--CFKLFTKKSNLRTHIKTH 426
C + + K S LK H R PF C C + F + L H +TH
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
G KP+QC C +SF+QR +L +H R+H G P
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 287 GLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
G KP+ C C +SF+Q+ L +H R+HT S P +
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 314 TNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+ KP+ C C +SFSQ+ +L +H +L G P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 32.3 bits (72), Expect = 0.73, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEGS 260
+G KP+ C C K FS++ L H ++H GS
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGS 36
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 203 GIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
G +P+QC C F+ + L H R+H G P
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPF+C C +SF QRS LN H IH G +P
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KPF C C +SF Q++ LN H IHT KP S
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKPSGPS 44
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+PF+C+ C F +S LN H IH G KP
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C C K F ++ LN H IH G K
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 287 GLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
G+KP+ CS C ++F K+ L IH+R HT KP S
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEKPSGPS 42
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
G+KP+ CS C ++F +S L IH+R H G +P
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 35.4 bits (80), Expect = 0.098, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+G+KP+ CS C K F K L HM+ H G K
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 17/32 (53%)
Query: 147 GVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
GVK + CS C K F K HMR H G KP
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 32.3 bits (72), Expect = 0.73, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 17/32 (53%)
Query: 259 GSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
G K Y C+ C K F K L HMR H G KP
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 32.3 bits (72), Expect = 0.89, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ CS C ++F KS L IH++ G P
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 203 GIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
G++P+ C+ C F +KS L H R H G KP
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 372 GVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNP 403
GVKP+ CS C + F KS L H+R P
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 398 SHNVNPFKCDICFKLFTKKSNLRTHIKTH 426
S V P+ C C K F KS L H++TH
Sbjct: 5 SSGVKPYGCSECGKAFRSKSYLIIHMRTH 33
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPFQC C + FTQ S+L+ H R+H G +P
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KPF C C + FTQ + L+ H R+HT KP S
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+PFQC C FT S L+ H R+H G KP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C C K F++ L+ H ++H G K
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K F C C K FT + H R H G KP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PF+C+ C K FT+ S+L +H + H
Sbjct: 12 PFQCEECGKRFTQNSHLHSHQRVH 35
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C VCS++FTQ+++L H + H G +P
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C VC ++FTQKA L H + HT KP S
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C VC FT K+ L +H + H G KP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + C VCSK FT K +H + H G KP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C +C K FT+K L +H + H G KP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C +C+K F++K L +H K H G K
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++C +C K FT+K++L H KTH
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTH 35
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ C +C+++F+QK++L H K G P
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+QCN C F+ S L RH R+H G KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP+QC+ C ++F+Q S L H R+H G +P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C ++F+Q + L H R+HT KP S
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K FS+ L RH ++H G K
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + C+ C K F+ K RH R H G KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C C K F++ L RH R H G KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C ++FT RSNL H +IH G +P
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C ++FT ++ L H +IHT KP S
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C C FT++S+L H +IH G KP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K F+ + +L H KIH G K
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ C+ C ++F+ +SNL+ H K+ G P
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++C C K FT +SNL TH K H
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIH 35
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + C+ C K FTD+ H + H G KP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 262 RYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSK 317
+Y+C C + L +H+R H ++P+HC+ C SF K L H++ +SK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 293 CSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLK 339
C C + ++L H+R HT+ +P+ C+ C SF K NL H+K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
+ C C I S L +H R H ++P+ C+ C F K +L +HMK SK+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 151 FLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLR 199
++C C +H+R H ++P+ C+ C+ SF + NL H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 179 FQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSR 227
+ C C + S L H+R H +RP+ C C F K +L +H +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 376 FKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKT 425
+ C C K S+LK+H+R +V P+ C C F K NL H+K+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMK 143
+ C +C L +H+++H++ + + C C F F K +HMK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 235 FLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRN 284
++C C + L +H++ H + Y CT C F K +L +HM++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 358 EKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLR 396
+K + L H+RT V+P+ C+ C+ F K L +H++
Sbjct: 12 KKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 123 FRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRA 172
+ CE+C +H++ H V+ + C+ C+ +F K +HM++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C ++F+QK++L+ H R HT KP S
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP+ C+ C ++F+Q+S L+ H R H G +P
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ CN C F+ KS L+ H R H G KP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K FS+K L+ H + H G K
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C C K F++K L+ H R H G KP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + C+ C KTF+ K + H R H G KP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ C+ C ++FSQKS L H + G P
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++CS C +SF ++S L++H RIH G P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ CS C +SF +K+ L++H RIHT P S
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ CS C +SF +KS L++H ++ G NP
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C+ C F KS L+ H RIH G P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEG 259
KP+ CS C K F +K L+ H +IH G
