Query psy13389
Match_columns 617
No_of_seqs 711 out of 4540
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 18:13:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1074|consensus 100.0 5.3E-30 1.1E-34 262.9 2.7 193 262-456 605-934 (958)
2 KOG1074|consensus 100.0 1.7E-29 3.7E-34 259.2 2.9 209 291-527 606-951 (958)
3 KOG3608|consensus 100.0 1.3E-27 2.8E-32 221.8 14.3 303 62-374 36-379 (467)
4 KOG3608|consensus 99.9 3E-27 6.6E-32 219.3 12.8 237 235-486 135-399 (467)
5 KOG2462|consensus 99.9 3.5E-27 7.5E-32 214.6 5.9 131 291-424 131-264 (279)
6 KOG2462|consensus 99.9 8.3E-27 1.8E-31 212.1 6.6 130 207-338 131-263 (279)
7 COG2423 Predicted ornithine cy 99.9 1.4E-26 3.1E-31 225.9 6.0 132 485-617 164-303 (330)
8 PRK06407 ornithine cyclodeamin 99.9 3.2E-24 7E-29 210.9 5.7 128 488-617 154-283 (301)
9 PRK06823 ornithine cyclodeamin 99.9 1.1E-23 2.4E-28 208.0 6.1 114 502-617 178-298 (315)
10 KOG3623|consensus 99.9 1.6E-23 3.4E-28 211.5 6.3 105 123-227 211-330 (1007)
11 KOG3623|consensus 99.9 2.1E-23 4.6E-28 210.6 7.1 78 290-368 894-971 (1007)
12 PRK07589 ornithine cyclodeamin 99.9 1.8E-23 3.9E-28 207.7 6.3 114 502-617 179-295 (346)
13 KOG3007|consensus 99.9 3.1E-23 6.6E-28 187.3 2.7 116 501-617 192-314 (333)
14 PF02423 OCD_Mu_crystall: Orni 99.9 1.4E-22 3.1E-27 201.2 5.5 127 488-617 165-294 (313)
15 TIGR02371 ala_DH_arch alanine 99.9 1.4E-22 3.1E-27 202.4 5.3 113 503-617 179-298 (325)
16 PRK07340 ornithine cyclodeamin 99.9 3.6E-22 7.8E-27 197.5 5.9 107 507-617 179-286 (304)
17 PRK06046 alanine dehydrogenase 99.8 6.9E-22 1.5E-26 198.0 5.4 111 504-617 182-299 (326)
18 PRK08618 ornithine cyclodeamin 99.8 1.6E-21 3.6E-26 195.4 5.0 112 504-617 180-299 (325)
19 PRK06141 ornithine cyclodeamin 99.8 3.6E-20 7.9E-25 184.5 5.2 113 504-617 177-296 (314)
20 TIGR02992 ectoine_eutC ectoine 99.8 3.8E-20 8.2E-25 185.4 5.3 134 479-617 160-301 (326)
21 PRK08291 ectoine utilization p 99.8 9.7E-20 2.1E-24 183.0 5.6 113 503-617 184-304 (330)
22 PRK06199 ornithine cyclodeamin 99.7 5.2E-18 1.1E-22 171.7 5.4 109 503-617 210-346 (379)
23 KOG3576|consensus 99.7 2.5E-17 5.4E-22 142.0 3.1 115 232-346 115-240 (267)
24 KOG3576|consensus 99.7 2.6E-17 5.6E-22 141.9 2.8 128 259-404 114-241 (267)
25 PLN03086 PRLI-interacting fact 99.3 1.3E-11 2.7E-16 128.0 8.7 141 263-423 408-560 (567)
26 PLN03086 PRLI-interacting fact 99.2 3.4E-11 7.4E-16 124.8 10.5 98 264-369 455-562 (567)
27 PHA00733 hypothetical protein 99.1 7.5E-11 1.6E-15 99.7 4.4 83 372-454 37-125 (128)
28 PHA00733 hypothetical protein 99.0 2E-10 4.3E-15 97.1 4.8 82 260-343 38-124 (128)
29 KOG3993|consensus 98.8 4.5E-10 9.8E-15 108.4 -0.5 207 235-453 268-483 (500)
30 PHA02768 hypothetical protein; 98.8 1.9E-09 4.2E-14 74.0 2.2 41 404-444 6-47 (55)
31 KOG3993|consensus 98.8 9.9E-10 2.1E-14 106.1 0.7 159 291-449 268-451 (500)
32 PHA02768 hypothetical protein; 98.7 3.5E-09 7.5E-14 72.7 1.7 44 375-420 5-48 (55)
33 PF13465 zf-H2C2_2: Zinc-finge 98.4 1.2E-07 2.7E-12 55.5 2.1 25 390-414 1-25 (26)
34 PF13465 zf-H2C2_2: Zinc-finge 98.4 2.1E-07 4.6E-12 54.5 2.2 24 306-329 2-25 (26)
35 KOG1146|consensus 98.4 1.4E-07 3.1E-12 104.3 2.5 94 404-499 1261-1354(1406)
36 PHA00732 hypothetical protein 98.3 4.5E-07 9.9E-12 69.1 2.9 45 403-450 1-46 (79)
37 PHA00616 hypothetical protein 98.2 4.1E-07 8.8E-12 59.4 1.3 33 318-350 1-33 (44)
38 PHA00616 hypothetical protein 98.2 6.5E-07 1.4E-11 58.5 1.3 36 375-410 1-36 (44)
39 PHA00732 hypothetical protein 98.2 1.2E-06 2.6E-11 66.8 2.8 48 375-427 1-48 (79)
40 cd05212 NAD_bind_m-THF_DH_Cycl 98.0 2.9E-06 6.3E-11 73.1 3.2 84 476-569 31-118 (140)
41 PF05605 zf-Di19: Drought indu 97.8 2.5E-05 5.5E-10 55.2 4.0 52 428-497 2-53 (54)
42 PF05605 zf-Di19: Drought indu 97.8 2.2E-05 4.7E-10 55.6 3.5 48 376-426 3-52 (54)
43 KOG1146|consensus 97.7 1.4E-05 3E-10 89.2 1.8 72 128-199 442-539 (1406)
44 PF00096 zf-C2H2: Zinc finger, 97.6 3.2E-05 7E-10 44.0 1.2 20 405-424 2-21 (23)
45 PF00096 zf-C2H2: Zinc finger, 97.4 0.00011 2.3E-09 41.8 2.1 18 321-338 3-20 (23)
46 PF12756 zf-C2H2_2: C2H2 type 97.4 8.6E-05 1.9E-09 60.7 1.9 73 320-398 1-73 (100)
47 PF12756 zf-C2H2_2: C2H2 type 97.4 9E-05 2E-09 60.6 1.9 68 430-497 1-74 (100)
48 PF13894 zf-C2H2_4: C2H2-type 97.2 0.00017 3.7E-09 41.3 1.6 23 376-398 1-23 (24)
49 PF13894 zf-C2H2_4: C2H2-type 97.2 0.0002 4.4E-09 41.0 1.8 23 319-341 1-23 (24)
50 COG5189 SFP1 Putative transcri 97.1 0.00013 2.8E-09 68.6 0.5 26 372-397 346-373 (423)
51 PF13912 zf-C2H2_6: C2H2-type 97.1 0.00035 7.5E-09 41.4 1.9 23 404-426 2-24 (27)
52 COG5189 SFP1 Putative transcri 97.0 0.00039 8.5E-09 65.4 2.6 23 55-77 348-372 (423)
53 KOG2231|consensus 97.0 0.0012 2.5E-08 70.4 6.4 48 320-371 184-236 (669)
54 KOG2231|consensus 97.0 0.0016 3.4E-08 69.4 7.3 17 97-114 118-134 (669)
55 PF13912 zf-C2H2_6: C2H2-type 97.0 0.00039 8.4E-09 41.2 1.6 25 318-342 1-25 (27)
56 PF09237 GAGA: GAGA factor; I 96.6 0.0019 4E-08 43.3 2.3 31 316-346 22-52 (54)
57 PF09237 GAGA: GAGA factor; I 96.2 0.0034 7.3E-08 42.1 2.2 32 372-403 21-52 (54)
58 smart00355 ZnF_C2H2 zinc finge 96.1 0.0033 7.1E-08 36.5 1.7 20 430-449 2-21 (26)
59 COG5236 Uncharacterized conser 96.1 0.0071 1.5E-07 57.9 4.5 73 377-454 222-307 (493)
60 COG5236 Uncharacterized conser 95.8 0.015 3.2E-07 55.7 5.4 22 236-257 222-243 (493)
61 PF13909 zf-H2C2_5: C2H2-type 95.8 0.0051 1.1E-07 35.1 1.5 23 319-342 1-23 (24)
62 smart00355 ZnF_C2H2 zinc finge 95.8 0.0084 1.8E-07 34.7 2.5 18 293-310 3-20 (26)
63 PF12874 zf-met: Zinc-finger o 95.8 0.0046 1E-07 35.7 1.2 21 404-424 1-21 (25)
64 PRK00045 hemA glutamyl-tRNA re 95.6 0.0028 6.1E-08 66.5 -0.3 68 508-576 234-308 (423)
65 PF13909 zf-H2C2_5: C2H2-type 95.6 0.0062 1.3E-07 34.8 1.3 21 377-398 2-22 (24)
66 TIGR01035 hemA glutamyl-tRNA r 95.6 0.0028 6.1E-08 66.2 -0.4 68 508-576 232-305 (417)
67 KOG2785|consensus 95.4 0.04 8.6E-07 54.2 6.6 71 375-450 166-242 (390)
68 KOG2482|consensus 95.4 0.029 6.2E-07 53.9 5.5 141 303-450 128-356 (423)
69 PF12874 zf-met: Zinc-finger o 95.3 0.0098 2.1E-07 34.3 1.4 18 293-310 3-20 (25)
70 PRK04860 hypothetical protein; 95.1 0.0098 2.1E-07 52.4 1.4 38 375-416 119-156 (160)
71 PRK04860 hypothetical protein; 94.9 0.015 3.2E-07 51.3 1.9 24 277-300 130-153 (160)
72 cd01079 NAD_bind_m-THF_DH NAD 94.9 0.014 3.1E-07 52.7 1.8 39 510-549 120-158 (197)
73 COG5048 FOG: Zn-finger [Genera 94.7 0.0082 1.8E-07 63.8 -0.0 139 289-427 288-442 (467)
74 COG5048 FOG: Zn-finger [Genera 94.7 0.01 2.2E-07 63.1 0.6 148 233-381 288-452 (467)
75 PF12171 zf-C2H2_jaz: Zinc-fin 94.7 0.011 2.3E-07 34.9 0.3 21 404-424 2-22 (27)
76 PF12171 zf-C2H2_jaz: Zinc-fin 94.3 0.014 3E-07 34.4 0.2 22 376-397 2-23 (27)
77 KOG2482|consensus 93.5 0.078 1.7E-06 51.0 3.8 163 332-500 129-361 (423)
78 TIGR00622 ssl1 transcription f 92.3 0.27 5.8E-06 40.0 4.8 95 317-435 14-110 (112)
79 PLN02516 methylenetetrahydrofo 91.9 0.089 1.9E-06 51.5 1.9 40 508-549 202-241 (299)
80 KOG4173|consensus 91.8 0.04 8.7E-07 48.9 -0.5 87 404-497 80-170 (253)
81 PF13913 zf-C2HC_2: zinc-finge 91.7 0.13 2.8E-06 29.6 1.7 18 405-423 4-21 (25)
82 PF13913 zf-C2HC_2: zinc-finge 91.2 0.16 3.5E-06 29.2 1.7 21 429-450 3-23 (25)
83 PF02882 THF_DHG_CYH_C: Tetrah 91.1 0.091 2E-06 46.5 0.9 42 508-551 71-112 (160)
84 smart00451 ZnF_U1 U1-like zinc 90.2 0.18 4E-06 31.7 1.6 20 404-423 4-23 (35)
85 KOG2785|consensus 89.7 0.39 8.5E-06 47.5 4.0 27 55-81 165-191 (390)
86 TIGR00622 ssl1 transcription f 89.6 0.56 1.2E-05 38.2 4.2 76 375-453 15-105 (112)
87 smart00451 ZnF_U1 U1-like zinc 89.5 0.25 5.4E-06 31.0 1.8 23 375-397 3-25 (35)
88 KOG4173|consensus 89.4 0.14 3E-06 45.6 0.7 79 262-343 79-171 (253)
89 PRK14190 bifunctional 5,10-met 89.1 0.16 3.4E-06 49.5 0.8 40 509-550 194-233 (284)
90 KOG2893|consensus 88.9 0.11 2.4E-06 47.2 -0.2 41 378-422 13-53 (341)
91 PRK14189 bifunctional 5,10-met 88.9 0.18 3.9E-06 49.1 1.1 40 509-550 194-233 (285)
92 cd01080 NAD_bind_m-THF_DH_Cycl 88.9 0.17 3.6E-06 45.5 0.8 39 509-549 80-118 (168)
93 PRK14188 bifunctional 5,10-met 88.7 0.24 5.1E-06 48.7 1.8 69 476-550 161-233 (296)
94 PRK14170 bifunctional 5,10-met 87.7 0.23 5.1E-06 48.2 1.1 40 509-550 193-232 (284)
95 PRK14181 bifunctional 5,10-met 87.6 0.22 4.8E-06 48.4 0.8 40 509-550 193-232 (287)
96 PRK14174 bifunctional 5,10-met 87.3 0.23 4.9E-06 48.7 0.7 40 509-550 199-238 (295)
97 PRK14193 bifunctional 5,10-met 86.6 0.28 6.1E-06 47.7 0.9 40 509-550 196-235 (284)
98 PRK14178 bifunctional 5,10-met 86.2 0.27 5.9E-06 47.7 0.6 41 508-550 187-227 (279)
99 PRK14173 bifunctional 5,10-met 85.9 0.32 6.8E-06 47.4 0.9 40 509-550 191-230 (287)
100 PRK14185 bifunctional 5,10-met 85.7 0.34 7.3E-06 47.3 1.0 41 508-550 196-236 (293)
101 PLN00203 glutamyl-tRNA reducta 85.7 0.34 7.3E-06 51.9 1.1 65 506-574 319-395 (519)
102 PRK14177 bifunctional 5,10-met 85.7 0.5 1.1E-05 45.9 2.1 40 509-550 195-234 (284)
103 cd00350 rubredoxin_like Rubred 85.4 0.56 1.2E-05 29.1 1.5 9 345-353 16-24 (33)
104 PRK14194 bifunctional 5,10-met 85.3 0.34 7.3E-06 47.6 0.7 40 509-550 195-234 (301)
105 KOG4230|consensus 85.2 0.65 1.4E-05 48.4 2.7 71 508-586 197-269 (935)
106 PRK14168 bifunctional 5,10-met 85.0 0.37 8E-06 47.2 0.9 40 509-550 201-240 (297)
107 KOG2893|consensus 85.0 0.33 7.2E-06 44.3 0.5 41 181-225 13-53 (341)
108 PRK14182 bifunctional 5,10-met 84.9 0.38 8.2E-06 46.7 0.9 40 509-550 193-232 (282)
109 PF01488 Shikimate_DH: Shikima 84.9 0.67 1.4E-05 40.0 2.4 54 505-562 64-120 (135)
110 PRK14186 bifunctional 5,10-met 84.7 0.4 8.7E-06 47.0 1.0 40 509-550 194-233 (297)
111 PLN02897 tetrahydrofolate dehy 84.1 0.43 9.2E-06 47.5 0.9 40 509-550 250-289 (345)
112 PLN02616 tetrahydrofolate dehy 84.1 0.43 9.2E-06 47.8 0.9 41 508-550 266-306 (364)
113 PF00670 AdoHcyase_NAD: S-aden 84.1 0.56 1.2E-05 41.3 1.5 52 508-564 70-124 (162)
114 PRK14171 bifunctional 5,10-met 83.9 0.45 9.7E-06 46.4 0.9 39 509-549 195-233 (288)
115 PRK14175 bifunctional 5,10-met 83.5 0.48 1E-05 46.2 1.0 39 509-549 194-232 (286)
116 PF12013 DUF3505: Protein of u 83.0 1.8 3.9E-05 35.7 4.0 24 261-285 10-33 (109)
117 PF12013 DUF3505: Protein of u 82.9 2.6 5.6E-05 34.7 5.0 25 233-258 10-34 (109)
118 PRK14172 bifunctional 5,10-met 82.8 0.51 1.1E-05 45.8 0.8 40 509-550 194-233 (278)
119 PRK14169 bifunctional 5,10-met 82.7 0.51 1.1E-05 45.9 0.8 40 509-550 192-231 (282)
120 PRK14167 bifunctional 5,10-met 82.7 0.53 1.2E-05 46.1 0.9 73 476-550 160-236 (297)
121 PRK14183 bifunctional 5,10-met 82.6 0.52 1.1E-05 45.7 0.8 40 509-550 193-232 (281)
122 PRK14187 bifunctional 5,10-met 82.6 0.54 1.2E-05 46.0 0.9 40 509-550 196-235 (294)
123 PRK14191 bifunctional 5,10-met 82.4 0.46 1E-05 46.2 0.4 40 509-550 193-232 (285)
124 COG4049 Uncharacterized protei 81.6 0.8 1.7E-05 31.4 1.1 32 467-498 11-42 (65)
125 PRK14180 bifunctional 5,10-met 81.5 0.64 1.4E-05 45.2 1.0 40 509-550 194-233 (282)
126 PRK13940 glutamyl-tRNA reducta 81.4 0.87 1.9E-05 47.4 2.0 52 507-562 233-284 (414)
127 PRK14166 bifunctional 5,10-met 80.7 0.68 1.5E-05 45.0 0.8 69 476-550 160-232 (282)
128 PRK10792 bifunctional 5,10-met 80.1 0.75 1.6E-05 44.8 0.9 39 509-549 195-233 (285)
129 PRK14184 bifunctional 5,10-met 79.6 0.72 1.6E-05 45.0 0.6 40 509-550 197-236 (286)
130 PRK14179 bifunctional 5,10-met 79.5 0.78 1.7E-05 44.7 0.8 40 509-550 194-233 (284)
131 PRK14192 bifunctional 5,10-met 78.9 0.85 1.8E-05 44.8 0.9 39 509-549 195-233 (283)
132 COG0373 HemA Glutamyl-tRNA red 78.5 1.1 2.3E-05 46.2 1.4 87 477-574 206-300 (414)
133 PRK14176 bifunctional 5,10-met 77.9 1 2.2E-05 44.0 1.0 39 509-549 200-238 (287)
134 COG0190 FolD 5,10-methylene-te 77.7 1.1 2.3E-05 43.3 1.1 40 508-549 191-230 (283)
135 COG4049 Uncharacterized protei 75.4 1 2.2E-05 30.9 0.2 29 371-399 13-41 (65)
136 PF09538 FYDLN_acid: Protein o 73.9 2.2 4.8E-05 34.8 1.9 8 265-272 12-19 (108)
137 PF09538 FYDLN_acid: Protein o 72.9 2.4 5.2E-05 34.6 1.9 14 317-330 25-38 (108)
138 cd00729 rubredoxin_SM Rubredox 72.3 1.9 4.1E-05 26.9 0.9 7 347-353 3-9 (34)
139 PF09986 DUF2225: Uncharacteri 72.2 0.59 1.3E-05 43.8 -2.1 13 429-441 49-61 (214)
140 PRK14982 acyl-ACP reductase; P 71.7 2.5 5.5E-05 42.5 2.1 49 509-562 208-257 (340)
141 PF09986 DUF2225: Uncharacteri 71.4 0.92 2E-05 42.5 -1.0 43 374-416 4-61 (214)
142 TIGR00373 conserved hypothetic 69.9 4.1 8.9E-05 36.1 2.8 32 400-437 106-137 (158)
143 COG1592 Rubrerythrin [Energy p 67.9 3.2 6.9E-05 36.7 1.7 12 371-382 145-156 (166)
144 KOG0717|consensus 65.9 2.9 6.4E-05 42.7 1.2 22 57-78 293-314 (508)
145 TIGR00373 conserved hypothetic 65.8 6.9 0.00015 34.7 3.4 32 259-299 106-137 (158)
146 cd01065 NAD_bind_Shikimate_DH 63.8 5.7 0.00012 34.9 2.6 62 508-571 73-139 (155)
147 PF13717 zinc_ribbon_4: zinc-r 63.7 6.6 0.00014 24.9 2.1 9 151-159 26-34 (36)
148 PF02892 zf-BED: BED zinc fing 63.3 4.1 8.9E-05 27.2 1.2 22 402-423 15-40 (45)
149 PRK06266 transcription initiat 63.2 6.2 0.00013 35.7 2.7 32 401-438 115-146 (178)
150 PF13719 zinc_ribbon_5: zinc-r 62.7 5.6 0.00012 25.4 1.6 9 125-133 5-13 (37)
151 PRK00464 nrdR transcriptional 62.3 2.1 4.6E-05 37.5 -0.4 15 429-443 29-43 (154)
152 KOG1370|consensus 61.3 5.2 0.00011 38.7 1.9 53 508-564 261-315 (434)
153 TIGR02300 FYDLN_acid conserved 61.3 6 0.00013 32.9 2.0 11 290-300 26-36 (129)
154 PRK00464 nrdR transcriptional 61.1 1.6 3.4E-05 38.3 -1.5 41 376-419 1-44 (154)
155 KOG4167|consensus 61.0 3.3 7.1E-05 44.6 0.6 26 93-118 791-816 (907)
156 COG1592 Rubrerythrin [Energy p 60.9 4.9 0.00011 35.6 1.5 9 290-298 134-142 (166)
157 PRK00398 rpoP DNA-directed RNA 60.8 2 4.2E-05 29.0 -0.8 11 376-386 4-14 (46)
158 smart00659 RPOLCX RNA polymera 60.6 5.1 0.00011 26.7 1.2 11 319-329 3-13 (44)
159 PF03604 DNA_RNApol_7kD: DNA d 60.2 4.5 9.8E-05 24.8 0.8 8 428-435 17-24 (32)
160 KOG2071|consensus 60.0 7.2 0.00015 41.5 2.8 18 468-485 508-525 (579)
161 TIGR02098 MJ0042_CXXC MJ0042 f 59.9 5.9 0.00013 25.3 1.4 6 153-158 5-10 (38)
162 KOG2186|consensus 59.7 4.1 8.8E-05 38.1 0.8 49 347-399 4-52 (276)
163 PF10571 UPF0547: Uncharacteri 59.3 5.2 0.00011 23.2 0.9 9 405-413 16-24 (26)
164 PF09723 Zn-ribbon_8: Zinc rib 58.9 2.1 4.6E-05 28.2 -0.8 11 376-386 6-16 (42)
165 TIGR02300 FYDLN_acid conserved 58.8 7.1 0.00015 32.5 2.0 25 319-354 10-34 (129)
166 smart00531 TFIIE Transcription 58.7 11 0.00024 33.0 3.4 15 261-275 98-112 (147)
167 PRK06266 transcription initiat 58.5 9.6 0.00021 34.5 3.0 18 261-278 116-133 (178)
168 smart00531 TFIIE Transcription 58.3 9.9 0.00021 33.3 3.0 38 287-328 96-133 (147)
169 smart00734 ZnF_Rad18 Rad18-lik 57.7 7.8 0.00017 22.5 1.5 21 429-450 2-22 (26)
170 cd05213 NAD_bind_Glutamyl_tRNA 57.4 4.5 9.8E-05 40.5 0.8 64 508-576 230-301 (311)
171 PF06524 NOA36: NOA36 protein; 57.1 4.5 9.7E-05 37.9 0.7 23 428-450 209-231 (314)
172 smart00834 CxxC_CXXC_SSSS Puta 56.9 2.8 6.1E-05 27.3 -0.5 11 376-386 6-16 (41)
173 PF12907 zf-met2: Zinc-binding 56.8 4.5 9.7E-05 26.3 0.4 25 429-453 2-29 (40)
174 COG1198 PriA Primosomal protei 56.7 7.5 0.00016 43.3 2.4 40 376-437 445-484 (730)
175 COG2888 Predicted Zn-ribbon RN 56.1 8 0.00017 27.3 1.6 12 375-386 27-38 (61)
176 PF03446 NAD_binding_2: NAD bi 55.8 3.4 7.5E-05 36.9 -0.3 66 504-570 45-118 (163)
177 KOG0089|consensus 55.5 6.1 0.00013 37.6 1.3 61 511-577 214-275 (309)
178 COG1198 PriA Primosomal protei 54.8 9 0.0002 42.7 2.6 10 402-411 474-483 (730)
179 KOG2186|consensus 54.7 8 0.00017 36.2 1.9 46 376-424 4-49 (276)
180 PF06524 NOA36: NOA36 protein; 54.2 5.3 0.00012 37.4 0.7 89 314-426 138-232 (314)
181 COG5151 SSL1 RNA polymerase II 53.5 9 0.00019 36.8 2.0 49 377-427 364-412 (421)
182 COG1996 RPC10 DNA-directed RNA 52.3 6.7 0.00015 26.7 0.7 10 376-385 7-16 (49)
183 COG5322 Predicted dehydrogenas 51.5 25 0.00053 33.7 4.5 52 508-564 223-274 (351)
184 PRK04023 DNA polymerase II lar 51.5 15 0.00032 41.8 3.6 88 516-607 742-844 (1121)
185 COG1997 RPL43A Ribosomal prote 50.9 10 0.00022 29.2 1.6 14 374-387 52-65 (89)
186 KOG2636|consensus 50.8 11 0.00024 38.3 2.3 24 92-115 399-423 (497)
187 PHA00626 hypothetical protein 50.2 6.2 0.00013 27.4 0.3 12 375-386 23-34 (59)
188 PRK14890 putative Zn-ribbon RN 49.2 11 0.00024 26.7 1.4 10 375-384 25-34 (59)
189 smart00614 ZnF_BED BED zinc fi 49.1 12 0.00025 25.8 1.6 22 431-452 21-47 (50)
190 COG3364 Zn-ribbon containing p 48.5 17 0.00036 28.8 2.4 85 473-569 2-88 (112)
191 KOG2593|consensus 48.1 11 0.00023 38.5 1.7 8 531-538 282-289 (436)
192 KOG2807|consensus 47.8 25 0.00053 34.4 4.0 31 289-325 344-374 (378)
193 PF15269 zf-C2H2_7: Zinc-finge 47.7 13 0.00028 24.4 1.5 23 56-78 20-42 (54)
194 PRK14714 DNA polymerase II lar 47.4 46 0.001 39.2 6.7 16 592-607 876-891 (1337)
195 PF01210 NAD_Gly3P_dh_N: NAD-d 46.9 6.6 0.00014 34.8 0.1 59 503-562 56-119 (157)
196 PF15269 zf-C2H2_7: Zinc-finge 46.1 14 0.0003 24.3 1.4 21 404-424 21-41 (54)
197 PF11931 DUF3449: Domain of un 45.8 8.2 0.00018 35.2 0.5 20 94-113 101-121 (196)
198 KOG2807|consensus 45.4 29 0.00062 34.0 4.0 68 375-453 290-369 (378)
199 PRK09678 DNA-binding transcrip 44.9 5.7 0.00012 29.7 -0.5 42 429-489 2-45 (72)
200 TIGR02605 CxxC_CxxC_SSSS putat 44.9 11 0.00024 26.1 0.9 11 207-217 6-16 (52)
201 PLN02494 adenosylhomocysteinas 44.5 9.6 0.00021 40.1 0.8 50 509-563 302-354 (477)
202 COG4821 Uncharacterized protei 42.6 23 0.00049 32.2 2.7 58 514-571 102-167 (243)
203 PRK04023 DNA polymerase II lar 41.6 18 0.0004 41.1 2.4 37 527-564 716-753 (1121)
204 PF02176 zf-TRAF: TRAF-type zi 41.6 13 0.00027 26.6 0.9 38 375-413 9-52 (60)
205 cd00730 rubredoxin Rubredoxin; 41.2 26 0.00056 24.1 2.2 11 429-439 2-12 (50)
206 PTZ00075 Adenosylhomocysteinas 40.2 12 0.00025 39.6 0.7 39 509-549 302-343 (476)
207 TIGR01384 TFS_arch transcripti 40.1 10 0.00023 30.8 0.3 12 473-484 62-73 (104)
208 PF14353 CpXC: CpXC protein 39.7 4.2 9.1E-05 34.6 -2.3 52 429-488 2-53 (128)
209 PF04959 ARS2: Arsenite-resist 38.8 13 0.00029 34.5 0.8 26 428-453 77-102 (214)
210 PF05191 ADK_lid: Adenylate ki 38.0 7.4 0.00016 24.7 -0.7 8 265-272 4-11 (36)
211 PTZ00255 60S ribosomal protein 37.8 15 0.00033 28.7 0.8 14 374-387 53-66 (90)
212 PF05443 ROS_MUCR: ROS/MUCR tr 37.8 14 0.00031 31.4 0.7 28 428-458 72-99 (132)
213 TIGR00595 priA primosomal prot 37.7 23 0.00049 38.2 2.4 11 344-354 238-248 (505)
214 COG5151 SSL1 RNA polymerase II 37.7 13 0.00029 35.7 0.6 48 405-453 364-412 (421)
215 PRK14873 primosome assembly pr 37.4 19 0.0004 40.2 1.7 39 376-437 393-431 (665)
216 COG4530 Uncharacterized protei 36.9 21 0.00045 28.6 1.4 12 289-300 25-36 (129)
217 PF07754 DUF1610: Domain of un 36.6 16 0.00034 20.8 0.5 11 471-481 14-24 (24)
218 PRK06476 pyrroline-5-carboxyla 36.6 11 0.00025 36.5 -0.0 44 505-549 50-95 (258)
219 KOG2272|consensus 35.6 12 0.00027 34.8 -0.0 118 93-219 98-234 (332)
220 TIGR00595 priA primosomal prot 34.6 21 0.00045 38.5 1.6 40 376-437 223-262 (505)
221 TIGR00280 L37a ribosomal prote 34.4 16 0.00034 28.6 0.4 14 374-387 52-65 (91)
222 KOG4124|consensus 34.2 20 0.00043 35.3 1.2 83 427-521 348-434 (442)
223 PF05443 ROS_MUCR: ROS/MUCR tr 33.9 19 0.0004 30.7 0.8 24 319-345 73-96 (132)
224 KOG2593|consensus 33.6 38 0.00083 34.7 3.1 19 260-278 126-144 (436)
225 PRK14873 primosome assembly pr 33.6 26 0.00055 39.1 2.0 10 345-354 409-418 (665)
226 PF09416 UPF1_Zn_bind: RNA hel 33.1 27 0.00059 30.4 1.7 49 429-482 15-69 (152)
227 COG1974 LexA SOS-response tran 31.9 1.1E+02 0.0023 28.4 5.4 73 481-564 35-109 (201)
228 PF04959 ARS2: Arsenite-resist 31.8 22 0.00049 33.1 1.0 28 374-401 76-103 (214)
229 TIGR00507 aroE shikimate 5-deh 31.5 69 0.0015 31.3 4.5 56 513-570 175-236 (270)
230 KOG1280|consensus 31.2 39 0.00084 33.4 2.5 26 428-453 79-104 (381)
231 PF01780 Ribosomal_L37ae: Ribo 30.5 12 0.00025 29.3 -0.9 12 375-386 53-64 (90)
232 cd05191 NAD_bind_amino_acid_DH 30.1 35 0.00076 26.5 1.8 27 518-545 56-84 (86)
233 COG0499 SAM1 S-adenosylhomocys 29.6 29 0.00063 34.8 1.4 50 508-562 256-308 (420)
234 PF02826 2-Hacid_dh_C: D-isome 29.3 19 0.0004 32.7 0.1 42 507-549 82-129 (178)
235 PRK03976 rpl37ae 50S ribosomal 29.3 22 0.00047 27.9 0.4 14 374-387 53-66 (90)
236 PRK05476 S-adenosyl-L-homocyst 28.9 27 0.00059 36.5 1.2 41 509-551 260-303 (425)
237 COG0078 ArgF Ornithine carbamo 28.7 37 0.00081 33.3 2.0 49 479-527 184-232 (310)
238 PRK08605 D-lactate dehydrogena 28.3 25 0.00055 35.5 0.9 44 507-551 191-240 (332)
239 PRK14714 DNA polymerase II lar 28.3 43 0.00094 39.4 2.7 21 405-437 681-701 (1337)
240 PRK05580 primosome assembly pr 28.0 40 0.00088 37.9 2.4 9 346-354 408-416 (679)
241 KOG3408|consensus 27.9 63 0.0014 26.7 2.8 28 51-78 52-79 (129)
242 PF13240 zinc_ribbon_2: zinc-r 27.5 31 0.00067 19.3 0.7 6 378-383 16-21 (23)
243 PLN02928 oxidoreductase family 26.9 26 0.00055 35.7 0.6 51 507-562 217-273 (347)
244 COG3357 Predicted transcriptio 26.7 37 0.0008 26.4 1.2 14 55-68 57-70 (97)
245 TIGR00936 ahcY adenosylhomocys 26.4 28 0.00061 36.1 0.8 47 510-561 244-293 (406)
246 PF05290 Baculo_IE-1: Baculovi 26.1 32 0.0007 28.9 0.9 15 93-107 79-93 (140)
247 PRK15059 tartronate semialdehy 25.8 28 0.00061 34.5 0.6 64 506-570 45-117 (292)
248 COG3414 SgaB Phosphotransferas 25.6 64 0.0014 25.6 2.5 47 478-524 7-57 (93)
249 COG2331 Uncharacterized protei 25.2 30 0.00065 25.8 0.5 32 403-438 12-43 (82)
250 PF03833 PolC_DP2: DNA polymer 25.2 24 0.00052 39.5 0.0 29 402-443 679-707 (900)
251 TIGR01692 HIBADH 3-hydroxyisob 25.0 34 0.00073 33.8 1.1 64 506-570 42-114 (288)
252 COG4896 Uncharacterized protei 24.9 28 0.00062 24.6 0.3 37 348-384 4-40 (68)
253 cd01078 NAD_bind_H4MPT_DH NADP 24.8 31 0.00067 31.7 0.7 37 511-548 92-130 (194)
254 PRK12557 H(2)-dependent methyl 23.5 35 0.00076 34.6 0.8 47 505-552 70-121 (342)
255 COG4957 Predicted transcriptio 23.4 51 0.0011 27.8 1.6 25 376-403 77-101 (148)
256 cd00401 AdoHcyase S-adenosyl-L 23.4 40 0.00086 35.2 1.2 47 511-562 252-301 (413)
257 TIGR01724 hmd_rel H2-forming N 23.2 34 0.00074 34.0 0.7 47 504-551 69-120 (341)
258 smart00154 ZnF_AN1 AN1-like Zi 23.0 38 0.00082 21.9 0.6 15 473-487 12-26 (39)
259 PRK15461 NADH-dependent gamma- 23.0 35 0.00076 33.9 0.7 64 506-570 47-119 (296)
260 COG4888 Uncharacterized Zn rib 22.7 24 0.00052 28.0 -0.4 10 375-384 22-31 (104)
261 COG0287 TyrA Prephenate dehydr 22.4 41 0.00089 33.0 1.0 39 511-550 59-101 (279)
262 COG2084 MmsB 3-hydroxyisobutyr 22.2 33 0.00072 33.6 0.4 65 505-570 46-119 (286)
263 KOG4167|consensus 22.2 9.7 0.00021 41.3 -3.5 28 472-499 791-818 (907)
264 PF09963 DUF2197: Uncharacteri 22.1 34 0.00074 24.1 0.3 6 376-381 32-37 (56)
265 COG4957 Predicted transcriptio 21.7 52 0.0011 27.7 1.3 24 263-289 77-100 (148)
266 PRK08818 prephenate dehydrogen 21.7 31 0.00067 35.4 0.1 41 509-550 44-91 (370)
267 PRK00258 aroE shikimate 5-dehy 21.5 79 0.0017 31.0 2.9 41 510-552 179-225 (278)
268 PF13824 zf-Mss51: Zinc-finger 21.5 55 0.0012 23.0 1.2 14 425-438 11-24 (55)
269 cd05311 NAD_bind_2_malic_enz N 21.2 62 0.0013 30.7 1.9 57 509-570 90-150 (226)
270 PRK12380 hydrogenase nickel in 21.0 41 0.0009 27.8 0.6 12 376-387 71-82 (113)
271 PF12760 Zn_Tnp_IS1595: Transp 20.3 1.5E+02 0.0033 19.7 3.2 6 263-268 38-43 (46)
272 COG1998 RPS31 Ribosomal protei 20.2 57 0.0012 22.2 1.0 8 376-383 38-45 (51)
273 COG3677 Transposase and inacti 20.1 26 0.00056 29.8 -0.7 15 426-440 51-65 (129)
274 cd05567 PTS_IIB_mannitol PTS_I 20.1 80 0.0017 24.5 2.1 48 478-525 6-54 (87)
No 1
>KOG1074|consensus
Probab=99.95 E-value=5.3e-30 Score=262.88 Aligned_cols=193 Identities=24% Similarity=0.550 Sum_probs=147.6
Q ss_pred ceecCCCCCcCCCHHHHHHHHHhcCCCCCcccCccccccCCHHHHHHHHHHhCCCC----CccCC---ccccccCChhhH
Q psy13389 262 RYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSK----PHACS---ICTESFSQKSNL 334 (617)
Q Consensus 262 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~----~~~C~---~C~~~f~~~~~l 334 (617)
+-.|-+|.++..-++.|+.|+++|+|++||+|.+||+.|.++.+|+.|+-+|...- ++.|+ +|.+.|.+.-.|
T Consensus 605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~l 684 (958)
T KOG1074|consen 605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTL 684 (958)
T ss_pred ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccccccccc
Confidence 46799999999999999999999999999999999999999999999998886543 47799 899999999999
Q ss_pred HHHHhhhcCCC-------------CccCCCCCCCccCChhHHHHHhhhc----------------cCCC----CcccCcc
Q psy13389 335 YIHLKLQHGVN-------------PFKCDVCPNETFEKETQLSLHMRTV----------------HGVK----PFKCSMC 381 (617)
Q Consensus 335 ~~H~~~h~~~~-------------~~~C~~C~~~~f~~~~~l~~H~~~h----------------~~~~----~~~C~~C 381 (617)
..|+++|.+.. .-+|..|.+ .|.....+..++..| ..+. +..+..|
T Consensus 685 pQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk-~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~tp~~~e~~~ 763 (958)
T KOG1074|consen 685 PQHIRIHLGGQISNGGTAAEGILAADQCSSCQK-TFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVTPPPPENSC 763 (958)
T ss_pred cceEEeecCCCCCCCcccccccchhcccchhhh-cccccccchhhhhccCCcccCCcccccccccccccccCCCcccccc
Confidence 99999887421 135777776 565555555554443 2222 4667777
Q ss_pred CCcCCCchhHHHHhhhh-----------------------cCCC------------------------------------
Q psy13389 382 DEGFPKKSVLKEHLRVS-----------------------HNVN------------------------------------ 402 (617)
Q Consensus 382 ~~~f~~~~~l~~H~~~h-----------------------~~~~------------------------------------ 402 (617)
+..+.....+..+-..+ ++++
T Consensus 764 ~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg~~t 843 (958)
T KOG1074|consen 764 GRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLNEGLAT 843 (958)
T ss_pred ccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhccccccccccccc
Confidence 77777665554442211 0000
Q ss_pred -----------------------------------ccccccccccccChHhHHHHHHcCC---CCCCccccccccCchhH
Q psy13389 403 -----------------------------------PFKCDICFKLFTKKSNLRTHIKTHE---PIPCDKCPEIFEKKTDL 444 (617)
Q Consensus 403 -----------------------------------~~~C~~C~~~f~~~~~l~~H~~~h~---~~~C~~C~~~f~~~~~l 444 (617)
...|.+||+.|.+.++|..|+++|. ||.|.+|++.|..+.+|
T Consensus 844 ~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnL 923 (958)
T KOG1074|consen 844 KTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNL 923 (958)
T ss_pred ccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhh
Confidence 1569999999999999999999996 89999999999999999
Q ss_pred HHHHhhhCCCCc
Q psy13389 445 QEHVDKCHNLHE 456 (617)
Q Consensus 445 ~~H~~~~H~~~~ 456 (617)
+.||.+ |.+.+
T Consensus 924 KvHMgt-H~w~q 934 (958)
T KOG1074|consen 924 KVHMGT-HMWVQ 934 (958)
T ss_pred hhhhcc-ccccC
Confidence 999997 65543
No 2
>KOG1074|consensus
Probab=99.95 E-value=1.7e-29 Score=259.18 Aligned_cols=209 Identities=22% Similarity=0.435 Sum_probs=165.7
Q ss_pred cccCccccccCCHHHHHHHHHHhCCCCCccCCccccccCChhhHHHHHhhhcCCC----CccCC---CCCCCccCChhHH
Q psy13389 291 FHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVN----PFKCD---VCPNETFEKETQL 363 (617)
Q Consensus 291 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~----~~~C~---~C~~~~f~~~~~l 363 (617)
-+|-+|-+...-++.|+.|.++|+|++||+|.+||+.|.++.+|+.||-.|...- +|.|+ +|-+ .|.....|
T Consensus 606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~-kftn~V~l 684 (958)
T KOG1074|consen 606 NQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQK-KFTNAVTL 684 (958)
T ss_pred cceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcc-cccccccc
Confidence 6799999999999999999999999999999999999999999999998887553 47799 9987 78888899
Q ss_pred HHHhhhccCC-C------------CcccCccCCcCCCchhHHHHhhhhcC----------------CC----cccccccc
Q psy13389 364 SLHMRTVHGV-K------------PFKCSMCDEGFPKKSVLKEHLRVSHN----------------VN----PFKCDICF 410 (617)
Q Consensus 364 ~~H~~~h~~~-~------------~~~C~~C~~~f~~~~~l~~H~~~h~~----------------~~----~~~C~~C~ 410 (617)
..|++.|.+. . .-+|..|.+.|.....+..++..|.+ +. +..+..|+
T Consensus 685 pQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~tp~~~e~~~~ 764 (958)
T KOG1074|consen 685 PQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVTPPPPENSCG 764 (958)
T ss_pred cceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccccCCCccccccc
Confidence 9999998832 1 14699999999888888888776622 12 46788888
Q ss_pred ccccChHhHHHHHHcCC---------------------------------------------------------------
Q psy13389 411 KLFTKKSNLRTHIKTHE--------------------------------------------------------------- 427 (617)
Q Consensus 411 ~~f~~~~~l~~H~~~h~--------------------------------------------------------------- 427 (617)
..+.....+..+-..+.
