RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13389
(617 letters)
>gnl|CDD|225280 COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin
homolog [Amino acid transport and metabolism].
Length = 330
Score = 79.7 bits (197), Expect = 4e-16
Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 11/136 (8%)
Query: 490 KSLVEKLTSEGVPAVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAG 549
++ +L G AV A + E+A ADI+VTAT S+ PVLK EWL K HINA+GA
Sbjct: 169 EAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTEPVLKAEWL-KPGTHINAIGAD 227
Query: 550 LNHHSELDAAIYSHS-SIFFDSEAAAR---GELKGLYEQ---VPANMVGEVGGLIAANL- 601
ELD + + + + DS R GE+ P +V E+G ++A +
Sbjct: 228 APGKRELDPEVLARADRVVVDSLEQTRKESGEISQAVAAGVLSPDAIVAELGDVVAGKIP 287
Query: 602 -TRDARYPLTVFHSMG 616
T+F S+G
Sbjct: 288 GRESDDEI-TLFDSVG 302
>gnl|CDD|217026 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/mu-crystallin
family. This family contains the bacterial Ornithine
cyclodeaminase enzyme EC:4.3.1.12, which catalyzes the
deamination of ornithine to proline. This family also
contains mu-Crystallin the major component of the eye
lens in several Australian marsupials, mRNA for this
protein has also been found in human retina.
Length = 313
Score = 78.6 bits (194), Expect = 6e-16
Identities = 47/139 (33%), Positives = 61/139 (43%), Gaps = 13/139 (9%)
Query: 484 RIPVEIKSLVEKLTSEGVPAVQAYEHGEDAARDADILVTATYS-SVPVLKYEWLKKKDAH 542
R P + L G + A E+A ADI+VT T P+LK EW+K H
Sbjct: 162 RDPEAAEKFARNLQEPGFE-IVACTSAEEAVEGADIVVTVTPDKEFPILKAEWVKP-GVH 219
Query: 543 INAVGAGLNHHSELDAAIYSHSSIFFDSEAAAR--GELKGLYEQVPANMVGEVGGLIAAN 600
INAVGA +ELD I + IF D AR GE + + V E+G +I
Sbjct: 220 INAVGADCPGKTELDPDILLRADIFVDYPPQARIEGE---IQQLPDDAPVPELGDVITGK 276
Query: 601 L---TRDARYPLTVFHSMG 616
T D +T+F S G
Sbjct: 277 KPGRTNDED--ITLFDSTG 293
>gnl|CDD|236313 PRK08618, PRK08618, ornithine cyclodeaminase; Validated.
Length = 325
Score = 67.4 bits (165), Expect = 4e-12
Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 15/128 (11%)
Query: 500 GVPAVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDA- 558
++A +ADI+VT T + PV E L KK HINAVG+ + EL +
Sbjct: 177 NTEIY-VVNSADEAIEEADIIVTVTNAKTPVFS-EKL-KKGVHINAVGSFMPDMQELPSE 233
Query: 559 AIYSHSSIFFDSEAAARGELKGLYEQVP-------ANMV-GEVGGLIAANLT-RDARYPL 609
AI + + +S+ AA E L VP + + GE+G +I+ + R++ +
Sbjct: 234 AIARANKVVVESKEAALEETGDL--IVPLKEGLISKDDIHGELGQIISGEIAGRESDEEI 291
Query: 610 TVFHSMGV 617
TVF S+G+
Sbjct: 292 TVFKSVGL 299
>gnl|CDD|131424 TIGR02371, ala_DH_arch, alanine dehydrogenase, Archaeoglobus
fulgidus type. This enzyme, a homolog of bacterial
ornithine cyclodeaminases and marsupial mu-crystallins,
is a homodimeric, NAD-dependent alanine dehydrogenase
found in Archaeoglobus fulgidus and several other
Archaea. For a number of close homologs, scoring between
trusted and noise cutoffs, it is not clear at present
what is the enzymatic activity.