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTG 37
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 374 KPFKCSMCDEGFPKKSVLKEHLRVSHNVNP 403
KP++CS C + F KKS L H R+ NP
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPF+CS C ++F +SNL +H R H G +P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KPF CS C ++F K+ L +H R HT KP S
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+PF+C+ C F KS+L H R H G KP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF CS C K F+ K +L H + H G K
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEK 39
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP CS C ++F+ KSNL +H + G P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PF+C C K F KSNL H +TH
Sbjct: 12 PFECSECQKAFNTKSNLIVHQRTH 35
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K + C+ C K F K +L H R H G KP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K F CS C K F K H R H G KP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPF+C C + F++RS LN+H ++H G +P
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KPF C C + F++++ LN+H ++HT KP S
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C C K FSR+ LN H K+H G K
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEK 39
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+PF+C C F+ +S LN H ++H G KP
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K + C C K F+R+ LN H + H G KP
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++CS C ++F + ++LN H RIH G RP
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEG 259
KP+ CS C K F R LN H +IH G
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTG 37
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ CS C ++F + LN H RIHT +P S
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C+ C F + LN H RIH G +P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C+ C K F R LN H R H G +P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + CS C K F N H R H G +P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 374 KPFKCSMCDEGFPKKSVLKEHLRVSHNVNP 403
KP+KCS C + F + + L EH R+ P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C + FTQ S+L H RIH G++P
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C FT S L H RIH G+KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C + FTQ + L H RIHT KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C C K FT+ L H R H G+KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K F++ L H +IH G K
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + C+ C K FT H R H G+KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTHEPI 429
P+KC+ C K+FT+ S+L H + H +
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIHTGV 38
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C +SF QK+ LN H RIHT KP S
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ CN C F KS LNRH RIH G KP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP+ C+ C +SF Q+S+LN H RIH G +P
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP++C+ C K F +K LNRH +IH G K
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y+C C K F +K LNRH R H G KP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K ++C+ C K+F K NRH R H G KP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENK 121
+ C++C K+F+ K HLNRH + H+ K
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEK 39
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+P+ C+VC ++FT RSNL H +IH G +P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
RP+ C VC FT++S+L +H +IH G KP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+P++C++C K F+ + +L +H KIH G K
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
+ ++C+VC K FTD+ +H + H G KP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+P+ C+VC ++FT ++ L H +IHT KP S
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+ Y+CT+C K FT + +L +H + H G KP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C++C ++F+ +SNL H K+ G P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+ C +C K FT +SNL H K H
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIH 35
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C F+ S L RH RIH G KP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C ++F+Q S L H RIH G +P
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C ++F+Q + L H RIHT KP S
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K FS+ L RH +IH G K
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + C+ C K F+ K RH R H G KP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C C K F++ L RH R H G KP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPF+C C + FTQ S L+ H R+H G +P
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KPF C C + FTQ + L+ H R+HT KP S
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+PF+C C FT S L+ H R+H G KP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C C K F++ L+ H ++H G K
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PFKC+ C K FT+ S L +H + H
Sbjct: 12 PFKCEECGKRFTQNSQLHSHQRVH 35
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K F C C K FT + + H R H G KP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ CS C ++F+ K+ L IH+R H+ KP S
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP+ CS C ++F+ +S L IH+R H G +P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ CS C K FS K L HM+ H G K
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ CS C ++FS KS L IH++ G P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C+ C K F+ K L HMR H G KP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + CS C K F+ K HMR H G KP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C+ C F++KS L H R H+G KP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C + FTQ S+L H RIH G +P
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C + FTQ + L H RIHT KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C FT S L H RIH G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K F++ L H +IH G K
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C C K FT+ L H R H G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC+ C K+FT+ S+L H + H
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIH 35
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEA 81
K +KCN C K + + + LTNH R H
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTG 37
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C VC +SF S+L +H RIH G +P
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C VC +SF + L +H RIHT KP S
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C+VC+ F S L H RIH G KP
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 346 PFKCDVCPNETFEKETQLSLHMRTVHGVKP 375
P+KCDVC +++F + L++H R G KP
Sbjct: 12 PYKCDVC-HKSFRYGSSLTVHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C +C K F L H +IH G K
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KCD+C K F S+L H + H
Sbjct: 12 PYKCDVCHKSFRYGSSLTVHQRIH 35
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
KP+ C C ++F+QK L +H+R+HT S P +
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C C ++F+Q+ +L +H+R+H G P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGS 260
KP+ C C K FS+K L H+++H GS
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ C C ++FSQK +L +H+++ G P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++CD C K F++K +L HI+ H
Sbjct: 11 PYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C+ C F+ K L H R+H G P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 303 KALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHG 343
KA L IH RIH +P C+ C+ Q SNL H+K HG