T Consensus 765 ~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg~~t~ 844 (958)
T KOG1074|consen 765 RELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLNEGLATK 844 (958)
T ss_pred cccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhcccccccccccccc
Confidence 88877666555422110
Q ss_pred ----------------------------------CCCCccccccccCchhHHHHHhhhCCCCccccccccCCCCCCCCcc
Q psy13389 428 ----------------------------------PIPCDKCPEIFEKKTDLQEHVDKCHNLHEEDEEEGLDEFDAPKEKS 473 (617)
Q Consensus 428 ----------------------------------~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~~~~~k~ 473 (617)
...|..||+.|.+.+.|++|+++ |+ ++||
T Consensus 845 ~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rT-Ht----------------g~KP 907 (958)
T KOG1074|consen 845 TNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRT-HT----------------GPKP 907 (958)
T ss_pred cccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhc-CC----------------CCCC
Confidence 05699999999999999999999 98 9999
Q ss_pred cccCccccccccchhHHHHHhhhhcCCCCCcccccccccccccccceeeeccCC
Q psy13389 474 FNCSKCLNIVRIPVEIKSLVEKLTSEGVPAVQAYEHGEDAARDADILVTATYSS 527 (617)
Q Consensus 474 f~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~adiv~~~t~s~ 527 (617)
|.|.+|++.|..+..|+.|+..|.-.. +.. -++.-+.+++|+.+
T Consensus 908 F~C~fC~~aFttrgnLKvHMgtH~w~q--~~s--------rrG~~~~~~~~~vs 951 (958)
T KOG1074|consen 908 FFCHFCEEAFTTRGNLKVHMGTHMWVQ--PPS--------RRGPSPFIGSTGVS 951 (958)
T ss_pred ccchhhhhhhhhhhhhhhhhccccccC--CCc--------cCCCCcccCCCCCC
Confidence 999999999999999999999887332 111 12555666666544
No 3
>KOG3608|consensus
Probab=99.95 E-value=1.3e-27 Score=221.80 Aligned_cols=303 Identities=23% Similarity=0.479 Sum_probs=224.9
Q ss_pred CccccCChHHHHHHHHhhcCCCCCCcCCCC-CcccccC--CCCcccCC-hHHHHHHHHhhcCCC------cee------c
Q psy13389 62 CPKRYARKNRLTNHLRTHEAGSGDEKSEGG-EGSFTCS--QCPKTFVD-KWHLNRHLKSHSENK------VFR------C 125 (617)
Q Consensus 62 C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~-~~~~~C~--~C~~~f~~-~~~l~~H~~~h~~~~------~~~------C 125 (617)
|.-..+....+..|+..|....++...... ...+.|. .|++...+ ...|.+|.-.|--.. ... =
T Consensus 36 C~~~~s~~~h~~dHL~~h~~~~~e~~~~~eh~de~qC~w~~C~f~~~~~s~~l~RHvy~H~y~~~l~q~G~~al~~~~di 115 (467)
T KOG3608|consen 36 CTGEWSLNGHIGDHLEHHAKAQDERGAHAEHTDEHQCTWNSCDFRTENSSADLIRHVYFHCYHTKLKQQGKLALDLHPDI 115 (467)
T ss_pred hcchhhhhhHHHHHHHhhhccccccccccccccceeEEeccCCccccchHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCc
Confidence 333344444555555555443333222221 2257775 58887766 578999987652100 000 0
Q ss_pred cccccccCCHHHHHHHHHhcCCCcceec--CccccccCChHHHHHHHHHccC------------CC-CcccC--cCcccc
Q psy13389 126 EQCRFDFYVKREYNRHMKIHDGVKVFLC--SVCSKTFTDKVKFNRHMRAHEG------------IK-PFQCS--VCSESF 188 (617)
Q Consensus 126 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~------------~~-~~~C~--~C~~~f 188 (617)
..|...|.....+ -.-...|.| ..|+..|.+...|..|+..|.- ++ .+.|. .|-+.|
T Consensus 116 g~c~~~f~~~~~i------p~~g~~f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~ 189 (467)
T KOG3608|consen 116 GACTAPFRLMEKI------PALGQNFRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHM 189 (467)
T ss_pred CcccCCcchhhcc------ccchhhhccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhh
Confidence 1122222221111 111123667 4688888888888888776632 11 24454 588999
Q ss_pred CChHHHHHHHHhccCCCCcccCCCcccccCchhhhhhhhhhc--CCCcccCCCCccccCChhHHHHHHhhccCCCceecC
Q psy13389 189 TQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHN--GIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266 (617)
Q Consensus 189 ~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~--~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~ 266 (617)
.+++.|+.|++.|++++...|+.|+..|.++..|-.|.+..+ ...+|+|..|.+.|.+...|..|+..|.. -|+|+
T Consensus 190 ~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn--~ykCp 267 (467)
T KOG3608|consen 190 GNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN--CYKCP 267 (467)
T ss_pred ccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh--ccccc
Confidence 999999999999999999999999999999999999987544 45689999999999999999999998875 59999
Q ss_pred CCCCcCCCHHHHHHHHHh-cCCCCCcccCccccccCCHHHHHHHHHHhCCCCCccCCc--cccccCChhhHHHHHhhhc-
Q psy13389 267 MCPKCFTRKDDLNRHMRN-HDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSI--CTESFSQKSNLYIHLKLQH- 342 (617)
Q Consensus 267 ~C~~~f~~~~~L~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~- 342 (617)
.|+.+....++|..|++. |...+||+|+.|++.|.+.+.|+.|+.+|+ +..|+|.. |..+|++..+|++|++.+|
T Consensus 268 lCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhE 346 (467)
T KOG3608|consen 268 LCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHE 346 (467)
T ss_pred ccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhcc
Confidence 999999999999999985 778899999999999999999999999988 67899998 9999999999999999888
Q ss_pred CCC--CccCCCCCCCccCChhHHHHHhhhccCCC
Q psy13389 343 GVN--PFKCDVCPNETFEKETQLSLHMRTVHGVK 374 (617)
Q Consensus 343 ~~~--~~~C~~C~~~~f~~~~~l~~H~~~h~~~~ 374 (617)
|.+ +|+|-.|++ .|++-.+|..|++..++-+
T Consensus 347 g~np~~Y~CH~Cdr-~ft~G~~L~~HL~kkH~f~ 379 (467)
T KOG3608|consen 347 GNNPILYACHCCDR-FFTSGKSLSAHLMKKHGFR 379 (467)
T ss_pred CCCCCceeeecchh-hhccchhHHHHHHHhhccc
Confidence 433 699999998 8999999999988776543
No 4
>KOG3608|consensus
Probab=99.95 E-value=3e-27 Score=219.33 Aligned_cols=237 Identities=27% Similarity=0.480 Sum_probs=200.6
Q ss_pred ccC--CCCccccCChhHHHHHHhhccC------------C-Cceec--CCCCCcCCCHHHHHHHHHhcCCCCCcccCccc
Q psy13389 235 FLC--SMCAKCFSRKDDLNRHMKIHEG------------S-KRYLC--TMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCF 297 (617)
Q Consensus 235 ~~C--~~C~~~f~~~~~L~~H~~~h~~------------~-~~~~C--~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~ 297 (617)
|.| ..|+..|.+...|..|+..|.- + ..+.| ..|.+.|.++..|+.|++.|+++|...|+.||
T Consensus 135 f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg 214 (467)
T KOG3608|consen 135 FRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCG 214 (467)
T ss_pred hccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHH
Confidence 666 4599999999999888876631 1 12455 46889999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHhC--CCCCccCCccccccCChhhHHHHHhhhcCCCCccCCCCCCCccCChhHHHHHhh-hccCCC
Q psy13389 298 ESFTQKALLNIHLRIHT--NSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMR-TVHGVK 374 (617)
Q Consensus 298 ~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~f~~~~~l~~H~~-~h~~~~ 374 (617)
..|.++..|-.|++.-+ +..+|+|..|.|.|.+...|+.|+..|- +-|+|+.|+. +-...+.|..|++ .|...+
T Consensus 215 ~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv--n~ykCplCdm-tc~~~ssL~~H~r~rHs~dk 291 (467)
T KOG3608|consen 215 ELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV--NCYKCPLCDM-TCSSASSLTTHIRYRHSKDK 291 (467)
T ss_pred HHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh--hccccccccc-CCCChHHHHHHHHhhhccCC
Confidence 99999999999987654 4568999999999999999999998874 5799999987 8889999999998 567789
Q ss_pred CcccCccCCcCCCchhHHHHhhhhcCCCcccccc--ccccccChHhHHHHHHcCC------CCCCccccccccCchhHHH
Q psy13389 375 PFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDI--CFKLFTKKSNLRTHIKTHE------PIPCDKCPEIFEKKTDLQE 446 (617)
Q Consensus 375 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~------~~~C~~C~~~f~~~~~l~~ 446 (617)
||+|+.|++.|.+.+.|.+|..+|+ +-.|.|.. |.++|.+...|++|++.++ +|.|..|.+.|++-.+|..
T Consensus 292 pfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~ 370 (467)
T KOG3608|consen 292 PFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSA 370 (467)
T ss_pred CccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHH
Confidence 9999999999999999999999887 67799999 9999999999999998764 7999999999999999999
Q ss_pred HHhhhCCCCccccccccCCCCCCCCcccccCccccccccc
Q psy13389 447 HVDKCHNLHEEDEEEGLDEFDAPKEKSFNCSKCLNIVRIP 486 (617)
Q Consensus 447 H~~~~H~~~~~~~~~~~~~~~~~~~k~f~C~~C~~~f~~~ 486 (617)
|+.+.|..... .|-+.|.=.+|..+|-+-
T Consensus 371 HL~kkH~f~~P-----------sGh~RFtYk~~edG~mRL 399 (467)
T KOG3608|consen 371 HLMKKHGFRLP-----------SGHKRFTYKVDEDGFMRL 399 (467)
T ss_pred HHHHhhcccCC-----------CCCCceeeeeccCceeee
Confidence 99999974222 356666666666666553
No 5
>KOG2462|consensus
Probab=99.93 E-value=3.5e-27 Score=214.60 Aligned_cols=131 Identities=29% Similarity=0.645 Sum_probs=70.8
Q ss_pred cccCccccccCCHHHHHHHHHHhCC---CCCccCCccccccCChhhHHHHHhhhcCCCCccCCCCCCCccCChhHHHHHh
Q psy13389 291 FHCSVCFESFTQKALLNIHLRIHTN---SKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHM 367 (617)
Q Consensus 291 ~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~f~~~~~l~~H~ 367 (617)
|+|+.||+.+.+..+|.+|.++|-. .+.+.|++|++.|.+...|+.|+++|. -+++|.+||| .|.+...|+-|+
T Consensus 131 ~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGK-aFSRPWLLQGHi 207 (279)
T KOG2462|consen 131 YKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGK-AFSRPWLLQGHI 207 (279)
T ss_pred eeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccc-cccchHHhhccc
Confidence 3333344444443344444333321 234455555555555555555555543 3455555555 555556666666
Q ss_pred hhccCCCCcccCccCCcCCCchhHHHHhhhhcCCCccccccccccccChHhHHHHHH
Q psy13389 368 RTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIK 424 (617)
Q Consensus 368 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~ 424 (617)
|+|+|+|||.|+.|++.|..+++|+.||++|.+.|+|+|..|+|+|..++.|.+|..
T Consensus 208 RTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E 264 (279)
T KOG2462|consen 208 RTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE 264 (279)
T ss_pred ccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence 666666666666666666666666666666666666666666666666666665554
No 6
>KOG2462|consensus
Probab=99.93 E-value=8.3e-27 Score=212.13 Aligned_cols=130 Identities=34% Similarity=0.704 Sum_probs=60.3
Q ss_pred cccCCCcccccCchhhhhhhhhhcC---CCcccCCCCccccCChhHHHHHHhhccCCCceecCCCCCcCCCHHHHHHHHH
Q psy13389 207 FQCNVCYICFTNKSDLNRHSRIHNG---IKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMR 283 (617)
Q Consensus 207 ~~C~~C~~~f~~~~~L~~H~~~h~~---~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~ 283 (617)
|+|+.|++.+.+.++|.+|.++|-. .+.+.|++|++.|.+...|..|+++|. -+++|.+|||.|.....|+-|+|
T Consensus 131 ~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiR 208 (279)
T KOG2462|consen 131 YKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIR 208 (279)
T ss_pred eeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccc
Confidence 4444444444444444444444422 233444444444444444444444443 23444444444444444444444
Q ss_pred hcCCCCCcccCccccccCCHHHHHHHHHHhCCCCCccCCccccccCChhhHHHHH
Q psy13389 284 NHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHL 338 (617)
Q Consensus 284 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~ 338 (617)
+|+|+|||.|+.|++.|..+++|+.|+++|.+.|+|+|..|+|+|..++.|.+|.
T Consensus 209 THTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ 263 (279)
T KOG2462|consen 209 THTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHS 263 (279)
T ss_pred cccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhh
Confidence 4444444444444444444444444444444444444444444444444444443
No 7
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=99.93 E-value=1.4e-26 Score=225.86 Aligned_cols=132 Identities=36% Similarity=0.569 Sum_probs=119.0
Q ss_pred cchhHHHHHhhhhcCCCCCcccccccccccccccceeeeccCCccchhhhhcccCccccccccccccccccchhhhhcCc
Q psy13389 485 IPVEIKSLVEKLTSEGVPAVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHS 564 (617)
Q Consensus 485 ~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~~ 564 (617)
+++...+........++..+..+.++++++.+||||+|||+|++|+|.++||+| |+||++||++.|+|+||+++++.++
T Consensus 164 ~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~Pil~~~~l~~-G~hI~aiGad~p~k~Eld~e~l~ra 242 (330)
T COG2423 164 DPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTEPVLKAEWLKP-GTHINAIGADAPGKRELDPEVLARA 242 (330)
T ss_pred CHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCCCeecHhhcCC-CcEEEecCCCCcccccCCHHHHHhc
Confidence 345555555565566666678899999999999999999999999999999999 9999999999999999999999999
Q ss_pred -eEEEecchhhhcchhhhhhcc------ccccccccccccccccc-cCCCCceeeeccCCC
Q psy13389 565 -SIFFDSEAAARGELKGLYEQV------PANMVGEVGGLIAANLT-RDARYPLTVFHSMGV 617 (617)
Q Consensus 565 -~~~~d~~~~~~~e~~~~~~~~------~~~~~~~l~~~~~~~~~-~~~~~~~~~f~~~G~ 617 (617)
+||||+++|++.|.|++.+++ ++.++++||+|+.|..+ |+++++|||||||||
T Consensus 243 ~~vvvD~~~q~~~e~Gei~~~~~~g~~~~~~~~~eLg~vv~g~~~gR~~~~eITlf~svG~ 303 (330)
T COG2423 243 DRVVVDSLEQTRKESGEISQAVAAGVLSPDAIVAELGDVVAGKIPGRESDDEITLFDSVGL 303 (330)
T ss_pred CeEEEcCHHHhhccccchhhHhhcccCCcccchhHHHHHHcCCCCCCCCCCceEEEeCCCc
Confidence 899999999998999998874 66778999999999999 999999999999997
No 8
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=99.89 E-value=3.2e-24 Score=210.91 Aligned_cols=128 Identities=21% Similarity=0.329 Sum_probs=108.3
Q ss_pred hHHHHHhhhhcCCCCCcccccccccccccccceeeeccCCccchhhhhcccCccccccccccccccccchhhhhcCce-E
Q psy13389 488 EIKSLVEKLTSEGVPAVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHSS-I 566 (617)
Q Consensus 488 ~l~~H~~~~~~~~~~~~~~~~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~~~-~ 566 (617)
.+......+....+..+.+++++++++.+||||+|||+|++|+|+.+||+| |+||++||++.|+|+|||++++.+++ |
T Consensus 154 ~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~P~~~~~~l~p-g~hV~aiGs~~p~~~El~~~~l~~a~~v 232 (301)
T PRK06407 154 HARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDTPIFNRKYLGD-EYHVNLAGSNYPNRREAEHSVLNDADIV 232 (301)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCcEecHHHcCC-CceEEecCCCCCCcccCCHHHHHhCCEE
Confidence 333344444333344577789999999999999999999999999999999 99999999999999999999999995 8
Q ss_pred EEecchhhhcchhhhhhccc-cccccccccccccccccCCCCceeeeccCCC
Q psy13389 567 FFDSEAAARGELKGLYEQVP-ANMVGEVGGLIAANLTRDARYPLTVFHSMGV 617 (617)
Q Consensus 567 ~~d~~~~~~~e~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~f~~~G~ 617 (617)
|||+++|++.|+|+++.++. +..++|||||+. ...|.++++|||||||||
T Consensus 233 ~vD~~~~~~~e~Ge~~~~~~~g~~~~eLgev~~-~~gr~~~~~itvfksvG~ 283 (301)
T PRK06407 233 VTEHMEQSLRESSEISEYVKKGGKPVELKDFAK-NNGSYSGLRRTVFKSMGI 283 (301)
T ss_pred EECCHHHHHHhccchhhHhhcCCceeeHHHHhc-CCCCCCCCCeEEEeCCch
Confidence 99999999999999987753 345679999996 334888899999999997
No 9
>PRK06823 ornithine cyclodeaminase; Validated
Probab=99.89 E-value=1.1e-23 Score=207.96 Aligned_cols=114 Identities=28% Similarity=0.368 Sum_probs=101.6
Q ss_pred CCcccccccccccccccceeeeccCCccchhhhhcccCccccccccccccccccchhhhhcCce-EEEecchhhhcchhh
Q psy13389 502 PAVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHSS-IFFDSEAAARGELKG 580 (617)
Q Consensus 502 ~~~~~~~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~~~-~~~d~~~~~~~e~~~ 580 (617)
..+.++.++++++++||||+|||+|++|+|+.+||+| |+||++||++.|+|+|||++++.+++ ||||+++|+. |+|+
T Consensus 178 ~~v~~~~~~~~av~~ADIV~taT~s~~P~~~~~~l~~-G~hi~~iGs~~p~~~Eld~~~l~~a~~vvvD~~~~~~-~~Ge 255 (315)
T PRK06823 178 FAVNTTLDAAEVAHAANLIVTTTPSREPLLQAEDIQP-GTHITAVGADSPGKQELDAELVARADKILVDSIAQCT-DFGE 255 (315)
T ss_pred CcEEEECCHHHHhcCCCEEEEecCCCCceeCHHHcCC-CcEEEecCCCCcccccCCHHHHhhCCEEEECCHHHHH-HcCc
Confidence 4466678999999999999999999999999999999 99999999999999999999999995 9999999986 5788
Q ss_pred hhhcc-----ccccccccccccccccc-cCCCCceeeeccCCC
Q psy13389 581 LYEQV-----PANMVGEVGGLIAANLT-RDARYPLTVFHSMGV 617 (617)
Q Consensus 581 ~~~~~-----~~~~~~~l~~~~~~~~~-~~~~~~~~~f~~~G~ 617 (617)
++.++ .++.+.+|||||.|+.+ |.++++|||||||||
T Consensus 256 ~~~~~~~g~~~~~~i~eLgel~~g~~~gr~~~~~itvfksvG~ 298 (315)
T PRK06823 256 VSHAFKAGLLAHHNLTELGLALAQGIPFRENDQQITLADLTGV 298 (315)
T ss_pred hhhHHHcCCCChhhhhHHHHHHcCCCCCCCCCCCEEEEcCCCc
Confidence 77553 23345699999999987 999999999999997
No 10
>KOG3623|consensus
Probab=99.88 E-value=1.6e-23 Score=211.53 Aligned_cols=105 Identities=30% Similarity=0.689 Sum_probs=77.3
Q ss_pred eeccccccccCCHHHHHHHHHhcC--CCcceecCccccccCChHHHHHHHHHccC-------------CCCcccCcCccc
Q psy13389 123 FRCEQCRFDFYVKREYNRHMKIHD--GVKVFLCSVCSKTFTDKVKFNRHMRAHEG-------------IKPFQCSVCSES 187 (617)
Q Consensus 123 ~~C~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-------------~~~~~C~~C~~~ 187 (617)
..|++|++.+.....|+.|++.-+ .+..|.|..|..+|..+..|.+||..|.. .+.|+|..|++.
T Consensus 211 ltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKA 290 (1007)
T KOG3623|consen 211 LTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKA 290 (1007)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchh
Confidence 567777777777777777765432 34457777777777777777777777643 245788888888
Q ss_pred cCChHHHHHHHHhccCCCCcccCCCcccccCchhhhhhhh
Q psy13389 188 FTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSR 227 (617)
Q Consensus 188 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~ 227 (617)
|..+..|+.|+|+|.|++||.|+.|+++|....++..|+.
T Consensus 291 FKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmS 330 (1007)
T KOG3623|consen 291 FKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMS 330 (1007)
T ss_pred hhhHHHHHhhheeecCCCCcCCcccccccccCCccccccc
Confidence 8888888888888888888888888888877777777763
No 11
>KOG3623|consensus
Probab=99.88 E-value=2.1e-23 Score=210.63 Aligned_cols=78 Identities=32% Similarity=0.695 Sum_probs=75.4
Q ss_pred CcccCccccccCCHHHHHHHHHHhCCCCCccCCccccccCChhhHHHHHhhhcCCCCccCCCCCCCccCChhHHHHHhh
Q psy13389 290 PFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMR 368 (617)
Q Consensus 290 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~f~~~~~l~~H~~ 368 (617)
+|.|+.|+|.|...+.|.+|..-|+|.+||+|.+|.|.|+.+-.|..|+|.|.|++||+|+.|+| .|.....+..||.
T Consensus 894 myaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClK-RFSHSGSYSQHMN 971 (1007)
T KOG3623|consen 894 MYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLK-RFSHSGSYSQHMN 971 (1007)
T ss_pred cchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhh-hcccccchHhhhc
Confidence 39999999999999999999999999999999999999999999999999999999999999999 8999999999985
No 12
>PRK07589 ornithine cyclodeaminase; Validated
Probab=99.88 E-value=1.8e-23 Score=207.68 Aligned_cols=114 Identities=25% Similarity=0.341 Sum_probs=102.8
Q ss_pred CCcccccccccccccccceeeeccCCc--cchhhhhcccCccccccccccccccccchhhhhcCceEEEecchhhhcchh
Q psy13389 502 PAVQAYEHGEDAARDADILVTATYSSV--PVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHSSIFFDSEAAARGELK 579 (617)
Q Consensus 502 ~~~~~~~~~~~~~~~adiv~~~t~s~~--p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~~~~~~d~~~~~~~e~~ 579 (617)
..+.+++++++++.+||||+|||+|++ |||+.+||+| |+||++||++.|+|+|||++++.+++||||+++++..+ |
T Consensus 179 ~~v~~~~~~~~av~~ADIIvtaT~S~~~~Pvl~~~~lkp-G~hV~aIGs~~p~~~Eld~~~l~~a~v~vD~~~~~~~~-G 256 (346)
T PRK07589 179 LRIVACRSVAEAVEGADIITTVTADKTNATILTDDMVEP-GMHINAVGGDCPGKTELHPDILRRARVFVEYEPQTRIE-G 256 (346)
T ss_pred CcEEEeCCHHHHHhcCCEEEEecCCCCCCceecHHHcCC-CcEEEecCCCCCCcccCCHHHHhcCEEEECCHHHHhhc-C
Confidence 346677899999999999999999987 9999999999 99999999999999999999999999999999998866 8
Q ss_pred hhhhccccccccccccccccccc-cCCCCceeeeccCCC
Q psy13389 580 GLYEQVPANMVGEVGGLIAANLT-RDARYPLTVFHSMGV 617 (617)
Q Consensus 580 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~f~~~G~ 617 (617)
++....++.+++|||||+.|+.+ |.++++|||||||||
T Consensus 257 el~~~~~~~~~~eLgeli~g~~~gR~~~~~itvFksvG~ 295 (346)
T PRK07589 257 EIQQLPADFPVTELWRVLTGEAPGRESADQITLFDSVGF 295 (346)
T ss_pred cccccccccccccHHHHhCCCCCCCCCCCCcEEEeCCCh
Confidence 76544455667899999999977 999999999999997
No 13
>KOG3007|consensus
Probab=99.87 E-value=3.1e-23 Score=187.31 Aligned_cols=116 Identities=28% Similarity=0.359 Sum_probs=104.9
Q ss_pred CCCcccccccccccccccceeeeccCCccchhhhhcccCccccccccccccccccchhhhhcCceEEEecchhhhcchhh
Q psy13389 501 VPAVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHSSIFFDSEAAARGELKG 580 (617)
Q Consensus 501 ~~~~~~~~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~~~~~~d~~~~~~~e~~~ 580 (617)
...++..++++.|+..+|||++||+|++|.+-++||+| |+||.+||++.|.|+|.|+++++.|.|+||+++.++.|+|+
T Consensus 192 qie~~~~qsl~~aV~~sDIIs~atlstePilfgewlkp-gthIdlVGsf~p~mhEcDdelIq~a~vfVDsre~aL~EsGe 270 (333)
T KOG3007|consen 192 QIELNQYQSLNGAVSNSDIISGATLSTEPILFGEWLKP-GTHIDLVGSFKPVMHECDDELIQSACVFVDSREHALLESGE 270 (333)
T ss_pred EEEEEehhhhhcccccCceEEeccccCCceeeeeeecC-CceEeeeccCCchHHHHhHHHhhhheEEEecchHHhhhhhh
Confidence 34456778999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hhhcc---ccccccccccccccccc-c--CCCCc-eeeeccCCC
Q psy13389 581 LYEQV---PANMVGEVGGLIAANLT-R--DARYP-LTVFHSMGV 617 (617)
Q Consensus 581 ~~~~~---~~~~~~~l~~~~~~~~~-~--~~~~~-~~~f~~~G~ 617 (617)
++.+. +..+.++|+|++.|.++ | .+..+ ||+|||||+
T Consensus 271 ll~~~~~g~neI~a~l~dlikn~k~gr~~K~c~~~iTlfKsvG~ 314 (333)
T KOG3007|consen 271 LLDSNIAGHNEIEAGLLDLIKNTKLGRNEKGCKRTITLFKSVGL 314 (333)
T ss_pred hccccccCHHHHHhHHHHHhcCCcccccccCchhheehhhhhch
Confidence 98663 45678999999999987 5 44455 999999996
No 14
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=99.86 E-value=1.4e-22 Score=201.20 Aligned_cols=127 Identities=35% Similarity=0.517 Sum_probs=93.7
Q ss_pred hHHHHHhhhhcCCCCCcccccccccccccccceeeeccCCc--cchhhhhcccCccccccccccccccccchhhhhcCce
Q psy13389 488 EIKSLVEKLTSEGVPAVQAYEHGEDAARDADILVTATYSSV--PVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHSS 565 (617)
Q Consensus 488 ~l~~H~~~~~~~~~~~~~~~~~~~~~~~~adiv~~~t~s~~--p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~~~ 565 (617)
.+......... .+..+..+.++++++++||||+|||+|++ |+|+.+||+| |+||++||++.|+|+|||++++.+++
T Consensus 165 ~~~~~~~~~~~-~~~~v~~~~~~~~av~~aDii~taT~s~~~~P~~~~~~l~~-g~hi~~iGs~~~~~~El~~~~~~~a~ 242 (313)
T PF02423_consen 165 RAEAFAARLRD-LGVPVVAVDSAEEAVRGADIIVTATPSTTPAPVFDAEWLKP-GTHINAIGSYTPGMRELDDELLKRAD 242 (313)
T ss_dssp HHHHHHHHHHC-CCTCEEEESSHHHHHTTSSEEEE----SSEEESB-GGGS-T-T-EEEE-S-SSTTBESB-HHHHHCSE
T ss_pred HHHHHHHhhcc-ccccceeccchhhhcccCCEEEEccCCCCCCccccHHHcCC-CcEEEEecCCCCchhhcCHHHhccCC
Confidence 33444444443 25567788999999999999999999999 9999999999 99999999999999999999999999
Q ss_pred EEEecchhhhcchhhhhhccccccccccccccccccc-cCCCCceeeeccCCC
Q psy13389 566 IFFDSEAAARGELKGLYEQVPANMVGEVGGLIAANLT-RDARYPLTVFHSMGV 617 (617)
Q Consensus 566 ~~~d~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~f~~~G~ 617 (617)
+|||+++++ .|+|+++....++.++|||||+.|+.+ |.+++++||||||||
T Consensus 243 ~~vd~~~~~-~~~Ge~~~~~~~~~~~eLgev~~g~~~gr~~~~~~tvf~svG~ 294 (313)
T PF02423_consen 243 IVVDSEAQA-REAGELIQLSDEDIVAELGEVLTGKKPGRESDEEITVFKSVGL 294 (313)
T ss_dssp EEESCHHHH-HHCCHHHCSTTCHCEEEHHHHHTTSS-S--STTSEEEEE----
T ss_pred EEEccHHHH-hhcCcceecchhhceeEHHHHhcCCCCCCCCCCCeEEEECCCc
Confidence 999877766 567888775567788999999999987 999999999999997
No 15
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=99.86 E-value=1.4e-22 Score=202.35 Aligned_cols=113 Identities=31% Similarity=0.479 Sum_probs=101.6
Q ss_pred CcccccccccccccccceeeeccCCccchhhhhcccCccccccccccccccccchhhhhcCceEEEecchhhhcchhhhh
Q psy13389 503 AVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHSSIFFDSEAAARGELKGLY 582 (617)
Q Consensus 503 ~~~~~~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~~~~~~d~~~~~~~e~~~~~ 582 (617)
.+.++.+.++++++||||+|||+|.+|++..+|++| |+||++||++.|+++|||++++.+++||||+++|++. +|++.
T Consensus 179 ~v~~~~~~~eav~~aDiVitaT~s~~P~~~~~~l~~-g~~v~~vGs~~p~~~Eld~~~l~~a~v~vD~~~~~~~-~ge~~ 256 (325)
T TIGR02371 179 PVRAATDPREAVEGCDILVTTTPSRKPVVKADWVSE-GTHINAIGADAPGKQELDPEILKNAKIFVDDLEQATH-SGEIN 256 (325)
T ss_pred cEEEeCCHHHHhccCCEEEEecCCCCcEecHHHcCC-CCEEEecCCCCcccccCCHHHHhcCcEEECCHHHHHh-cCchh
Confidence 356678999999999999999999999999999999 9999999999999999999999999999999999884 78776
Q ss_pred hccc------cccccccccccccccc-cCCCCceeeeccCCC
Q psy13389 583 EQVP------ANMVGEVGGLIAANLT-RDARYPLTVFHSMGV 617 (617)
Q Consensus 583 ~~~~------~~~~~~l~~~~~~~~~-~~~~~~~~~f~~~G~ 617 (617)
.+.+ +.+.+||||||.|+.+ |.++++|||||||||
T Consensus 257 ~a~~~g~~~~~~~~~eLgev~~g~~~gr~~~~~itvfksvG~ 298 (325)
T TIGR02371 257 VPISKGIIRVDDLHASLGEVITGLKEGRTSPEEITIFDSTGL 298 (325)
T ss_pred hHHHcCCCChHhhhhHHHHHHcCCCCCCCCCCceEEEeCCCc
Confidence 5532 2345699999999977 999999999999997
No 16
>PRK07340 ornithine cyclodeaminase; Validated
Probab=99.85 E-value=3.6e-22 Score=197.47 Aligned_cols=107 Identities=27% Similarity=0.264 Sum_probs=96.0
Q ss_pred ccccccccccccceeeeccCCccchhhhhcccCccccccccccccccccchhhhhcCceEEEecchhhhcchhhhhhcc-
Q psy13389 507 YEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHSSIFFDSEAAARGELKGLYEQV- 585 (617)
Q Consensus 507 ~~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~~~~~~d~~~~~~~e~~~~~~~~- 585 (617)
+.+.++++.+||||+|||+|++|+|.. |++| |+||++||++.|+|+|||++++.+++||||++++++.|+|+++.++
T Consensus 179 ~~~~~~av~~aDiVitaT~s~~Pl~~~-~~~~-g~hi~~iGs~~p~~~El~~~~~~~a~v~vD~~~~~~~e~Ge~~~a~~ 256 (304)
T PRK07340 179 PLDGEAIPEAVDLVVTATTSRTPVYPE-AARA-GRLVVAVGAFTPDMAELAPRTVRGSRLYVDDPAGARHEAGDLIQAGV 256 (304)
T ss_pred ECCHHHHhhcCCEEEEccCCCCceeCc-cCCC-CCEEEecCCCCCCcccCCHHHHhhCeEEEcCHHHHHHhccchhhcCC
Confidence 467888999999999999999999987 9999 9999999999999999999999999999999999999999998874
Q ss_pred ccccccccccccccccccCCCCceeeeccCCC
Q psy13389 586 PANMVGEVGGLIAANLTRDARYPLTVFHSMGV 617 (617)
Q Consensus 586 ~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~G~ 617 (617)
.++.+.||||||.|+.+ .++++||||||||
T Consensus 257 ~~~~i~eLg~vi~g~~~--~~~~~tvfksvG~ 286 (304)
T PRK07340 257 DWSRVRPLADALRGAWP--ARGGPVLFKSVGC 286 (304)
T ss_pred CccccccHHHHhcCCCC--CCCCcEEEECCCc
Confidence 34456799999999864 2346899999997
No 17
>PRK06046 alanine dehydrogenase; Validated
Probab=99.84 E-value=6.9e-22 Score=197.96 Aligned_cols=111 Identities=33% Similarity=0.493 Sum_probs=98.5
Q ss_pred cccccccccccccccceeeeccCCccchhhhhcccCccccccccccccccccchhhhhcCceEEEecchhhhcchhhhhh
Q psy13389 504 VQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHSSIFFDSEAAARGELKGLYE 583 (617)
Q Consensus 504 ~~~~~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~~~~~~d~~~~~~~e~~~~~~ 583 (617)
+..+.+.++++. +|||++|||+.+|+|..+|++| |+||++||++.|+++|||++++.+++||||++++++ ++|++..
T Consensus 182 v~~~~~~~~~l~-aDiVv~aTps~~P~~~~~~l~~-g~hV~~iGs~~p~~~El~~~~~~~a~vvvD~~~~~~-~~ge~~~ 258 (326)
T PRK06046 182 VTVAEDIEEACD-CDILVTTTPSRKPVVKAEWIKE-GTHINAIGADAPGKQELDPEILLRAKVVVDDMEQAL-HSGEINV 258 (326)
T ss_pred EEEeCCHHHHhh-CCEEEEecCCCCcEecHHHcCC-CCEEEecCCCCCccccCCHHHHhCCcEEECCHHHHH-HcCchhh
Confidence 455678888887 9999999999999999999999 999999999999999999999999999999999988 5788755
Q ss_pred cc------ccccccccccccccccc-cCCCCceeeeccCCC
Q psy13389 584 QV------PANMVGEVGGLIAANLT-RDARYPLTVFHSMGV 617 (617)
Q Consensus 584 ~~------~~~~~~~l~~~~~~~~~-~~~~~~~~~f~~~G~ 617 (617)
++ .++++++||||+.|+.+ |.++++|||||||||
T Consensus 259 ~~~~g~~~~~~~~~elgell~g~~~gr~~~~~itvfksvG~ 299 (326)
T PRK06046 259 PLSKGIIREEDIYATLGEVIAGKKPGRESDEEITIFDSTGL 299 (326)
T ss_pred HHHcCCCChhhhhchHHHHhCCCCCCCCCCCceEEEeCCCc
Confidence 42 22345799999999977 888999999999997
No 18
>PRK08618 ornithine cyclodeaminase; Validated
Probab=99.83 E-value=1.6e-21 Score=195.37 Aligned_cols=112 Identities=32% Similarity=0.511 Sum_probs=100.7
Q ss_pred cccccccccccccccceeeeccCCccchhhhhcccCccccccccccccccccchhhhhcCc-eEEEecchhhhcchhhhh
Q psy13389 504 VQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHS-SIFFDSEAAARGELKGLY 582 (617)
Q Consensus 504 ~~~~~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~~-~~~~d~~~~~~~e~~~~~ 582 (617)
+....+.++++.++|||++||+|..|++. +|++| |+||++||++.|+++|+|++++.++ .||||++++++.|+|+++
T Consensus 180 ~~~~~~~~~~~~~aDiVi~aT~s~~p~i~-~~l~~-G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~~~~~~~e~G~~~ 257 (325)
T PRK08618 180 IYVVNSADEAIEEADIIVTVTNAKTPVFS-EKLKK-GVHINAVGSFMPDMQELPSEAIARANKVVVESKEAALEETGDLI 257 (325)
T ss_pred EEEeCCHHHHHhcCCEEEEccCCCCcchH-HhcCC-CcEEEecCCCCcccccCCHHHHhhCCEEEECCHHHHHHhcCCcc
Confidence 44567788899999999999999999999 99999 9999999999999999999999998 499999999999999987
Q ss_pred hccc------cccccccccccccccc-cCCCCceeeeccCCC
Q psy13389 583 EQVP------ANMVGEVGGLIAANLT-RDARYPLTVFHSMGV 617 (617)
Q Consensus 583 ~~~~------~~~~~~l~~~~~~~~~-~~~~~~~~~f~~~G~ 617 (617)
.++. +.+.++||||+.|..+ |.++++||||||+||
T Consensus 258 ~~~~~~~~~~~~i~~eLgel~~g~~~gr~~~~~itvf~s~G~ 299 (325)
T PRK08618 258 VPLKEGLISKDDIHGELGQIISGEIAGRESDEEITVFKSVGL 299 (325)
T ss_pred cHHHcCCCChhhhhhhHHHHhcCCCCCCCCCCCeEEEeCCCc
Confidence 6532 2344799999999987 988999999999997
No 19
>PRK06141 ornithine cyclodeaminase; Validated
Probab=99.79 E-value=3.6e-20 Score=184.54 Aligned_cols=113 Identities=29% Similarity=0.444 Sum_probs=102.5
Q ss_pred cccccccccccccccceeeeccCCccchhhhhcccCccccccccccccccccchhhhhcCceEEEecchhhhcchhhhhh
Q psy13389 504 VQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHSSIFFDSEAAARGELKGLYE 583 (617)
Q Consensus 504 ~~~~~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~~~~~~d~~~~~~~e~~~~~~ 583 (617)
+.++.+.++++.+||||+++|+|.+|++..+|++| |+||+++|++.|+++||+++++.++.+|||++++++.|+|+++.
T Consensus 177 ~~~~~~~~~av~~aDIVi~aT~s~~pvl~~~~l~~-g~~i~~ig~~~~~~~El~~~~~~~a~~~vD~~~~~~~e~ge~~~ 255 (314)
T PRK06141 177 AEVVTDLEAAVRQADIISCATLSTEPLVRGEWLKP-GTHLDLVGNFTPDMRECDDEAIRRASVYVDTRAGALAEAGDLLI 255 (314)
T ss_pred eEEeCCHHHHHhcCCEEEEeeCCCCCEecHHHcCC-CCEEEeeCCCCcccccCCHHHHhcCcEEEcCHHHHHHhcCchhH
Confidence 55667888899999999999999999999999999 99999999999999999999999999999999999999999876
Q ss_pred cc-----cc-ccccccccccccccc-cCCCCceeeeccCCC
Q psy13389 584 QV-----PA-NMVGEVGGLIAANLT-RDARYPLTVFHSMGV 617 (617)
Q Consensus 584 ~~-----~~-~~~~~l~~~~~~~~~-~~~~~~~~~f~~~G~ 617 (617)
+. .+ ++++|||||+.|+.+ |.++++||||+|+||
T Consensus 256 a~~~g~~~~~~i~~elg~vl~g~~~gr~~~~~itvf~s~G~ 296 (314)
T PRK06141 256 PIAEGVFSPDDIRGELAELCRGQHKGRTSDDEITLFKSVGT 296 (314)
T ss_pred HHHcCCCChHHhhhhHHHHhCCCCCCCCCCCCeEEEECCCc
Confidence 63 22 334799999999987 999999999999997
No 20
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=99.79 E-value=3.8e-20 Score=185.42 Aligned_cols=134 Identities=25% Similarity=0.321 Sum_probs=105.7
Q ss_pred cccccccchhHHHHHhhhhcCCCCCcccccccccccccccceeeeccCCccchhhhhcccCccccccccccccccccchh
Q psy13389 479 CLNIVRIPVEIKSLVEKLTSEGVPAVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDA 558 (617)
Q Consensus 479 C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~ 558 (617)
+++.......+..... ...+..+....++++++.+||||+|||+|.+|+|..+|++| |+||++||++.|+++|+++
T Consensus 160 ~~R~~~~a~~~a~~~~---~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~p~i~~~~l~~-g~~i~~vg~~~p~~rEld~ 235 (326)
T TIGR02992 160 WARDSAKAEALALQLS---SLLGIDVTAATDPRAAMSGADIIVTTTPSETPILHAEWLEP-GQHVTAMGSDAEHKNEIDP 235 (326)
T ss_pred ECCCHHHHHHHHHHHH---hhcCceEEEeCCHHHHhccCCEEEEecCCCCcEecHHHcCC-CcEEEeeCCCCCCceecCH
Confidence 4444444444443332 12123345567888999999999999999999999999999 9999999999999999999
Q ss_pred hhhcCce-EEEecchhhhcchhhhhhcc------ccccccccccccccccc-cCCCCceeeeccCCC
Q psy13389 559 AIYSHSS-IFFDSEAAARGELKGLYEQV------PANMVGEVGGLIAANLT-RDARYPLTVFHSMGV 617 (617)
Q Consensus 559 ~~~~~~~-~~~d~~~~~~~e~~~~~~~~------~~~~~~~l~~~~~~~~~-~~~~~~~~~f~~~G~ 617 (617)
+++.++. +++|+++++. |+|++..++ +++++++||||+.|+.+ |.++++||||||+||
T Consensus 236 ~~l~~a~~~vvD~~~~~~-~~g~~~~~~~~g~~~~~~~~~elg~v~~g~~~gr~~~~~itvf~s~G~ 301 (326)
T TIGR02992 236 AVIAKADHYVADRLSQTA-TLGELHHAIAAGLAAALQVFAELGQVIAGDRPGRRSPDDITIADLTGT 301 (326)
T ss_pred HHHhccCEEEcCCHHHHH-hcCchHHHHHcCCCChhhccccHHHHhcCCCCCCCCCCCEEEEeCCCc
Confidence 9999998 5568888874 567665442 23456899999999987 999999999999997
No 21
>PRK08291 ectoine utilization protein EutC; Validated
Probab=99.78 E-value=9.7e-20 Score=183.00 Aligned_cols=113 Identities=28% Similarity=0.456 Sum_probs=100.0
Q ss_pred CcccccccccccccccceeeeccCCccchhhhhcccCccccccccccccccccchhhhhcCce-EEEecchhhhcchhhh
Q psy13389 503 AVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHSS-IFFDSEAAARGELKGL 581 (617)
Q Consensus 503 ~~~~~~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~~~-~~~d~~~~~~~e~~~~ 581 (617)
.+....+.++++.+||||++||++.+|++..+|+++ |+||++||++.|+++|++++++.++. |+||+++++. |+|++
T Consensus 184 ~v~~~~d~~~al~~aDiVi~aT~s~~p~i~~~~l~~-g~~v~~vg~d~~~~rEld~~~l~~a~~v~vD~~~~~~-~~g~~ 261 (330)
T PRK08291 184 PVTVARDVHEAVAGADIIVTTTPSEEPILKAEWLHP-GLHVTAMGSDAEHKNEIAPAVFAAADLYVCDRLSQTR-RLGEL 261 (330)
T ss_pred eEEEeCCHHHHHccCCEEEEeeCCCCcEecHHHcCC-CceEEeeCCCCCCcccCCHHHHhhCCEEEeCCHHHHH-Hhccc
Confidence 345567888999999999999999999999999999 99999999999999999999999997 8899999986 67887
Q ss_pred hhcc------ccccccccccccccccc-cCCCCceeeeccCCC
Q psy13389 582 YEQV------PANMVGEVGGLIAANLT-RDARYPLTVFHSMGV 617 (617)
Q Consensus 582 ~~~~------~~~~~~~l~~~~~~~~~-~~~~~~~~~f~~~G~ 617 (617)
..++ .++++++||||+.|+.+ |.++++||||||+||
T Consensus 262 ~~~~~~g~~~~~~~~~elg~ll~g~~~~r~~~~~itvf~s~G~ 304 (330)
T PRK08291 262 HHAIAAGLVAADAVFPELGQVIAGRRPGRTSDDDITICDLTGT 304 (330)
T ss_pred hhHHHcCCCChhhhhhhHHHHHcCCCCCCCCCCCEEEEeCCCc
Confidence 5542 23456899999999977 999999999999997
No 22
>PRK06199 ornithine cyclodeaminase; Validated
Probab=99.71 E-value=5.2e-18 Score=171.69 Aligned_cols=109 Identities=18% Similarity=0.327 Sum_probs=89.1
Q ss_pred CcccccccccccccccceeeeccCCc------cchhhhhcccCccccccccccccccccchhhhhcC-ceEEEecch---
Q psy13389 503 AVQAYEHGEDAARDADILVTATYSSV------PVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSH-SSIFFDSEA--- 572 (617)
Q Consensus 503 ~~~~~~~~~~~~~~adiv~~~t~s~~------p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~-~~~~~d~~~--- 572 (617)
.+.++.++++++++||||+|||+|++ |+|+.+||+| |+||+++|+ +|+|++++.. ++||||+.+
T Consensus 210 ~v~~~~s~~eav~~ADIVvtaT~s~~~~~s~~Pv~~~~~lkp-G~hv~~ig~-----~eld~~~l~~~a~vvvD~~~~~~ 283 (379)
T PRK06199 210 NVEVVDSIEEVVRGSDIVTYCNSGETGDPSTYPYVKREWVKP-GAFLLMPAA-----CRIDEGMEQGDVRKVVDNTGLYE 283 (379)
T ss_pred eEEEeCCHHHHHcCCCEEEEccCCCCCCCCcCcEecHHHcCC-CcEEecCCc-----ccCCHHHHhCCCcEEEcChhHhH
Confidence 47778999999999999999998766 9999999999 999999888 5899999998 789999953
Q ss_pred hhhcchhh------------hhhcc-----ccccccccccccccccc-cCCCCceeeeccCCC
Q psy13389 573 AARGELKG------------LYEQV-----PANMVGEVGGLIAANLT-RDARYPLTVFHSMGV 617 (617)
Q Consensus 573 ~~~~e~~~------------~~~~~-----~~~~~~~l~~~~~~~~~-~~~~~~~~~f~~~G~ 617 (617)
+...|+|+ +..++ ..+.+.||||||.|+.+ |.++++||||||+||
T Consensus 284 ~~~~e~g~~~~~~~~~~~g~~~~~~~~g~i~~~~i~eLgevl~g~~~gR~~~~~itvfksvG~ 346 (379)
T PRK06199 284 AWFEEVPKPAHNLIPVIGVRFMDMIAEGKLTLDQLEDIGDIVAGKAPGRQNDEEIIIMSVGGM 346 (379)
T ss_pred HHHHhcccccccccccccchhhhHHHcCCCChhhhhhHHHHHcCCCCCCCCCCceEEEeCCCc
Confidence 33344433 32222 22335699999999987 989999999999997
No 23
>KOG3576|consensus
Probab=99.67 E-value=2.5e-17 Score=141.96 Aligned_cols=115 Identities=40% Similarity=0.760 Sum_probs=88.1
Q ss_pred CCcccCCCCccccCChhHHHHHHhhccCCCceecCCCCCcCCCHHHHHHHHHhcCCCCCcccCccccccCCHHHHHHHHH
Q psy13389 232 IKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLR 311 (617)
Q Consensus 232 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~ 311 (617)
...|.|.+|++.|.....|.+|++.|..-++|.|..||+.|.....|++|+++|+|.+||+|..|++.|++.-.|..|++
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~ 194 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLK 194 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHH
Confidence 34577888888888888888888888777888888888888888888888888888888888888888888888888876
Q ss_pred HhCC-----------CCCccCCccccccCChhhHHHHHhhhcCCCC
Q psy13389 312 IHTN-----------SKPHACSICTESFSQKSNLYIHLKLQHGVNP 346 (617)
Q Consensus 312 ~h~~-----------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 346 (617)
.-++ .+.|.|..||.+-.....+..|++.||...|
T Consensus 195 kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp 240 (267)
T KOG3576|consen 195 KVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP 240 (267)
T ss_pred HHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence 5433 3557788888777777777777777775543
No 24
>KOG3576|consensus
Probab=99.66 E-value=2.6e-17 Score=141.88 Aligned_cols=128 Identities=30% Similarity=0.573 Sum_probs=108.0
Q ss_pred CCCceecCCCCCcCCCHHHHHHHHHhcCCCCCcccCccccccCCHHHHHHHHHHhCCCCCccCCccccccCChhhHHHHH
Q psy13389 259 GSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHL 338 (617)
Q Consensus 259 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~ 338 (617)
+...|.|.+|+|.|.....|.+|++-|...+.|-|..||+.|.....|++|+++|++.+||+|..|++.|..+-.|..|+
T Consensus 114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl 193 (267)
T KOG3576|consen 114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL 193 (267)
T ss_pred CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCccCCCCCCCccCChhHHHHHhhhccCCCCcccCccCCcCCCchhHHHHhhhhcCCCcc
Q psy13389 339 KLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPF 404 (617)
Q Consensus 339 ~~h~~~~~~~C~~C~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~ 404 (617)
+.-||... . ..++ ....+.|.|..||.+-.....+..|+..||...|+
T Consensus 194 ~kvhgv~~---------~----yayk-----err~kl~vcedcg~t~~~~e~~~~h~~~~hp~Spa 241 (267)
T KOG3576|consen 194 KKVHGVQH---------Q----YAYK-----ERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSPA 241 (267)
T ss_pred HHHcCchH---------H----HHHH-----HhhhheeeecccCCCCCChhHHHHHHHhcCCCCHH
Confidence 98887632 0 0011 11246788888888888888888888888766543
No 25
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.26 E-value=1.3e-11 Score=128.03 Aligned_cols=141 Identities=18% Similarity=0.409 Sum_probs=80.5
Q ss_pred eecCCCCCcCCCHHHHHHHHHhcCCCCCcccCc--cccccCCHHHHHHHHHHhCCCCCccCCccccccCChhhHHHHHhh
Q psy13389 263 YLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKL 340 (617)
Q Consensus 263 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~ 340 (617)
..|+.|...... ..|..|..... ...-.|+. |+..|.. ..+..| +.|+.|++.|. ...|..|++.
T Consensus 408 V~C~NC~~~i~l-~~l~lHe~~C~-r~~V~Cp~~~Cg~v~~r-~el~~H---------~~C~~Cgk~f~-~s~LekH~~~ 474 (567)
T PLN03086 408 VECRNCKHYIPS-RSIALHEAYCS-RHNVVCPHDGCGIVLRV-EEAKNH---------VHCEKCGQAFQ-QGEMEKHMKV 474 (567)
T ss_pred EECCCCCCccch-hHHHHHHhhCC-CcceeCCcccccceeec-cccccC---------ccCCCCCCccc-hHHHHHHHHh
Confidence 456666655543 33446654332 23345663 6666632 222333 46777777664 4566777766
Q ss_pred hcCCCCccCCCCCCCccCChhHHHHHhhhccCCCCcccCccCCcCCC----------chhHHHHhhhhcCCCcccccccc
Q psy13389 341 QHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPK----------KSVLKEHLRVSHNVNPFKCDICF 410 (617)
Q Consensus 341 h~~~~~~~C~~C~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~----------~~~l~~H~~~h~~~~~~~C~~C~ 410 (617)
+| .++.|+ ||+ .+ ....|..|+.+|.+.+++.|.+|++.|.. ...|..|.... |.+++.|..||
T Consensus 475 ~H--kpv~Cp-Cg~-~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cg 548 (567)
T PLN03086 475 FH--EPLQCP-CGV-VL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCG 548 (567)
T ss_pred cC--CCccCC-CCC-Cc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEccccC
Confidence 65 566776 764 33 44666667666666677777777776641 23566666663 66666666666
Q ss_pred ccccChHhHHHHH
Q psy13389 411 KLFTKKSNLRTHI 423 (617)
Q Consensus 411 ~~f~~~~~l~~H~ 423 (617)
+.+..+ .|..|+
T Consensus 549 k~Vrlr-dm~~H~ 560 (567)
T PLN03086 549 RSVMLK-EMDIHQ 560 (567)
T ss_pred Ceeeeh-hHHHHH
Confidence 665433 344554
No 26
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.23 E-value=3.4e-11 Score=124.84 Aligned_cols=98 Identities=18% Similarity=0.475 Sum_probs=53.7
Q ss_pred ecCCCCCcCCCHHHHHHHHHhcCCCCCcccCccccccCCHHHHHHHHHHhCCCCCccCCccccccC----------Chhh
Q psy13389 264 LCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFS----------QKSN 333 (617)
Q Consensus 264 ~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~----------~~~~ 333 (617)
.|+.|++.|. ...|..|++.|+ +++.|+ |++.+ .+..|..|+.+|.+.+++.|+.|++.|. ..+.
T Consensus 455 ~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~ 529 (567)
T PLN03086 455 HCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRG 529 (567)
T ss_pred cCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhh
Confidence 5666666554 455566666554 456666 66433 4456666666666666666666666653 1235
Q ss_pred HHHHHhhhcCCCCccCCCCCCCccCChhHHHHHhhh
Q psy13389 334 LYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRT 369 (617)
Q Consensus 334 l~~H~~~h~~~~~~~C~~C~~~~f~~~~~l~~H~~~ 369 (617)
|..|.... |.+++.|..||+ .+. ...+..|+..
T Consensus 530 Lt~HE~~C-G~rt~~C~~Cgk-~Vr-lrdm~~H~~~ 562 (567)
T PLN03086 530 MSEHESIC-GSRTAPCDSCGR-SVM-LKEMDIHQIA 562 (567)
T ss_pred HHHHHHhc-CCcceEccccCC-eee-ehhHHHHHHH
Confidence 66665553 566666666665 232 2345555443
No 27
>PHA00733 hypothetical protein
Probab=99.09 E-value=7.5e-11 Score=99.65 Aligned_cols=83 Identities=25% Similarity=0.466 Sum_probs=69.1
Q ss_pred CCCCcccCccCCcCCCchhHHHH--hh---hhcCCCccccccccccccChHhHHHHHHcC-CCCCCccccccccCchhHH
Q psy13389 372 GVKPFKCSMCDEGFPKKSVLKEH--LR---VSHNVNPFKCDICFKLFTKKSNLRTHIKTH-EPIPCDKCPEIFEKKTDLQ 445 (617)
Q Consensus 372 ~~~~~~C~~C~~~f~~~~~l~~H--~~---~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h-~~~~C~~C~~~f~~~~~l~ 445 (617)
..+++.|.+|.+.|.....|..| ++ .+++.+||.|+.|++.|.+...|..|++.| .+|.|+.|+++|.....|.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~~C~~CgK~F~~~~sL~ 116 (128)
T PHA00733 37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRNTDSTL 116 (128)
T ss_pred hhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcCCcCccCCCCCCccCCHHHHH
Confidence 35678888888888887777666 22 334578999999999999999999999976 4799999999999999999
Q ss_pred HHHhhhCCC
Q psy13389 446 EHVDKCHNL 454 (617)
Q Consensus 446 ~H~~~~H~~ 454 (617)
.|+...|++
T Consensus 117 ~H~~~~h~~ 125 (128)
T PHA00733 117 DHVCKKHNI 125 (128)
T ss_pred HHHHHhcCc
Confidence 999998873
No 28
>PHA00733 hypothetical protein
Probab=99.04 E-value=2e-10 Score=97.09 Aligned_cols=82 Identities=18% Similarity=0.475 Sum_probs=54.3
Q ss_pred CCceecCCCCCcCCCHHHHHHH--H---HhcCCCCCcccCccccccCCHHHHHHHHHHhCCCCCccCCccccccCChhhH
Q psy13389 260 SKRYLCTMCPKCFTRKDDLNRH--M---RNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNL 334 (617)
Q Consensus 260 ~~~~~C~~C~~~f~~~~~L~~H--~---~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l 334 (617)
.+++.|.+|.+.|.....|..| + ..+++.+||.|+.|++.|.+...|..|++.| ..+|.|+.|++.|.....|
T Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL 115 (128)
T PHA00733 38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDST 115 (128)
T ss_pred hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHH
Confidence 4556666666666655544443 1 1233466777777777777777777777765 3467777777777777777
Q ss_pred HHHHhhhcC
Q psy13389 335 YIHLKLQHG 343 (617)
Q Consensus 335 ~~H~~~h~~ 343 (617)
..|+...|+
T Consensus 116 ~~H~~~~h~ 124 (128)
T PHA00733 116 LDHVCKKHN 124 (128)
T ss_pred HHHHHHhcC
Confidence 777777665
No 29
>KOG3993|consensus
Probab=98.83 E-value=4.5e-10 Score=108.43 Aligned_cols=207 Identities=16% Similarity=0.207 Sum_probs=99.3
Q ss_pred ccCCCCccccCChhHHHHHHhhccCCCceecCCCCCcCCCHHHHHHHHHhcCCCCCccc-C-cccc-ccCCHHHHHHHHH
Q psy13389 235 FLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHC-S-VCFE-SFTQKALLNIHLR 311 (617)
Q Consensus 235 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C-~-~C~~-~f~~~~~l~~H~~ 311 (617)
|.|..|...|.....|.+|.-.-.-...|+|+.|+|.|.-..+|..|.+-|.....-.= . .=.+ .-.+....+.=-+
T Consensus 268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~r 347 (500)
T KOG3993|consen 268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAER 347 (500)
T ss_pred HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccc
Confidence 66666666666666666664322222346666666666666666666665532210000 0 0000 0000000000000
Q ss_pred H--hCCCCCccCCccccccCChhhHHHHHhhhcCCCCccCCCCCCCccCChhHHHHHhhhccCCCCcccCccCCcCCCch
Q psy13389 312 I--HTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKS 389 (617)
Q Consensus 312 ~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 389 (617)
. -..+.-|.|.+|+++|.....|+.|+.+|+....-+=. =. .|.....+. --+.|..|+-.+....
T Consensus 348 sg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~-a~--~f~~s~~~~---------l~~~~~~~a~h~~a~~ 415 (500)
T KOG3993|consen 348 SGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEK-AP--KFLLSRVIP---------LMHFNQAVATHSSASD 415 (500)
T ss_pred cCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhc-cc--Ccchhhccc---------cccccccccccccccc
Confidence 0 01123588999999999999999998887743211100 00 011110000 0123444444443332
Q ss_pred hHHHHhhhhcC-CCccccccccccccChHhHHHHHHcC---CCCCCccccccccCchhHHHHHhhhCC
Q psy13389 390 VLKEHLRVSHN-VNPFKCDICFKLFTKKSNLRTHIKTH---EPIPCDKCPEIFEKKTDLQEHVDKCHN 453 (617)
Q Consensus 390 ~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h---~~~~C~~C~~~f~~~~~l~~H~~~~H~ 453 (617)
.--.+...+.+ ...-.|++|+-.+.++..--.+.+.- ..|.|.+|..+|.+...|.+|+..+|.
T Consensus 416 ~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hp 483 (500)
T KOG3993|consen 416 SHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHP 483 (500)
T ss_pred ccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcCh
Confidence 22222211111 11234666665555554443443322 258888999999999999999988886
No 30
>PHA02768 hypothetical protein; Provisional
Probab=98.82 E-value=1.9e-09 Score=73.98 Aligned_cols=41 Identities=22% Similarity=0.646 Sum_probs=24.6
Q ss_pred cccccccccccChHhHHHHHHcCC-CCCCccccccccCchhH
Q psy13389 404 FKCDICFKLFTKKSNLRTHIKTHE-PIPCDKCPEIFEKKTDL 444 (617)
Q Consensus 404 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~C~~C~~~f~~~~~l 444 (617)
|.|+.||+.|.+.++|..|+++|. +|+|..|++.|...+.|
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f~~~s~l 47 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRISLRTGEY 47 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcCCcccCCcccceeccccee
Confidence 556666666666666666666665 66666666666555544
No 31
>KOG3993|consensus
Probab=98.81 E-value=9.9e-10 Score=106.14 Aligned_cols=159 Identities=13% Similarity=0.131 Sum_probs=85.9
Q ss_pred cccCccccccCCHHHHHHHHHHhCCCCCccCCccccccCChhhHHHHHhhhcCCCCcc-CC-CCCCCccCChhHHHHHhh
Q psy13389 291 FHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFK-CD-VCPNETFEKETQLSLHMR 368 (617)
Q Consensus 291 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~-C~-~C~~~~f~~~~~l~~H~~ 368 (617)
|.|.+|...|.....|.+|.-.-.----|+|+.|+|.|+-..||..|.+.|....--. -. .=.+.........+.-.+
T Consensus 268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~r 347 (500)
T KOG3993|consen 268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAER 347 (500)
T ss_pred HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccc
Confidence 6666666666666666666432111223777777777777777777777665321100 00 000000000000000000
Q ss_pred --hccCCCCcccCccCCcCCCchhHHHHhhhhcCCC-----------------ccccccccccccChHhHHHHHHcCC--
Q psy13389 369 --TVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVN-----------------PFKCDICFKLFTKKSNLRTHIKTHE-- 427 (617)
Q Consensus 369 --~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-----------------~~~C~~C~~~f~~~~~l~~H~~~h~-- 427 (617)
....+..|.|.+|+++|.+...|+.|+.+|+... .+.|..|.-.+.....--.+...+.
T Consensus 348 sg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~s 427 (500)
T KOG3993|consen 348 SGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAGS 427 (500)
T ss_pred cCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeecc
Confidence 0022347999999999999999999998887421 1345555554444333333332232
Q ss_pred --CCCCccccccccCchhHHHHHh
Q psy13389 428 --PIPCDKCPEIFEKKTDLQEHVD 449 (617)
Q Consensus 428 --~~~C~~C~~~f~~~~~l~~H~~ 449 (617)
-..|++|+-.+.++..--.|.+
T Consensus 428 ael~~pp~~~~ppsss~~sgg~~r 451 (500)
T KOG3993|consen 428 AELELPPYDGSPPSSSGSSGGYGR 451 (500)
T ss_pred ccccCCCCCCCCcccCCCCCcccc
Confidence 2458888888877766555543
No 32
>PHA02768 hypothetical protein; Provisional
Probab=98.75 E-value=3.5e-09 Score=72.74 Aligned_cols=44 Identities=20% Similarity=0.487 Sum_probs=36.5
Q ss_pred CcccCccCCcCCCchhHHHHhhhhcCCCccccccccccccChHhHH
Q psy13389 375 PFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLR 420 (617)
Q Consensus 375 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~ 420 (617)
.|.|+.||+.|.....|..|+++|+ ++|+|..|++.|.+.+.|.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence 3788888888888888888888887 6888888888888777653
No 33
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.44 E-value=1.2e-07 Score=55.52 Aligned_cols=25 Identities=36% Similarity=0.788 Sum_probs=17.2
Q ss_pred hHHHHhhhhcCCCcccccccccccc
Q psy13389 390 VLKEHLRVSHNVNPFKCDICFKLFT 414 (617)
Q Consensus 390 ~l~~H~~~h~~~~~~~C~~C~~~f~ 414 (617)
.|.+|+++|++++||.|++|++.|.
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence 3666777777777777777777665
No 34
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.38 E-value=2.1e-07 Score=54.54 Aligned_cols=24 Identities=50% Similarity=0.920 Sum_probs=12.8
Q ss_pred HHHHHHHhCCCCCccCCccccccC
Q psy13389 306 LNIHLRIHTNSKPHACSICTESFS 329 (617)
Q Consensus 306 l~~H~~~h~~~~~~~C~~C~~~f~ 329 (617)
|..|+++|++++||.|+.|+++|.
T Consensus 2 l~~H~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 2 LRRHMRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHSSSSSEEESSSSEEES
T ss_pred HHHHhhhcCCCCCCCCCCCcCeeC
Confidence 445555555555555555555553
No 35
>KOG1146|consensus
Probab=98.37 E-value=1.4e-07 Score=104.31 Aligned_cols=94 Identities=13% Similarity=0.199 Sum_probs=75.8
Q ss_pred cccccccccccChHhHHHHHHcCCCCCCccccccccCchhHHHHHhhhCCCCccccccccCCCCCCCCcccccCcccccc
Q psy13389 404 FKCDICFKLFTKKSNLRTHIKTHEPIPCDKCPEIFEKKTDLQEHVDKCHNLHEEDEEEGLDEFDAPKEKSFNCSKCLNIV 483 (617)
Q Consensus 404 ~~C~~C~~~f~~~~~l~~H~~~h~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~~~~~k~f~C~~C~~~f 483 (617)
+.|..|++.|.....+. |+-.-++|.|..|...|.....|..|.++.-..-.........-+..+.-++| |.+|.-.|
T Consensus 1261 ~~c~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~l~~~d~~~~-c~~c~~~~ 1338 (1406)
T KOG1146|consen 1261 GECGAVDELLTPSFGIS-TLDVTHRYLCRQCKMAFDGEAPLTAHQRKFCFAGRGSGGSMPPPLRVPDCTYH-CLACEVLL 1338 (1406)
T ss_pred chhhhccccccCcccee-ecccchhHHHHHHHhhhcchhHHHHHHHHHHhccCccccCCCCcccCcccccc-chHHHhhc
Confidence 78999999999988888 88888899999999999999999999976544333333334444455556677 99999999
Q ss_pred ccchhHHHHHhhhhcC
Q psy13389 484 RIPVEIKSLVEKLTSE 499 (617)
Q Consensus 484 ~~~~~l~~H~~~~~~~ 499 (617)
..+..|+.|++..+.+
T Consensus 1339 ~~~~alqihm~~~~~~ 1354 (1406)
T KOG1146|consen 1339 SGREALQIHMRSSAHR 1354 (1406)
T ss_pred chhHHHHHHHHHhhhc
Confidence 9999999999976543
No 36
>PHA00732 hypothetical protein
Probab=98.30 E-value=4.5e-07 Score=69.09 Aligned_cols=45 Identities=27% Similarity=0.509 Sum_probs=25.4
Q ss_pred ccccccccccccChHhHHHHHH-cCCCCCCccccccccCchhHHHHHhh
Q psy13389 403 PFKCDICFKLFTKKSNLRTHIK-THEPIPCDKCPEIFEKKTDLQEHVDK 450 (617)
Q Consensus 403 ~~~C~~C~~~f~~~~~l~~H~~-~h~~~~C~~C~~~f~~~~~l~~H~~~ 450 (617)
||.|+.||+.|.+...|..|++ .|.++.|+.|++.|. .|..|++.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~~~C~~CgKsF~---~l~~H~~~ 46 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHTLTKCPVCNKSYR---RLNQHFYS 46 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccCCCccCCCCCEeC---Chhhhhcc
Confidence 3555556666655556666655 355556666666665 35555543
No 37
>PHA00616 hypothetical protein
Probab=98.24 E-value=4.1e-07 Score=59.39 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=18.1
Q ss_pred CccCCccccccCChhhHHHHHhhhcCCCCccCC
Q psy13389 318 PHACSICTESFSQKSNLYIHLKLQHGVNPFKCD 350 (617)
Q Consensus 318 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~ 350 (617)
||+|+.||+.|..+++|..|++.||+++++.|+
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~ 33 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE 33 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence 355555555555555555555555555555443
No 38
>PHA00616 hypothetical protein
Probab=98.18 E-value=6.5e-07 Score=58.45 Aligned_cols=36 Identities=28% Similarity=0.495 Sum_probs=29.8
Q ss_pred CcccCccCCcCCCchhHHHHhhhhcCCCcccccccc
Q psy13389 375 PFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICF 410 (617)
Q Consensus 375 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~ 410 (617)
||+|+.||+.|..++.|..|++.||+.+++.|+.=-
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~y 36 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYFY 36 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccceeEEE
Confidence 578888888888888888888888888888876543
No 39
>PHA00732 hypothetical protein
Probab=98.17 E-value=1.2e-06 Score=66.82 Aligned_cols=48 Identities=31% Similarity=0.559 Sum_probs=36.0
Q ss_pred CcccCccCCcCCCchhHHHHhhhhcCCCccccccccccccChHhHHHHHHcCC
Q psy13389 375 PFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTHE 427 (617)
Q Consensus 375 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~ 427 (617)
||.|..|++.|.+...|+.|++.+|. ++.|+.||+.|. .|..|++++.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~---~l~~H~~~~~ 48 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT--LTKCPVCNKSYR---RLNQHFYSQY 48 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC--CCccCCCCCEeC---ChhhhhcccC
Confidence 57788888888888888888875332 357888888887 5778887664
No 40
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.05 E-value=2.9e-06 Score=73.09 Aligned_cols=84 Identities=13% Similarity=0.192 Sum_probs=62.9
Q ss_pred cCccccccccchhHHHHHhhhhcCCCCCccccc----ccccccccccceeeeccCCccchhhhhcccCcccccccccccc
Q psy13389 476 CSKCLNIVRIPVEIKSLVEKLTSEGVPAVQAYE----HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLN 551 (617)
Q Consensus 476 C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~----~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~~ 551 (617)
.-+-|++......|...+.. .+..+..++ +++++++.||||++||.+. |+|+++|++| |++|..+|...
T Consensus 31 v~VvGrs~~vG~pla~lL~~----~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~-~~i~~~~ikp-Ga~Vidvg~~~- 103 (140)
T cd05212 31 VLVVGRSGIVGAPLQCLLQR----DGATVYSCDWKTIQLQSKVHDADVVVVGSPKP-EKVPTEWIKP-GATVINCSPTK- 103 (140)
T ss_pred EEEECCCchHHHHHHHHHHH----CCCEEEEeCCCCcCHHHHHhhCCEEEEecCCC-CccCHHHcCC-CCEEEEcCCCc-
Confidence 34556666666666665553 234455555 6788999999999999999 9999999999 99999999875
Q ss_pred ccccchhhhhcCceEEEe
Q psy13389 552 HHSELDAAIYSHSSIFFD 569 (617)
Q Consensus 552 ~~~e~~~~~~~~~~~~~d 569 (617)
|.+++++.+|.+++=
T Consensus 104 ---~~~~~~~~~a~~~tP 118 (140)
T cd05212 104 ---LSGDDVKESASLYVP 118 (140)
T ss_pred ---ccchhhHhhceEEcC
Confidence 446667777766653
No 41
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.81 E-value=2.5e-05 Score=55.24 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=41.4
Q ss_pred CCCCccccccccCchhHHHHHhhhCCCCccccccccCCCCCCCCcccccCccccccccchhHHHHHhhhh
Q psy13389 428 PIPCDKCPEIFEKKTDLQEHVDKCHNLHEEDEEEGLDEFDAPKEKSFNCSKCLNIVRIPVEIKSLVEKLT 497 (617)
Q Consensus 428 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~~~~~k~f~C~~C~~~f~~~~~l~~H~~~~~ 497 (617)
.|.|++|++ ..+...|..|+...|.. ..+.+.||+|...+. ..|.+|+...+
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~---------------~~~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRS---------------ESKNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcC---------------CCCCccCCCchhhhh--hHHHHHHHHhc
Confidence 489999999 56678999999998971 345799999998655 48888887665
No 42
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.80 E-value=2.2e-05 Score=55.57 Aligned_cols=48 Identities=33% Similarity=0.630 Sum_probs=27.2
Q ss_pred cccCccCCcCCCchhHHHHhhhhcCC--CccccccccccccChHhHHHHHHcC
Q psy13389 376 FKCSMCDEGFPKKSVLKEHLRVSHNV--NPFKCDICFKLFTKKSNLRTHIKTH 426 (617)
Q Consensus 376 ~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~~H~~~h 426 (617)
|.|++|++. .+...|..|....|.. +.+.|++|...+. .+|..|+..+
T Consensus 3 f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~ 52 (54)
T PF05605_consen 3 FTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQ 52 (54)
T ss_pred cCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHh
Confidence 667777773 4456677776654432 3466666665433 2555555543
No 43
>KOG1146|consensus
Probab=97.70 E-value=1.4e-05 Score=89.16 Aligned_cols=72 Identities=28% Similarity=0.461 Sum_probs=46.1
Q ss_pred cccccCCHHHHHHHHH-hcCCCcceecCccccccCChHHHHHHHHHcc-------------------------CCCCccc
Q psy13389 128 CRFDFYVKREYNRHMK-IHDGVKVFLCSVCSKTFTDKVKFNRHMRAHE-------------------------GIKPFQC 181 (617)
Q Consensus 128 C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------------------~~~~~~C 181 (617)
|+..+.....+..|+. .+.-.+.|+|+.|+..|.....|..||+.-+ +.++|.|
T Consensus 442 ~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C 521 (1406)
T KOG1146|consen 442 AEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPC 521 (1406)
T ss_pred hhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccc
Confidence 3333344444444332 2333467888888888888888888888621 1246777
Q ss_pred CcCccccCChHHHHHHHH
Q psy13389 182 SVCSESFTQRSNLNIHLR 199 (617)
Q Consensus 182 ~~C~~~f~~~~~l~~H~~ 199 (617)
..|...+..+.+|-+|+.