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 191 RSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNG 231
++ L IH RIH RPF+CN C S+L++H + +G
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 331 KSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHG 372
K+ L IH ++ PFKC+ C +T ++ + LS HM+ HG
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDT-KQPSNLSKHMKKFHG 62
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C C ++F Q++NL H RIH G +P
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.050, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C C ++F QKA L H RIHT KP S
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C C K F++K +L +H +IH G K
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C C F K++L +H RIH G KP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C C K F +K +L +H R H G KP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ C C ++F+QK+NL H ++ G P
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + C C K F K +H R H G KP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 178 PFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
PF CS C + FT ++NL IH +IH G RP
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 234 PFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
PF+CS C K F+ K +L H KIH G +
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 290 PFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
PF CS C + FT K L IH +IHT +P S
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 402 NPFKCDICFKLFTKKSNLRTHIKTH 426
NPF C C K+FT K+NL H K H
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIH 35
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 206 PFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
PF C+ C FT+K++L H +IH G +P
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 151 FLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
F+CS C K FT K H + H G +P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 318 PHACSICTESFSQKSNLYIHLKLQHGVNP 346
P CS C + F+ K+NL IH K+ G P
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
K F+C+ C ++FTQ S+L +H RIH G +P
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
K F C+ C ++FTQ + L +H RIHT KP S
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIHNGIKP 234
F+CN C FT S L H RIH G KP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K+F C+ C KTFT H R H G KP
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C FT S L RH R+H G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C + FTQ S+L H R+H G +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C + FTQ + L H R+HT KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K F++ L RH ++H G K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C C K FT+ L RH R H G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + C+ C K FT RH R H G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC+ C K+FT+ S+L H + H
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVH 35
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 369 TVHGVKPFKCSMCDEGFPKKSVLKEHLRVSH--NVNPFKCDICFKLFTKKSNLRTHIK 424
T G ++C +C + S H SH NV + C CFK FT+K N+ H+K
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 146 DGVKVFLCSVCSKTFTDKVKFNRH-MRAHE-GIKPFQCSVCSESFTQRSNLNIHLRI 200
+G + C VCS+ +T F RH + +H+ +K + C C + FT++ N+ H++I
Sbjct: 6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 202 DGIRPFQCNVCYICFTNKSDLNRH--SRIHNGIKPFLCSMCAKCFSRKDDLNRHMKI 256
+G ++C VC +T+ S+ RH + +K + C C K F+RKD++ H+KI
Sbjct: 6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 258 EGSKRYLCTMCPKCFTRKDDLNRHM--RNHDGLKPFHCSVCFESFTQKALLNIHLRI 312
EG Y C +C + +T + RH + +K + C CF+ FT+K + H++I
Sbjct: 6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 231 GIKPFLCSMCAKCFSRKDDLNRHMKIH--EGSKRYLCTMCPKCFTRKDDLNRHMR 283
G + C +C++ ++ + RH K Y C C K FTRKD++ H++
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 286 DGLKPFHCSVCFESFTQ-----KALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKL 340
+G + C VC +T + + H R N K + C C + F++K N+ H+K+
Sbjct: 6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKR---NVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 341 QHGV 344
H +
Sbjct: 63 IHKI 66
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPF+C C +S+ QR +L H R+H G +P
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KPF C C +S+ Q+ L H R+HT KP S
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K F C C K++ +V +H R H G KP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C C K ++++ L +H ++H G K
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+PF+C C + + L +H R+H G KP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 176 IKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+KP+ CS C+++F+ +S L +H R H G++P
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 148 VKVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
VK + CS C+KTF+ K + H R+H G+KP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ CS C ++FS KS L +H + GV P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 288 LKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+KP+ CS C ++F+ K+ L +H R HT KP S
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 232 IKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+KP+ CS CAK FS K L H + H G K
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVK 39
Score = 32.0 bits (71), Expect = 1.00, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 204 IRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
++P+ C+ C F+ KS L H R H G+KP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C+ C K F+ K L H R+H G+KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 344 VNPFKCDVCPNETFEKETQLSLHMRTVHGVKP 375
V P+ C C +TF ++QL +H R+ GVKP
Sbjct: 10 VKPYGCSQCA-KTFSLKSQLIVHQRSHTGVKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C+VC F++ + L +H R+H+G KP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C VC ++F+ ++L H R+H G +P
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C VC ++F+ A L H R+H+ KP S
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C +C K FS L +H ++H G K
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + C VC K F+ +H R H G KP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C +C K F+ L +H R H G KP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 172 AHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
G KP+ C+ C ++FT +S L +H +H G++P
Sbjct: 4 GSSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 202 DGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
G +P+ CN C FT KS L H +H G+KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 284 NHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
G KP+ C+ C ++FT K+ L +H +HT KP S
Sbjct: 4 GSSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKPSGPS 42
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 258 EGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
G K Y C C K FT K L H H G+KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 314 TNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+ KP++C+ C ++F+ KS L +H + GV P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 226 SRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
S +G KP+ C+ C K F+ K L H +H G K
Sbjct: 2 SSGSSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+PF+C++C F +S LNRHS +H KP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPF+C +C +SF RS LN H +H +P
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KPF C +C +SF ++ LN H +HT KP S
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C +C K F + LNRH +H K