T Consensus 522 ~~C~~stttng~Lsihlq 539 (1406)
T KOG1146|consen 522 RACNYSTTTNGNLSIHLQ 539 (1406)
T ss_pred eeeeeeeecchHHHHHHH
Confidence 777777777777777764
No 44
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.57 E-value=3.2e-05 Score=43.96 Aligned_cols=20 Identities=55% Similarity=1.014 Sum_probs=8.6
Q ss_pred ccccccccccChHhHHHHHH
Q psy13389 405 KCDICFKLFTKKSNLRTHIK 424 (617)
Q Consensus 405 ~C~~C~~~f~~~~~l~~H~~ 424 (617)
.|+.|++.|.++..|..|++
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~ 21 (23)
T PF00096_consen 2 KCPICGKSFSSKSNLKRHMR 21 (23)
T ss_dssp EETTTTEEESSHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHh
Confidence 34444444444444444443
No 45
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.41 E-value=0.00011 Score=41.79 Aligned_cols=18 Identities=61% Similarity=1.047 Sum_probs=6.8
Q ss_pred CCccccccCChhhHHHHH
Q psy13389 321 CSICTESFSQKSNLYIHL 338 (617)
Q Consensus 321 C~~C~~~f~~~~~l~~H~ 338 (617)
|+.|++.|.++..|..|+
T Consensus 3 C~~C~~~f~~~~~l~~H~ 20 (23)
T PF00096_consen 3 CPICGKSFSSKSNLKRHM 20 (23)
T ss_dssp ETTTTEEESSHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHH
Confidence 333333333333333333
No 46
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.37 E-value=8.6e-05 Score=60.70 Aligned_cols=73 Identities=29% Similarity=0.567 Sum_probs=19.4
Q ss_pred cCCccccccCChhhHHHHHhhhcCCCCccCCCCCCCccCChhHHHHHhhhccCCCCcccCccCCcCCCchhHHHHhhhh
Q psy13389 320 ACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVS 398 (617)
Q Consensus 320 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h 398 (617)
+|.+|+..|.+...|..|+...|+...-... .+.....+..+++.. ....+.|.+|++.|.+...|..||+.+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~-----~l~~~~~~~~~~~~~-~~~~~~C~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQK-----YLVDPNRLLNYLRKK-VKESFRCPYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp ------------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred Ccccccccccccccccccccccccccccccc-----ccccccccccccccc-cCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence 5888999999999999998887765321111 122223333333321 122588888888888888888888764
No 47
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.36 E-value=9e-05 Score=60.56 Aligned_cols=68 Identities=24% Similarity=0.415 Sum_probs=22.5
Q ss_pred CCccccccccCchhHHHHHhhhCCCCcccccc-----c-cCCCCCCCCcccccCccccccccchhHHHHHhhhh
Q psy13389 430 PCDKCPEIFEKKTDLQEHVDKCHNLHEEDEEE-----G-LDEFDAPKEKSFNCSKCLNIVRIPVEIKSLVEKLT 497 (617)
Q Consensus 430 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~-----~-~~~~~~~~~k~f~C~~C~~~f~~~~~l~~H~~~~~ 497 (617)
+|.+|+..|.+...|..|+...|.+...+... + +..+...-...+.|.+|++.|.+...|..|++...
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~ 74 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSKH 74 (100)
T ss_dssp ------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCcc
Confidence 47778888888888888887777654332111 1 11111112236999999999999999999999754
No 48
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.23 E-value=0.00017 Score=41.35 Aligned_cols=23 Identities=39% Similarity=0.977 Sum_probs=10.5
Q ss_pred cccCccCCcCCCchhHHHHhhhh
Q psy13389 376 FKCSMCDEGFPKKSVLKEHLRVS 398 (617)
Q Consensus 376 ~~C~~C~~~f~~~~~l~~H~~~h 398 (617)
|.|++|++.|.+...|+.|++.|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 34555555555555555555444
No 49
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.21 E-value=0.0002 Score=41.00 Aligned_cols=23 Identities=39% Similarity=0.788 Sum_probs=10.4
Q ss_pred ccCCccccccCChhhHHHHHhhh
Q psy13389 319 HACSICTESFSQKSNLYIHLKLQ 341 (617)
Q Consensus 319 ~~C~~C~~~f~~~~~l~~H~~~h 341 (617)
|.|++|++.|.+...|+.|++.+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 34555555555555555555444
No 50
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.13 E-value=0.00013 Score=68.62 Aligned_cols=26 Identities=31% Similarity=0.727 Sum_probs=21.9
Q ss_pred CCCCcccCc--cCCcCCCchhHHHHhhh
Q psy13389 372 GVKPFKCSM--CDEGFPKKSVLKEHLRV 397 (617)
Q Consensus 372 ~~~~~~C~~--C~~~f~~~~~l~~H~~~ 397 (617)
++|||+|++ |+|+++....|+-|+.-
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lh 373 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLH 373 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhc
Confidence 458999987 99999999999999764
No 51
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.08 E-value=0.00035 Score=41.44 Aligned_cols=23 Identities=48% Similarity=0.883 Sum_probs=10.7
Q ss_pred cccccccccccChHhHHHHHHcC
Q psy13389 404 FKCDICFKLFTKKSNLRTHIKTH 426 (617)
Q Consensus 404 ~~C~~C~~~f~~~~~l~~H~~~h 426 (617)
|.|..|++.|.+...|..|++.|
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHCTT
T ss_pred CCCCccCCccCChhHHHHHhHHh
Confidence 44444444444444444444443
No 52
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.02 E-value=0.00039 Score=65.44 Aligned_cols=23 Identities=39% Similarity=0.904 Sum_probs=14.9
Q ss_pred ccccCCC--CccccCChHHHHHHHH
Q psy13389 55 KKFKCNI--CPKRYARKNRLTNHLR 77 (617)
Q Consensus 55 ~~~~C~~--C~~~f~~~~~l~~H~~ 77 (617)
|||+|++ |.|.|.+...|+-|+.
T Consensus 348 KpykCpV~gC~K~YknqnGLKYH~l 372 (423)
T COG5189 348 KPYKCPVEGCNKKYKNQNGLKYHML 372 (423)
T ss_pred ceecCCCCCchhhhccccchhhhhh
Confidence 5666665 6666666666666654
No 53
>KOG2231|consensus
Probab=97.01 E-value=0.0012 Score=70.38 Aligned_cols=48 Identities=35% Similarity=0.743 Sum_probs=25.9
Q ss_pred cCCccccccCChhhHHHHHhhhcCCCCccCCCCC-----CCccCChhHHHHHhhhcc
Q psy13389 320 ACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCP-----NETFEKETQLSLHMRTVH 371 (617)
Q Consensus 320 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~-----~~~f~~~~~l~~H~~~h~ 371 (617)
.|..|...|-....|.+|++.+| |.|..|. +..|.....|..|.+..|
T Consensus 184 ~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H 236 (669)
T KOG2231|consen 184 LCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH 236 (669)
T ss_pred cchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC
Confidence 46666666666666666666555 3444442 223444455555555544
No 54
>KOG2231|consensus
Probab=97.01 E-value=0.0016 Score=69.38 Aligned_cols=17 Identities=29% Similarity=0.726 Sum_probs=9.5
Q ss_pred cCCCCcccCChHHHHHHH
Q psy13389 97 CSQCPKTFVDKWHLNRHL 114 (617)
Q Consensus 97 C~~C~~~f~~~~~l~~H~ 114 (617)
|..| -.|.+...|+.|+
T Consensus 118 ~~~c-~~~~s~~~Lk~H~ 134 (669)
T KOG2231|consen 118 CLHC-TEFKSVENLKNHM 134 (669)
T ss_pred Cccc-cchhHHHHHHHHH
Confidence 4555 4455555666665
No 55
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.00 E-value=0.00039 Score=41.22 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=15.2
Q ss_pred CccCCccccccCChhhHHHHHhhhc
Q psy13389 318 PHACSICTESFSQKSNLYIHLKLQH 342 (617)
Q Consensus 318 ~~~C~~C~~~f~~~~~l~~H~~~h~ 342 (617)
||+|..|++.|.+...|..|++.|+
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 4566666666666666666665554
No 56
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.55 E-value=0.0019 Score=43.26 Aligned_cols=31 Identities=35% Similarity=0.693 Sum_probs=15.7
Q ss_pred CCCccCCccccccCChhhHHHHHhhhcCCCC
Q psy13389 316 SKPHACSICTESFSQKSNLYIHLKLQHGVNP 346 (617)
Q Consensus 316 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 346 (617)
+.|..|++|+..+.+..+|++|+.+.|+.+|
T Consensus 22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 22 EQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp S--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred CCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 4456666666666666666666666665544
No 57
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.24 E-value=0.0034 Score=42.07 Aligned_cols=32 Identities=25% Similarity=0.598 Sum_probs=21.3
Q ss_pred CCCCcccCccCCcCCCchhHHHHhhhhcCCCc
Q psy13389 372 GVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNP 403 (617)
Q Consensus 372 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 403 (617)
.+.|-.|++|+..+....+|++|+...|+.+|
T Consensus 21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 35678888888888888888888888887765
No 58
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.14 E-value=0.0033 Score=36.52 Aligned_cols=20 Identities=35% Similarity=0.906 Sum_probs=9.4
Q ss_pred CCccccccccCchhHHHHHh
Q psy13389 430 PCDKCPEIFEKKTDLQEHVD 449 (617)
Q Consensus 430 ~C~~C~~~f~~~~~l~~H~~ 449 (617)
.|+.|++.|.+...|..|++
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 2 RCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCcchhCCHHHHHHHHH
Confidence 34444444444444444444
No 59
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.10 E-value=0.0071 Score=57.86 Aligned_cols=73 Identities=29% Similarity=0.615 Sum_probs=56.5
Q ss_pred ccCccCCcCCCchhHHHHhhhhcCCCccccccccc-------cccChHhHHHHHHcCCCCCCcc--cc----ccccCchh
Q psy13389 377 KCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFK-------LFTKKSNLRTHIKTHEPIPCDK--CP----EIFEKKTD 443 (617)
Q Consensus 377 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~-------~f~~~~~l~~H~~~h~~~~C~~--C~----~~f~~~~~ 443 (617)
.|..|...|.+-..|..|+|..|. .|.+|++ -|.+...|..|.+.- .|.|.+ |- ..|.....
T Consensus 222 ~C~FC~~~FYdDDEL~~HcR~~HE----~ChICD~v~p~~~QYFK~Y~~Le~HF~~~-hy~ct~qtc~~~k~~vf~~~~e 296 (493)
T COG5236 222 LCIFCKIYFYDDDELRRHCRLRHE----ACHICDMVGPIRYQYFKSYEDLEAHFRNA-HYCCTFQTCRVGKCYVFPYHTE 296 (493)
T ss_pred hhhhccceecChHHHHHHHHhhhh----hhhhhhccCccchhhhhCHHHHHHHhhcC-ceEEEEEEEecCcEEEeccHHH
Confidence 599999999999999999998773 3666654 477888899997643 355533 42 57899999
Q ss_pred HHHHHhhhCCC
Q psy13389 444 LQEHVDKCHNL 454 (617)
Q Consensus 444 l~~H~~~~H~~ 454 (617)
|+.|+.+.|+.
T Consensus 297 l~~h~~~~h~~ 307 (493)
T COG5236 297 LLEHLTRFHKV 307 (493)
T ss_pred HHHHHHHHhhc
Confidence 99999999973
No 60
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.85 E-value=0.015 Score=55.74 Aligned_cols=22 Identities=36% Similarity=0.859 Sum_probs=12.9
Q ss_pred cCCCCccccCChhHHHHHHhhc
Q psy13389 236 LCSMCAKCFSRKDDLNRHMKIH 257 (617)
Q Consensus 236 ~C~~C~~~f~~~~~L~~H~~~h 257 (617)
.|..|...|.+-..|..|++..
T Consensus 222 ~C~FC~~~FYdDDEL~~HcR~~ 243 (493)
T COG5236 222 LCIFCKIYFYDDDELRRHCRLR 243 (493)
T ss_pred hhhhccceecChHHHHHHHHhh
Confidence 3666666666666666666543
No 61
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=95.84 E-value=0.0051 Score=35.13 Aligned_cols=23 Identities=52% Similarity=0.674 Sum_probs=10.8
Q ss_pred ccCCccccccCChhhHHHHHhhhc
Q psy13389 319 HACSICTESFSQKSNLYIHLKLQH 342 (617)
Q Consensus 319 ~~C~~C~~~f~~~~~l~~H~~~h~ 342 (617)
|+|+.|+.... ...|..|++.+|
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 34555555554 555555555544
No 62
>smart00355 ZnF_C2H2 zinc finger.
Probab=95.84 E-value=0.0084 Score=34.73 Aligned_cols=18 Identities=33% Similarity=0.700 Sum_probs=6.8
Q ss_pred cCccccccCCHHHHHHHH
Q psy13389 293 CSVCFESFTQKALLNIHL 310 (617)
Q Consensus 293 C~~C~~~f~~~~~l~~H~ 310 (617)
|+.|++.|.+...|..|+
T Consensus 3 C~~C~~~f~~~~~l~~H~ 20 (26)
T smart00355 3 CPECGKVFKSKSALKEHM 20 (26)
T ss_pred CCCCcchhCCHHHHHHHH
Confidence 333333333333333333
No 63
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=95.79 E-value=0.0046 Score=35.73 Aligned_cols=21 Identities=48% Similarity=1.053 Sum_probs=10.5
Q ss_pred cccccccccccChHhHHHHHH
Q psy13389 404 FKCDICFKLFTKKSNLRTHIK 424 (617)
Q Consensus 404 ~~C~~C~~~f~~~~~l~~H~~ 424 (617)
|.|.+|++.|.+...|..|++
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~ 21 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLR 21 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHC
Confidence 345555555555555555544
No 64
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.64 E-value=0.0028 Score=66.46 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=53.0
Q ss_pred cccccccccccceeeeccCCccchhhhhcccCcc----ccccccccccccccchhhh--hcCce-EEEecchhhhc
Q psy13389 508 EHGEDAARDADILVTATYSSVPVLKYEWLKKKDA----HINAVGAGLNHHSELDAAI--YSHSS-IFFDSEAAARG 576 (617)
Q Consensus 508 ~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~----~v~~~g~~~~~~~e~~~~~--~~~~~-~~~d~~~~~~~ 576 (617)
.+..+++.++|||++||+++.|++..+|+++ ++ +...++.+..-.+++++++ +..+. +.+|++.++..
T Consensus 234 ~~~~~~l~~aDvVI~aT~s~~~~i~~~~l~~-~~~~~~~~~~vviDla~Prdid~~v~~l~~v~l~~vDdl~~~~~ 308 (423)
T PRK00045 234 DELPEALAEADIVISSTGAPHPIIGKGMVER-ALKARRHRPLLLVDLAVPRDIEPEVGELPGVYLYDVDDLQEIVE 308 (423)
T ss_pred HHHHHHhccCCEEEECCCCCCcEEcHHHHHH-HHhhccCCCeEEEEeCCCCCCcccccccCCeEEEEHHHHHHHHH
Confidence 4566778899999999999999999999977 43 4455666666668999988 44554 77898887764
No 65
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=95.64 E-value=0.0062 Score=34.78 Aligned_cols=21 Identities=43% Similarity=0.683 Sum_probs=8.1
Q ss_pred ccCccCCcCCCchhHHHHhhhh
Q psy13389 377 KCSMCDEGFPKKSVLKEHLRVS 398 (617)
Q Consensus 377 ~C~~C~~~f~~~~~l~~H~~~h 398 (617)
+|+.|+.... +..|.+|++.+
T Consensus 2 ~C~~C~y~t~-~~~l~~H~~~~ 22 (24)
T PF13909_consen 2 KCPHCSYSTS-KSNLKRHLKRH 22 (24)
T ss_dssp E-SSSS-EES-HHHHHHHHHHH
T ss_pred CCCCCCCcCC-HHHHHHHHHhh
Confidence 3444444443 44444444443
No 66
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.62 E-value=0.0028 Score=66.23 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=52.8
Q ss_pred cccccccccccceeeeccCCccchhhhhcccCccc---cccccccccccccchhhh--hcCce-EEEecchhhhc
Q psy13389 508 EHGEDAARDADILVTATYSSVPVLKYEWLKKKDAH---INAVGAGLNHHSELDAAI--YSHSS-IFFDSEAAARG 576 (617)
Q Consensus 508 ~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~---v~~~g~~~~~~~e~~~~~--~~~~~-~~~d~~~~~~~ 576 (617)
.+..+++.++|||++||+++.|++..+|+++ +.. ...++.+.+-.+++++++ +..+. +.+|++.++..
T Consensus 232 ~~l~~~l~~aDvVi~aT~s~~~ii~~e~l~~-~~~~~~~~~~viDla~Prdid~~v~~l~~v~l~~vDdl~~~~~ 305 (417)
T TIGR01035 232 EDLEEYLAEADIVISSTGAPHPIVSKEDVER-ALRERTRPLFIIDIAVPRDVDPAVARLEGVFLYDVDDLQPVVE 305 (417)
T ss_pred HHHHHHHhhCCEEEECCCCCCceEcHHHHHH-HHhcCCCCeEEEEeCCCCCCChhhcCcCCeEEEEHHHHHHHHH
Confidence 4566778899999999999999999999976 332 344566666668999998 66675 78898877664
No 67
>KOG2785|consensus
Probab=95.40 E-value=0.04 Score=54.19 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=46.2
Q ss_pred CcccCccCCcCCCchhHHHHhhhhcCCCcccccccccc-ccChHhHHHHH--HcCCCCCCcccc---ccccCchhHHHHH
Q psy13389 375 PFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKL-FTKKSNLRTHI--KTHEPIPCDKCP---EIFEKKTDLQEHV 448 (617)
Q Consensus 375 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~-f~~~~~l~~H~--~~h~~~~C~~C~---~~f~~~~~l~~H~ 448 (617)
|-.|-.|++.|++-..-..||..+||-..= +.. .+....|..=+ ++-..|.|-.|+ +.|.+....+.||
T Consensus 166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIP-----dreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM 240 (390)
T KOG2785|consen 166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIP-----DREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHM 240 (390)
T ss_pred CcceeecCCCcccHHHHHHHHhhccCCcCC-----chHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHH
Confidence 466888888888888888888887763210 000 12222222222 333468899998 9999999999999
Q ss_pred hh
Q psy13389 449 DK 450 (617)
Q Consensus 449 ~~ 450 (617)
..
T Consensus 241 ~~ 242 (390)
T KOG2785|consen 241 RD 242 (390)
T ss_pred hh
Confidence 75
No 68
>KOG2482|consensus
Probab=95.40 E-value=0.029 Score=53.89 Aligned_cols=141 Identities=23% Similarity=0.383 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhCC-CCCccCCccccccC-ChhhHHHHHhhhcCCCCccCCCCCCCccCChhHHHHHhhhccCCCCcccCc
Q psy13389 303 KALLNIHLRIHTN-SKPHACSICTESFS-QKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSM 380 (617)
Q Consensus 303 ~~~l~~H~~~h~~-~~~~~C~~C~~~f~-~~~~l~~H~~~h~~~~~~~C~~C~~~~f~~~~~l~~H~~~h~~~~~~~C~~ 380 (617)
+..|..|++--.+ ....+|-.|...+. +++..-.|+-..|+-+.=. -.+ ...-..|-.|++... ..+.|-+
T Consensus 128 ~eaLeqqQ~Eredt~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGl---pDn--iVyvnelLehLkekL--~r~~CLy 200 (423)
T KOG2482|consen 128 KEALEQQQKEREDTIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGL---PDN--IVYVNELLEHLKEKL--ERLRCLY 200 (423)
T ss_pred HHHHHHHHHHhcCCeeeeEEEEecchhcccHHHHHHHHHHHhhhccCC---Ccc--eeeHHHHHHHHHHHH--hhheeee
Confidence 4556666654322 23457888887654 5666777876666532100 000 111122333333211 2356666
Q ss_pred cCCcCCCchhHHHHhhhhc--CC----------------------------------------------------Cc--c
Q psy13389 381 CDEGFPKKSVLKEHLRVSH--NV----------------------------------------------------NP--F 404 (617)
Q Consensus 381 C~~~f~~~~~l~~H~~~h~--~~----------------------------------------------------~~--~ 404 (617)
|.+.|+.+..|+.||+... .. .+ -
T Consensus 201 CekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v 280 (423)
T KOG2482|consen 201 CEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSV 280 (423)
T ss_pred eccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccce
Confidence 6666666666666665321 10 11 3
Q ss_pred ccccccccccChHhHHHHHHcCC------------------------------CCCCccccccccCchhHHHHHhh
Q psy13389 405 KCDICFKLFTKKSNLRTHIKTHE------------------------------PIPCDKCPEIFEKKTDLQEHVDK 450 (617)
Q Consensus 405 ~C~~C~~~f~~~~~l~~H~~~h~------------------------------~~~C~~C~~~f~~~~~l~~H~~~ 450 (617)
.|-.|....-+...|..||++-+ .-.|-.|...|.....|..||..
T Consensus 281 ~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e 356 (423)
T KOG2482|consen 281 VCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVE 356 (423)
T ss_pred EEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhccc
Confidence 68888888888888888887532 12488889999999999999875
No 69
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=95.32 E-value=0.0098 Score=34.31 Aligned_cols=18 Identities=39% Similarity=0.866 Sum_probs=7.7
Q ss_pred cCccccccCCHHHHHHHH
Q psy13389 293 CSVCFESFTQKALLNIHL 310 (617)
Q Consensus 293 C~~C~~~f~~~~~l~~H~ 310 (617)
|.+|++.|.+...|..|+
T Consensus 3 C~~C~~~f~s~~~~~~H~ 20 (25)
T PF12874_consen 3 CDICNKSFSSENSLRQHL 20 (25)
T ss_dssp ETTTTEEESSHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHH
Confidence 444444444444444443
No 70
>PRK04860 hypothetical protein; Provisional
Probab=95.11 E-value=0.0098 Score=52.40 Aligned_cols=38 Identities=26% Similarity=0.699 Sum_probs=28.3
Q ss_pred CcccCccCCcCCCchhHHHHhhhhcCCCccccccccccccCh
Q psy13389 375 PFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKK 416 (617)
Q Consensus 375 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 416 (617)
+|.|. |+. ....+++|.++|.++++|.|..|+..|...
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~ 156 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK 156 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence 57787 776 666777888888888888888887776543
No 71
>PRK04860 hypothetical protein; Provisional
Probab=94.89 E-value=0.015 Score=51.29 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=10.7
Q ss_pred HHHHHHHhcCCCCCcccCcccccc
Q psy13389 277 DLNRHMRNHDGLKPFHCSVCFESF 300 (617)
Q Consensus 277 ~L~~H~~~h~~~~~~~C~~C~~~f 300 (617)
.+++|.++|.++++|.|..|+..|
T Consensus 130 ~~rrH~ri~~g~~~YrC~~C~~~l 153 (160)
T PRK04860 130 TVRRHNRVVRGEAVYRCRRCGETL 153 (160)
T ss_pred HHHHHHHHhcCCccEECCCCCcee
Confidence 344444444444444444444443
No 72
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=94.85 E-value=0.014 Score=52.74 Aligned_cols=39 Identities=21% Similarity=0.116 Sum_probs=34.9
Q ss_pred cccccccccceeeeccCCccchhhhhcccCcccccccccc
Q psy13389 510 GEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAG 549 (617)
Q Consensus 510 ~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~ 549 (617)
..+.++.|||||+|+....-.+..+|++| |+.|.-||..
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~i~~d~ik~-GavVIDVGi~ 158 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYKVPTELLKD-GAICINFASI 158 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCccCHHHcCC-CcEEEEcCCC
Confidence 44678999999999988886699999999 9999999987
No 73
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=94.74 E-value=0.0082 Score=63.80 Aligned_cols=139 Identities=27% Similarity=0.415 Sum_probs=78.3
Q ss_pred CCcccCccccccCCHHHHHHHHH--HhCCC--CCccCC--ccccccCChhhHHHHHhhhcCCCCccCCCCCCC-ccCChh
Q psy13389 289 KPFHCSVCFESFTQKALLNIHLR--IHTNS--KPHACS--ICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNE-TFEKET 361 (617)
Q Consensus 289 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~-~f~~~~ 361 (617)
.++.|..|...|.....|..|.+ .|.++ +++.|+ .|++.|.....+..|...|.+..++.+..-... .+....
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL 367 (467)
T ss_pred cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence 35666666666666666666666 56666 666666 566666666666666666666665554332210 011000
Q ss_pred -----HHHHHhhhccCCCCcccC--ccCCcCCCchhHHHHhhhhcCCC--ccccccccccccChHhHHHHHHcCC
Q psy13389 362 -----QLSLHMRTVHGVKPFKCS--MCDEGFPKKSVLKEHLRVSHNVN--PFKCDICFKLFTKKSNLRTHIKTHE 427 (617)
Q Consensus 362 -----~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~l~~H~~~h~ 427 (617)
..............+.+. .|...+.....+..|...|-... .+.+..|.+.|.....+..|++.|.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (467)
T COG5048 368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHT 442 (467)
T ss_pred CCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccc
Confidence 011111111222334443 26666666666666666665444 4566677777777777777777775
No 74
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=94.72 E-value=0.01 Score=63.13 Aligned_cols=148 Identities=26% Similarity=0.473 Sum_probs=81.6
Q ss_pred CcccCCCCccccCChhHHHHHHh--hccCC--CceecC--CCCCcCCCHHHHHHHHHhcCCCCCcccCc--cccccCCHH
Q psy13389 233 KPFLCSMCAKCFSRKDDLNRHMK--IHEGS--KRYLCT--MCPKCFTRKDDLNRHMRNHDGLKPFHCSV--CFESFTQKA 304 (617)
Q Consensus 233 ~~~~C~~C~~~f~~~~~L~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~C~~--C~~~f~~~~ 304 (617)
.++.|..|...|.....|..|.+ .|.++ +++.|+ .|++.|.....+..|...|.+..++.+.. |...+....
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL 367 (467)
T ss_pred cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence 35667777777777777777777 67666 677777 67777777777777777776666665543 333332222
Q ss_pred HH-----HHHHHHhCCCCCccCCc--cccccCChhhHHHHHhhhcCCC--CccCCCCCCCccCChhHHHHHhhhccCCCC
Q psy13389 305 LL-----NIHLRIHTNSKPHACSI--CTESFSQKSNLYIHLKLQHGVN--PFKCDVCPNETFEKETQLSLHMRTVHGVKP 375 (617)
Q Consensus 305 ~l-----~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~~f~~~~~l~~H~~~h~~~~~ 375 (617)
.- ......-.....+.+.. |...+.....+..|...+-... .+.+..|.+ .+.....+..|++.+....+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 446 (467)
T COG5048 368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSK-SFNRHYNLIPHKKIHTNHAP 446 (467)
T ss_pred CCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchh-hccCcccccccccccccCCc
Confidence 21 01111111222333332 5555566666666655555444 344555655 55556666666666665555
Q ss_pred cccCcc
Q psy13389 376 FKCSMC 381 (617)
Q Consensus 376 ~~C~~C 381 (617)
+.|..+
T Consensus 447 ~~~~~~ 452 (467)
T COG5048 447 LLCSIL 452 (467)
T ss_pred eeeccc
Confidence 444433
No 75
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=94.67 E-value=0.011 Score=34.93 Aligned_cols=21 Identities=43% Similarity=0.956 Sum_probs=10.7
Q ss_pred cccccccccccChHhHHHHHH
Q psy13389 404 FKCDICFKLFTKKSNLRTHIK 424 (617)
Q Consensus 404 ~~C~~C~~~f~~~~~l~~H~~ 424 (617)
|.|..|++.|.+...|..|++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~ 22 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMK 22 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTT
T ss_pred CCcccCCCCcCCHHHHHHHHc
Confidence 445555555555555555544
No 76
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=94.28 E-value=0.014 Score=34.42 Aligned_cols=22 Identities=36% Similarity=0.865 Sum_probs=18.3
Q ss_pred cccCccCCcCCCchhHHHHhhh
Q psy13389 376 FKCSMCDEGFPKKSVLKEHLRV 397 (617)
Q Consensus 376 ~~C~~C~~~f~~~~~l~~H~~~ 397 (617)
|.|..|++.|.+...|..|++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 6788888888888888888764
No 77
>KOG2482|consensus
Probab=93.50 E-value=0.078 Score=51.02 Aligned_cols=163 Identities=21% Similarity=0.348 Sum_probs=102.1
Q ss_pred hhHHHHHhhhcCC-CCccCCCCCCCccCChhHHHHHhhhccCCCCcccCccCCcCCCchhHHHHhhhhcCCCcccccccc
Q psy13389 332 SNLYIHLKLQHGV-NPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICF 410 (617)
Q Consensus 332 ~~l~~H~~~h~~~-~~~~C~~C~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~ 410 (617)
..|.+|++.-.+. ...+|-.|.......++..-.|+...|+-..=. +-....-..|..|++..- ..+.|-.|.
T Consensus 129 eaLeqqQ~Eredt~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGl----pDniVyvnelLehLkekL--~r~~CLyCe 202 (423)
T KOG2482|consen 129 EALEQQQKEREDTIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGL----PDNIVYVNELLEHLKEKL--ERLRCLYCE 202 (423)
T ss_pred HHHHHHHHHhcCCeeeeEEEEecchhcccHHHHHHHHHHHhhhccCC----CcceeeHHHHHHHHHHHH--hhheeeeec
Confidence 3455555443221 234577777655566666666665444311000 011222355666665432 347899999
Q ss_pred ccccChHhHHHHHHc--CC---C------------------------------------------------------CCC
Q psy13389 411 KLFTKKSNLRTHIKT--HE---P------------------------------------------------------IPC 431 (617)
Q Consensus 411 ~~f~~~~~l~~H~~~--h~---~------------------------------------------------------~~C 431 (617)
+.|..+..|+.||+. |. | ..|
T Consensus 203 kifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~C 282 (423)
T KOG2482|consen 203 KIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVC 282 (423)
T ss_pred cccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEE
Confidence 999999999999973 21 0 479
Q ss_pred ccccccccCchhHHHHHhhhCCCCccccccc--cCCC--------CCCCCcccccCccccccccchhHHHHHhhhhcCC
Q psy13389 432 DKCPEIFEKKTDLQEHVDKCHNLHEEDEEEG--LDEF--------DAPKEKSFNCSKCLNIVRIPVEIKSLVEKLTSEG 500 (617)
Q Consensus 432 ~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~--~~~~--------~~~~~k~f~C~~C~~~f~~~~~l~~H~~~~~~~~ 500 (617)
-+|...+.+...|.+||..+|.+....-... +..+ .....+.-.|..|.-.|..+..|..|+......+
T Consensus 283 LfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~k~l~ 361 (423)
T KOG2482|consen 283 LFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVEDKHLS 361 (423)
T ss_pred EeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcccccccc
Confidence 9999999999999999999997443322211 1111 0111234578999999999999999988655433
No 78
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.35 E-value=0.27 Score=39.98 Aligned_cols=95 Identities=22% Similarity=0.427 Sum_probs=50.4
Q ss_pred CCccCCccccccCChhhHHHHHhhhc--CCCCccCCCCCCCccCChhHHHHHhhhccCCCCcccCccCCcCCCchhHHHH
Q psy13389 317 KPHACSICTESFSQKSNLYIHLKLQH--GVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEH 394 (617)
Q Consensus 317 ~~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H 394 (617)
-|-.|+.|+-+..+...|.+-. || ..++|. .- .+. .....-.|--|...|........
T Consensus 14 LP~~CpiCgLtLVss~HLARSy--HHLfPl~~f~----------ev-~~~------~~~~~~~C~~C~~~f~~~~~~~~- 73 (112)
T TIGR00622 14 LPVECPICGLTLILSTHLARSY--HHLFPLKAFQ----------EI-PLE------EYNGSRFCFGCQGPFPKPPVSPF- 73 (112)
T ss_pred CCCcCCcCCCEEeccchHHHhh--hccCCCcccc----------cc-ccc------ccCCCCcccCcCCCCCCcccccc-
Confidence 4677888888777777776542 33 112221 00 000 00111247778887765431110
Q ss_pred hhhhcCCCccccccccccccChHhHHHHHHcCCCCCCcccc
Q psy13389 395 LRVSHNVNPFKCDICFKLFTKKSNLRTHIKTHEPIPCDKCP 435 (617)
Q Consensus 395 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~C~~C~ 435 (617)
..-.....|.|+.|...|=..-+.-.|...|. |+.|.
T Consensus 74 -~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~---CPGC~ 110 (112)
T TIGR00622 74 -DELKDSHRYVCAVCKNVFCVDCDVFVHESLHC---CPGCI 110 (112)
T ss_pred -cccccccceeCCCCCCccccccchhhhhhccC---CcCCC
Confidence 00122345778888877777777777776663 55554
No 79
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=91.93 E-value=0.089 Score=51.45 Aligned_cols=40 Identities=30% Similarity=0.511 Sum_probs=34.9
Q ss_pred cccccccccccceeeeccCCccchhhhhcccCcccccccccc
Q psy13389 508 EHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAG 549 (617)
Q Consensus 508 ~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~ 549 (617)
.+.++.++.|||||+|+.- ..++..+|++| |+.|.-+|..
T Consensus 202 ~nl~~~~~~ADIvv~AvGk-~~~i~~~~vk~-gavVIDvGin 241 (299)
T PLN02516 202 PDPESIVREADIVIAAAGQ-AMMIKGDWIKP-GAAVIDVGTN 241 (299)
T ss_pred CCHHHHHhhCCEEEEcCCC-cCccCHHHcCC-CCEEEEeecc
Confidence 3466788999999999855 57999999999 9999999986
No 80
>KOG4173|consensus
Probab=91.83 E-value=0.04 Score=48.90 Aligned_cols=87 Identities=17% Similarity=0.429 Sum_probs=43.8
Q ss_pred ccccc--ccccccChHhHHHHHHcCCCCCCccccccccCchhHHHHHhhhCCCCccccccccCCCCCCCCcccccC--cc
Q psy13389 404 FKCDI--CFKLFTKKSNLRTHIKTHEPIPCDKCPEIFEKKTDLQEHVDKCHNLHEEDEEEGLDEFDAPKEKSFNCS--KC 479 (617)
Q Consensus 404 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~~~~~k~f~C~--~C 479 (617)
|.|++ |...|.+...+..|..+-+.-.|.+|.+.|.+...|..|+...|- .-.+.....|...|.|- .|
T Consensus 80 ~~cqvagc~~~~d~lD~~E~hY~~~h~~sCs~C~r~~Pt~hLLd~HI~E~HD-------s~Fqa~veRG~dMy~ClvEgC 152 (253)
T KOG4173|consen 80 FACQVAGCCQVFDALDDYEHHYHTLHGNSCSFCKRAFPTGHLLDAHILEWHD-------SLFQALVERGQDMYQCLVEGC 152 (253)
T ss_pred ccccccchHHHHhhhhhHHHhhhhcccchhHHHHHhCCchhhhhHHHHHHHH-------HHHHHHHHcCccHHHHHHHhh
Confidence 44554 445555555555555444444566666666666666666555442 00001111234455663 36
Q ss_pred ccccccchhHHHHHhhhh
Q psy13389 480 LNIVRIPVEIKSLVEKLT 497 (617)
Q Consensus 480 ~~~f~~~~~l~~H~~~~~ 497 (617)
+..|.+.....+|+-+++
T Consensus 153 t~KFkT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 153 TEKFKTSRDRKDHMIRMH 170 (253)
T ss_pred hhhhhhhhhhhhHHHHhc
Confidence 666666666666655544
No 81
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=91.71 E-value=0.13 Score=29.63 Aligned_cols=18 Identities=33% Similarity=0.683 Sum_probs=8.2
Q ss_pred ccccccccccChHhHHHHH
Q psy13389 405 KCDICFKLFTKKSNLRTHI 423 (617)
Q Consensus 405 ~C~~C~~~f~~~~~l~~H~ 423 (617)
.|+.||+.| ....|.+|+
T Consensus 4 ~C~~CgR~F-~~~~l~~H~ 21 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHE 21 (25)
T ss_pred cCCCCCCEE-CHHHHHHHH
Confidence 344444444 334444444
No 82
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=91.20 E-value=0.16 Score=29.22 Aligned_cols=21 Identities=29% Similarity=0.697 Sum_probs=18.5
Q ss_pred CCCccccccccCchhHHHHHhh
Q psy13389 429 IPCDKCPEIFEKKTDLQEHVDK 450 (617)
Q Consensus 429 ~~C~~C~~~f~~~~~l~~H~~~ 450 (617)
.+|+.||+.| ....|.+|+..
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 5799999999 88899999865
No 83
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=91.05 E-value=0.091 Score=46.49 Aligned_cols=42 Identities=29% Similarity=0.445 Sum_probs=30.0
Q ss_pred cccccccccccceeeeccCCccchhhhhcccCcccccccccccc
Q psy13389 508 EHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLN 551 (617)
Q Consensus 508 ~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~~ 551 (617)
.+.++.++.|||||+|+.. .-+++.+|++| |+.|.-+|....
T Consensus 71 ~~l~~~~~~ADIVVsa~G~-~~~i~~~~ik~-gavVIDvG~~~~ 112 (160)
T PF02882_consen 71 KNLQEITRRADIVVSAVGK-PNLIKADWIKP-GAVVIDVGINYV 112 (160)
T ss_dssp SSHHHHHTTSSEEEE-SSS-TT-B-GGGS-T-TEEEEE--CEEE
T ss_pred CcccceeeeccEEeeeecc-ccccccccccC-CcEEEecCCccc
Confidence 3567888999999999965 44689999999 999999999743
No 84
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=90.22 E-value=0.18 Score=31.65 Aligned_cols=20 Identities=30% Similarity=0.783 Sum_probs=10.2
Q ss_pred cccccccccccChHhHHHHH
Q psy13389 404 FKCDICFKLFTKKSNLRTHI 423 (617)
Q Consensus 404 ~~C~~C~~~f~~~~~l~~H~ 423 (617)
|.|.+|++.|.+...+..|+
T Consensus 4 ~~C~~C~~~~~~~~~~~~H~ 23 (35)
T smart00451 4 FYCKLCNVTFTDEISVEAHL 23 (35)
T ss_pred eEccccCCccCCHHHHHHHH
Confidence 44555555555555555554
No 85
>KOG2785|consensus
Probab=89.71 E-value=0.39 Score=47.47 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=23.1
Q ss_pred ccccCCCCccccCChHHHHHHHHhhcC
Q psy13389 55 KKFKCNICPKRYARKNRLTNHLRTHEA 81 (617)
Q Consensus 55 ~~~~C~~C~~~f~~~~~l~~H~~~h~~ 81 (617)
-|-.|-+|++.+.+...-..||..++.
T Consensus 165 ~Pt~CLfC~~~~k~~e~~~~HM~~~Hg 191 (390)
T KOG2785|consen 165 IPTDCLFCDKKSKSLEENLKHMFKEHG 191 (390)
T ss_pred CCcceeecCCCcccHHHHHHHHhhccC
Confidence 356799999999999999999988763
No 86
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.56 E-value=0.56 Score=38.17 Aligned_cols=76 Identities=21% Similarity=0.363 Sum_probs=47.7
Q ss_pred CcccCccCCcCCCchhHHHHhhhhc--CCC------------ccccccccccccChHhHHHH-HHcCCCCCCcccccccc
Q psy13389 375 PFKCSMCDEGFPKKSVLKEHLRVSH--NVN------------PFKCDICFKLFTKKSNLRTH-IKTHEPIPCDKCPEIFE 439 (617)
Q Consensus 375 ~~~C~~C~~~f~~~~~l~~H~~~h~--~~~------------~~~C~~C~~~f~~~~~l~~H-~~~h~~~~C~~C~~~f~ 439 (617)
|-.|++|+-+..+...|.+-. || ..+ .-.|--|...|........= +..-..|.|+.|...|-
T Consensus 15 P~~CpiCgLtLVss~HLARSy--HHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC 92 (112)
T TIGR00622 15 PVECPICGLTLILSTHLARSY--HHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFC 92 (112)
T ss_pred CCcCCcCCCEEeccchHHHhh--hccCCCcccccccccccCCCCcccCcCCCCCCcccccccccccccceeCCCCCCccc
Confidence 455666666665555555431 21 111 12499999999765321100 12234799999999999
Q ss_pred CchhHHHHHhhhCC
Q psy13389 440 KKTDLQEHVDKCHN 453 (617)
Q Consensus 440 ~~~~l~~H~~~~H~ 453 (617)
-.-++-.|... |+
T Consensus 93 ~dCD~fiHe~L-h~ 105 (112)
T TIGR00622 93 VDCDVFVHESL-HC 105 (112)
T ss_pred cccchhhhhhc-cC
Confidence 99999999876 65
No 87
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=89.47 E-value=0.25 Score=31.03 Aligned_cols=23 Identities=26% Similarity=0.678 Sum_probs=20.3
Q ss_pred CcccCccCCcCCCchhHHHHhhh
Q psy13389 375 PFKCSMCDEGFPKKSVLKEHLRV 397 (617)
Q Consensus 375 ~~~C~~C~~~f~~~~~l~~H~~~ 397 (617)
+|.|.+|++.|.+...+..|+..
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccccCCccCCHHHHHHHHCh
Confidence 58899999999999999999864
No 88
>KOG4173|consensus
Probab=89.39 E-value=0.14 Score=45.63 Aligned_cols=79 Identities=27% Similarity=0.538 Sum_probs=52.1
Q ss_pred ceecCC--CCCcCCCHHHHHHHHHhcCCCCCcccCccccccCCHHHHHHHHHHh----------CCCCCccCCc--cccc
Q psy13389 262 RYLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIH----------TNSKPHACSI--CTES 327 (617)
Q Consensus 262 ~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h----------~~~~~~~C~~--C~~~ 327 (617)
.|.|++ |...|........|..+-++. .|..|.+.|.+...|..|+.-. -|...|+|-. |+..
T Consensus 79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~K 155 (253)
T KOG4173|consen 79 AFACQVAGCCQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEK 155 (253)
T ss_pred cccccccchHHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhh
Confidence 455654 556666666666666554443 5777777777777777776432 2344577754 8888
Q ss_pred cCChhhHHHHHhhhcC
Q psy13389 328 FSQKSNLYIHLKLQHG 343 (617)
Q Consensus 328 f~~~~~l~~H~~~h~~ 343 (617)
|.+...-+.|+-..|.
T Consensus 156 FkT~r~RkdH~I~~Hk 171 (253)
T KOG4173|consen 156 FKTSRDRKDHMIRMHK 171 (253)
T ss_pred hhhhhhhhhHHHHhcc
Confidence 8888888888766654
No 89
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.07 E-value=0.16 Score=49.50 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=35.0
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+..+.++.|||||+|+.... ++.++|++| |+.|.-+|...
T Consensus 194 ~l~~~~~~ADIvI~AvG~p~-~i~~~~ik~-gavVIDvGi~~ 233 (284)
T PRK14190 194 NLAELTKQADILIVAVGKPK-LITADMVKE-GAVVIDVGVNR 233 (284)
T ss_pred hHHHHHHhCCEEEEecCCCC-cCCHHHcCC-CCEEEEeeccc
Confidence 45678899999999997666 799999999 99999999874
No 90
>KOG2893|consensus
Probab=88.95 E-value=0.11 Score=47.22 Aligned_cols=41 Identities=34% Similarity=0.787 Sum_probs=31.8
Q ss_pred cCccCCcCCCchhHHHHhhhhcCCCccccccccccccChHhHHHH
Q psy13389 378 CSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTH 422 (617)
Q Consensus 378 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H 422 (617)
|.+|++.|....-|.+|++..| |+|.+|-|...+--.|..|
T Consensus 13 cwycnrefddekiliqhqkakh----fkchichkkl~sgpglsih 53 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQKAKH----FKCHICHKKLFSGPGLSIH 53 (341)
T ss_pred eeecccccchhhhhhhhhhhcc----ceeeeehhhhccCCCceee
Confidence 8888888888888888887654 8888887776666666655
No 91
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.94 E-value=0.18 Score=49.10 Aligned_cols=40 Identities=30% Similarity=0.306 Sum_probs=34.7
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+..+.++.|||||+|++.. -++..+|++| |+.|..+|...
T Consensus 194 ~l~~~~~~ADIVV~avG~~-~~i~~~~ik~-gavVIDVGin~ 233 (285)
T PRK14189 194 DLAAHTRQADIVVAAVGKR-NVLTADMVKP-GATVIDVGMNR 233 (285)
T ss_pred CHHHHhhhCCEEEEcCCCc-CccCHHHcCC-CCEEEEccccc
Confidence 4667889999999999854 4799999999 99999999863
No 92
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=88.92 E-value=0.17 Score=45.46 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=34.7
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCcccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAG 549 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~ 549 (617)
...+.+..|||||+||++.. +|..+|+++ |+.|.-+|..
T Consensus 80 ~l~~~l~~aDiVIsat~~~~-ii~~~~~~~-~~viIDla~p 118 (168)
T cd01080 80 NLKEHTKQADIVIVAVGKPG-LVKGDMVKP-GAVVIDVGIN 118 (168)
T ss_pred hHHHHHhhCCEEEEcCCCCc-eecHHHccC-CeEEEEccCC
Confidence 45567899999999999999 999999999 9999888876
No 93
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.66 E-value=0.24 Score=48.71 Aligned_cols=69 Identities=22% Similarity=0.192 Sum_probs=50.5
Q ss_pred cCccccccccchhHHHHHhhhhcCCCCCccccc----ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 476 CSKCLNIVRIPVEIKSLVEKLTSEGVPAVQAYE----HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 476 C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~----~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
.-+-|++..--..+..++... +..+.+.. +++++++.||||++|++.+. ++...|++| |+.|..+|...
T Consensus 161 V~viGrs~~mG~PmA~~L~~~----g~tVtv~~~rT~~l~e~~~~ADIVIsavg~~~-~v~~~~lk~-GavVIDvGin~ 233 (296)
T PRK14188 161 AVVIGRSNLVGKPMAQLLLAA----NATVTIAHSRTRDLPAVCRRADILVAAVGRPE-MVKGDWIKP-GATVIDVGINR 233 (296)
T ss_pred EEEEcCCcchHHHHHHHHHhC----CCEEEEECCCCCCHHHHHhcCCEEEEecCChh-hcchheecC-CCEEEEcCCcc
Confidence 445566666666666666532 23344443 56778899999999998865 789999999 99999999863
No 94
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.73 E-value=0.23 Score=48.17 Aligned_cols=40 Identities=33% Similarity=0.366 Sum_probs=34.9
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+..+.++.|||||+|+.... ++..+|++| |+.|.-+|...
T Consensus 193 ~l~~~~~~ADIvI~AvG~~~-~i~~~~vk~-GavVIDvGin~ 232 (284)
T PRK14170 193 DLPQVAKEADILVVATGLAK-FVKKDYIKP-GAIVIDVGMDR 232 (284)
T ss_pred CHHHHHhhCCEEEEecCCcC-ccCHHHcCC-CCEEEEccCcc
Confidence 45678899999999997766 599999999 99999999874
No 95
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.56 E-value=0.22 Score=48.40 Aligned_cols=40 Identities=25% Similarity=0.280 Sum_probs=34.8
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+.++.++.|||||+|+... .++..+|++| |+.|.-+|...
T Consensus 193 ~l~~~~~~ADIvV~AvG~p-~~i~~~~ik~-GavVIDvGin~ 232 (287)
T PRK14181 193 NLTEILKTADIIIAAIGVP-LFIKEEMIAE-KAVIVDVGTSR 232 (287)
T ss_pred CHHHHHhhCCEEEEccCCc-CccCHHHcCC-CCEEEEecccc
Confidence 4667889999999999766 5799999999 99999999863
No 96
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.35 E-value=0.23 Score=48.72 Aligned_cols=40 Identities=25% Similarity=0.265 Sum_probs=35.5
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+.+++++.|||||+|+..+ .+|..+|+++ |+.|..+|.+.
T Consensus 199 ~l~~~~~~ADIvI~Avg~~-~li~~~~vk~-GavVIDVgi~~ 238 (295)
T PRK14174 199 DIPSYTRQADILIAAIGKA-RFITADMVKP-GAVVIDVGINR 238 (295)
T ss_pred hHHHHHHhCCEEEEecCcc-CccCHHHcCC-CCEEEEeeccc
Confidence 4677899999999999777 8899999999 99999999874
No 97
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.61 E-value=0.28 Score=47.69 Aligned_cols=40 Identities=25% Similarity=0.271 Sum_probs=35.0
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+..+.++.|||||+|+.... ++.++|++| |+.|.-+|...
T Consensus 196 ~l~~~~k~ADIvV~AvGkp~-~i~~~~ik~-GavVIDvGin~ 235 (284)
T PRK14193 196 DLAAHTRRADIIVAAAGVAH-LVTADMVKP-GAAVLDVGVSR 235 (284)
T ss_pred CHHHHHHhCCEEEEecCCcC-ccCHHHcCC-CCEEEEccccc
Confidence 56678899999999998774 799999999 99999999873
No 98
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.24 E-value=0.27 Score=47.67 Aligned_cols=41 Identities=29% Similarity=0.331 Sum_probs=35.8
Q ss_pred cccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 508 EHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 508 ~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
.+..+.++.|||||.|++.+ .++..+|++| |+.|.-+|.+.
T Consensus 187 ~~L~~~~~~ADIvI~Avgk~-~lv~~~~vk~-GavVIDVgi~~ 227 (279)
T PRK14178 187 ENLKAELRQADILVSAAGKA-GFITPDMVKP-GATVIDVGINQ 227 (279)
T ss_pred hHHHHHHhhCCEEEECCCcc-cccCHHHcCC-CcEEEEeeccc
Confidence 35667889999999999766 7899999999 99999999874
No 99
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.93 E-value=0.32 Score=47.43 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=34.6
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+.++.++.|||||+|+... -++.++|+++ |+.|.-+|...
T Consensus 191 ~l~~~~~~ADIvIsAvGkp-~~i~~~~vk~-GavVIDVGin~ 230 (287)
T PRK14173 191 DLPAVTRRADVLVVAVGRP-HLITPEMVRP-GAVVVDVGINR 230 (287)
T ss_pred CHHHHHhhCCEEEEecCCc-CccCHHHcCC-CCEEEEccCcc
Confidence 4667889999999999766 5679999999 99999999873
No 100
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.73 E-value=0.34 Score=47.35 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=34.8
Q ss_pred cccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 508 EHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 508 ~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
.+..+.++.|||||+|+..+. ++..+|++| |+.|.-+|...
T Consensus 196 ~nl~~~~~~ADIvIsAvGkp~-~i~~~~vk~-gavVIDvGin~ 236 (293)
T PRK14185 196 KNLKKECLEADIIIAALGQPE-FVKADMVKE-GAVVIDVGTTR 236 (293)
T ss_pred CCHHHHHhhCCEEEEccCCcC-ccCHHHcCC-CCEEEEecCcc
Confidence 346678899999999997666 589999999 99999999863
No 101
>PLN00203 glutamyl-tRNA reductase
Probab=85.72 E-value=0.34 Score=51.87 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=43.7
Q ss_pred cccccccccccccceeeeccCCccchhhhhccc---------Cccccccccccccccccchhhhh--cCce-EEEecchh
Q psy13389 506 AYEHGEDAARDADILVTATYSSVPVLKYEWLKK---------KDAHINAVGAGLNHHSELDAAIY--SHSS-IFFDSEAA 573 (617)
Q Consensus 506 ~~~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~---------~g~~v~~~g~~~~~~~e~~~~~~--~~~~-~~~d~~~~ 573 (617)
...+..+++.++|||++||++..|+|..+|+++ ++..+.-++. | +.+++++- .... +-+|+..+
T Consensus 319 ~~~dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAv--P--RdIdp~v~~l~~v~lydiDdL~~ 394 (519)
T PLN00203 319 PLDEMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISV--P--RNVGACVSELESARVYNVDDLKE 394 (519)
T ss_pred cHhhHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCC--C--CCCccccccCCCCeEEEeccHHH
Confidence 335667788999999999999999999999854 1234544444 3 56777663 3333 44666544
Q ss_pred h
Q psy13389 574 A 574 (617)
Q Consensus 574 ~ 574 (617)
.
T Consensus 395 i 395 (519)
T PLN00203 395 V 395 (519)
T ss_pred H
Confidence 3
No 102
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.69 E-value=0.5 Score=45.93 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=34.0
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+.++.++.|||||+|+.... ++..+|++| |+.|.-+|...
T Consensus 195 ~l~~~~~~ADIvIsAvGk~~-~i~~~~ik~-gavVIDvGin~ 234 (284)
T PRK14177 195 NLPSIVRQADIIVGAVGKPE-FIKADWISE-GAVLLDAGYNP 234 (284)
T ss_pred CHHHHHhhCCEEEEeCCCcC-ccCHHHcCC-CCEEEEecCcc
Confidence 45678899999999986655 488999999 99999999864
No 103
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=85.37 E-value=0.56 Score=29.07 Aligned_cols=9 Identities=44% Similarity=1.232 Sum_probs=4.3
Q ss_pred CCccCCCCC
Q psy13389 345 NPFKCDVCP 353 (617)
Q Consensus 345 ~~~~C~~C~ 353 (617)
.++.|++||
T Consensus 16 ~~~~CP~Cg 24 (33)
T cd00350 16 APWVCPVCG 24 (33)
T ss_pred CCCcCcCCC
Confidence 344555554
No 104
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.26 E-value=0.34 Score=47.58 Aligned_cols=40 Identities=30% Similarity=0.464 Sum_probs=35.2
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
++.++++.||||++|++.. +++..+|++| |+.|.-+|...
T Consensus 195 ~l~e~~~~ADIVIsavg~~-~~v~~~~ik~-GaiVIDvgin~ 234 (301)
T PRK14194 195 DAKALCRQADIVVAAVGRP-RLIDADWLKP-GAVVIDVGINR 234 (301)
T ss_pred CHHHHHhcCCEEEEecCCh-hcccHhhccC-CcEEEEecccc
Confidence 5777889999999999776 7899999999 99999999763
No 105
>KOG4230|consensus
Probab=85.18 E-value=0.65 Score=48.44 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=45.7
Q ss_pred cccccccccccceeeeccCCccchhhhhcccCccccccccccccccccchhhhhcCc-eEEEec-chhhhcchhhhhhcc
Q psy13389 508 EHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHS-SIFFDS-EAAARGELKGLYEQV 585 (617)
Q Consensus 508 ~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~~-~~~~d~-~~~~~~e~~~~~~~~ 585 (617)
.+..+.+..|||||.|+.-+ -+++++|++| |+.|+-+|-.- +++.--+.. ++|=|- .+.+ .|...+|.++
T Consensus 197 ~~lae~v~~ADIvIvAiG~P-efVKgdWiKp-GavVIDvGINy-----vpD~~Kksg~klvGDVdfe~A-kevas~ITPV 268 (935)
T KOG4230|consen 197 RNLAEKVSRADIVIVAIGQP-EFVKGDWIKP-GAVVIDVGINY-----VPDPSKKSGFKLVGDVDFESA-KEVASFITPV 268 (935)
T ss_pred ccHHHHhccCCEEEEEcCCc-ceeecccccC-CcEEEEccccc-----cCCCCCcccceEeeecchHhh-hhhhhccccC
Confidence 35677888999999888443 3689999999 99999999862 344333333 455442 2222 3334455443
Q ss_pred c
Q psy13389 586 P 586 (617)
Q Consensus 586 ~ 586 (617)
|
T Consensus 269 P 269 (935)
T KOG4230|consen 269 P 269 (935)
T ss_pred C
Confidence 3
No 106
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.99 E-value=0.37 Score=47.23 Aligned_cols=40 Identities=30% Similarity=0.422 Sum_probs=33.6
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+..+.++.|||||+|+.-. -++.++|++| |+.|.-+|...
T Consensus 201 ~l~~~~~~ADIvVsAvGkp-~~i~~~~ik~-gavVIDvGin~ 240 (297)
T PRK14168 201 NLARHCQRADILIVAAGVP-NLVKPEWIKP-GATVIDVGVNR 240 (297)
T ss_pred CHHHHHhhCCEEEEecCCc-CccCHHHcCC-CCEEEecCCCc
Confidence 4667889999999999544 4699999999 99999999763
No 107
>KOG2893|consensus
Probab=84.99 E-value=0.33 Score=44.26 Aligned_cols=41 Identities=24% Similarity=0.554 Sum_probs=17.3
Q ss_pred cCcCccccCChHHHHHHHHhccCCCCcccCCCcccccCchhhhhh
Q psy13389 181 CSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRH 225 (617)
Q Consensus 181 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H 225 (617)
|.+|++.|....-|.+|++.. .|+|.+|.+...+-..|..|
T Consensus 13 cwycnrefddekiliqhqkak----hfkchichkkl~sgpglsih 53 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQKAK----HFKCHICHKKLFSGPGLSIH 53 (341)
T ss_pred eeecccccchhhhhhhhhhhc----cceeeeehhhhccCCCceee
Confidence 444444444444444444321 24444444444444444333
No 108
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.90 E-value=0.38 Score=46.69 Aligned_cols=40 Identities=30% Similarity=0.357 Sum_probs=34.4
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+..+.++.|||||+|+.. ..++..+|+++ |+.|.-+|...
T Consensus 193 nl~~~~~~ADIvI~AvGk-~~~i~~~~ik~-gaiVIDvGin~ 232 (282)
T PRK14182 193 DLAGEVGRADILVAAIGK-AELVKGAWVKE-GAVVIDVGMNR 232 (282)
T ss_pred CHHHHHhhCCEEEEecCC-cCccCHHHcCC-CCEEEEeecee
Confidence 456678899999999975 55799999999 99999999874
No 109
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=84.88 E-value=0.67 Score=40.00 Aligned_cols=54 Identities=28% Similarity=0.412 Sum_probs=36.7
Q ss_pred ccccccccccccccceeeeccCCccchhhhhcccCc---cccccccccccccccchhhhhc
Q psy13389 505 QAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKD---AHINAVGAGLNHHSELDAAIYS 562 (617)
Q Consensus 505 ~~~~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g---~~v~~~g~~~~~~~e~~~~~~~ 562 (617)
....+..+++..+|||++||++..+.+..+++.+.. ..|.-++. | +.+++.+-.
T Consensus 64 ~~~~~~~~~~~~~DivI~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~--P--r~i~~~v~~ 120 (135)
T PF01488_consen 64 IPLEDLEEALQEADIVINATPSGMPIITEEMLKKASKKLRLVIDLAV--P--RDIDPEVAE 120 (135)
T ss_dssp EEGGGHCHHHHTESEEEE-SSTTSTSSTHHHHTTTCHHCSEEEES-S--S---SB-TTCGG
T ss_pred eeHHHHHHHHhhCCeEEEecCCCCcccCHHHHHHHHhhhhceecccc--C--CCCChhhcc
Confidence 344667778899999999999999999999998822 35666653 3 346766533
No 110
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.69 E-value=0.4 Score=46.96 Aligned_cols=40 Identities=30% Similarity=0.302 Sum_probs=34.6
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+.++.++.|||||+|+... .++..+|+++ |+.|.-+|...
T Consensus 194 ~l~~~~~~ADIvIsAvGkp-~~i~~~~ik~-gavVIDvGin~ 233 (297)
T PRK14186 194 DLASITREADILVAAAGRP-NLIGAEMVKP-GAVVVDVGIHR 233 (297)
T ss_pred CHHHHHhhCCEEEEccCCc-CccCHHHcCC-CCEEEEecccc
Confidence 4567889999999999855 5799999999 99999999874
No 111
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=84.15 E-value=0.43 Score=47.52 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=34.4
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+..+.++.|||||+|+.... ++.++|++| |+.|.-||...
T Consensus 250 nl~~~~~~ADIvIsAvGkp~-~v~~d~vk~-GavVIDVGin~ 289 (345)
T PLN02897 250 DPEQITRKADIVIAAAGIPN-LVRGSWLKP-GAVVIDVGTTP 289 (345)
T ss_pred CHHHHHhhCCEEEEccCCcC-ccCHHHcCC-CCEEEEccccc
Confidence 46678899999999997665 589999999 99999999873
No 112
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=84.15 E-value=0.43 Score=47.77 Aligned_cols=41 Identities=27% Similarity=0.483 Sum_probs=34.4
Q ss_pred cccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 508 EHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 508 ~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
.+..+.++.|||||+|+.... ++..+|++| |+.|+-||-..
T Consensus 266 ~nl~~~~r~ADIVIsAvGkp~-~i~~d~vK~-GAvVIDVGIn~ 306 (364)
T PLN02616 266 KNPEEITREADIIISAVGQPN-MVRGSWIKP-GAVVIDVGINP 306 (364)
T ss_pred CCHHHHHhhCCEEEEcCCCcC-cCCHHHcCC-CCEEEeccccc
Confidence 356678899999999996554 599999999 99999999863
No 113
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=84.07 E-value=0.56 Score=41.34 Aligned_cols=52 Identities=33% Similarity=0.351 Sum_probs=34.7
Q ss_pred cccccccccccceeeeccCCccchh---hhhcccCccccccccccccccccchhhhhcCc
Q psy13389 508 EHGEDAARDADILVTATYSSVPVLK---YEWLKKKDAHINAVGAGLNHHSELDAAIYSHS 564 (617)
Q Consensus 508 ~~~~~~~~~adiv~~~t~s~~p~~~---~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~~ 564 (617)
...++++..+|||+|||... .++. ...+++ |+.|..+|+.. .||+-+.+...
T Consensus 70 ~~~~~a~~~adi~vtaTG~~-~vi~~e~~~~mkd-gail~n~Gh~d---~Eid~~~L~~~ 124 (162)
T PF00670_consen 70 MTLEEALRDADIFVTATGNK-DVITGEHFRQMKD-GAILANAGHFD---VEIDVDALEAN 124 (162)
T ss_dssp E-HHHHTTT-SEEEE-SSSS-SSB-HHHHHHS-T-TEEEEESSSST---TSBTHHHHHTC
T ss_pred cCHHHHHhhCCEEEECCCCc-cccCHHHHHHhcC-CeEEeccCcCc---eeEeecccccc
Confidence 35788999999999999764 3333 334678 99999999874 47887666554
No 114
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.86 E-value=0.45 Score=46.36 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=34.0
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCcccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAG 549 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~ 549 (617)
+..+.++.|||||+|+... -++.++|++| |+.|.-+|-.
T Consensus 195 ~L~~~~~~ADIvV~AvGkp-~~i~~~~vk~-GavVIDvGin 233 (288)
T PRK14171 195 NLSSITSKADIVVAAIGSP-LKLTAEYFNP-ESIVIDVGIN 233 (288)
T ss_pred CHHHHHhhCCEEEEccCCC-CccCHHHcCC-CCEEEEeecc
Confidence 4566789999999999855 5899999999 9999999976
No 115
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.45 E-value=0.48 Score=46.23 Aligned_cols=39 Identities=26% Similarity=0.282 Sum_probs=33.7
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCcccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAG 549 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~ 549 (617)
+..+.++.||||++|++... ++..+|+++ |+.|.-+|..
T Consensus 194 ~l~~~~~~ADIVIsAvg~p~-~i~~~~vk~-gavVIDvGi~ 232 (286)
T PRK14175 194 DMASYLKDADVIVSAVGKPG-LVTKDVVKE-GAVIIDVGNT 232 (286)
T ss_pred hHHHHHhhCCEEEECCCCCc-ccCHHHcCC-CcEEEEcCCC
Confidence 35678899999999998866 478899999 9999999985
No 116
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=82.97 E-value=1.8 Score=35.70 Aligned_cols=24 Identities=17% Similarity=0.602 Sum_probs=17.9
Q ss_pred CceecCCCCCcCCCHHHHHHHHHhc
Q psy13389 261 KRYLCTMCPKCFTRKDDLNRHMRNH 285 (617)
Q Consensus 261 ~~~~C~~C~~~f~~~~~L~~H~~~h 285 (617)
+...|..|+..... +.+..|++..
T Consensus 10 ~vlIC~~C~~av~~-~~v~~HL~~~ 33 (109)
T PF12013_consen 10 RVLICRQCQYAVQP-SEVESHLRKR 33 (109)
T ss_pred CEEEeCCCCcccCc-hHHHHHHHHh
Confidence 45678888887765 7788888843
No 117
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=82.88 E-value=2.6 Score=34.73 Aligned_cols=25 Identities=12% Similarity=0.550 Sum_probs=18.8
Q ss_pred CcccCCCCccccCChhHHHHHHhhcc
Q psy13389 233 KPFLCSMCAKCFSRKDDLNRHMKIHE 258 (617)
Q Consensus 233 ~~~~C~~C~~~f~~~~~L~~H~~~h~ 258 (617)
+...|..|+..... ..+..|++..+
T Consensus 10 ~vlIC~~C~~av~~-~~v~~HL~~~H 34 (109)
T PF12013_consen 10 RVLICRQCQYAVQP-SEVESHLRKRH 34 (109)
T ss_pred CEEEeCCCCcccCc-hHHHHHHHHhc
Confidence 34679999988765 88899998443
No 118
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.85 E-value=0.51 Score=45.78 Aligned_cols=40 Identities=28% Similarity=0.361 Sum_probs=34.2
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+..+.++.|||||+|+.... ++..+|++| |+.|.-+|...
T Consensus 194 ~l~~~~~~ADIvIsAvGkp~-~i~~~~ik~-gavVIDvGin~ 233 (278)
T PRK14172 194 NLKEVCKKADILVVAIGRPK-FIDEEYVKE-GAIVIDVGTSS 233 (278)
T ss_pred CHHHHHhhCCEEEEcCCCcC-ccCHHHcCC-CcEEEEeeccc
Confidence 45667899999999997666 599999999 99999999763
No 119
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.67 E-value=0.51 Score=45.85 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=34.3
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+..+.++.|||||+|+.... ++..+|+++ |+.|.-+|...
T Consensus 192 ~l~~~~~~ADIvI~AvG~p~-~i~~~~vk~-GavVIDvGin~ 231 (282)
T PRK14169 192 NLKQLTKEADILVVAVGVPH-FIGADAVKP-GAVVIDVGISR 231 (282)
T ss_pred CHHHHHhhCCEEEEccCCcC-ccCHHHcCC-CcEEEEeeccc
Confidence 46678899999999997665 589999999 99999999863
No 120
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.67 E-value=0.53 Score=46.12 Aligned_cols=73 Identities=18% Similarity=0.144 Sum_probs=46.2
Q ss_pred cCccccccccchhHHHHHhhhhcCCCCCcccc----cccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 476 CSKCLNIVRIPVEIKSLVEKLTSEGVPAVQAY----EHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 476 C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~----~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+-+-|++-.--.-|...+......+...+..+ .+..+.++.|||||+|+.-.. ++.++|+++ |+.|.-+|-..
T Consensus 160 vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~~l~~~~~~ADIvIsAvGkp~-~i~~~~ik~-gaiVIDvGin~ 236 (297)
T PRK14167 160 VVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTDDLAAKTRRADIVVAAAGVPE-LIDGSMLSE-GATVIDVGINR 236 (297)
T ss_pred EEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcC-ccCHHHcCC-CCEEEEccccc
Confidence 34445555554445444432210012223322 345667899999999886555 789999999 99999999763
No 121
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.58 E-value=0.52 Score=45.74 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=33.6
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+..+.++.|||||+|+.-.. ++..+|++| |+.|.-+|...
T Consensus 193 ~l~~~~~~ADIvV~AvGkp~-~i~~~~vk~-gavvIDvGin~ 232 (281)
T PRK14183 193 DLKAHTKKADIVIVGVGKPN-LITEDMVKE-GAIVIDIGINR 232 (281)
T ss_pred CHHHHHhhCCEEEEecCccc-ccCHHHcCC-CcEEEEeeccc
Confidence 45667899999999995444 689999999 99999999763
No 122
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.57 E-value=0.54 Score=45.98 Aligned_cols=40 Identities=38% Similarity=0.480 Sum_probs=34.2
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+..+.++.|||||+|+.... ++.++|+++ |+.|.-+|...
T Consensus 196 ~l~~~~~~ADIvVsAvGkp~-~i~~~~ik~-gaiVIDVGin~ 235 (294)
T PRK14187 196 DLADYCSKADILVAAVGIPN-FVKYSWIKK-GAIVIDVGINS 235 (294)
T ss_pred CHHHHHhhCCEEEEccCCcC-ccCHHHcCC-CCEEEEecccc
Confidence 45668899999999997665 589999999 99999999863
No 123
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.38 E-value=0.46 Score=46.24 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=33.7
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+..+.++.|||||+|+.... ++..+|++| |+.|.-+|...
T Consensus 193 ~l~~~~~~ADIvV~AvG~p~-~i~~~~vk~-GavVIDvGi~~ 232 (285)
T PRK14191 193 DLSFYTQNADIVCVGVGKPD-LIKASMVKK-GAVVVDIGINR 232 (285)
T ss_pred HHHHHHHhCCEEEEecCCCC-cCCHHHcCC-CcEEEEeeccc
Confidence 34567899999999996655 588999999 99999999863
No 124
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=81.57 E-value=0.8 Score=31.42 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=27.6
Q ss_pred CCCCCcccccCccccccccchhHHHHHhhhhc
Q psy13389 467 DAPKEKSFNCSKCLNIVRIPVEIKSLVEKLTS 498 (617)
Q Consensus 467 ~~~~~k~f~C~~C~~~f~~~~~l~~H~~~~~~ 498 (617)
+..||--++||-||..|+......+|+...+.
T Consensus 11 ~RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~ 42 (65)
T COG4049 11 DRDGEEFLRCPRCGMVFRRRKDYIRHVNKAHG 42 (65)
T ss_pred ccCCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence 34578889999999999999999999987664
No 125
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.54 E-value=0.64 Score=45.20 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=34.1
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+..+.++.|||||+|+....- +..+|+++ |+.|.-+|...
T Consensus 194 dl~~~~k~ADIvIsAvGkp~~-i~~~~vk~-gavVIDvGin~ 233 (282)
T PRK14180 194 DLKSHTTKADILIVAVGKPNF-ITADMVKE-GAVVIDVGINH 233 (282)
T ss_pred CHHHHhhhcCEEEEccCCcCc-CCHHHcCC-CcEEEEecccc
Confidence 455678999999999976664 88999999 99999999863
No 126
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=81.44 E-value=0.87 Score=47.44 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=39.5
Q ss_pred ccccccccccccceeeeccCCccchhhhhcccCccccccccccccccccchhhhhc
Q psy13389 507 YEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYS 562 (617)
Q Consensus 507 ~~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~ 562 (617)
.+...+++..|||||+||+|+.|+|..+.++.++.++.-++-. +.++|++-.
T Consensus 233 ~~~l~~~l~~aDiVI~aT~a~~~vi~~~~~~~~~~~~iDLavP----Rdidp~v~~ 284 (414)
T PRK13940 233 LSELPQLIKKADIIIAAVNVLEYIVTCKYVGDKPRVFIDISIP----QALDPKLGE 284 (414)
T ss_pred HHHHHHHhccCCEEEECcCCCCeeECHHHhCCCCeEEEEeCCC----CCCCccccC
Confidence 3556778889999999999999999988776545666666543 568877743
No 127
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.69 E-value=0.68 Score=45.05 Aligned_cols=69 Identities=13% Similarity=0.097 Sum_probs=45.5
Q ss_pred cCccccccccchhHHHHHhhhhcCCCCCcccc----cccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 476 CSKCLNIVRIPVEIKSLVEKLTSEGVPAVQAY----EHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 476 C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~----~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
.-+-|++..--.-|...+... ...+..+ .+..+.++.|||||+|+.... ++..+|++| |+.|.-+|-..
T Consensus 160 vvVvGrS~iVGkPla~lL~~~----~atVt~chs~T~nl~~~~~~ADIvIsAvGkp~-~i~~~~vk~-GavVIDvGin~ 232 (282)
T PRK14166 160 AVIIGASNIVGRPMATMLLNA----GATVSVCHIKTKDLSLYTRQADLIIVAAGCVN-LLRSDMVKE-GVIVVDVGINR 232 (282)
T ss_pred EEEECCCCcchHHHHHHHHHC----CCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcC-ccCHHHcCC-CCEEEEecccc
Confidence 334555555544454444321 1223222 345667899999999997665 488999999 99999999763
No 128
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.07 E-value=0.75 Score=44.80 Aligned_cols=39 Identities=31% Similarity=0.412 Sum_probs=33.3
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCcccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAG 549 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~ 549 (617)
+.++.++.|||||.|+..+. ++..+|+++ |+.|.-+|..
T Consensus 195 ~l~~~~~~ADIvi~avG~p~-~v~~~~vk~-gavVIDvGin 233 (285)
T PRK10792 195 NLRHHVRNADLLVVAVGKPG-FIPGEWIKP-GAIVIDVGIN 233 (285)
T ss_pred CHHHHHhhCCEEEEcCCCcc-cccHHHcCC-CcEEEEcccc
Confidence 46678899999999997666 477899999 9999999965
No 129
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.61 E-value=0.72 Score=44.97 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=34.0
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+..++++.|||||.|+..+. ++..+|+++ |+.|.-+|.+.
T Consensus 197 ~l~~~~~~ADIVI~AvG~p~-li~~~~vk~-GavVIDVGi~~ 236 (286)
T PRK14184 197 DLAEECREADFLFVAIGRPR-FVTADMVKP-GAVVVDVGINR 236 (286)
T ss_pred hHHHHHHhCCEEEEecCCCC-cCCHHHcCC-CCEEEEeeeec
Confidence 46678999999999996544 588999999 99999999874
No 130
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.46 E-value=0.78 Score=44.71 Aligned_cols=40 Identities=33% Similarity=0.327 Sum_probs=34.0
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~ 550 (617)
+.+++++.||||++|++...- +..+|++| |+.|.-+|...
T Consensus 194 ~l~~~~~~ADIVI~avg~~~~-v~~~~ik~-GavVIDvgin~ 233 (284)
T PRK14179 194 NLAEVARKADILVVAIGRGHF-VTKEFVKE-GAVVIDVGMNR 233 (284)
T ss_pred CHHHHHhhCCEEEEecCcccc-CCHHHccC-CcEEEEeccee
Confidence 456778999999999976654 88999999 99999999874
No 131
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.91 E-value=0.85 Score=44.78 Aligned_cols=39 Identities=26% Similarity=0.419 Sum_probs=32.7
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCcccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAG 549 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~ 549 (617)
+..+.++.|||||.||.... +++.+|+++ |+.|.-||..
T Consensus 195 ~L~~~~~~aDIvI~AtG~~~-~v~~~~lk~-gavViDvg~n 233 (283)
T PRK14192 195 NLPELVKQADIIVGAVGKPE-LIKKDWIKQ-GAVVVDAGFH 233 (283)
T ss_pred hHHHHhccCCEEEEccCCCC-cCCHHHcCC-CCEEEEEEEe
Confidence 34556789999999998555 588999999 9999999976
No 132
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=78.51 E-value=1.1 Score=46.18 Aligned_cols=87 Identities=14% Similarity=0.205 Sum_probs=58.0
Q ss_pred CccccccccchhHHHHHhhhhcCCCCCcccccccccccccccceeeeccCCccchhhhhccc-----Ccccccccccccc
Q psy13389 477 SKCLNIVRIPVEIKSLVEKLTSEGVPAVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKK-----KDAHINAVGAGLN 551 (617)
Q Consensus 477 ~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~-----~g~~v~~~g~~~~ 551 (617)
-++++++.....|..... ..+.......+++..+|||+++|.|+.|++..+.+.. ++.+|.-++-.
T Consensus 206 ~IaNRT~erA~~La~~~~-------~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavP-- 276 (414)
T COG0373 206 TIANRTLERAEELAKKLG-------AEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVP-- 276 (414)
T ss_pred EEEcCCHHHHHHHHHHhC-------CeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCC--
Confidence 456777666666665544 2244557788899999999999999999999887755 12345555543
Q ss_pred ccccchhhh--hcCce-EEEecchhh
Q psy13389 552 HHSELDAAI--YSHSS-IFFDSEAAA 574 (617)
Q Consensus 552 ~~~e~~~~~--~~~~~-~~~d~~~~~ 574 (617)
+.+++++ +..+. +-+||..+.
T Consensus 277 --Rdie~~v~~l~~v~l~~iDDL~~i 300 (414)
T COG0373 277 --RDVEPEVGELPNVFLYTIDDLEEI 300 (414)
T ss_pred --CCCCccccCcCCeEEEehhhHHHH
Confidence 6688777 33443 336775554
No 133
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.94 E-value=1 Score=43.98 Aligned_cols=39 Identities=36% Similarity=0.325 Sum_probs=33.8
Q ss_pred ccccccccccceeeeccCCccchhhhhcccCcccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAG 549 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~ 549 (617)
+..+.++.|||||.|+.-+. ++..+|+++ |+.|.-+|..