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEK 39
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K F C +C K+F + + NRH H KP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PFKCDIC K F +S L H H
Sbjct: 12 PFKCDICGKSFCGRSRLNRHSMVH 35
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIR 205
KP++CS C ++FT++S L+IH + H G R
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSK 317
KP+ CS C ++FT+K+ L+IH + HT +
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ CS C K F+RK L+ H + H G +
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC C K FT+KS L H ++H
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDG 287
K Y C+ C K FTRK L+ H ++H G
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHG 343
KP+ CS C ++F++KS L+IH + G
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTG 37
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIR 205
KP++CS C +SFT +S L IH + H G R
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSK 317
KP+ CS C +SFT K+ L IH + HT +
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC C K FT KS LR H K H
Sbjct: 12 PYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHG 343
KP+ CS C +SF+ KS L IH K G
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTG 37
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ CS C K F+ K L H K H G +
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPF+C C ++F Q +L HLRIH G +P
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KPF C C ++F Q L HLRIHT KP S
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C C K F + L H++IH G K
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+PF+C C F L H RIH G KP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 35.8 bits (81), Expect = 0.065, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
G KP+ C C ++FTQ S L+IH R+H G
Sbjct: 7 GEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 287 GLKPFHCSVCFESFTQKALLNIHLRIHT 314
G KP+ C C ++FTQ + L+IH R+HT
Sbjct: 7 GEKPYVCQECGKAFTQSSCLSIHRRVHT 34
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEG 259
+G KP++C C K F++ L+ H ++H G
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 179 FQCSVCSESFTQRSNLNIHLRIHDGIRP 206
++CS C ++F Q+S L++H RIH G +P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ CS C ++F QK+ L++H RIH KP S
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
R ++C+ C F KS L+ H RIH G KP
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+ Y C+ C K F +K L+ H R H G KP
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 235 FLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+ CS C K F +K L+ H +IH G K
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEK 39
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 151 FLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
+ CS C K F K + H R H G KP
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
K F+C+ C ++FT++S L++H +IH G +P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
K F C+ C ++FT+K+ L++H +IHT KP S
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K + CT C K FTRK L+ H + H G KP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
K F C+ C K F+RK L+ H KIH G K
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIHNGIKP 234
F+C C FT KS L+ H +IH G KP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K F C+ C K FT K + H + H G KP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.076, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPF+C+ C +SF+ S L H RIH G +P
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KPF C+ C +SF+ + L H RIHT KP S
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C+ C K FS L H +IH G K
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEK 39
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+PF+C C F+ S L H RIH G KP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C ++F+ RS+L H IH G +P
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C F+ +S L H IH G KP
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K FS + L H IH G K
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C ++F+ ++ L H IHT KP S
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C F + S L+RH RIH G KP
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K F L+RH +IH G K
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C + F + L+ H RIHT KP S
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C + F S L+ H RIH G +P
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C C + + + NL++H ++H G RP
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C C + + K L++H ++HT +P S
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C C K ++ K +L+ H K+H G +
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMK-IHEGSKRYLCTM 267
KP++C C K FSR D LN H+K +H + + C +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 289 KPFHCSVCFESFTQKALLNIHLR-IHTNSKPHACSICTESFS 329
KP+ C C + F++ LN H++ +HT+ +PH C + S
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 260 SKRYLCTMCPKCFTRKDDLNRHMRN-HDGLKPFHCSV 295
K Y+C C K F+R D LN H++ H +P C V
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLR-IHDGIRPFQCNV 211
KP+ C C + F++ +LN H++ +H RP +C V
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 233 KPFLC--SMCAKCFSRKDDLNRHMKIHEGSK 261
+PF+C S C K F+R D+L RH + H G K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLK 289
++CT C K FTR D+L RH R H G K
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 205 RPFQCNVCYIC--FTNKSDLNRHSRIHNGIK 233
RPF C Y FT +L RH R H G K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C FT S L RH IH G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C + FTQ S+L H IH G +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K F++ L RH IH G K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C + FTQ + L H IHT KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C C K FT+ L RH H G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C FT S L RH IH G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C + FTQ S+L H IH G +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C + FTQ + L H IHT KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K F++ L RH IH G K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
KPF+C+ C +SF + NL H RIH G
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C+ C K F K +L H +IH G K
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSK 317
KPF C+ C +SF K L H RIHT K
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIK 233
+PF+C C F K +L H RIH G K
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C ++F RS+L IH H G +P
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C F +S L H H+G KP
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C ++F ++ L IH H+ KP S
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 287 GLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
G + + C C +SF QK L +H RIHT S P +
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
G + ++C C +SF Q+ +L +H RIH G P
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 203 GIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
G R ++C C F K L H RIH G P
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 179 FQCSVCSESFTQRSNLNIHLRIHDGIRP 206
++C VC + F+Q S+L H R+H G +P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSKP 318
+ C VC + F+Q + L H R+HT KP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 404 FKCDICFKLFTKKSNLRTHIKTH 426
+KCD+C K F++ S+L+TH + H
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVH 35
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIHNGIKP 234