T Consensus 200 ~l~~~~~~ADIvv~AvG~p~-~i~~~~vk~-gavVIDvGin 238 (287)
T PRK14176 200 DLKKYTLDADILVVATGVKH-LIKADMVKE-GAVIFDVGIT 238 (287)
T ss_pred CHHHHHhhCCEEEEccCCcc-ccCHHHcCC-CcEEEEeccc
Confidence 45668899999999997766 469999999 9999999986
No 134
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=77.69 E-value=1.1 Score=43.30 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=34.1
Q ss_pred cccccccccccceeeeccCCccchhhhhcccCcccccccccc
Q psy13389 508 EHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAG 549 (617)
Q Consensus 508 ~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~ 549 (617)
.+..+.++.||||++|+. ...++.++|++| |+.|.-||..
T Consensus 191 ~~l~~~~k~ADIvv~AvG-~p~~i~~d~vk~-gavVIDVGin 230 (283)
T COG0190 191 KDLASITKNADIVVVAVG-KPHFIKADMVKP-GAVVIDVGIN 230 (283)
T ss_pred CCHHHHhhhCCEEEEecC-CccccccccccC-CCEEEecCCc
Confidence 357788899999998884 456788999999 9999999986
No 135
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=75.44 E-value=1 Score=30.95 Aligned_cols=29 Identities=21% Similarity=0.509 Sum_probs=19.5
Q ss_pred cCCCCcccCccCCcCCCchhHHHHhhhhc
Q psy13389 371 HGVKPFKCSMCDEGFPKKSVLKEHLRVSH 399 (617)
Q Consensus 371 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~ 399 (617)
.|+.-+.|+-|+..|.....+.+|+...|
T Consensus 13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH 41 (65)
T COG4049 13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAH 41 (65)
T ss_pred CCceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence 34555677777777777777777766554
No 136
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=73.92 E-value=2.2 Score=34.84 Aligned_cols=8 Identities=38% Similarity=0.995 Sum_probs=3.2
Q ss_pred cCCCCCcC
Q psy13389 265 CTMCPKCF 272 (617)
Q Consensus 265 C~~C~~~f 272 (617)
|+.||+.|
T Consensus 12 Cp~CG~kF 19 (108)
T PF09538_consen 12 CPSCGAKF 19 (108)
T ss_pred CCCCcchh
Confidence 44444433
No 137
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=72.92 E-value=2.4 Score=34.63 Aligned_cols=14 Identities=29% Similarity=0.797 Sum_probs=6.8
Q ss_pred CCccCCccccccCC
Q psy13389 317 KPHACSICTESFSQ 330 (617)
Q Consensus 317 ~~~~C~~C~~~f~~ 330 (617)
.|-.||.||..|.-
T Consensus 25 ~PivCP~CG~~~~~ 38 (108)
T PF09538_consen 25 DPIVCPKCGTEFPP 38 (108)
T ss_pred CCccCCCCCCccCc
Confidence 34445555555443
No 138
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=72.30 E-value=1.9 Score=26.91 Aligned_cols=7 Identities=43% Similarity=1.236 Sum_probs=3.0
Q ss_pred ccCCCCC
Q psy13389 347 FKCDVCP 353 (617)
Q Consensus 347 ~~C~~C~ 353 (617)
|.|..||
T Consensus 3 ~~C~~CG 9 (34)
T cd00729 3 WVCPVCG 9 (34)
T ss_pred EECCCCC
Confidence 3444444
No 139
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=72.15 E-value=0.59 Score=43.80 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=10.1
Q ss_pred CCCccccccccCc
Q psy13389 429 IPCDKCPEIFEKK 441 (617)
Q Consensus 429 ~~C~~C~~~f~~~ 441 (617)
..|+.||.+|...
T Consensus 49 ~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 49 WVCPHCGYAAFEE 61 (214)
T ss_pred EECCCCCCccccc
Confidence 4699999888655
No 140
>PRK14982 acyl-ACP reductase; Provisional
Probab=71.67 E-value=2.5 Score=42.53 Aligned_cols=49 Identities=29% Similarity=0.237 Sum_probs=40.7
Q ss_pred ccccccccccceeeeccCCccc-hhhhhcccCccccccccccccccccchhhhhc
Q psy13389 509 HGEDAARDADILVTATYSSVPV-LKYEWLKKKDAHINAVGAGLNHHSELDAAIYS 562 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~-~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~ 562 (617)
+..+++..+|+|+++|.+..++ ++.+.+++ |..|.-++.. +.+++++-+
T Consensus 208 ~l~~~l~~aDiVv~~ts~~~~~~I~~~~l~~-~~~viDiAvP----RDVd~~v~~ 257 (340)
T PRK14982 208 SLEEALPEADIVVWVASMPKGVEIDPETLKK-PCLMIDGGYP----KNLDTKVQG 257 (340)
T ss_pred hHHHHHccCCEEEECCcCCcCCcCCHHHhCC-CeEEEEecCC----CCCCcccCC
Confidence 4567888999999999998885 99999988 9999988775 568887744
No 141
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.40 E-value=0.92 Score=42.54 Aligned_cols=43 Identities=30% Similarity=0.593 Sum_probs=28.0
Q ss_pred CCcccCccCCcCCCchhHHHHhhhh----------cCCCc-----cccccccccccCh
Q psy13389 374 KPFKCSMCDEGFPKKSVLKEHLRVS----------HNVNP-----FKCDICFKLFTKK 416 (617)
Q Consensus 374 ~~~~C~~C~~~f~~~~~l~~H~~~h----------~~~~~-----~~C~~C~~~f~~~ 416 (617)
+...|++|++.|.++..+....+.- .+..| ..||.||.+|...
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 4567888888888776555554431 12233 4699999998654
No 142
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=69.91 E-value=4.1 Score=36.09 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=19.2
Q ss_pred CCCccccccccccccChHhHHHHHHcCCCCCCcccccc
Q psy13389 400 NVNPFKCDICFKLFTKKSNLRTHIKTHEPIPCDKCPEI 437 (617)
Q Consensus 400 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~C~~C~~~ 437 (617)
+..-|.|+.|+..|+...++. ..|.|+.||..
T Consensus 106 ~~~~Y~Cp~c~~r~tf~eA~~------~~F~Cp~Cg~~ 137 (158)
T TIGR00373 106 NNMFFICPNMCVRFTFNEAME------LNFTCPRCGAM 137 (158)
T ss_pred CCCeEECCCCCcEeeHHHHHH------cCCcCCCCCCE
Confidence 334466666666666666554 25667777654
No 143
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=67.92 E-value=3.2 Score=36.72 Aligned_cols=12 Identities=33% Similarity=0.908 Sum_probs=6.2
Q ss_pred cCCCCcccCccC
Q psy13389 371 HGVKPFKCSMCD 382 (617)
Q Consensus 371 ~~~~~~~C~~C~ 382 (617)
-++.|-.||+||
T Consensus 145 ~ge~P~~CPiCg 156 (166)
T COG1592 145 EGEAPEVCPICG 156 (166)
T ss_pred cCCCCCcCCCCC
Confidence 344455555555
No 144
>KOG0717|consensus
Probab=65.94 E-value=2.9 Score=42.66 Aligned_cols=22 Identities=27% Similarity=0.709 Sum_probs=19.6
Q ss_pred ccCCCCccccCChHHHHHHHHh
Q psy13389 57 FKCNICPKRYARKNRLTNHLRT 78 (617)
Q Consensus 57 ~~C~~C~~~f~~~~~l~~H~~~ 78 (617)
+-|.+|+++|.+..+|..|..+
T Consensus 293 lyC~vCnKsFKseKq~kNHEnS 314 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENS 314 (508)
T ss_pred eEEeeccccccchHHHHhhHHH
Confidence 7899999999999999999754
No 145
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=65.81 E-value=6.9 Score=34.67 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=16.5
Q ss_pred CCCceecCCCCCcCCCHHHHHHHHHhcCCCCCcccCccccc
Q psy13389 259 GSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFES 299 (617)
Q Consensus 259 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~ 299 (617)
+..-|.|+.|+..|+...++. ..|.|+.||..
T Consensus 106 ~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~ 137 (158)
T TIGR00373 106 NNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAM 137 (158)
T ss_pred CCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCE
Confidence 334455666665555555543 13555555543
No 146
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=63.84 E-value=5.7 Score=34.91 Aligned_cols=62 Identities=16% Similarity=0.078 Sum_probs=39.2
Q ss_pred cccccccccccceeeeccCCcc-----chhhhhcccCccccccccccccccccchhhhhcCceEEEecc
Q psy13389 508 EHGEDAARDADILVTATYSSVP-----VLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHSSIFFDSE 571 (617)
Q Consensus 508 ~~~~~~~~~adiv~~~t~s~~p-----~~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~~~~~~d~~ 571 (617)
.+..+++.++|+|+.+|+.... .+....+++ |..|.-+++. |...+|...+......+++-.
T Consensus 73 ~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~-~~~v~D~~~~-~~~~~l~~~~~~~g~~~v~g~ 139 (155)
T cd01065 73 LDLEELLAEADLIINTTPVGMKPGDELPLPPSLLKP-GGVVYDVVYN-PLETPLLKEARALGAKTIDGL 139 (155)
T ss_pred cchhhccccCCEEEeCcCCCCCCCCCCCCCHHHcCC-CCEEEEcCcC-CCCCHHHHHHHHCCCceeCCH
Confidence 3556668899999999987642 233445677 8888888665 443355555444444555543
No 147
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=63.66 E-value=6.6 Score=24.87 Aligned_cols=9 Identities=33% Similarity=0.829 Sum_probs=3.8
Q ss_pred eecCccccc
Q psy13389 151 FLCSVCSKT 159 (617)
Q Consensus 151 ~~C~~C~~~ 159 (617)
.+|+.|+..
T Consensus 26 v~C~~C~~~ 34 (36)
T PF13717_consen 26 VRCSKCGHV 34 (36)
T ss_pred EECCCCCCE
Confidence 344444443
No 148
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=63.29 E-value=4.1 Score=27.17 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=9.5
Q ss_pred CccccccccccccC----hHhHHHHH
Q psy13389 402 NPFKCDICFKLFTK----KSNLRTHI 423 (617)
Q Consensus 402 ~~~~C~~C~~~f~~----~~~l~~H~ 423 (617)
....|.+|++.+.. .++|.+|+
T Consensus 15 ~~a~C~~C~~~~~~~~~~ts~l~~HL 40 (45)
T PF02892_consen 15 KKAKCKYCGKVIKYSSGGTSNLKRHL 40 (45)
T ss_dssp S-EEETTTTEE-----SSTHHHHHHH
T ss_pred CeEEeCCCCeEEeeCCCcHHHHHHhh
Confidence 33456666655543 24555555
No 149
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=63.23 E-value=6.2 Score=35.74 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=20.8
Q ss_pred CCccccccccccccChHhHHHHHHcCCCCCCccccccc
Q psy13389 401 VNPFKCDICFKLFTKKSNLRTHIKTHEPIPCDKCPEIF 438 (617)
Q Consensus 401 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~C~~C~~~f 438 (617)
..-|.|+.|+..|+...++. ..|.|+.||...
T Consensus 115 ~~~Y~Cp~C~~rytf~eA~~------~~F~Cp~Cg~~L 146 (178)
T PRK06266 115 NMFFFCPNCHIRFTFDEAME------YGFRCPQCGEML 146 (178)
T ss_pred CCEEECCCCCcEEeHHHHhh------cCCcCCCCCCCC
Confidence 34577777777777666653 367777777553
No 150
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=62.74 E-value=5.6 Score=25.37 Aligned_cols=9 Identities=33% Similarity=1.014 Sum_probs=3.6
Q ss_pred ccccccccC
Q psy13389 125 CEQCRFDFY 133 (617)
Q Consensus 125 C~~C~~~f~ 133 (617)
|+.|+..|.
T Consensus 5 CP~C~~~f~ 13 (37)
T PF13719_consen 5 CPNCQTRFR 13 (37)
T ss_pred CCCCCceEE
Confidence 344444333
No 151
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=62.30 E-value=2.1 Score=37.47 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=10.1
Q ss_pred CCCccccccccCchh
Q psy13389 429 IPCDKCPEIFEKKTD 443 (617)
Q Consensus 429 ~~C~~C~~~f~~~~~ 443 (617)
++|+.||++|.+.-.
T Consensus 29 ~~c~~c~~~f~~~e~ 43 (154)
T PRK00464 29 RECLACGKRFTTFER 43 (154)
T ss_pred eeccccCCcceEeEe
Confidence 677777777765543
No 152
>KOG1370|consensus
Probab=61.34 E-value=5.2 Score=38.70 Aligned_cols=53 Identities=26% Similarity=0.314 Sum_probs=39.7
Q ss_pred cccccccccccceeeeccCCccchh--hhhcccCccccccccccccccccchhhhhcCc
Q psy13389 508 EHGEDAARDADILVTATYSSVPVLK--YEWLKKKDAHINAVGAGLNHHSELDAAIYSHS 564 (617)
Q Consensus 508 ~~~~~~~~~adiv~~~t~s~~p~~~--~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~~ 564 (617)
...+++++.+||+||+|....-+.. .+-++. ++.|..||-..- |+|...+...
T Consensus 261 ~tm~ea~~e~difVTtTGc~dii~~~H~~~mk~-d~IvCN~Ghfd~---EiDv~~L~~~ 315 (434)
T KOG1370|consen 261 TTLEEAIREVDIFVTTTGCKDIITGEHFDQMKN-DAIVCNIGHFDT---EIDVKWLNTP 315 (434)
T ss_pred eeHHHhhhcCCEEEEccCCcchhhHHHHHhCcC-CcEEeccccccc---eeehhhccCC
Confidence 5789999999999999976654322 223466 999999998754 7887777654
No 153
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=61.27 E-value=6 Score=32.90 Aligned_cols=11 Identities=27% Similarity=0.238 Sum_probs=4.6
Q ss_pred CcccCcccccc
Q psy13389 290 PFHCSVCFESF 300 (617)
Q Consensus 290 ~~~C~~C~~~f 300 (617)
|..|+.||..|
T Consensus 26 p~vcP~cg~~~ 36 (129)
T TIGR02300 26 PAVSPYTGEQF 36 (129)
T ss_pred CccCCCcCCcc
Confidence 34444444443
No 154
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=61.14 E-value=1.6 Score=38.28 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=23.9
Q ss_pred cccCccCCcCCCc---hhHHHHhhhhcCCCccccccccccccChHhH
Q psy13389 376 FKCSMCDEGFPKK---SVLKEHLRVSHNVNPFKCDICFKLFTKKSNL 419 (617)
Q Consensus 376 ~~C~~C~~~f~~~---~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l 419 (617)
++||+||-.+..- ..+.. -..-.+.|+|+-||++|.+...+
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~---~~~~~~~~~c~~c~~~f~~~e~~ 44 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAED---GNAIRRRRECLACGKRFTTFERV 44 (154)
T ss_pred CcCCCCCCCCCEeEeccccCC---CCceeeeeeccccCCcceEeEec
Confidence 4799999766211 11111 00112348999999999876543
No 155
>KOG4167|consensus
Probab=61.00 E-value=3.3 Score=44.63 Aligned_cols=26 Identities=38% Similarity=0.770 Sum_probs=16.7
Q ss_pred cccccCCCCcccCChHHHHHHHHhhc
Q psy13389 93 GSFTCSQCPKTFVDKWHLNRHLKSHS 118 (617)
Q Consensus 93 ~~~~C~~C~~~f~~~~~l~~H~~~h~ 118 (617)
..|.|..|++.|.....+..||++|.
T Consensus 791 giFpCreC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 791 GIFPCRECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred ceeehHHHHHHHHHHhhhhHHHHHHH
Confidence 45666666666666666666666663
No 156
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=60.94 E-value=4.9 Score=35.58 Aligned_cols=9 Identities=33% Similarity=0.693 Sum_probs=4.2
Q ss_pred CcccCcccc
Q psy13389 290 PFHCSVCFE 298 (617)
Q Consensus 290 ~~~C~~C~~ 298 (617)
-|.|++||.
T Consensus 134 ~~vC~vCGy 142 (166)
T COG1592 134 VWVCPVCGY 142 (166)
T ss_pred EEEcCCCCC
Confidence 344555543
No 157
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=60.80 E-value=2 Score=29.03 Aligned_cols=11 Identities=27% Similarity=0.908 Sum_probs=5.6
Q ss_pred cccCccCCcCC
Q psy13389 376 FKCSMCDEGFP 386 (617)
Q Consensus 376 ~~C~~C~~~f~ 386 (617)
|.|+.||..|.
T Consensus 4 y~C~~CG~~~~ 14 (46)
T PRK00398 4 YKCARCGREVE 14 (46)
T ss_pred EECCCCCCEEE
Confidence 45555555443
No 158
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=60.61 E-value=5.1 Score=26.74 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=5.1
Q ss_pred ccCCccccccC
Q psy13389 319 HACSICTESFS 329 (617)
Q Consensus 319 ~~C~~C~~~f~ 329 (617)
|.|..||..|.
T Consensus 3 Y~C~~Cg~~~~ 13 (44)
T smart00659 3 YICGECGRENE 13 (44)
T ss_pred EECCCCCCEee
Confidence 44444444444
No 159
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=60.19 E-value=4.5 Score=24.83 Aligned_cols=8 Identities=50% Similarity=1.356 Sum_probs=3.8
Q ss_pred CCCCcccc
Q psy13389 428 PIPCDKCP 435 (617)
Q Consensus 428 ~~~C~~C~ 435 (617)
+.+|+.||
T Consensus 17 ~irC~~CG 24 (32)
T PF03604_consen 17 PIRCPECG 24 (32)
T ss_dssp TSSBSSSS
T ss_pred cEECCcCC
Confidence 44455554
No 160
>KOG2071|consensus
Probab=59.99 E-value=7.2 Score=41.46 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=14.8
Q ss_pred CCCCcccccCcccccccc
Q psy13389 468 APKEKSFNCSKCLNIVRI 485 (617)
Q Consensus 468 ~~~~k~f~C~~C~~~f~~ 485 (617)
.++++++.|++|+..|..
T Consensus 508 ~d~e~~~~C~IC~EkFe~ 525 (579)
T KOG2071|consen 508 ADSERQASCPICQEKFEV 525 (579)
T ss_pred cCcccccCCcccccccce
Confidence 344899999999998875
No 161
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=59.88 E-value=5.9 Score=25.29 Aligned_cols=6 Identities=33% Similarity=1.187 Sum_probs=2.2
Q ss_pred cCcccc
Q psy13389 153 CSVCSK 158 (617)
Q Consensus 153 C~~C~~ 158 (617)
|+.|+.
T Consensus 5 CP~C~~ 10 (38)
T TIGR02098 5 CPNCKT 10 (38)
T ss_pred CCCCCC
Confidence 333333
No 162
>KOG2186|consensus
Probab=59.69 E-value=4.1 Score=38.08 Aligned_cols=49 Identities=29% Similarity=0.621 Sum_probs=28.6
Q ss_pred ccCCCCCCCccCChhHHHHHhhhccCCCCcccCccCCcCCCchhHHHHhhhhc
Q psy13389 347 FKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSH 399 (617)
Q Consensus 347 ~~C~~C~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~ 399 (617)
|.|..||. . .....+..|+..-++ .-|.|-.|++.|.. ..++.|..--+
T Consensus 4 FtCnvCgE-s-vKKp~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~kCIT 52 (276)
T KOG2186|consen 4 FTCNVCGE-S-VKKPQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTKCIT 52 (276)
T ss_pred Eehhhhhh-h-ccccchHHHHHhccC-CeeEEeeccccccc-chhhhhhhhcc
Confidence 55666664 2 233445556655555 45677777777766 66666665433
No 163
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=59.26 E-value=5.2 Score=23.25 Aligned_cols=9 Identities=33% Similarity=0.464 Sum_probs=5.1
Q ss_pred ccccccccc
Q psy13389 405 KCDICFKLF 413 (617)
Q Consensus 405 ~C~~C~~~f 413 (617)
.|++||..|
T Consensus 16 ~Cp~CG~~F 24 (26)
T PF10571_consen 16 FCPHCGYDF 24 (26)
T ss_pred cCCCCCCCC
Confidence 455555555
No 164
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=58.87 E-value=2.1 Score=28.19 Aligned_cols=11 Identities=27% Similarity=1.066 Sum_probs=5.5
Q ss_pred cccCccCCcCC
Q psy13389 376 FKCSMCDEGFP 386 (617)
Q Consensus 376 ~~C~~C~~~f~ 386 (617)
|.|..||..|.
T Consensus 6 y~C~~Cg~~fe 16 (42)
T PF09723_consen 6 YRCEECGHEFE 16 (42)
T ss_pred EEeCCCCCEEE
Confidence 45555555543
No 165
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=58.82 E-value=7.1 Score=32.49 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=15.9
Q ss_pred ccCCccccccCChhhHHHHHhhhcCCCCccCCCCCC
Q psy13389 319 HACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPN 354 (617)
Q Consensus 319 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 354 (617)
..|+.||++|... +..|..|+.||.
T Consensus 10 r~Cp~cg~kFYDL-----------nk~p~vcP~cg~ 34 (129)
T TIGR02300 10 RICPNTGSKFYDL-----------NRRPAVSPYTGE 34 (129)
T ss_pred ccCCCcCcccccc-----------CCCCccCCCcCC
Confidence 4677777777642 235677777776
No 166
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=58.72 E-value=11 Score=32.97 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=8.1
Q ss_pred CceecCCCCCcCCCH
Q psy13389 261 KRYLCTMCPKCFTRK 275 (617)
Q Consensus 261 ~~~~C~~C~~~f~~~ 275 (617)
.-|.|+.|+..|...
T Consensus 98 ~~Y~Cp~C~~~y~~~ 112 (147)
T smart00531 98 AYYKCPNCQSKYTFL 112 (147)
T ss_pred cEEECcCCCCEeeHH
Confidence 345566665555543
No 167
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=58.46 E-value=9.6 Score=34.51 Aligned_cols=18 Identities=22% Similarity=0.556 Sum_probs=9.5
Q ss_pred CceecCCCCCcCCCHHHH
Q psy13389 261 KRYLCTMCPKCFTRKDDL 278 (617)
Q Consensus 261 ~~~~C~~C~~~f~~~~~L 278 (617)
.-|.|+.|+..|+...++
T Consensus 116 ~~Y~Cp~C~~rytf~eA~ 133 (178)
T PRK06266 116 MFFFCPNCHIRFTFDEAM 133 (178)
T ss_pred CEEECCCCCcEEeHHHHh
Confidence 345555555555554443
No 168
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=58.30 E-value=9.9 Score=33.25 Aligned_cols=38 Identities=16% Similarity=0.376 Sum_probs=21.7
Q ss_pred CCCCcccCccccccCCHHHHHHHHHHhCCCCCccCCcccccc
Q psy13389 287 GLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESF 328 (617)
Q Consensus 287 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 328 (617)
....|.|+.|+..|.....+..- . ....|.||.||...
T Consensus 96 ~~~~Y~Cp~C~~~y~~~ea~~~~---d-~~~~f~Cp~Cg~~l 133 (147)
T smart00531 96 NNAYYKCPNCQSKYTFLEANQLL---D-MDGTFTCPRCGEEL 133 (147)
T ss_pred CCcEEECcCCCCEeeHHHHHHhc---C-CCCcEECCCCCCEE
Confidence 44567788888777754433220 1 12337777777654
No 169
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=57.74 E-value=7.8 Score=22.49 Aligned_cols=21 Identities=19% Similarity=0.491 Sum_probs=14.7
Q ss_pred CCCccccccccCchhHHHHHhh
Q psy13389 429 IPCDKCPEIFEKKTDLQEHVDK 450 (617)
Q Consensus 429 ~~C~~C~~~f~~~~~l~~H~~~ 450 (617)
..|++|++.+ ....+..|+..
T Consensus 2 v~CPiC~~~v-~~~~in~HLD~ 22 (26)
T smart00734 2 VQCPVCFREV-PENLINSHLDS 22 (26)
T ss_pred CcCCCCcCcc-cHHHHHHHHHH
Confidence 3578888877 55677777653
No 170
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=57.36 E-value=4.5 Score=40.52 Aligned_cols=64 Identities=11% Similarity=0.057 Sum_probs=41.5
Q ss_pred cccccccccccceeeeccCCcc-chhhh----hcccCccccccccccccccccchhhhhc--Cce-EEEecchhhhc
Q psy13389 508 EHGEDAARDADILVTATYSSVP-VLKYE----WLKKKDAHINAVGAGLNHHSELDAAIYS--HSS-IFFDSEAAARG 576 (617)
Q Consensus 508 ~~~~~~~~~adiv~~~t~s~~p-~~~~~----~~~~~g~~v~~~g~~~~~~~e~~~~~~~--~~~-~~~d~~~~~~~ 576 (617)
.+..+++..+|||++||++..| .+... +.+. |..|.-++.. +.+++++.. ... +.+||+.+...
T Consensus 230 ~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~-~~~viDlavP----rdi~~~v~~l~~v~l~~vDdl~~~~~ 301 (311)
T cd05213 230 DELLELLNEADVVISATGAPHYAKIVERAMKKRSGK-PRLIVDLAVP----RDIEPEVGELEGVRLYTIDDLEEVVE 301 (311)
T ss_pred HHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCC-CeEEEEeCCC----CCCchhhccCCCcEEEEHHHhHHHHH
Confidence 4566778889999999999988 22222 2222 6667666643 447887755 443 66788777654
No 171
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=57.07 E-value=4.5 Score=37.87 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=14.8
Q ss_pred CCCCccccccccCchhHHHHHhh
Q psy13389 428 PIPCDKCPEIFEKKTDLQEHVDK 450 (617)
Q Consensus 428 ~~~C~~C~~~f~~~~~l~~H~~~ 450 (617)
+++|+.||..-.....|..-.++
T Consensus 209 ~~PCPKCg~et~eTkdLSmStR~ 231 (314)
T PF06524_consen 209 PIPCPKCGYETQETKDLSMSTRS 231 (314)
T ss_pred CCCCCCCCCcccccccceeeeec
Confidence 66777777666666666555555
No 172
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=56.88 E-value=2.8 Score=27.28 Aligned_cols=11 Identities=27% Similarity=1.026 Sum_probs=5.7
Q ss_pred cccCccCCcCC
Q psy13389 376 FKCSMCDEGFP 386 (617)
Q Consensus 376 ~~C~~C~~~f~ 386 (617)
|+|..||..|.
T Consensus 6 y~C~~Cg~~fe 16 (41)
T smart00834 6 YRCEDCGHTFE 16 (41)
T ss_pred EEcCCCCCEEE
Confidence 45555555543
No 173
>PF12907 zf-met2: Zinc-binding
Probab=56.79 E-value=4.5 Score=26.26 Aligned_cols=25 Identities=32% Similarity=0.703 Sum_probs=19.9
Q ss_pred CCCccccccccC---chhHHHHHhhhCC
Q psy13389 429 IPCDKCPEIFEK---KTDLQEHVDKCHN 453 (617)
Q Consensus 429 ~~C~~C~~~f~~---~~~l~~H~~~~H~ 453 (617)
++|.+|..+|.. ...|+.|....|.
T Consensus 2 i~C~iC~qtF~~t~~~~~L~eH~enKHp 29 (40)
T PF12907_consen 2 IICKICRQTFMQTTNEPQLKEHAENKHP 29 (40)
T ss_pred cCcHHhhHHHHhcCCHHHHHHHHHccCC
Confidence 679999977744 4569999998897
No 174
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=56.68 E-value=7.5 Score=43.34 Aligned_cols=40 Identities=20% Similarity=0.565 Sum_probs=25.9
Q ss_pred cccCccCCcCCCchhHHHHhhhhcCCCccccccccccccChHhHHHHHHcCCCCCCcccccc
Q psy13389 376 FKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTHEPIPCDKCPEI 437 (617)
Q Consensus 376 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~C~~C~~~ 437 (617)
+.|+.|+..+. .|...+...|.+||+. ...|..|+.||-.
T Consensus 445 ~~Cp~Cd~~lt----------~H~~~~~L~CH~Cg~~------------~~~p~~Cp~Cgs~ 484 (730)
T COG1198 445 AECPNCDSPLT----------LHKATGQLRCHYCGYQ------------EPIPQSCPECGSE 484 (730)
T ss_pred ccCCCCCcceE----------EecCCCeeEeCCCCCC------------CCCCCCCCCCCCC
Confidence 56888877632 3334456788888864 2346788888854
No 175
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=56.09 E-value=8 Score=27.29 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=7.2
Q ss_pred CcccCccCCcCC
Q psy13389 375 PFKCSMCDEGFP 386 (617)
Q Consensus 375 ~~~C~~C~~~f~ 386 (617)
.|.|+.||..-.
T Consensus 27 ~F~CPnCGe~~I 38 (61)
T COG2888 27 KFPCPNCGEVEI 38 (61)
T ss_pred EeeCCCCCceee
Confidence 467777775443
No 176
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=55.82 E-value=3.4 Score=36.87 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=41.8
Q ss_pred cccccccccccccccceeeeccCCc---cchh----hhhcccCccccccccccccc-cccchhhhhcCceEEEec
Q psy13389 504 VQAYEHGEDAARDADILVTATYSSV---PVLK----YEWLKKKDAHINAVGAGLNH-HSELDAAIYSHSSIFFDS 570 (617)
Q Consensus 504 ~~~~~~~~~~~~~adiv~~~t~s~~---p~~~----~~~~~~~g~~v~~~g~~~~~-~~e~~~~~~~~~~~~~d~ 570 (617)
+..+.++.+++..+|+|+++.++.. .++. ..++++ |..|..+++..|. .+++...+-.+.-.|+|-
T Consensus 45 ~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~-g~iiid~sT~~p~~~~~~~~~~~~~g~~~vda 118 (163)
T PF03446_consen 45 AEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENILAGLRP-GKIIIDMSTISPETSRELAERLAAKGVRYVDA 118 (163)
T ss_dssp EEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-T-TEEEEE-SS--HHHHHHHHHHHHHTTEEEEEE
T ss_pred hhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHhhcccc-ceEEEecCCcchhhhhhhhhhhhhccceeeee
Confidence 5677899999999999999998753 3332 355677 8888888887774 333443333344567775
No 177
>KOG0089|consensus
Probab=55.50 E-value=6.1 Score=37.59 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=40.7
Q ss_pred ccccccccceeeeccCCccchhhhhcccCccccccccccccccccchhhhhcCceEEEe-cchhhhcc
Q psy13389 511 EDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHSSIFFD-SEAAARGE 577 (617)
Q Consensus 511 ~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~~~~~~d-~~~~~~~e 577 (617)
+..++.||||+.|. ...-++..+|++| |+-+..+|-.. +.|++.-..-++|-| +.+++..-
T Consensus 214 k~ht~~adivi~a~-g~p~li~~d~Ik~-Ga~vidvgin~----v~dp~~a~~~klvgdvdFe~~~~k 275 (309)
T KOG0089|consen 214 KHHTRDADIVISAV-GIPNLITSDMIKP-GAAVIDVGINR----VHDPSTAVGIKLVGDVDFEEASKK 275 (309)
T ss_pred HHHHHhcceeehhc-CCCcccccceeec-CceeEecCCCc----ccccccceeeEEeeeccHHHhhhh
Confidence 45567799998555 2234788999999 99999999873 456654333356655 34444433
No 178
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=54.83 E-value=9 Score=42.73 Aligned_cols=10 Identities=30% Similarity=0.561 Sum_probs=4.8
Q ss_pred Cccccccccc
Q psy13389 402 NPFKCDICFK 411 (617)
Q Consensus 402 ~~~~C~~C~~ 411 (617)
.|..|+.||-
T Consensus 474 ~p~~Cp~Cgs 483 (730)
T COG1198 474 IPQSCPECGS 483 (730)
T ss_pred CCCCCCCCCC
Confidence 3445555543
No 179
>KOG2186|consensus
Probab=54.74 E-value=8 Score=36.22 Aligned_cols=46 Identities=30% Similarity=0.657 Sum_probs=37.8
Q ss_pred cccCccCCcCCCchhHHHHhhhhcCCCccccccccccccChHhHHHHHH
Q psy13389 376 FKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIK 424 (617)
Q Consensus 376 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~ 424 (617)
|.|..||..... ..+.+|+..-++ .-|.|--|++.|.. ..+..|.+
T Consensus 4 FtCnvCgEsvKK-p~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 4 FTCNVCGESVKK-PQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred Eehhhhhhhccc-cchHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence 789999998764 557779988887 56999999999988 77888875
No 180
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=54.17 E-value=5.3 Score=37.38 Aligned_cols=89 Identities=20% Similarity=0.480 Sum_probs=50.4
Q ss_pred CCCCCccCCccccccCChhhHHHHHhhh--cCCCCccCCCCCCCccCChhHHHHHhhhccCCCCcccCccCCcCCCchhH
Q psy13389 314 TNSKPHACSICTESFSQKSNLYIHLKLQ--HGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVL 391 (617)
Q Consensus 314 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~C~~C~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l 391 (617)
++.+.|+|.+|....-.-..+ .|+..- .....|+|..|++ + ..|.|-.|.-.|-.
T Consensus 138 hGGrif~CsfC~~flCEDDQF-EHQAsCQvLe~E~~KC~SCNr--l----------------Gq~sCLRCK~cfCd---- 194 (314)
T PF06524_consen 138 HGGRIFKCSFCDNFLCEDDQF-EHQASCQVLESETFKCQSCNR--L----------------GQYSCLRCKICFCD---- 194 (314)
T ss_pred CCCeEEEeecCCCeeeccchh-hhhhhhhhhhccccccccccc--c----------------cchhhhheeeeehh----
Confidence 566777777776544333322 233221 1233577777764 1 13455555555533
Q ss_pred HHHhhhh----cCCCccccccccccccChHhHHHHHHcC
Q psy13389 392 KEHLRVS----HNVNPFKCDICFKLFTKKSNLRTHIKTH 426 (617)
Q Consensus 392 ~~H~~~h----~~~~~~~C~~C~~~f~~~~~l~~H~~~h 426 (617)
.|++.. -..+++.||.||........|..-.|+|
T Consensus 195 -dHvrrKg~ky~k~k~~PCPKCg~et~eTkdLSmStR~h 232 (314)
T PF06524_consen 195 -DHVRRKGFKYEKGKPIPCPKCGYETQETKDLSMSTRSH 232 (314)
T ss_pred -hhhhhcccccccCCCCCCCCCCCcccccccceeeeecc
Confidence 444432 2347899999999887777776655555
No 181
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=53.55 E-value=9 Score=36.85 Aligned_cols=49 Identities=24% Similarity=0.527 Sum_probs=26.7
Q ss_pred ccCccCCcCCCchhHHHHhhhhcCCCccccccccccccChHhHHHHHHcCC
Q psy13389 377 KCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTHE 427 (617)
Q Consensus 377 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~ 427 (617)
-|-.|.-.|+....-..- .-.....|+|+.|...|-.--+.-.|...|.
T Consensus 364 ~Cf~CQ~~fp~~~~~~~~--~~~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh~ 412 (421)
T COG5151 364 HCFVCQGPFPKPPVSPFD--ESTSSGRYQCELCKSTFCSDCDVFIHETLHF 412 (421)
T ss_pred cceeccCCCCCCCCCccc--ccccccceechhhhhhhhhhhHHHHHHHHhh
Confidence 366666666643310000 0011234777777777777767777766664
No 182
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=52.34 E-value=6.7 Score=26.70 Aligned_cols=10 Identities=30% Similarity=1.016 Sum_probs=4.8
Q ss_pred cccCccCCcC
Q psy13389 376 FKCSMCDEGF 385 (617)
Q Consensus 376 ~~C~~C~~~f 385 (617)
|.|..||+.|
T Consensus 7 Y~C~~Cg~~~ 16 (49)
T COG1996 7 YKCARCGREV 16 (49)
T ss_pred EEhhhcCCee
Confidence 4444444444
No 183
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=51.49 E-value=25 Score=33.72 Aligned_cols=52 Identities=12% Similarity=0.058 Sum_probs=37.9
Q ss_pred cccccccccccceeeeccCCccchhhhhcccCccccccccccccccccchhhhhcCc
Q psy13389 508 EHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHS 564 (617)
Q Consensus 508 ~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~~ 564 (617)
....+....+++|..||.++.|+|.+.+||| |..|.--|.. ..+++.+-...
T Consensus 223 s~d~~~~~e~i~v~vAs~~~g~~I~pq~lkp-g~~ivD~g~P----~dvd~~vk~~~ 274 (351)
T COG5322 223 SLDYALPQEDILVWVASMPKGVEIFPQHLKP-GCLIVDGGYP----KDVDTSVKNVG 274 (351)
T ss_pred eccccccccceEEEEeecCCCceechhhccC-CeEEEcCCcC----cccccccccCC
Confidence 3444555566677788888999999999999 9988776654 44676665544
No 184
>PRK04023 DNA polymerase II large subunit; Validated
Probab=51.47 E-value=15 Score=41.81 Aligned_cols=88 Identities=13% Similarity=0.051 Sum_probs=43.2
Q ss_pred cccceeeeccCCccchhhhhcccCccccccccccccccccchhhhhc--Cce-EEEecchhhhcchhhhhhcc-------
Q psy13389 516 DADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYS--HSS-IFFDSEAAARGELKGLYEQV------- 585 (617)
Q Consensus 516 ~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~--~~~-~~~d~~~~~~~e~~~~~~~~------- 585 (617)
..|+-+|--...+-=+..+-|+.-|+.-.--|.... -++.++. -.+ |+.++-+..+-....+|..+
T Consensus 742 ~tD~PlTHfrp~EigvsveklreLGY~~Di~G~pL~----~~dQivELk~QDiil~~~aa~yll~va~fiDdLL~k~Ygl 817 (1121)
T PRK04023 742 MTDLPLTHFRPREIGVSVEKLRELGYTHDIYGNPLE----SEDQIVELKVQDVIISRDAAEYLLRVAKFIDDLLEKYYGL 817 (1121)
T ss_pred CcCCCcccccHHHcCCCHHHHHHcCCccccCCCCCC----CccceEEeecccEEcchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345555444333322344455556777666666543 2333322 223 44444444443334333331
Q ss_pred -----ccccccccccccccccccCCCC
Q psy13389 586 -----PANMVGEVGGLIAANLTRDARY 607 (617)
Q Consensus 586 -----~~~~~~~l~~~~~~~~~~~~~~ 607 (617)
.++.-.-||.||.|-+|-++..
T Consensus 818 ~~fYn~~~~eDLiGhLViGlAPHTSag 844 (1121)
T PRK04023 818 EPFYNVEKREDLIGHLVIGLAPHTSAG 844 (1121)
T ss_pred CccCCCCChhhcccceeeccCCccccc
Confidence 1122235788998988855554
No 185
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=50.91 E-value=10 Score=29.20 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=8.6
Q ss_pred CCcccCccCCcCCC
Q psy13389 374 KPFKCSMCDEGFPK 387 (617)
Q Consensus 374 ~~~~C~~C~~~f~~ 387 (617)
..|.|..|+..|.-
T Consensus 52 GIW~C~kCg~~fAG 65 (89)
T COG1997 52 GIWKCRKCGAKFAG 65 (89)
T ss_pred CeEEcCCCCCeecc
Confidence 34667777666653
No 186
>KOG2636|consensus
Probab=50.76 E-value=11 Score=38.33 Aligned_cols=24 Identities=17% Similarity=0.573 Sum_probs=14.4
Q ss_pred CcccccCCCC-cccCChHHHHHHHH
Q psy13389 92 EGSFTCSQCP-KTFVDKWHLNRHLK 115 (617)
Q Consensus 92 ~~~~~C~~C~-~~f~~~~~l~~H~~ 115 (617)
...|.|.+|| +++.-+..+.+|-.
T Consensus 399 ~~ey~CEICGNy~Y~GrkaF~RHF~ 423 (497)
T KOG2636|consen 399 DIEYNCEICGNYVYKGRKAFDRHFN 423 (497)
T ss_pred CcccceeeccCccccCcHHHHHHhH
Confidence 3456666666 56666666666643
No 187
>PHA00626 hypothetical protein
Probab=50.17 E-value=6.2 Score=27.39 Aligned_cols=12 Identities=17% Similarity=0.459 Sum_probs=6.2
Q ss_pred CcccCccCCcCC
Q psy13389 375 PFKCSMCDEGFP 386 (617)
Q Consensus 375 ~~~C~~C~~~f~ 386 (617)
.|.|+.||..|+
T Consensus 23 rYkCkdCGY~ft 34 (59)
T PHA00626 23 DYVCCDCGYNDS 34 (59)
T ss_pred ceEcCCCCCeec
Confidence 355555555554
No 188
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=49.22 E-value=11 Score=26.69 Aligned_cols=10 Identities=40% Similarity=0.863 Sum_probs=5.4
Q ss_pred CcccCccCCc
Q psy13389 375 PFKCSMCDEG 384 (617)
Q Consensus 375 ~~~C~~C~~~ 384 (617)
.|.|+.||+.
T Consensus 25 ~F~CPnCG~~ 34 (59)
T PRK14890 25 KFLCPNCGEV 34 (59)
T ss_pred EeeCCCCCCe
Confidence 3555555554
No 189
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=49.11 E-value=12 Score=25.75 Aligned_cols=22 Identities=23% Similarity=0.711 Sum_probs=11.2
Q ss_pred CccccccccCc-----hhHHHHHhhhC
Q psy13389 431 CDKCPEIFEKK-----TDLQEHVDKCH 452 (617)
Q Consensus 431 C~~C~~~f~~~-----~~l~~H~~~~H 452 (617)
|.+|++.+... +.|.+|++..|
T Consensus 21 C~~C~~~l~~~~~~gTs~L~rHl~~~h 47 (50)
T smart00614 21 CKYCGKKLSRSSKGGTSNLRRHLRRKH 47 (50)
T ss_pred ecCCCCEeeeCCCCCcHHHHHHHHhHC
Confidence 55555444333 45666666434
No 190
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=48.49 E-value=17 Score=28.81 Aligned_cols=85 Identities=15% Similarity=0.092 Sum_probs=46.1
Q ss_pred ccccCccccccccchhH-HHHHhhhhcCCCCCcccccccccccccccceeeeccCCccchhhhhcccCcccccccccccc
Q psy13389 473 SFNCSKCLNIVRIPVEI-KSLVEKLTSEGVPAVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLN 551 (617)
Q Consensus 473 ~f~C~~C~~~f~~~~~l-~~H~~~~~~~~~~~~~~~~~~~~~~~~adiv~~~t~s~~p~~~~~~~~~~g~~v~~~g~~~~ 551 (617)
|.+|.-||..|.+-+.. .+-.-.-....+. -+....+.|+..+ ..|.+..+.+.. |.-|.+|---.|
T Consensus 2 pH~CtrCG~vf~~g~~~il~GCp~CG~nkF~--yv~~e~rpa~~e~---------~d~~vrde~~a~-ge~ietIrI~~p 69 (112)
T COG3364 2 PHQCTRCGEVFDDGSEEILSGCPKCGCNKFL--YVPEEKRPAVAEA---------ADPEVRDEDGAQ-GEPIETIRILRP 69 (112)
T ss_pred CceecccccccccccHHHHccCccccchheE--ecccccccchhhh---------cCCcccchhhcc-cCcceEEEEecC
Confidence 56899999999984332 2222122212211 1222233333333 345555666666 777777777777
Q ss_pred ccccchhhhhc-CceEEEe
Q psy13389 552 HHSELDAAIYS-HSSIFFD 569 (617)
Q Consensus 552 ~~~e~~~~~~~-~~~~~~d 569 (617)
+..||.-+-|. +..|||-
T Consensus 70 G~YeiNl~~Lld~~~iVva 88 (112)
T COG3364 70 GVYEINLESLLDRDEIVVA 88 (112)
T ss_pred ceEEEehhhhccCCceEEE
Confidence 77788865444 4455543
No 191
>KOG2593|consensus
Probab=48.10 E-value=11 Score=38.52 Aligned_cols=8 Identities=50% Similarity=0.924 Sum_probs=5.2
Q ss_pred hhhhhccc
Q psy13389 531 LKYEWLKK 538 (617)
Q Consensus 531 ~~~~~~~~ 538 (617)
+.+.|++.
T Consensus 282 ~~P~W~~~ 289 (436)
T KOG2593|consen 282 ILPEWLAK 289 (436)
T ss_pred cCChHHHh
Confidence 44678777
No 192
>KOG2807|consensus
Probab=47.83 E-value=25 Score=34.41 Aligned_cols=31 Identities=26% Similarity=0.618 Sum_probs=19.7
Q ss_pred CCcccCccccccCCHHHHHHHHHHhCCCCCccCCccc
Q psy13389 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICT 325 (617)
Q Consensus 289 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~ 325 (617)
..|+|..|...|=.--+.-.|...| .|+.|.
T Consensus 344 ~~y~C~~Ck~~FCldCDv~iHesLh------~CpgCe 374 (378)
T KOG2807|consen 344 GRYRCESCKNVFCLDCDVFIHESLH------NCPGCE 374 (378)
T ss_pred CcEEchhccceeeccchHHHHhhhh------cCCCcC
Confidence 3477777777776666666665544 466665
No 193
>PF15269 zf-C2H2_7: Zinc-finger
Probab=47.73 E-value=13 Score=24.37 Aligned_cols=23 Identities=39% Similarity=0.769 Sum_probs=20.3
Q ss_pred cccCCCCccccCChHHHHHHHHh
Q psy13389 56 KFKCNICPKRYARKNRLTNHLRT 78 (617)
Q Consensus 56 ~~~C~~C~~~f~~~~~l~~H~~~ 78 (617)
.|+|-.|..+...++.|..||+.
T Consensus 20 ~ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 20 KYKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred cceeecCCcccchHHHHHHHHHH
Confidence 47899999999999999999875
No 194
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=47.41 E-value=46 Score=39.19 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=11.8
Q ss_pred ccccccccccccCCCC
Q psy13389 592 EVGGLIAANLTRDARY 607 (617)
Q Consensus 592 ~l~~~~~~~~~~~~~~ 607 (617)
-||.||.|-+|-++..
T Consensus 876 LiGhLviGlAPHTSag 891 (1337)
T PRK14714 876 LVGHLVIGLAPHTSAG 891 (1337)
T ss_pred ccceeeeccCCccccc
Confidence 5788998888855554
No 195
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=46.89 E-value=6.6 Score=34.81 Aligned_cols=59 Identities=29% Similarity=0.250 Sum_probs=33.0
Q ss_pred CcccccccccccccccceeeeccCCc--cchh--hhhcccCcc-ccccccccccccccchhhhhc
Q psy13389 503 AVQAYEHGEDAARDADILVTATYSSV--PVLK--YEWLKKKDA-HINAVGAGLNHHSELDAAIYS 562 (617)
Q Consensus 503 ~~~~~~~~~~~~~~adiv~~~t~s~~--p~~~--~~~~~~~g~-~v~~~g~~~~~~~e~~~~~~~ 562 (617)
.+.+..+.++++++||+|+.++||.. .++. ..++++ +. .|++.+...++...+..+++.
T Consensus 56 ~i~~t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~-~~~ii~~~KG~~~~~~~~~~~~i~ 119 (157)
T PF01210_consen 56 NIKATTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKK-GQIIISATKGFEPGTLLLLSEVIE 119 (157)
T ss_dssp TEEEESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHT-T-EEEETS-SEETTEEEEHHHHHH
T ss_pred ccccccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCC-CCEEEEecCCcccCCCccHHHHHH
Confidence 34566788899999999999999874 4444 233455 54 444444444444455555443
No 196
>PF15269 zf-C2H2_7: Zinc-finger
Probab=46.06 E-value=14 Score=24.25 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=13.6
Q ss_pred cccccccccccChHhHHHHHH
Q psy13389 404 FKCDICFKLFTKKSNLRTHIK 424 (617)
Q Consensus 404 ~~C~~C~~~f~~~~~l~~H~~ 424 (617)
|+|-.|......++.|-+||+
T Consensus 21 ykcfqcpftc~~kshl~nhmk 41 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMK 41 (54)
T ss_pred ceeecCCcccchHHHHHHHHH
Confidence 566666666666666666664
No 197
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=45.85 E-value=8.2 Score=35.18 Aligned_cols=20 Identities=15% Similarity=0.682 Sum_probs=0.0
Q ss_pred ccccCCCCc-ccCChHHHHHH
Q psy13389 94 SFTCSQCPK-TFVDKWHLNRH 113 (617)
Q Consensus 94 ~~~C~~C~~-~f~~~~~l~~H 113 (617)
.|.|.+||- +|.-+..+.+|
T Consensus 101 ey~CEICGN~~Y~GrkaFekH 121 (196)
T PF11931_consen 101 EYKCEICGNQSYKGRKAFEKH 121 (196)
T ss_dssp ---------------------
T ss_pred eeeeEeCCCcceecHHHHHHh
Confidence 344555542 33344444444
No 198
>KOG2807|consensus
Probab=45.38 E-value=29 Score=33.96 Aligned_cols=68 Identities=22% Similarity=0.485 Sum_probs=39.1
Q ss_pred CcccCccCCcCCCchhHHHHhhhhcCCCcc------------ccccccccccChHhHHHHHHcCCCCCCccccccccCch
Q psy13389 375 PFKCSMCDEGFPKKSVLKEHLRVSHNVNPF------------KCDICFKLFTKKSNLRTHIKTHEPIPCDKCPEIFEKKT 442 (617)
Q Consensus 375 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~------------~C~~C~~~f~~~~~l~~H~~~h~~~~C~~C~~~f~~~~ 442 (617)
|-.|++|+-+..+...|.+=.+---..++| .|-.|+-. .+.-..|.|..|...|-.--
T Consensus 290 P~eCpiC~ltLVss~hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~----------~~~~~~y~C~~Ck~~FCldC 359 (378)
T KOG2807|consen 290 PIECPICSLTLVSSPHLARSYHHLFPLKPFVEIPETEYNGSRFCFACQGE----------LLSSGRYRCESCKNVFCLDC 359 (378)
T ss_pred CccCCccceeEecchHHHHHHHhhcCCcchhhccccccCCCcceeeeccc----------cCCCCcEEchhccceeeccc
Confidence 566777777777766665533211111111 15555111 11223588888888888888
Q ss_pred hHHHHHhhhCC
Q psy13389 443 DLQEHVDKCHN 453 (617)
Q Consensus 443 ~l~~H~~~~H~ 453 (617)
+.-.|-.. |.
T Consensus 360 Dv~iHesL-h~ 369 (378)
T KOG2807|consen 360 DVFIHESL-HN 369 (378)
T ss_pred hHHHHhhh-hc
Confidence 88888766 54
No 199
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=44.93 E-value=5.7 Score=29.69 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=27.6
Q ss_pred CCCccccccccCchhHHHHHhhhCCCCccccccccCCCCCCCCcccccC--ccccccccchhH
Q psy13389 429 IPCDKCPEIFEKKTDLQEHVDKCHNLHEEDEEEGLDEFDAPKEKSFNCS--KCLNIVRIPVEI 489 (617)
Q Consensus 429 ~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~~~~~k~f~C~--~C~~~f~~~~~l 489 (617)
+.|+.||.......+-..+-. ..+..+.|. .||.+|.....+
T Consensus 2 m~CP~Cg~~a~irtSr~~s~~-------------------~~~~Y~qC~N~eCg~tF~t~es~ 45 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYITDT-------------------TKERYHQCQNVNCSATFITYESV 45 (72)
T ss_pred ccCCCCCCccEEEEChhcChh-------------------hheeeeecCCCCCCCEEEEEEEE
Confidence 578888877644433333222 256778998 899999876543
No 200
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=44.85 E-value=11 Score=26.05 Aligned_cols=11 Identities=27% Similarity=0.869 Sum_probs=4.7
Q ss_pred cccCCCccccc
Q psy13389 207 FQCNVCYICFT 217 (617)
Q Consensus 207 ~~C~~C~~~f~ 217 (617)
|.|..|+..|.
T Consensus 6 y~C~~Cg~~fe 16 (52)
T TIGR02605 6 YRCTACGHRFE 16 (52)
T ss_pred EEeCCCCCEeE
Confidence 34444444443
No 201
>PLN02494 adenosylhomocysteinase
Probab=44.45 E-value=9.6 Score=40.07 Aligned_cols=50 Identities=28% Similarity=0.310 Sum_probs=34.2
Q ss_pred ccccccccccceeeeccCCccch---hhhhcccCccccccccccccccccchhhhhcC
Q psy13389 509 HGEDAARDADILVTATYSSVPVL---KYEWLKKKDAHINAVGAGLNHHSELDAAIYSH 563 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~---~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~ 563 (617)
+.++++..+|||+++|... .++ ...++++ |+.|..+|...+ |++.+-|..
T Consensus 302 ~leEal~~ADVVI~tTGt~-~vI~~e~L~~MK~-GAiLiNvGr~~~---eID~~aL~~ 354 (477)
T PLN02494 302 TLEDVVSEADIFVTTTGNK-DIIMVDHMRKMKN-NAIVCNIGHFDN---EIDMLGLET 354 (477)
T ss_pred cHHHHHhhCCEEEECCCCc-cchHHHHHhcCCC-CCEEEEcCCCCC---ccCHHHHhh
Confidence 3566788899999877544 333 2446788 999999998533 566655443
No 202
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=42.59 E-value=23 Score=32.23 Aligned_cols=58 Identities=24% Similarity=0.373 Sum_probs=39.6
Q ss_pred cccccceeeeccC---CccchhhhhcccCccccccccccccccccc-----hhhhhcCceEEEecc
Q psy13389 514 ARDADILVTATYS---SVPVLKYEWLKKKDAHINAVGAGLNHHSEL-----DAAIYSHSSIFFDSE 571 (617)
Q Consensus 514 ~~~adiv~~~t~s---~~p~~~~~~~~~~g~~v~~~g~~~~~~~e~-----~~~~~~~~~~~~d~~ 571 (617)
++.-||++...+| +.|+=.++|.|.+|+.|++|-|-....... -..+...|+||.|+.
T Consensus 102 i~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~vTSl~ySq~~~SRh~SGK~Ly~~aDvVlDN~ 167 (243)
T COG4821 102 IRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVTSLDYSQSQASRHKSGKLLYEFADVVLDNG 167 (243)
T ss_pred CCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEehhhhhhhchhcccchhHHhhhcceeeeCC
Confidence 4567887766655 468888999999999999997654332211 123445567888974
No 203
>PRK04023 DNA polymerase II large subunit; Validated
Probab=41.61 E-value=18 Score=41.14 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=22.5
Q ss_pred Cccchhhhhccc-CccccccccccccccccchhhhhcCc
Q psy13389 527 SVPVLKYEWLKK-KDAHINAVGAGLNHHSELDAAIYSHS 564 (617)
Q Consensus 527 ~~p~~~~~~~~~-~g~~v~~~g~~~~~~~e~~~~~~~~~ 564 (617)
.+|+=++. |+. .|.+|.-=|+-.-+|..+|-.-++-.
T Consensus 716 ~EPlEKGi-LRAk~~v~vFKDGTiR~D~tD~PlTHfrp~ 753 (1121)
T PRK04023 716 PEPLEKGI-LRAKHDVYVFKDGTVRYDMTDLPLTHFRPR 753 (1121)
T ss_pred CcchHhhh-hhhhcCeeEecCcceeccCcCCCcccccHH
Confidence 46654443 332 47777777888777777775444433
No 204
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=41.56 E-value=13 Score=26.57 Aligned_cols=38 Identities=29% Similarity=0.672 Sum_probs=15.7
Q ss_pred CcccCc--cCCcCCCchhHHHHhhhhcCCCcccccc----ccccc
Q psy13389 375 PFKCSM--CDEGFPKKSVLKEHLRVSHNVNPFKCDI----CFKLF 413 (617)
Q Consensus 375 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f 413 (617)
+..|+. |...+. +..|..|+...-..++-.|++ |+..+
T Consensus 9 ~v~C~~~cc~~~i~-r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~ 52 (60)
T PF02176_consen 9 PVPCPNGCCNEMIP-RKELDDHLENECPKRPVPCPYSPYGCKERV 52 (60)
T ss_dssp EEE-TT--S-BEEE-CCCHHHHHHTTSTTSEEE-SS----S--EE
T ss_pred EeeCCCCCccccee-HHHHHHHHHccCCCCcEECCCCCCCCCCcc
Confidence 344555 333332 345555555444444555555 55544
No 205
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=41.19 E-value=26 Score=24.14 Aligned_cols=11 Identities=27% Similarity=0.815 Sum_probs=9.3
Q ss_pred CCCcccccccc
Q psy13389 429 IPCDKCPEIFE 439 (617)
Q Consensus 429 ~~C~~C~~~f~ 439 (617)
|+|..||..|.
T Consensus 2 y~C~~CgyiYd 12 (50)
T cd00730 2 YECRICGYIYD 12 (50)
T ss_pred cCCCCCCeEEC
Confidence 78999998884
No 206
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=40.20 E-value=12 Score=39.56 Aligned_cols=39 Identities=33% Similarity=0.407 Sum_probs=31.9
Q ss_pred ccccccccccceeeeccCCccchhhhhc---ccCcccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWL---KKKDAHINAVGAG 549 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~---~~~g~~v~~~g~~ 549 (617)
+.+++++.||||+++|. +..+|..+++ +| |+.|..+|-.
T Consensus 302 ~leell~~ADIVI~atG-t~~iI~~e~~~~MKp-GAiLINvGr~ 343 (476)
T PTZ00075 302 TLEDVVETADIFVTATG-NKDIITLEHMRRMKN-NAIVGNIGHF 343 (476)
T ss_pred cHHHHHhcCCEEEECCC-cccccCHHHHhccCC-CcEEEEcCCC
Confidence 46778889999999984 5567876666 88 9999999987
No 207
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=40.06 E-value=10 Score=30.78 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=8.9
Q ss_pred ccccCccccccc
Q psy13389 473 SFNCSKCLNIVR 484 (617)
Q Consensus 473 ~f~C~~C~~~f~ 484 (617)
..+|+.||..-.
T Consensus 62 ~~~Cp~Cg~~~a 73 (104)
T TIGR01384 62 RVECPKCGHKEA 73 (104)
T ss_pred cCCCCCCCCCee
Confidence 479999987543
No 208
>PF14353 CpXC: CpXC protein
Probab=39.65 E-value=4.2 Score=34.63 Aligned_cols=52 Identities=21% Similarity=0.353 Sum_probs=28.0
Q ss_pred CCCccccccccCchhHHHHHhhhCCCCccccccccCCCCCCCCcccccCccccccccchh
Q psy13389 429 IPCDKCPEIFEKKTDLQEHVDKCHNLHEEDEEEGLDEFDAPKEKSFNCSKCLNIVRIPVE 488 (617)
Q Consensus 429 ~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~~~~~~~k~f~C~~C~~~f~~~~~ 488 (617)
..|+.|+..|....-.... ...+.+..+.+-...-..|.||.||..|.-...
T Consensus 2 itCP~C~~~~~~~v~~~I~--------~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p 53 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSIN--------ADEDPELKEKILDGSLFSFTCPSCGHKFRLEYP 53 (128)
T ss_pred cCCCCCCCeeEEEEEeEEc--------CcCCHHHHHHHHcCCcCEEECCCCCCceecCCC
Confidence 4688898888544322111 111111222222334457999999998875443
No 209
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=38.77 E-value=13 Score=34.49 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=21.0
Q ss_pred CCCCccccccccCchhHHHHHhhhCC
Q psy13389 428 PIPCDKCPEIFEKKTDLQEHVDKCHN 453 (617)
Q Consensus 428 ~~~C~~C~~~f~~~~~l~~H~~~~H~ 453 (617)
.|.|+.|+|.|.-..-.++|+...|.
T Consensus 77 K~~C~lc~KlFkg~eFV~KHI~nKH~ 102 (214)
T PF04959_consen 77 KWRCPLCGKLFKGPEFVRKHIFNKHP 102 (214)
T ss_dssp EEEE-SSS-EESSHHHHHHHHHHH-H
T ss_pred EECCCCCCcccCChHHHHHHHhhcCH
Confidence 48899999999999999999999996
No 210
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=38.04 E-value=7.4 Score=24.67 Aligned_cols=8 Identities=25% Similarity=1.115 Sum_probs=3.3
Q ss_pred cCCCCCcC
Q psy13389 265 CTMCPKCF 272 (617)
Q Consensus 265 C~~C~~~f 272 (617)
|+.||..|
T Consensus 4 C~~Cg~~Y 11 (36)
T PF05191_consen 4 CPKCGRIY 11 (36)
T ss_dssp ETTTTEEE
T ss_pred cCCCCCcc
Confidence 44444433
No 211
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=37.83 E-value=15 Score=28.66 Aligned_cols=14 Identities=14% Similarity=0.527 Sum_probs=8.5
Q ss_pred CCcccCccCCcCCC
Q psy13389 374 KPFKCSMCDEGFPK 387 (617)
Q Consensus 374 ~~~~C~~C~~~f~~ 387 (617)
..|.|..|++.|.-
T Consensus 53 GIW~C~~C~~~~AG 66 (90)
T PTZ00255 53 GIWRCKGCKKTVAG 66 (90)
T ss_pred EEEEcCCCCCEEeC
Confidence 35666666666653
No 212
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=37.80 E-value=14 Score=31.38 Aligned_cols=28 Identities=32% Similarity=0.624 Sum_probs=16.3
Q ss_pred CCCCccccccccCchhHHHHHhhhCCCCccc
Q psy13389 428 PIPCDKCPEIFEKKTDLQEHVDKCHNLHEED 458 (617)
Q Consensus 428 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~ 458 (617)
...|-.||+.|.. |++|++.+|++..++
T Consensus 72 ~i~clecGk~~k~---LkrHL~~~~gltp~e 99 (132)
T PF05443_consen 72 YIICLECGKKFKT---LKRHLRTHHGLTPEE 99 (132)
T ss_dssp -EE-TBT--EESB---HHHHHHHTT-S-HHH
T ss_pred eeEEccCCcccch---HHHHHHHccCCCHHH
Confidence 3578999998865 499999977765443
No 213
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.74 E-value=23 Score=38.24 Aligned_cols=11 Identities=18% Similarity=0.664 Sum_probs=5.5
Q ss_pred CCCccCCCCCC
Q psy13389 344 VNPFKCDVCPN 354 (617)
Q Consensus 344 ~~~~~C~~C~~ 354 (617)
.+...|.+||.
T Consensus 238 ~~~l~Ch~Cg~ 248 (505)
T TIGR00595 238 EGKLRCHYCGY 248 (505)
T ss_pred CCeEEcCCCcC
Confidence 33455555554
No 214
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=37.71 E-value=13 Score=35.74 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=33.0
Q ss_pred ccccccccccChHhHHHHHH-cCCCCCCccccccccCchhHHHHHhhhCC
Q psy13389 405 KCDICFKLFTKKSNLRTHIK-THEPIPCDKCPEIFEKKTDLQEHVDKCHN 453 (617)
Q Consensus 405 ~C~~C~~~f~~~~~l~~H~~-~h~~~~C~~C~~~f~~~~~l~~H~~~~H~ 453 (617)
-|-.|.-.|.....-..-.. +-..|+|+.|...|-.--+.-.|... |.
T Consensus 364 ~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdvfiHe~L-h~ 412 (421)
T COG5151 364 HCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDVFIHETL-HF 412 (421)
T ss_pred cceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHHHHHHHH-hh
Confidence 48888877765432111111 11269999999999999999999877 64
No 215
>PRK14873 primosome assembly protein PriA; Provisional
Probab=37.44 E-value=19 Score=40.20 Aligned_cols=39 Identities=15% Similarity=0.416 Sum_probs=25.1
Q ss_pred cccCccCCcCCCchhHHHHhhhhcCCCccccccccccccChHhHHHHHHcCCCCCCcccccc
Q psy13389 376 FKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTHEPIPCDKCPEI 437 (617)
Q Consensus 376 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~C~~C~~~ 437 (617)
..|+.|+-... .|.......|.+||+.- .+..|+.||..
T Consensus 393 ~~C~~C~~~L~----------~h~~~~~l~Ch~CG~~~-------------~p~~Cp~Cgs~ 431 (665)
T PRK14873 393 ARCRHCTGPLG----------LPSAGGTPRCRWCGRAA-------------PDWRCPRCGSD 431 (665)
T ss_pred eECCCCCCcee----------EecCCCeeECCCCcCCC-------------cCccCCCCcCC
Confidence 56888876543 23344567888888631 25688888764
No 216
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.93 E-value=21 Score=28.64 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=6.2
Q ss_pred CCcccCcccccc
Q psy13389 289 KPFHCSVCFESF 300 (617)
Q Consensus 289 ~~~~C~~C~~~f 300 (617)
.|..|+.||++|
T Consensus 25 dPiVsPytG~s~ 36 (129)
T COG4530 25 DPIVSPYTGKSY 36 (129)
T ss_pred CccccCcccccc
Confidence 445555555555
No 217
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=36.63 E-value=16 Score=20.81 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=8.7
Q ss_pred CcccccCcccc
Q psy13389 471 EKSFNCSKCLN 481 (617)
Q Consensus 471 ~k~f~C~~C~~ 481 (617)
..+|.|+.||+
T Consensus 14 ~v~f~CPnCG~ 24 (24)
T PF07754_consen 14 AVPFPCPNCGF 24 (24)
T ss_pred CceEeCCCCCC
Confidence 35799999985
No 218
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=36.63 E-value=11 Score=36.47 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=32.2
Q ss_pred ccccccccccccccceeeeccCC--ccchhhhhcccCcccccccccc
Q psy13389 505 QAYEHGEDAARDADILVTATYSS--VPVLKYEWLKKKDAHINAVGAG 549 (617)
Q Consensus 505 ~~~~~~~~~~~~adiv~~~t~s~--~p~~~~~~~~~~g~~v~~~g~~ 549 (617)
....+..+++..+|||+.+++.. .+++...++++ |.+|.++.+.
T Consensus 50 ~~~~~~~~~~~~aDvVilav~p~~~~~vl~~l~~~~-~~~vis~~ag 95 (258)
T PRK06476 50 RIAKDNQAVVDRSDVVFLAVRPQIAEEVLRALRFRP-GQTVISVIAA 95 (258)
T ss_pred eEeCCHHHHHHhCCEEEEEeCHHHHHHHHHHhccCC-CCEEEEECCC
Confidence 34567777788999999999863 47776656677 7777776654
No 219
>KOG2272|consensus
Probab=35.60 E-value=12 Score=34.83 Aligned_cols=118 Identities=19% Similarity=0.439 Sum_probs=52.9
Q ss_pred cccccCCCCcccCChHHHHHH---H------H-hhcCCCceeccccccccCCHHHHHHHHHhcCCCcceecCccccccCC
Q psy13389 93 GSFTCSQCPKTFVDKWHLNRH---L------K-SHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTD 162 (617)
Q Consensus 93 ~~~~C~~C~~~f~~~~~l~~H---~------~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 162 (617)
.-|.|++|++...+...++.- + + .-.+...|.|..|...... ..|.---..-+ .--|+|..|++...+
T Consensus 98 ~CF~Cd~Cn~~Lad~gf~rnqgr~LC~~Cn~k~Ka~~~g~YvC~KCh~~iD~-~~l~fr~d~yH-~yHFkCt~C~keL~s 175 (332)
T KOG2272|consen 98 ACFRCDLCNKHLADQGFYRNQGRALCRECNQKEKAKGRGRYVCQKCHAHIDE-QPLTFRGDPYH-PYHFKCTTCGKELTS 175 (332)
T ss_pred ccchhHHHHHHHhhhhhHhhcchHHhhhhhhhhcccccceeehhhhhhhccc-ccccccCCCCC-ccceecccccccccc
Confidence 356777776665544433321 1 1 1122335777777655443 11111000000 123678888877665
Q ss_pred hHHHHHH----HHHccCCCCcccCcCcc---ccCCh--HHHHHHHHhccCCCCcccCCCcccccCc
Q psy13389 163 KVKFNRH----MRAHEGIKPFQCSVCSE---SFTQR--SNLNIHLRIHDGIRPFQCNVCYICFTNK 219 (617)
Q Consensus 163 ~~~l~~H----~~~h~~~~~~~C~~C~~---~f~~~--~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 219 (617)
.+.-..- ++-|. .+.+++|+. ....+ ..|..|. -...|.|..|.+.|.-.
T Consensus 176 daRevk~eLyClrChD---~mgipiCgaC~rpIeervi~amgKhW----HveHFvCa~CekPFlGH 234 (332)
T KOG2272|consen 176 DAREVKGELYCLRCHD---KMGIPICGACRRPIEERVIFAMGKHW----HVEHFVCAKCEKPFLGH 234 (332)
T ss_pred hhhhhccceecccccc---ccCCcccccccCchHHHHHHHhcccc----chhheeehhcCCcccch
Confidence 4331111 01111 234555543 22211 2233333 22358888888888643
No 220
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.62 E-value=21 Score=38.50 Aligned_cols=40 Identities=20% Similarity=0.507 Sum_probs=22.2
Q ss_pred cccCccCCcCCCchhHHHHhhhhcCCCccccccccccccChHhHHHHHHcCCCCCCcccccc
Q psy13389 376 FKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTHEPIPCDKCPEI 437 (617)
Q Consensus 376 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~C~~C~~~ 437 (617)
..|+.|+-.. ..|.......|.+||.... -|..|+.|+..
T Consensus 223 ~~C~~C~~~l----------~~h~~~~~l~Ch~Cg~~~~------------~~~~Cp~C~s~ 262 (505)
T TIGR00595 223 LCCPNCDVSL----------TYHKKEGKLRCHYCGYQEP------------IPKTCPQCGSE 262 (505)
T ss_pred cCCCCCCCce----------EEecCCCeEEcCCCcCcCC------------CCCCCCCCCCC
Confidence 4577776542 2233444567777775432 14567777653
No 221
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=34.41 E-value=16 Score=28.63 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=8.3
Q ss_pred CCcccCccCCcCCC
Q psy13389 374 KPFKCSMCDEGFPK 387 (617)
Q Consensus 374 ~~~~C~~C~~~f~~ 387 (617)
..|.|..|++.|.-
T Consensus 52 GIW~C~~C~~~~AG 65 (91)
T TIGR00280 52 GIWTCRKCGAKFAG 65 (91)
T ss_pred EEEEcCCCCCEEeC
Confidence 34666666666643
No 222
>KOG4124|consensus
Probab=34.23 E-value=20 Score=35.25 Aligned_cols=83 Identities=14% Similarity=0.192 Sum_probs=46.4
Q ss_pred CCCCCc--cccccccCchhHHHHHhhhCCC--CccccccccCCCCCCCCcccccCccccccccchhHHHHHhhhhcCCCC
Q psy13389 427 EPIPCD--KCPEIFEKKTDLQEHVDKCHNL--HEEDEEEGLDEFDAPKEKSFNCSKCLNIVRIPVEIKSLVEKLTSEGVP 502 (617)
Q Consensus 427 ~~~~C~--~C~~~f~~~~~l~~H~~~~H~~--~~~~~~~~~~~~~~~~~k~f~C~~C~~~f~~~~~l~~H~~~~~~~~~~ 502 (617)
.+|+|+ .|.+.+.....|+.|...-|.. ............-....|+|+|++|.+++..--. +.
T Consensus 348 ~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i~~~~~k~~~~------------l~ 415 (442)
T KOG4124|consen 348 KPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNLNG------------LK 415 (442)
T ss_pred CCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChhhhhhhccCCC------------CC
Confidence 456664 4777777777777776665531 1111111222223345789999999887664332 33
Q ss_pred Cccccccccccccccccee
Q psy13389 503 AVQAYEHGEDAARDADILV 521 (617)
Q Consensus 503 ~~~~~~~~~~~~~~adiv~ 521 (617)
+.+.+++..-...++|+.+
T Consensus 416 ~~~~~~~~~~s~~~~~~~~ 434 (442)
T KOG4124|consen 416 YHRTHSHLQVSMAQAQREV 434 (442)
T ss_pred ceeehhhhhhhhhhhhhhc
Confidence 4444445554455555543
No 223
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=33.86 E-value=19 Score=30.70 Aligned_cols=24 Identities=33% Similarity=0.688 Sum_probs=13.0
Q ss_pred ccCCccccccCChhhHHHHHhhhcCCC
Q psy13389 319 HACSICTESFSQKSNLYIHLKLQHGVN 345 (617)
Q Consensus 319 ~~C~~C~~~f~~~~~l~~H~~~h~~~~ 345 (617)
..|-+||+.|.. |++|++.|||..
T Consensus 73 i~clecGk~~k~---LkrHL~~~~glt 96 (132)
T PF05443_consen 73 IICLECGKKFKT---LKRHLRTHHGLT 96 (132)
T ss_dssp EE-TBT--EESB---HHHHHHHTT-S-
T ss_pred eEEccCCcccch---HHHHHHHccCCC
Confidence 457777777765 477777777654
No 224
>KOG2593|consensus
Probab=33.62 E-value=38 Score=34.68 Aligned_cols=19 Identities=32% Similarity=0.702 Sum_probs=9.5
Q ss_pred CCceecCCCCCcCCCHHHH
Q psy13389 260 SKRYLCTMCPKCFTRKDDL 278 (617)
Q Consensus 260 ~~~~~C~~C~~~f~~~~~L 278 (617)
..-|.|+.|.+.|+....+
T Consensus 126 ~~~Y~Cp~C~kkyt~Lea~ 144 (436)
T KOG2593|consen 126 VAGYVCPNCQKKYTSLEAL 144 (436)
T ss_pred cccccCCccccchhhhHHH
Confidence 3345555555555544433
No 225
>PRK14873 primosome assembly protein PriA; Provisional
Probab=33.62 E-value=26 Score=39.13 Aligned_cols=10 Identities=20% Similarity=0.607 Sum_probs=4.9
Q ss_pred CCccCCCCCC
Q psy13389 345 NPFKCDVCPN 354 (617)
Q Consensus 345 ~~~~C~~C~~ 354 (617)
+...|.+||.
T Consensus 409 ~~l~Ch~CG~ 418 (665)
T PRK14873 409 GTPRCRWCGR 418 (665)
T ss_pred CeeECCCCcC
Confidence 3445555553
No 226
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=33.15 E-value=27 Score=30.36 Aligned_cols=49 Identities=16% Similarity=0.454 Sum_probs=20.8
Q ss_pred CCCccccccc------cCchhHHHHHhhhCCCCccccccccCCCCCCCCcccccCccccc
Q psy13389 429 IPCDKCPEIF------EKKTDLQEHVDKCHNLHEEDEEEGLDEFDAPKEKSFNCSKCLNI 482 (617)
Q Consensus 429 ~~C~~C~~~f------~~~~~l~~H~~~~H~~~~~~~~~~~~~~~~~~~k~f~C~~C~~~ 482 (617)
.+|..|++.| ++.+.+..|+.+... .+..+.....-++-.++|-.||.+
T Consensus 15 v~C~~c~kWFCNg~~~~s~SHIv~HLv~srh-----~ev~LH~~s~lgdt~leCy~Cg~~ 69 (152)
T PF09416_consen 15 VKCNTCNKWFCNGRGNTSGSHIVNHLVRSRH-----KEVSLHPDSPLGDTVLECYNCGSR 69 (152)
T ss_dssp EEETTTTEEEES--TTSSS-HHHHHHHHHT--------EEE-TTSTT-S-B---TTT---
T ss_pred eEcCCCCcEeecCCCCCcccHHHHHHHHccC-----CceeeCCCCCCCCcEEEEEecCCC
Confidence 3455555555 356778888765433 122333333346677899999863
No 227
>COG1974 LexA SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]
Probab=31.86 E-value=1.1e+02 Score=28.42 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=47.9
Q ss_pred cccccchhHHHHHhhhhcCCCCCcccccccccccccccceeee-c-cCCccchhhhhcccCccccccccccccccccchh
Q psy13389 481 NIVRIPVEIKSLVEKLTSEGVPAVQAYEHGEDAARDADILVTA-T-YSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDA 558 (617)
Q Consensus 481 ~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~adiv~~~-t-~s~~p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~ 558 (617)
-.+..+..+..|.++....+..... .. ..-+|-++- + ....|++. |+.+ |..+.+++. .-+...+++
T Consensus 35 ~~~~s~~~~~~~l~~L~~~g~i~~~--~~-----~~r~i~~~~~~~~~~vPv~g--~v~A-g~~~~a~~~-~e~~~~l~~ 103 (201)
T COG1974 35 LGLASPSAIHSHLKALERKGYIRRD--PT-----KARAIRILQLTEITGVPVLG--RVAA-GGPISAIED-IEEKIDLPP 103 (201)
T ss_pred hCCCChHHHHHHHHHHhcCCcEEec--CC-----CCcceecccccccccCceeE--eeec-CCCccchhh-hcccccCCH
Confidence 3567788889999988877643221 11 111222221 2 23458776 7888 999999987 777788998
Q ss_pred hhhcCc
Q psy13389 559 AIYSHS 564 (617)
Q Consensus 559 ~~~~~~ 564 (617)
.++..+
T Consensus 104 ~~~~~~ 109 (201)
T COG1974 104 YLVKPP 109 (201)
T ss_pred HHhCCC
Confidence 888876
No 228
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=31.81 E-value=22 Score=33.06 Aligned_cols=28 Identities=18% Similarity=0.557 Sum_probs=16.1
Q ss_pred CCcccCccCCcCCCchhHHHHhhhhcCC
Q psy13389 374 KPFKCSMCDEGFPKKSVLKEHLRVSHNV 401 (617)
Q Consensus 374 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~ 401 (617)
..|.|..|+|.|....-.++|+...|.+
T Consensus 76 ~K~~C~lc~KlFkg~eFV~KHI~nKH~e 103 (214)
T PF04959_consen 76 DKWRCPLCGKLFKGPEFVRKHIFNKHPE 103 (214)
T ss_dssp EEEEE-SSS-EESSHHHHHHHHHHH-HH
T ss_pred CEECCCCCCcccCChHHHHHHHhhcCHH
Confidence 3466777777777777777776665543
No 229
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=31.46 E-value=69 Score=31.25 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=32.1
Q ss_pred ccccccceeeeccCCc------cchhhhhcccCccccccccccccccccchhhhhcCceEEEec
Q psy13389 513 AARDADILVTATYSSV------PVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHSSIFFDS 570 (617)
Q Consensus 513 ~~~~adiv~~~t~s~~------p~~~~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~~~~~~~d~ 570 (617)
....+||||.+|+..- +.+..+++++ |..|.-+ +|.|....|-...-.+.--++|-
T Consensus 175 ~~~~~DivInatp~gm~~~~~~~~~~~~~l~~-~~~v~D~-~y~p~~T~ll~~A~~~G~~~vdG 236 (270)
T TIGR00507 175 PLHRVDLIINATSAGMSGNIDEPPVPAEKLKE-GMVVYDM-VYNPGETPFLAEAKSLGTKTIDG 236 (270)
T ss_pred cccCccEEEECCCCCCCCCCCCCCCCHHHcCC-CCEEEEe-ccCCCCCHHHHHHHHCCCeeeCC
Confidence 3457999999998741 1245677888 7777766 44553332322222222356664
No 230
>KOG1280|consensus
Probab=31.16 E-value=39 Score=33.44 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=18.3
Q ss_pred CCCCccccccccCchhHHHHHhhhCC
Q psy13389 428 PIPCDKCPEIFEKKTDLQEHVDKCHN 453 (617)
Q Consensus 428 ~~~C~~C~~~f~~~~~l~~H~~~~H~ 453 (617)
.|.|++|+..-.+...|..|+...|.