++C+VC F+ S L H R+H G KP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + C VC K F+ H R H G KP
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|3HDJ|A Chain A, The Crystal Structure Of Probable Ornithine Cyclodeaminase
From Bordetella Pertussis Tohama I
pdb|3HDJ|B Chain B, The Crystal Structure Of Probable Ornithine Cyclodeaminase
From Bordetella Pertussis Tohama I
Length = 313
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 518 DILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELD 557
DI+VTAT S+ P+ + L+ A + A+G+ L H ELD
Sbjct: 185 DIVVTATRSTTPLFAGQALRAG-AFVGAIGSSLPHTRELD 223
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHT 314
KP+ C+VC ++F A LN HLR+HT
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIH 201
KP+ C+VC ++F ++LN HLR+H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIH 257
KP+ C++C K F LN+H+++H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIH 229
+P+ CNVC F + LN+H R+H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKV 122
++C+ C K FV HLN+HL+ H++ +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETL 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEG 259
+G P+ CS C K F+RKD L H + H G
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAG 35
Score = 32.0 bits (71), Expect = 0.99, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 259 GSKRYLCTMCPKCFTRKDDLNRHMRNHDG 287
G Y C+ C K F RKD L H R H G
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTHAG 35
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 398 SHNVNPFKCDICFKLFTKKSNLRTHIKTH 426
S NP++C C K F +K L +H +TH
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
G P++CS C ++F ++ L H R H G
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTHAG 35
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KPF C C ++F+ LN H RIHT KP S
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPF C C ++F+ LN H RIH G +P
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K F C C K F+D + N+H R H G KP
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+PF C C F++ LN+H RIH G KP
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C C K FS LN+H +IH G K
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGI 204
G KP+ CS C ++FT +S L +H IH G+
Sbjct: 7 GEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEG 259
+G KP++CS C K F+ K L H IH G
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 287 GLKPFHCSVCFESFTQKALLNIHLRIHT 314
G KP+ CS C ++FT K+ L +H IHT
Sbjct: 7 GEKPYVCSDCGKAFTFKSQLIVHQGIHT 34
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 314 TNSKPHACSICTESFSQKSNLYIHLKLQHGVN 345
+ KP+ CS C ++F+ KS L +H + GV+
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVS 37
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 203 GIRPFQCNVCYICFTNKSDLNRHSRIHNGI 232
G +P+ C+ C FT KS L H IH G+
Sbjct: 7 GEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 208 QCNVCYICFTNKSDLNRHSRIHNGIKP 234
QC+ C FT KS LN+H RIH G KP
Sbjct: 14 QCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 176 IKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
K QC C FT +S+LN H RIH G +P
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
K C C FT K+ LN H RIHT KP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 260 SKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+K + C C + FT K LN+H R H G KP
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 148 VKVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K C C + FT K N+H R H G KP
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 232 IKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
K C C + F+ K LN+H +IH G K
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEK 39
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
KP++C CS + ++NLN+HLR H G
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTG 34
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSK 317
KP+ C C + KA LN+HLR HT K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 116 SHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVK 149
S S K ++C QC + +K N H++ H G K
Sbjct: 3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C FT S L RH IH G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C + FTQ S+L H IH G +P
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K F++ L RH IH G K
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEK 39
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C + FTQ + L H IHT KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C C ++F+Q ++L H R+H G +P
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C C ++F+Q L H R+HT KP S
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C C F+ + L +H R+H G KP
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C C K FS+ L +H ++H G K
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
KP++C+ C ++F +SNL +H R H G
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNG 231
+P++CN C F KS+L H R H G
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++C+ C K F KSNL H +TH
Sbjct: 12 PYECNECQKAFNTKSNLMVHQRTH 35
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHT 314
KP+ C+ C ++F K+ L +H R HT
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHT 36
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
KP QC +C ++FTQ S+L H+R H G
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTG 27
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSK 317
KP C +C ++FTQ + L H+R HT K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 265 CTMCPKCFTRKDDLNRHMRNHDGLK 289
C MC K FT+ L H+R H G K
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP C MC K F++ L H++ H G K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
KRY C C K F+R L++H + H G KP
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
K + C+ C K FSR L++H KIH G K
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIHNGIKP 234
++CN C F+ S L++H +IH G KP
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
K ++C+ C + F++ S L+ H +IH G +P
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 171 RAHEGIKPFQCSVCSESFTQRSNLNIHLRIH 201
R GIKPFQC C SF++ +L +H + H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 226 SRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIH 257
+R GIKPF C C + FSR D L H K H
Sbjct: 3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 288 LKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ P+ CS C +SF+ K L +H R+HT KP S
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 176 IKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ P++CS C +SF+ + L +H R+H +P
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP++C C K F +L RH +IH G K
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C+ C F ++L RH RIH G KP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C C ++F A L H RIHT KP S
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y+C C K F +L RH R H G KP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 6.2, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP+ C C ++F + L H RIH G +P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K ++C C K F + RH R H G KP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 232 IKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+KP++C+ C K FS L H IH G K
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 176 IKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+KP+ C+ C ++F+ S+L H IH G +P
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 204 IRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
++P+ CN C F+ S L H IH G KP