T Consensus 79 SftCPyC~~~Gfte~~f~~Hv~s~Hp 104 (381)
T KOG1280|consen 79 SFTCPYCGIMGFTERQFGTHVLSQHP 104 (381)
T ss_pred cccCCcccccccchhHHHHHhhhcCc
Confidence 36677777777777777777777665
No 231
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=30.50 E-value=12 Score=29.33 Aligned_cols=12 Identities=33% Similarity=0.927 Sum_probs=7.2
Q ss_pred CcccCccCCcCC
Q psy13389 375 PFKCSMCDEGFP 386 (617)
Q Consensus 375 ~~~C~~C~~~f~ 386 (617)
.|.|..|++.|.
T Consensus 53 IW~C~~C~~~~A 64 (90)
T PF01780_consen 53 IWKCKKCGKKFA 64 (90)
T ss_dssp EEEETTTTEEEE
T ss_pred EeecCCCCCEEe
Confidence 366666666654
No 232
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=30.12 E-value=35 Score=26.47 Aligned_cols=27 Identities=44% Similarity=0.512 Sum_probs=21.7
Q ss_pred cceeeeccCCccchh--hhhcccCcccccc
Q psy13389 518 DILVTATYSSVPVLK--YEWLKKKDAHINA 545 (617)
Q Consensus 518 div~~~t~s~~p~~~--~~~~~~~g~~v~~ 545 (617)
||++++|++..++.. -.|+++ +..|..
T Consensus 56 di~i~~~~~~~~~~~~~~~~~~~-~~~v~~ 84 (86)
T cd05191 56 DILVTATPAGVPVLEEATAKINE-GAVVID 84 (86)
T ss_pred CEEEEcCCCCCCchHHHHHhcCC-CCEEEe
Confidence 999999999998887 377888 666554
No 233
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=29.56 E-value=29 Score=34.83 Aligned_cols=50 Identities=34% Similarity=0.314 Sum_probs=36.5
Q ss_pred cccccccccccceeeeccCCccchhhhhc---ccCccccccccccccccccchhhhhc
Q psy13389 508 EHGEDAARDADILVTATYSSVPVLKYEWL---KKKDAHINAVGAGLNHHSELDAAIYS 562 (617)
Q Consensus 508 ~~~~~~~~~adiv~~~t~s~~p~~~~~~~---~~~g~~v~~~g~~~~~~~e~~~~~~~ 562 (617)
...++|+..+||+||||.... ||..+++ +. |+.|.++|-+. .||+.+-|.
T Consensus 256 ~~m~~Aa~~gDifiT~TGnkd-Vi~~eh~~~MkD-gaIl~N~GHFd---~EI~~~~L~ 308 (420)
T COG0499 256 MTMEEAAKTGDIFVTATGNKD-VIRKEHFEKMKD-GAILANAGHFD---VEIDVAGLE 308 (420)
T ss_pred EEhHHhhhcCCEEEEccCCcC-ccCHHHHHhccC-CeEEecccccc---eeccHHHHH
Confidence 357888899999999997654 4555554 56 99999999653 367766544
No 234
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=29.30 E-value=19 Score=32.69 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=30.5
Q ss_pred ccccccccccccceeeeccCC---ccchhhhhc---ccCcccccccccc
Q psy13389 507 YEHGEDAARDADILVTATYSS---VPVLKYEWL---KKKDAHINAVGAG 549 (617)
Q Consensus 507 ~~~~~~~~~~adiv~~~t~s~---~p~~~~~~~---~~~g~~v~~~g~~ 549 (617)
..+.++++..||||+.+.|.+ ..+|..+.+ ++ |+.+.++|-.
T Consensus 82 ~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~-ga~lvN~aRG 129 (178)
T PF02826_consen 82 YVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKP-GAVLVNVARG 129 (178)
T ss_dssp ESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTT-TEEEEESSSG
T ss_pred eeehhhhcchhhhhhhhhccccccceeeeeeeeecccc-ceEEEeccch
Confidence 358889999999999988754 477776655 56 8888888765
No 235
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=29.28 E-value=22 Score=27.86 Aligned_cols=14 Identities=21% Similarity=0.660 Sum_probs=8.4
Q ss_pred CCcccCccCCcCCC
Q psy13389 374 KPFKCSMCDEGFPK 387 (617)
Q Consensus 374 ~~~~C~~C~~~f~~ 387 (617)
..|.|..|++.|.-
T Consensus 53 GIW~C~~C~~~~AG 66 (90)
T PRK03976 53 GIWECRKCGAKFAG 66 (90)
T ss_pred EEEEcCCCCCEEeC
Confidence 34666666666653
No 236
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=28.93 E-value=27 Score=36.48 Aligned_cols=41 Identities=37% Similarity=0.315 Sum_probs=30.2
Q ss_pred ccccccccccceeeeccCCccchhh---hhcccCcccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKY---EWLKKKDAHINAVGAGLN 551 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~---~~~~~~g~~v~~~g~~~~ 551 (617)
+.++++..+|||+++|... .+|.. ..+++ |+.+..+|....
T Consensus 260 ~l~eal~~aDVVI~aTG~~-~vI~~~~~~~mK~-GailiNvG~~d~ 303 (425)
T PRK05476 260 TMEEAAELGDIFVTATGNK-DVITAEHMEAMKD-GAILANIGHFDN 303 (425)
T ss_pred CHHHHHhCCCEEEECCCCH-HHHHHHHHhcCCC-CCEEEEcCCCCC
Confidence 3567778999999998543 35654 34578 999999998743
No 237
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=28.74 E-value=37 Score=33.27 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=32.9
Q ss_pred cccccccchhHHHHHhhhhcCCCCCcccccccccccccccceeeeccCC
Q psy13389 479 CLNIVRIPVEIKSLVEKLTSEGVPAVQAYEHGEDAARDADILVTATYSS 527 (617)
Q Consensus 479 C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~adiv~~~t~s~ 527 (617)
|.+.+.....+..-.+......+..+....++.+|+++||+|.|=+..+
T Consensus 184 ~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvWvS 232 (310)
T COG0078 184 TPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVWVS 232 (310)
T ss_pred CCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCccc
Confidence 3355555555555555443333445778899999999999999877543
No 238
>PRK08605 D-lactate dehydrogenase; Validated
Probab=28.34 E-value=25 Score=35.53 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=33.3
Q ss_pred ccccccccccccceeeeccCCc---cchh---hhhcccCcccccccccccc
Q psy13389 507 YEHGEDAARDADILVTATYSSV---PVLK---YEWLKKKDAHINAVGAGLN 551 (617)
Q Consensus 507 ~~~~~~~~~~adiv~~~t~s~~---p~~~---~~~~~~~g~~v~~~g~~~~ 551 (617)
..+.++++..||+|+.++|.+. -++. ..++++ |+.+..++....
T Consensus 191 ~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~-gailIN~sRG~~ 240 (332)
T PRK08605 191 KDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKK-GAVFVNCARGSL 240 (332)
T ss_pred cCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCC-CcEEEECCCCcc
Confidence 4578889999999999998753 3443 356788 999988887644
No 239
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=28.33 E-value=43 Score=39.40 Aligned_cols=21 Identities=19% Similarity=0.407 Sum_probs=13.4
Q ss_pred ccccccccccChHhHHHHHHcCCCCCCcccccc
Q psy13389 405 KCDICFKLFTKKSNLRTHIKTHEPIPCDKCPEI 437 (617)
Q Consensus 405 ~C~~C~~~f~~~~~l~~H~~~h~~~~C~~C~~~ 437 (617)
.|+.||.... .+|.|+.||..
T Consensus 681 fCP~CGs~te------------~vy~CPsCGae 701 (1337)
T PRK14714 681 RCPDCGTHTE------------PVYVCPDCGAE 701 (1337)
T ss_pred cCcccCCcCC------------CceeCccCCCc
Confidence 5777776531 24677777775
No 240
>PRK05580 primosome assembly protein PriA; Validated
Probab=28.00 E-value=40 Score=37.89 Aligned_cols=9 Identities=22% Similarity=0.822 Sum_probs=4.1
Q ss_pred CccCCCCCC
Q psy13389 346 PFKCDVCPN 354 (617)
Q Consensus 346 ~~~C~~C~~ 354 (617)
...|.+||.
T Consensus 408 ~l~Ch~Cg~ 416 (679)
T PRK05580 408 RLRCHHCGY 416 (679)
T ss_pred eEECCCCcC
Confidence 344555543
No 241
>KOG3408|consensus
Probab=27.88 E-value=63 Score=26.68 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=20.6
Q ss_pred CCCcccccCCCCccccCChHHHHHHHHh
Q psy13389 51 KKMVKKFKCNICPKRYARKNRLTNHLRT 78 (617)
Q Consensus 51 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~ 78 (617)
..+...|.|-.|.+-|.+...|..|.++
T Consensus 52 lPG~GqfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 52 LPGGGQFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred CCCCceeehhhhhhhhcchHHHHHHHhc
Confidence 3445567888888888888888888764
No 242
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=27.55 E-value=31 Score=19.34 Aligned_cols=6 Identities=33% Similarity=1.176 Sum_probs=2.9
Q ss_pred cCccCC
Q psy13389 378 CSMCDE 383 (617)
Q Consensus 378 C~~C~~ 383 (617)
|+.||.
T Consensus 16 C~~CG~ 21 (23)
T PF13240_consen 16 CPNCGT 21 (23)
T ss_pred hhhhCC
Confidence 555544
No 243
>PLN02928 oxidoreductase family protein
Probab=26.90 E-value=26 Score=35.75 Aligned_cols=51 Identities=25% Similarity=0.229 Sum_probs=36.5
Q ss_pred ccccccccccccceeeeccCC---ccchhhhh---cccCccccccccccccccccchhhhhc
Q psy13389 507 YEHGEDAARDADILVTATYSS---VPVLKYEW---LKKKDAHINAVGAGLNHHSELDAAIYS 562 (617)
Q Consensus 507 ~~~~~~~~~~adiv~~~t~s~---~p~~~~~~---~~~~g~~v~~~g~~~~~~~e~~~~~~~ 562 (617)
..+.++++..||||+.++|.+ ..+|..+. +++ |+.++.+|-..- +|.+.|.
T Consensus 217 ~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~-ga~lINvaRG~l----Vde~AL~ 273 (347)
T PLN02928 217 HEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKK-GALLVNIARGGL----LDYDAVL 273 (347)
T ss_pred ccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCC-CeEEEECCCccc----cCHHHHH
Confidence 357889999999999998754 46776544 477 999999986533 5554433
No 244
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=26.68 E-value=37 Score=26.39 Aligned_cols=14 Identities=14% Similarity=0.569 Sum_probs=9.3
Q ss_pred ccccCCCCccccCC
Q psy13389 55 KKFKCNICPKRYAR 68 (617)
Q Consensus 55 ~~~~C~~C~~~f~~ 68 (617)
.|-+|..||+.|..
T Consensus 57 ~Pa~CkkCGfef~~ 70 (97)
T COG3357 57 RPARCKKCGFEFRD 70 (97)
T ss_pred cChhhcccCccccc
Confidence 45667777777764
No 245
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=26.39 E-value=28 Score=36.11 Aligned_cols=47 Identities=32% Similarity=0.325 Sum_probs=32.9
Q ss_pred cccccccccceeeeccCCccchhh---hhcccCccccccccccccccccchhhhh
Q psy13389 510 GEDAARDADILVTATYSSVPVLKY---EWLKKKDAHINAVGAGLNHHSELDAAIY 561 (617)
Q Consensus 510 ~~~~~~~adiv~~~t~s~~p~~~~---~~~~~~g~~v~~~g~~~~~~~e~~~~~~ 561 (617)
.++++..+|||+++|.. ..++.. ..+++ |+.|..+|... .|++.+-+
T Consensus 244 leeal~~aDVVItaTG~-~~vI~~~~~~~mK~-GailiN~G~~~---~eId~~aL 293 (406)
T TIGR00936 244 MEEAAKIGDIFITATGN-KDVIRGEHFENMKD-GAIVANIGHFD---VEIDVKAL 293 (406)
T ss_pred HHHHHhcCCEEEECCCC-HHHHHHHHHhcCCC-CcEEEEECCCC---ceeCHHHH
Confidence 45678899999998864 445554 45678 99999999873 24555443
No 246
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=26.07 E-value=32 Score=28.95 Aligned_cols=15 Identities=20% Similarity=0.625 Sum_probs=9.3
Q ss_pred cccccCCCCcccCCh
Q psy13389 93 GSFTCSQCPKTFVDK 107 (617)
Q Consensus 93 ~~~~C~~C~~~f~~~ 107 (617)
+.|.|.+|..+....
T Consensus 79 ~lYeCnIC~etS~ee 93 (140)
T PF05290_consen 79 KLYECNICKETSAEE 93 (140)
T ss_pred CceeccCcccccchh
Confidence 567777776665443
No 247
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=25.77 E-value=28 Score=34.50 Aligned_cols=64 Identities=13% Similarity=0.109 Sum_probs=40.5
Q ss_pred cccccccccccccceeeeccCCcc---ch-h----hhhcccCccccccccccccc-cccchhhhhcCceEEEec
Q psy13389 506 AYEHGEDAARDADILVTATYSSVP---VL-K----YEWLKKKDAHINAVGAGLNH-HSELDAAIYSHSSIFFDS 570 (617)
Q Consensus 506 ~~~~~~~~~~~adiv~~~t~s~~p---~~-~----~~~~~~~g~~v~~~g~~~~~-~~e~~~~~~~~~~~~~d~ 570 (617)
.+.+..+++..+|+|+++.+.... ++ . ...+.+ |..|.-+++..|. .+++...+-.....|+|-
T Consensus 45 ~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~-g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vda 117 (292)
T PRK15059 45 SVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLK-GKTIVDMSSISPIETKRFARQVNELGGDYLDA 117 (292)
T ss_pred ecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCC-CCEEEECCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 446777888999999999987632 22 1 112466 8888888877664 333444444444457775
No 248
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=25.63 E-value=64 Score=25.61 Aligned_cols=47 Identities=34% Similarity=0.249 Sum_probs=32.5
Q ss_pred ccccccccchhHHHHHhhhhcCCCCCc----ccccccccccccccceeeec
Q psy13389 478 KCLNIVRIPVEIKSLVEKLTSEGVPAV----QAYEHGEDAARDADILVTAT 524 (617)
Q Consensus 478 ~C~~~f~~~~~l~~H~~~~~~~~~~~~----~~~~~~~~~~~~adiv~~~t 524 (617)
.||.+-.++..++.-....-...+.++ ..++.......+|||+++.+
T Consensus 7 aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~s~ 57 (93)
T COG3414 7 ACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIKALTDGADIIVTST 57 (93)
T ss_pred ECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEecccccCCCcccEEEEeh
Confidence 588888887777766655444333322 24577788889999999776
No 249
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.18 E-value=30 Score=25.81 Aligned_cols=32 Identities=16% Similarity=0.555 Sum_probs=18.4
Q ss_pred ccccccccccccChHhHHHHHHcCCCCCCccccccc
Q psy13389 403 PFKCDICFKLFTKKSNLRTHIKTHEPIPCDKCPEIF 438 (617)
Q Consensus 403 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~C~~C~~~f 438 (617)
.|.|..|+..| .+.+|+.--.--.|+.|+..+
T Consensus 12 ~Y~c~~cg~~~----dvvq~~~ddplt~ce~c~a~~ 43 (82)
T COG2331 12 SYECTECGNRF----DVVQAMTDDPLTTCEECGARL 43 (82)
T ss_pred EEeecccchHH----HHHHhcccCccccChhhChHH
Confidence 36777776654 344555444344577777644
No 250
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=25.16 E-value=24 Score=39.49 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=0.0
Q ss_pred CccccccccccccChHhHHHHHHcCCCCCCccccccccCchh
Q psy13389 402 NPFKCDICFKLFTKKSNLRTHIKTHEPIPCDKCPEIFEKKTD 443 (617)
Q Consensus 402 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~C~~C~~~f~~~~~ 443 (617)
..|.|+.|+...... .|+.|+........
T Consensus 679 ~~~~Cp~C~~~~~~~-------------~C~~C~~~~~~~~~ 707 (900)
T PF03833_consen 679 PVYVCPDCGIEVEED-------------ECPKCGRETTSYSK 707 (900)
T ss_dssp ------------------------------------------
T ss_pred cceeccccccccCcc-------------ccccccccCcccce
Confidence 347888888765433 68888877655444
No 251
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=25.04 E-value=34 Score=33.81 Aligned_cols=64 Identities=19% Similarity=0.188 Sum_probs=41.3
Q ss_pred cccccccccccccceeeeccCCc---cch---h--hhhcccCccccccccccccc-cccchhhhhcCceEEEec
Q psy13389 506 AYEHGEDAARDADILVTATYSSV---PVL---K--YEWLKKKDAHINAVGAGLNH-HSELDAAIYSHSSIFFDS 570 (617)
Q Consensus 506 ~~~~~~~~~~~adiv~~~t~s~~---p~~---~--~~~~~~~g~~v~~~g~~~~~-~~e~~~~~~~~~~~~~d~ 570 (617)
...+..+++..+|+|+++.++.. .++ . ...+++ |..|..+++..|. .+++...+..+.-.|+|.
T Consensus 42 ~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~-g~~vid~st~~p~~~~~~~~~~~~~g~~~vda 114 (288)
T TIGR01692 42 AAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAK-GSLLIDCSTIDPDSARKLAELAAAHGAVFMDA 114 (288)
T ss_pred ecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCC-CCEEEECCCCCHHHHHHHHHHHHHcCCcEEEC
Confidence 45677888999999999998743 233 1 123566 8888888777774 445554444344457775
No 252
>COG4896 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.91 E-value=28 Score=24.64 Aligned_cols=37 Identities=14% Similarity=0.407 Sum_probs=14.8
Q ss_pred cCCCCCCCccCChhHHHHHhhhccCCCCcccCccCCc
Q psy13389 348 KCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEG 384 (617)
Q Consensus 348 ~C~~C~~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 384 (617)
+|.+|++..+.....+..-.......+.|.|+.|.-+
T Consensus 4 kCiiCd~v~~iD~rt~~tKrLrN~PIrtymC~eC~~R 40 (68)
T COG4896 4 KCIICDRVDEIDNRTFKTKRLRNKPIRTYMCPECEHR 40 (68)
T ss_pred eEEEecceeeecchhHHHHHhhCCCceeEechhhHhh
Confidence 4555554333333333332222222333555555433
No 253
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=24.80 E-value=31 Score=31.70 Aligned_cols=37 Identities=24% Similarity=0.037 Sum_probs=23.6
Q ss_pred ccccccccceeeeccCCc--cchhhhhcccCccccccccc
Q psy13389 511 EDAARDADILVTATYSSV--PVLKYEWLKKKDAHINAVGA 548 (617)
Q Consensus 511 ~~~~~~adiv~~~t~s~~--p~~~~~~~~~~g~~v~~~g~ 548 (617)
.+++.++|||+++|++.. |.......++ +..|.-+..
T Consensus 92 ~~~~~~~diVi~at~~g~~~~~~~~~~~~~-~~vv~D~~~ 130 (194)
T cd01078 92 AAAIKGADVVFAAGAAGVELLEKLAWAPKP-LAVAADVNA 130 (194)
T ss_pred HHHHhcCCEEEECCCCCceechhhhcccCc-eeEEEEccC
Confidence 467788999999999887 4333333334 555555433
No 254
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=23.48 E-value=35 Score=34.64 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=33.6
Q ss_pred ccccccccccccccceeeeccCCc---cchh--hhhcccCccccccccccccc
Q psy13389 505 QAYEHGEDAARDADILVTATYSSV---PVLK--YEWLKKKDAHINAVGAGLNH 552 (617)
Q Consensus 505 ~~~~~~~~~~~~adiv~~~t~s~~---p~~~--~~~~~~~g~~v~~~g~~~~~ 552 (617)
.+..+..+++.++|+|++++|+.. .++. ...+.+ |..|..+++..|.
T Consensus 70 ~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~-g~IVId~ST~~~~ 121 (342)
T PRK12557 70 KVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPE-NAVICNTCTVSPV 121 (342)
T ss_pred EEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCC-CCEEEEecCCCHH
Confidence 445677788899999999999764 4443 234566 8888888776554
No 255
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=23.36 E-value=51 Score=27.77 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=20.5
Q ss_pred cccCccCCcCCCchhHHHHhhhhcCCCc
Q psy13389 376 FKCSMCDEGFPKKSVLKEHLRVSHNVNP 403 (617)
Q Consensus 376 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 403 (617)
..|-.+|+.|. .|++|+.+|++.-|
T Consensus 77 IicLEDGkkfK---SLKRHL~t~~gmTP 101 (148)
T COG4957 77 IICLEDGKKFK---SLKRHLTTHYGLTP 101 (148)
T ss_pred EEEeccCcchH---HHHHHHhcccCCCH
Confidence 46999999995 59999999987643
No 256
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=23.35 E-value=40 Score=35.18 Aligned_cols=47 Identities=28% Similarity=0.411 Sum_probs=33.6
Q ss_pred ccccccccceeeeccCCccchh---hhhcccCccccccccccccccccchhhhhc
Q psy13389 511 EDAARDADILVTATYSSVPVLK---YEWLKKKDAHINAVGAGLNHHSELDAAIYS 562 (617)
Q Consensus 511 ~~~~~~adiv~~~t~s~~p~~~---~~~~~~~g~~v~~~g~~~~~~~e~~~~~~~ 562 (617)
++++.++|||++||.+.. ++. ...+++ |..|..+|.. ..|++...+.
T Consensus 252 ~e~v~~aDVVI~atG~~~-~i~~~~l~~mk~-GgilvnvG~~---~~eId~~~L~ 301 (413)
T cd00401 252 EEAVKEGDIFVTTTGNKD-IITGEHFEQMKD-GAIVCNIGHF---DVEIDVKGLK 301 (413)
T ss_pred HHHHcCCCEEEECCCCHH-HHHHHHHhcCCC-CcEEEEeCCC---CCccCHHHHH
Confidence 467788999999987544 444 345688 9999999965 3467776544
No 257
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=23.19 E-value=34 Score=34.01 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=34.0
Q ss_pred cccccccccccccccceeeeccCCc---cchh--hhhcccCcccccccccccc
Q psy13389 504 VQAYEHGEDAARDADILVTATYSSV---PVLK--YEWLKKKDAHINAVGAGLN 551 (617)
Q Consensus 504 ~~~~~~~~~~~~~adiv~~~t~s~~---p~~~--~~~~~~~g~~v~~~g~~~~ 551 (617)
+..+.+..++++++|||+++.+... .++. ...+++ |+.|+-+++-.|
T Consensus 69 A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~-GaIVID~STIsP 120 (341)
T TIGR01724 69 VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPE-NAVICNTCTVSP 120 (341)
T ss_pred CeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCC-CCEEEECCCCCH
Confidence 3456788899999999999999765 3332 234567 888888877655
No 258
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=22.98 E-value=38 Score=21.88 Aligned_cols=15 Identities=27% Similarity=0.549 Sum_probs=12.7
Q ss_pred ccccCccccccccch
Q psy13389 473 SFNCSKCLNIVRIPV 487 (617)
Q Consensus 473 ~f~C~~C~~~f~~~~ 487 (617)
||+|..|++.|-..-
T Consensus 12 ~f~C~~C~~~FC~~H 26 (39)
T smart00154 12 GFKCRHCGNLFCGEH 26 (39)
T ss_pred CeECCccCCcccccc
Confidence 899999999998543
No 259
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=22.96 E-value=35 Score=33.88 Aligned_cols=64 Identities=20% Similarity=0.120 Sum_probs=40.5
Q ss_pred cccccccccccccceeeeccCCc---cchhh-----hhcccCccccccccccccc-cccchhhhhcCceEEEec
Q psy13389 506 AYEHGEDAARDADILVTATYSSV---PVLKY-----EWLKKKDAHINAVGAGLNH-HSELDAAIYSHSSIFFDS 570 (617)
Q Consensus 506 ~~~~~~~~~~~adiv~~~t~s~~---p~~~~-----~~~~~~g~~v~~~g~~~~~-~~e~~~~~~~~~~~~~d~ 570 (617)
.+.+..+++..+|+|++++++.. .++.. ..+++ |..|..+++..|. .+++...+..+.--|+|-
T Consensus 47 ~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~-g~lvid~sT~~p~~~~~l~~~l~~~g~~~lda 119 (296)
T PRK15461 47 PAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSR-DALVIDMSTIHPLQTDKLIADMQAKGFSMMDV 119 (296)
T ss_pred ccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCC-CCEEEECCCCCHHHHHHHHHHHHHcCCcEEEc
Confidence 44577788899999999998764 34321 12456 8888888888774 234444444333345554
No 260
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=22.68 E-value=24 Score=27.96 Aligned_cols=10 Identities=30% Similarity=0.953 Sum_probs=5.3
Q ss_pred CcccCccCCc
Q psy13389 375 PFKCSMCDEG 384 (617)
Q Consensus 375 ~~~C~~C~~~ 384 (617)
.|.|+.||..
T Consensus 22 ~FtCp~Cghe 31 (104)
T COG4888 22 TFTCPRCGHE 31 (104)
T ss_pred eEecCccCCe
Confidence 4555555544
No 261
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=22.40 E-value=41 Score=33.00 Aligned_cols=39 Identities=36% Similarity=0.386 Sum_probs=28.6
Q ss_pred ccccccccceeeeccC--Cccchhhh--hcccCccccccccccc
Q psy13389 511 EDAARDADILVTATYS--SVPVLKYE--WLKKKDAHINAVGAGL 550 (617)
Q Consensus 511 ~~~~~~adiv~~~t~s--~~p~~~~~--~~~~~g~~v~~~g~~~ 550 (617)
.+++.+||+|+.++|- +.+++..- .+++ |+.|.-+||-.
T Consensus 59 ~~~~~~aD~VivavPi~~~~~~l~~l~~~l~~-g~iv~Dv~S~K 101 (279)
T COG0287 59 AEAAAEADLVIVAVPIEATEEVLKELAPHLKK-GAIVTDVGSVK 101 (279)
T ss_pred hhhcccCCEEEEeccHHHHHHHHHHhcccCCC-CCEEEeccccc
Confidence 6778889999999984 34666522 4677 88888887753
No 262
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=22.18 E-value=33 Score=33.64 Aligned_cols=65 Identities=26% Similarity=0.258 Sum_probs=41.4
Q ss_pred ccccccccccccccceeeeccCCc---cchh-----hhhcccCcccccccccccccc-ccchhhhhcCceEEEec
Q psy13389 505 QAYEHGEDAARDADILVTATYSSV---PVLK-----YEWLKKKDAHINAVGAGLNHH-SELDAAIYSHSSIFFDS 570 (617)
Q Consensus 505 ~~~~~~~~~~~~adiv~~~t~s~~---p~~~-----~~~~~~~g~~v~~~g~~~~~~-~e~~~~~~~~~~~~~d~ 570 (617)
..+.++.+++..||||+|.-++.. -|+- .++++| |..|+-+.+..|.- +++...+-...--++|-
T Consensus 46 ~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~-G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDA 119 (286)
T COG2084 46 TVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKP-GAIVIDMSTISPETARELAAALAAKGLEFLDA 119 (286)
T ss_pred cccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCC-CCEEEECCCCCHHHHHHHHHHHHhcCCcEEec
Confidence 455678899999999999988764 2221 334567 99999998887742 22222222222366675
No 263
>KOG4167|consensus
Probab=22.15 E-value=9.7 Score=41.28 Aligned_cols=28 Identities=11% Similarity=0.212 Sum_probs=25.0
Q ss_pred cccccCccccccccchhHHHHHhhhhcC
Q psy13389 472 KSFNCSKCLNIVRIPVEIKSLVEKLTSE 499 (617)
Q Consensus 472 k~f~C~~C~~~f~~~~~l~~H~~~~~~~ 499 (617)
.-|.|..|+|.|---.++..|++.|...
T Consensus 791 giFpCreC~kvF~KiKSrNAHMK~Hr~q 818 (907)
T KOG4167|consen 791 GIFPCRECGKVFFKIKSRNAHMKTHRQQ 818 (907)
T ss_pred ceeehHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4599999999999999999999998754
No 264
>PF09963 DUF2197: Uncharacterized protein conserved in bacteria (DUF2197); InterPro: IPR019241 This family represents various hypothetical bacterial proteins with no known function.
Probab=22.06 E-value=34 Score=24.08 Aligned_cols=6 Identities=33% Similarity=1.398 Sum_probs=2.3
Q ss_pred cccCcc
Q psy13389 376 FKCSMC 381 (617)
Q Consensus 376 ~~C~~C 381 (617)
|.|+.|
T Consensus 32 YmC~eC 37 (56)
T PF09963_consen 32 YMCDEC 37 (56)
T ss_pred eeChhH
Confidence 333333
No 265
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=21.73 E-value=52 Score=27.72 Aligned_cols=24 Identities=38% Similarity=0.629 Sum_probs=14.3
Q ss_pred eecCCCCCcCCCHHHHHHHHHhcCCCC
Q psy13389 263 YLCTMCPKCFTRKDDLNRHMRNHDGLK 289 (617)
Q Consensus 263 ~~C~~C~~~f~~~~~L~~H~~~h~~~~ 289 (617)
..|-.+|+.|++ |++|+.+|.+..
T Consensus 77 IicLEDGkkfKS---LKRHL~t~~gmT 100 (148)
T COG4957 77 IICLEDGKKFKS---LKRHLTTHYGLT 100 (148)
T ss_pred EEEeccCcchHH---HHHHHhcccCCC
Confidence 456666666643 666666665543
No 266
>PRK08818 prephenate dehydrogenase; Provisional
Probab=21.68 E-value=31 Score=35.37 Aligned_cols=41 Identities=10% Similarity=-0.034 Sum_probs=30.1
Q ss_pred ccccccccccceeeeccCC--ccchhh--h---hcccCccccccccccc
Q psy13389 509 HGEDAARDADILVTATYSS--VPVLKY--E---WLKKKDAHINAVGAGL 550 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~--~p~~~~--~---~~~~~g~~v~~~g~~~ 550 (617)
+.++++..||+|+.|||-. .+++.. . +++| |+.|.-|||-.
T Consensus 44 ~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~-~~iVtDVgSvK 91 (370)
T PRK08818 44 DPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAA-GQLWLDVTSIK 91 (370)
T ss_pred CHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCC-CeEEEECCCCc
Confidence 4456788999999999854 466652 2 2678 99998888854
No 267
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=21.54 E-value=79 Score=31.03 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=26.8
Q ss_pred cccccccccceeeeccCCc-c-----chhhhhcccCccccccccccccc
Q psy13389 510 GEDAARDADILVTATYSSV-P-----VLKYEWLKKKDAHINAVGAGLNH 552 (617)
Q Consensus 510 ~~~~~~~adiv~~~t~s~~-p-----~~~~~~~~~~g~~v~~~g~~~~~ 552 (617)
..+++..+||||.|||+.. | -+..+|+.+ +..|.-+ .|.|.
T Consensus 179 ~~~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~-~~~v~Di-vY~P~ 225 (278)
T PRK00258 179 LQEELADFDLIINATSAGMSGELPLPPLPLSLLRP-GTIVYDM-IYGPL 225 (278)
T ss_pred chhccccCCEEEECCcCCCCCCCCCCCCCHHHcCC-CCEEEEe-ecCCC
Confidence 3466788999999998653 1 234567777 6655555 44563
No 268
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=21.53 E-value=55 Score=23.01 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=8.2
Q ss_pred cCCCCCCccccccc
Q psy13389 425 THEPIPCDKCPEIF 438 (617)
Q Consensus 425 ~h~~~~C~~C~~~f 438 (617)
.+..|.|+.||..+
T Consensus 11 ~~v~~~Cp~cGipt 24 (55)
T PF13824_consen 11 AHVNFECPDCGIPT 24 (55)
T ss_pred cccCCcCCCCCCcC
Confidence 34456677776554
No 269
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=21.16 E-value=62 Score=30.66 Aligned_cols=57 Identities=19% Similarity=0.166 Sum_probs=35.5
Q ss_pred ccccccccccceeeeccCCccchhhhhcc---cCccccccccccccccccchhhhhcCc-eEEEec
Q psy13389 509 HGEDAARDADILVTATYSSVPVLKYEWLK---KKDAHINAVGAGLNHHSELDAAIYSHS-SIFFDS 570 (617)
Q Consensus 509 ~~~~~~~~adiv~~~t~s~~p~~~~~~~~---~~g~~v~~~g~~~~~~~e~~~~~~~~~-~~~~d~ 570 (617)
+..+++..+||||.+|+ ..++..++++ + +..|..+- .|...-++.+..+.. +||+|-
T Consensus 90 ~l~~~l~~~dvlIgaT~--~G~~~~~~l~~m~~-~~ivf~ls--nP~~e~~~~~A~~~ga~i~a~G 150 (226)
T cd05311 90 TLKEALKGADVFIGVSR--PGVVKKEMIKKMAK-DPIVFALA--NPVPEIWPEEAKEAGADIVATG 150 (226)
T ss_pred CHHHHHhcCCEEEeCCC--CCCCCHHHHHhhCC-CCEEEEeC--CCCCcCCHHHHHHcCCcEEEeC
Confidence 45567788999999997 5566667776 6 54455544 555433554444433 467764
No 270
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=21.01 E-value=41 Score=27.83 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=7.0
Q ss_pred cccCccCCcCCC
Q psy13389 376 FKCSMCDEGFPK 387 (617)
Q Consensus 376 ~~C~~C~~~f~~ 387 (617)
+.|..|+..|..
T Consensus 71 ~~C~~Cg~~~~~ 82 (113)
T PRK12380 71 AWCWDCSQVVEI 82 (113)
T ss_pred EEcccCCCEEec
Confidence 556666665543
No 271
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=20.30 E-value=1.5e+02 Score=19.73 Aligned_cols=6 Identities=50% Similarity=1.553 Sum_probs=2.4
Q ss_pred eecCCC
Q psy13389 263 YLCTMC 268 (617)
Q Consensus 263 ~~C~~C 268 (617)
|.|..|
T Consensus 38 ~~C~~C 43 (46)
T PF12760_consen 38 YRCKAC 43 (46)
T ss_pred EECCCC
Confidence 334333
No 272
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=20.18 E-value=57 Score=22.20 Aligned_cols=8 Identities=25% Similarity=0.941 Sum_probs=3.8
Q ss_pred cccCccCC
Q psy13389 376 FKCSMCDE 383 (617)
Q Consensus 376 ~~C~~C~~ 383 (617)
|.|..||.
T Consensus 38 ~~CGkCgy 45 (51)
T COG1998 38 WACGKCGY 45 (51)
T ss_pred eEeccccc
Confidence 44444444
No 273
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=20.07 E-value=26 Score=29.80 Aligned_cols=15 Identities=27% Similarity=0.718 Sum_probs=8.6
Q ss_pred CCCCCCccccccccC
Q psy13389 426 HEPIPCDKCPEIFEK 440 (617)
Q Consensus 426 h~~~~C~~C~~~f~~ 440 (617)
+..|.|..|++.|..
T Consensus 51 ~qRyrC~~C~~tf~~ 65 (129)
T COG3677 51 HQRYKCKSCGSTFTV 65 (129)
T ss_pred ccccccCCcCcceee
Confidence 445666666666643
No 274
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=20.06 E-value=80 Score=24.52 Aligned_cols=48 Identities=17% Similarity=0.123 Sum_probs=26.4
Q ss_pred ccccccccchhHHHHHhhhhcCCCCCcccc-cccccccccccceeeecc
Q psy13389 478 KCLNIVRIPVEIKSLVEKLTSEGVPAVQAY-EHGEDAARDADILVTATY 525 (617)
Q Consensus 478 ~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~-~~~~~~~~~adiv~~~t~ 525 (617)
+||.+..++..+..-.+..-...+....+. ....++..++|+|+|.++
T Consensus 6 vCg~G~gtS~ml~~ki~~~~~~~~~~~~v~~~~~~~~~~~~Dliitt~~ 54 (87)
T cd05567 6 ACDAGMGSSAMGASVLRKKLKKAGLEIPVTNSAIDELPSDADLVVTHAS 54 (87)
T ss_pred ECCCCccHHHHHHHHHHHHHHHCCCceEEEEcchhhCCCCCCEEEEChH
Confidence 588888887776666555443322222221 111111167899986654
Done!