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 288 LKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+KP+ C+ C ++F+ + L H IHT KP S
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 287 GLKPFHCSVCFESFTQKALLNIHLRIHTNSK 317
G KP+ C+ C + F+ K+ L +H RIHT K
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
G KP+ C+ C + F+ +S L +H RIH G
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIHTG 35
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+G KP+ C+ C K FS K L H +IH G K
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 203 GIRPFQCNVCYICFTNKSDLNRHSRIHNGIK 233
G +P+ CN C F++KS L H RIH G K
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 314 TNSKPHACSICTESFSQKSNLYIHLKLQHG 343
+ KP+ C+ C + FS KS L +H ++ G
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTG 35
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 287 GLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
G KPF CS C ++F+ K+ L +H + H KP S
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
G KPF CS C ++F+ +S L +H + H +P
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+G KPF CS C K FS K L H + H K
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 381 CDEGFPKKSVLKEHLRVSHNVNPFKC--DICFKLFTKKSNLRTHIKTHEPIPC---DKCP 435
C + F K + LK H P++C + C K F+ S L+ H K H PC D C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 436 EIFEKKTDLQEHVDKCHN 453
+ + T +HV +CH
Sbjct: 69 FVGKTWTLYLKHVAECHQ 86
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 184 CSESFTQRSNLNIHLRIHDGIRPFQC--NVCYICFTNKSDLNRHSRIHNG 231
C ++F + + L +H H P++C C F+ S L RH ++H G
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 259 GSKRYLCTMCPKCFTRKDDLNRHMRNHDG 287
G K Y C +C F RKD ++ H+R+HDG
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEGS 260
+G KP+ C +C F RKD ++ H++ H+GS
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
G KP+ C VC F ++ ++ H+R HDG
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEA 81
K + C +C R+ RK+R++ H+R+H+
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 381 CDEGFPKKSVLKEHLRVSHNVNPFKC--DICFKLFTKKSNLRTHIKTHEPIPC---DKCP 435
C + F K + LK H P++C + C K F+ S L+ H K H PC D C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 436 EIFEKKTDLQEHVDKCH 452
+ + T +HV +CH
Sbjct: 69 FVGKTWTLYLKHVAECH 85
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 184 CSESFTQRSNLNIHLRIHDGIRPFQC--NVCYICFTNKSDLNRHSRIHNG 231
C ++F + + L +H H P++C C F+ S L RH ++H G
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 212 CYICFTNKSDLNRHSRI-HNGIKPFLCS--MCAKCFSRKDDLNRHMKIHEGSKRYLC 265
C F+N+ LN H + H K F C C K F+ K L HMK+H ++ Y+C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 100 CPKTFVDKWHLNRHLK-SHSENKVFRCEQ--CRFDFYVKREYNRHMKIHDGVKVFLC 153
C + F ++ +LN H K H K F C + C F K+ HMK+H + ++C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 172 AHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
G KP C+ C ++F Q S L+ H RIH G +P
Sbjct: 4 GSSGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 202 DGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
G +P CN C F S L++H RIH+G KP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 286 DGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
G KP C+ C ++F Q + L+ H RIH+ KP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKPSG 40
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+G KP +C+ C K F + L++H +IH G K
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEK 37
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 146 DGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
G K +C+ C KTF ++H R H G KP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHD 202
+PF+C+ C + F +RS+L HLR+H
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 374 KPFKCSMCDEGFPKKSVLKEHLRV 397
+PFKC+ C +GF ++S L HLR+
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRL 34
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
+ FKCN C K + R++ L HLR H
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSK 317
+PF C+ C + F +++ L HLR+H+ K
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PFKC+ C K F ++S+L H++ H
Sbjct: 12 PFKCNECGKGFGRRSHLAGHLRLH 35
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIH 257
+PF C+ C K F R+ L H+++H
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHN 230
RPF+CN C F +S L H R+H+
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHS 36
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 286 DGLKPFHCSVCFESFTQKALLNIHLRIHTNS 316
G +PF C +C +FT KA HL++HT++
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 202 DGIRPFQCNVCYICFTNKSDLNRHSRIHN 230
G RPF C +C FT K++ RH ++H
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIH 257
+G +PF+C +C F+ K + RH+K+H
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 174 EGIKPFQCSVCSESFTQRSNLNIHLRIH 201
G +PF C +C +FT ++N HL++H
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 398 SHNVNPFKCDICFKLFTKKSNLRTHIKTH 426
S PF C IC FT K+N H+K H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C ++F SNL H IH G +P
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C F S+L H IH G KP
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K F +L H IH G K
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C ++F + L H IHT KP S
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ CS C ++F +K+ L +H RIHT KP S
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 179 FQCSVCSESFTQRSNLNIHLRIHDGIRP 206
++CS C ++F ++S L +H RIH G +P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
R ++C+ C F KS L H RIH G KP
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+ Y C+ C K F RK L H R H G KP
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 235 FLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+ CS C K F+RK L H +IH G K
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
KP++C C + + +R NL++H R+H G
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C C K ++R+ +L+ H ++H G K
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C C + FSR D L H + H G K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
KPFQC C F++ +L H R H G
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTG 27
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIK 233
+PFQC C F+ L H+R H G K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSK 317
KPF C C F++ L H R HT K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PF+C C + F++ +L+TH +TH
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTH 25
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 234 PFLCSMCAKCFSRKDDLNRHMKIHEG 259
P+ C C K FSRKD L H K H G
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTHSG 37
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 402 NPFKCDICFKLFTKKSNLRTHIKTH 426
NP++C C K+F++K L +H KTH
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTH 35
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 263 YLCTMCPKCFTRKDDLNRHMRNHDG 287
Y C C K F+RKD L H + H G
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSG 37
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP++C C ++F + L H RIHT KP S
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C C F + S L H RIH G KP
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP+ C C ++F S L H RIH G +P
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C C K F L H +IH G K
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
G KP+ C+ C ++F +S L IH RIH G
Sbjct: 7 GQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEG 259
+G KP++C+ C K F K L H +IH G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 287 GLKPFHCSVCFESFTQKALLNIHLRIHT 314
G KP+ C+ C ++F K+ L IH RIHT
Sbjct: 7 GQKPYVCNECGKAFGLKSQLIIHERIHT 34
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 203 GIRPFQCNVCYICFTNKSDLNRHSRIHNG 231
G +P+ CN C F KS L H RIH G
Sbjct: 7 GQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 314 TNSKPHACSICTESFSQKSNLYIHLKLQHG 343
+ KP+ C+ C ++F KS L IH ++ G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 3)
pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f3, Minimized Average Structure
Length = 29
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHE 80
KKF C CPKR+ R + L+ H++TH+
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQ 26
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENK 121
F C +CPK F+ HL++H+K+H K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLK 289
K++ C CPK F R D L++H++ H K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
K F C C K F R D L++H+K H+ K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
G KP++C+ C ++F +S L IH R H G
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTHTG 35
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 287 GLKPFHCSVCFESFTQKALLNIHLRIHT 314
G KP+ C+ C ++F K+ L IH R HT
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTHT 34
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 259 GSKRYLCTMCPKCFTRKDDLNRHMRNHDG 287
G K Y CT C K F K L H R H G
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTHTG 35
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEG 259
+G KP+ C+ C K F K L H + H G
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTG 35
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
KP++CS C ++F + S L +H R H G
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSG 37
Score = 29.3 bits (64), Expect = 6.4, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEG 259
KP+ CS C K F R L H + H G
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSG 37
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 178 PFQCSVCSESFTQRSNLNIHLRIHDG 203
P +C C + FT NL HLRIH G
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSG 27
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 234 PFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
P C C K F+ +L RH++IH G K
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 206 PFQCNVCYICFTNKSDLNRHSRIHNGIK 233
P +C C FT +L RH RIH+G K
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIR 205
KP++C C ++F Q +LN H R+H G R
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSK 317
KP+ C C ++F Q LN H R+HT +
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Query: 261 KRYLCTMCPKC---FTRKDDLNRHMRNHDGLKP 290
K + CT P C F+R D+L+RH R+H G+KP
Sbjct: 11 KPFACTW-PGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSK 261
KPF C+ C FSR D+L+RH + H G K
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVK 41
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIKP 234
+PF C C F+ +L+RH R H+G+KP
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
KP++C C ++F RSNL H IH G
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
KP+ C C K F + +L H IH G KR
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEKR 40
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 176 IKPFQCSVCSESFTQRSNLNIHLRIHDG 203
++P+ CSVC + F+ + + H R+H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 232 IKPFLCSMCAKCFSRKDDLNRHMKIHEG 259
++P+ CS+C K FS K + H ++H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 288 LKPFHCSVCFESFTQKALLNIHLRIHTN 315
++P+ CSVC + F+ K + H R+HT
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 204 IRPFQCNVCYICFTNKSDLNRHSRIHNG 231
+RP+ C+VC F+ K + H R+H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEG 259
+G KP++C+ C K F RK H +IH G
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 259 GSKRYLCTMCPKCFTRKDDLNRHMRNHDG 287
G K Y+CT C K F RK H R H G
Sbjct: 7 GEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
G KP+ C+ C ++F ++S+ H RIH G
Sbjct: 7 GEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 286 DGLKPFHCSVCFESFTQKALLNIHLRIHTN 315
G KP+ C+ C ++F +K+ H RIHT
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP+ C+ C ++FT RSNL H +IH +P
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIH 257
KP++C+ C K F+ + +L +H KIH
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIH 35
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C ++FT ++ L H +IHT KP S
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+P C+ C +SF Q A L H RIHT KP S
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
RP +CN C F + L +H RIH G KP
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+P +C+ C +SF Q ++L H RIH G +P
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCS 185
K C +C K F D NRH +H G KP+ S
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 96 TCSQCPKTFVDKWHLNRHLKSHSENKVF 123
C C K F D +HLNRH SHS K +
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKPF 291
K+ C +C K F LNRH +H G KP+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIH 201
GIKPFQC C SF++ +L +H + H
Sbjct: 4 GIKPFQCPDCDWSFSRSDHLALHRKRH 30
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIH 257
GIKPF C C FSR D L H K H
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KPH C C +SFS S L +H ++ G NP
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP +C C +SF+ S L +H RIH G P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP C C +SF+ + L +H RIHT P S
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C VC ++F S+L H +H G RP
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C VC F S L +H +H+G +P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C C K + R+ DL+ H ++H G K
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
KP++C C + + +R +L+ H R+H G
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTG 37
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSK 317
KP+ C C + + ++ L+ H R+HT K
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C C K F R L RH IH G K
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEK 39
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C+ C F S L RH IH G KP
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
KP+ C +C F L HLRIHT S P +
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP+ C +C F L HLRIH G P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C C ++F S+ H R+H G RP
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C C F + S +H R+H G +P
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
KP+ C C F Q A L H+ IHT S P +
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C C F Q ++L H+ IH G P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 231 GIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHM 282
I F+C +C FS L +H++ E +K +C +C K FT D H+
Sbjct: 71 AISQFVCPLCLMPFSSSVSLKQHIRYTEHTK--VCPVCKKEFTSTDSALDHV 120
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 147 GVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFT 189
+ F+C +C F+ V +H+R E K C VC + FT
Sbjct: 71 AISQFVCPLCLMPFSSSVSLKQHIRYTEHTK--VCPVCKKEFT 111
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGI 204
KP++C+ C ++F +S L +H R H G+
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGV 38
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTN 315
KP+ C+ C ++F K+LL +H R H
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGI 232
+P++CN C F KS L H R H G+
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGV 38
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 176 IKPFQCSVCSESFTQRSNLNIHLRIHDG 203
+KP+ C+ C ++F +S L IH R H G
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 288 LKPFHCSVCFESFTQKALLNIHLRIHTN 315
+KP+ C+ C ++F K+ L IH R HT
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTG 37
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 234 PFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
P+ C C K FSRK L H + H G K
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEK 39
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 263 YLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
Y C C K F+RK L H R H G KP
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 402 NPFKCDICFKLFTKKSNLRTHIKTH 426
NP++C C K F++K L +H +TH
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTH 35
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 206 PFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
P++C+ C F+ K L H R H G KP
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 178 PFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
P++C C ++F+++ L H R H G +P
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 206 PFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
PF+CN C F++ + L++H IH G P
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 234 PFLCSMCAKCFSRKDDLNRHMKIHEG 259
PF C+ C K FS L++H IH G
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAG 37
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 178 PFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
PF+C+ C ++F+ ++L+ H IH G P
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|1U7H|A Chain A, Structure And A Proposed Mechanism For Ornithine
Cyclodeaminase From Pseudomonas Putida
pdb|1U7H|B Chain B, Structure And A Proposed Mechanism For Ornithine
Cyclodeaminase From Pseudomonas Putida
pdb|1X7D|A Chain A, Crystal Structure Analysis Of Ornithine Cyclodeaminase
Complexed With Nad And Ornithine To 1.6 Angstroms
pdb|1X7D|B Chain B, Crystal Structure Analysis Of Ornithine Cyclodeaminase
Complexed With Nad And Ornithine To 1.6 Angstroms
Length = 350
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 21/116 (18%)
Query: 512 DAARDADIL--VTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHSSIFFD 569
+A + DI+ VTA + ++ + L+ H+NAVG +EL A + ++ +F +
Sbjct: 190 EAVKGVDIITTVTADKAYATIITPDXLEPG-XHLNAVGGDCPGKTELHADVLRNARVFVE 248
Query: 570 SEAAARGELKGLYEQVPAN---------MVGEVGGLIAANLTRDARYPLTVFHSMG 616
E R ++G +Q+PA+ + GE G R + +TVF S+G
Sbjct: 249 YEPQTR--IEGEIQQLPADFPVVDLWRVLRGETEG-------RQSDSQVTVFDSVG 295
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP+ C C +SF S L H R+H G +P
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP++C C +SF + L H R+H+ KP S
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 402 NPFKCDICFKLFTKKSNLRTHIKTH 426
NPFKC C ++FT+++ L H +TH
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 178 PFQCSVCSESFTQRSNLNIHLRIH 201
PF+CS C FTQR+ L H R H
Sbjct: 12 PFKCSKCDRVFTQRNYLVQHERTH 35
>pdb|1RIK|A Chain A, E6-Binding Zinc Finger (E6apc1)
Length = 29
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 56 KFKCNICPKRYARKNRLTNHLRTHE 80
KF C CPKR+ R + LT H+ HE
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHE 26
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 232 IKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+KP++C C + F+ L RH++IH G K
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|1RIM|A Chain A, E6-Binding Zinc Finger (E6apc2)
Length = 33
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 56 KFKCNICPKRYARKNRLTNHLRTHE 80
KF C CPKR+ R + L+ H+ HE
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHE 26
>pdb|2KVH|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 27
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K F C++CP+R + +T HLRTH
Sbjct: 2 KPFSCSLCPQRSRDFSAMTKHLRTH 26
>pdb|2KFQ|A Chain A, Nmr Structure Of Fp1
Length = 32
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 57 FKCNICPKRYARKNRLTNHLRT 78
F C CPKR+ R + L+ H++T
Sbjct: 3 FACPACPKRFMRSDALSKHIKT 24
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 203 GIRPFQCNVCYICFTNKSDLNRHSRIHN---GIKPFLCSMCAKCFSRKDDLNRH 253
G QC +C K+ LN H R H F C C K F + D + H
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 404 FKCDICFKLFTKKSNLRTHIKTHEP------IPCDKCPEIFEKKTDLQEHVDKCH 452
+C+IC +K++L H + H PC+ C + FEK + H K H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 176 IKPFQCSVCSESFTQRSNLNIHLRIHD 202
+KP+QC C SF+ ++ HL HD
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETHD 27
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 234 PFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
F+C +C + F+R++ L RH + H K
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNEK 29
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 263 YLCTMCPKCFTRKDDLNRHMRNHDGLK 289
++C +C + F R++ L RH R+H K
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 178 PFQCSVCSESFTQRSNLNIHLR 199
P+ C C +SFTQR +L +H R
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQR 32
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 234 PFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
F+C +C + F+R++ L RH + H K
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 263 YLCTMCPKCFTRKDDLNRHMRNHDGLK 289
++C +C + F R++ L RH R+H K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENK 121
F C C + F + HL RH +SH+ K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C C + F R +L H +H G +P
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+ ++C C +CF+ S L H +H G KP
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
RP++C C F KS L H R H G KP
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+P++C C ++F +S+L H R H G +P
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+P+ C C ++F K+ L H R HT KP S
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 234 PFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
F+C +C + F+R++ L RH + H K
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
G K +CS C ++F+ S L IH RIH G P
Sbjct: 7 GEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPF+C C + F S H R H G +P
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2KAE|A Chain A, Data-Driven Model Of Med1:dna Complex
Length = 71
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 172 AHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYI 214
+H K FQCS CS + T R ++R +GI QCN C+I
Sbjct: 2 SHMNKKSFQCSNCSVTETIRWR---NIRSKEGI---QCNACFI 38
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 8.2, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ CS C +SF+ L H HT KP S
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 230 NGIKPFLCSM--CAKCFSRKDDLNRHMKIH 257
GIKPF C+ C + FSR D L H K H
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 175 GIKPFQCSV--CSESFTQRSNLNIHLRIH 201
GIKPFQC+ C SF++ +L +H + H
Sbjct: 4 GIKPFQCTWPDCDRSFSRSDHLALHRKRH 32
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPFQC C +F+ +L HLR H+ P
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHD 202
KPF+CS+C + +SNL H+ H
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHS 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,017,517
Number of Sequences: 62578
Number of extensions: 673239
Number of successful extensions: 4443
Number of sequences better than 100.0: 192
Number of HSP's better than 100.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2078
Number of HSP's gapped (non-prelim): 2045
length of query: 617
length of database: 14,973,337
effective HSP length: 105
effective length of query: 512
effective length of database: 8,402,647
effective search space: 4302155264
effective search space used: 4302155264
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)