Length = 325
Score = 63.4 bits (154), Expect = 8e-11
Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 18/148 (12%)
Query: 483 VRIPVEIKSLVEKLT---SEGVPAVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKK 539
V + S EK S+ V+A +A DILVT T S PV+K +W+ +
Sbjct: 156 VSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRKPVVKADWV-SE 214
Query: 540 DAHINAVGAGLNHHSELDAAIYSHSSIFFDS--EAAARGEL-----KGLY--EQVPANMV 590
HINA+GA ELD I ++ IF D +A GE+ KG+ + + A++
Sbjct: 215 GTHINAIGADAPGKQELDPEILKNAKIFVDDLEQATHSGEINVPISKGIIRVDDLHASL- 273
Query: 591 GEV-GGLIAANLTRDARYPLTVFHSMGV 617
GEV GL R + +T+F S G+
Sbjct: 274 GEVITGLKEG---RTSPEEITIFDSTGL 298
>gnl|CDD|180367 PRK06046, PRK06046, alanine dehydrogenase; Validated.
Length = 326
Score = 62.4 bits (152), Expect = 1e-10
Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 483 VRIPVEIKSLVEKLTSEGVPAVQAYEHGEDAARDA---DILVTATYSSVPVLKYEWLKKK 539
VR+ KS EK V + +A DILVT T S PV+K EW+ K+
Sbjct: 157 VRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACDCDILVTTTPSRKPVVKAEWI-KE 215
Query: 540 DAHINAVGAGLNHHSELDAAIYSHSSIFFDS--EAAARGEL-----KGLYEQVPANMVGE 592
HINA+GA ELD I + + D +A GE+ KG+ ++
Sbjct: 216 GTHINAIGADAPGKQELDPEILLRAKVVVDDMEQALHSGEINVPLSKGIIR--EEDIYAT 273
Query: 593 VGGLIAANLT-RDARYPLTVFHSMG 616
+G +IA R++ +T+F S G
Sbjct: 274 LGEVIAGKKPGRESDEEITIFDSTG 298
>gnl|CDD|236221 PRK08291, PRK08291, ectoine utilization protein EutC; Validated.
Length = 330
Score = 60.4 bits (147), Expect = 8e-10
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 9/122 (7%)
Query: 484 RIPVEIKSLVEKLTSE-GVPAVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAH 542
R + ++ L +E G+P V +A ADI+VT T S P+LK EWL H
Sbjct: 165 RDAAKAEAYAADLRAELGIP-VTVARDVHEAVAGADIIVTTTPSEEPILKAEWL-HPGLH 222
Query: 543 INAVGAGLNHHSELDAAIYSHSSIFF-DSEAAAR--GELKGLYEQ--VPANMV-GEVGGL 596
+ A+G+ H +E+ A+++ + ++ D + R GEL V A+ V E+G +
Sbjct: 223 VTAMGSDAEHKNEIAPAVFAAADLYVCDRLSQTRRLGELHHAIAAGLVAADAVFPELGQV 282
Query: 597 IA 598
IA
Sbjct: 283 IA 284
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 58.9 bits (142), Expect = 3e-09
Identities = 71/421 (16%), Positives = 123/421 (29%), Gaps = 62/421 (14%)
Query: 57 FKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQ--CPKTFVDKWHLNRHL 114
C C ++R LT H+R+H GE CS C K+F L+RHL
Sbjct: 34 DSCPNCTDSFSRLEHLTRHIRSHT----------GEKPSQCSYSGCDKSFSRPLELSRHL 83
Query: 115 KSHSENKVFRCEQCRFDFYVK-REYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAH 173
++H N + K + + L S S + + + +
Sbjct: 84 RTHHNNPSDLNSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSI 143
Query: 174 EGIKPFQCSVCSESFTQRSN----------------------LNIHLRIHDGIRPFQCNV 211
++ + S L I + I N
Sbjct: 144 SNLRNNPLPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENS 203
Query: 212 CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKC 271
+ + + N + ++ L S +
Sbjct: 204 PLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLS--PKSLLSQSPSSLSSSDSSSSASESP 261
Query: 272 FTRKDDLNRHMRNHDGL---------KPFHCSVCFESFTQKALLNIHLR--IHT--NSKP 318
+ + + + P C SF++ + L HLR H+ + KP
Sbjct: 262 RSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKP 321
Query: 319 HAC--SICTESFSQKSNLYIHLKLQHGVNPFKCDVCPN------ETFEKETQLSLHMRTV 370
+C S+C + FS+ L H+ L ++P K + + + Q + +
Sbjct: 322 FSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDL 381
Query: 371 HGVKPFKCSM--CDEGFPKKSVLKEHLRVSHNVNP--FKCDICFKLFTKKSNLRTHIKTH 426
K + C F + S L H+ + P K C K F + NL H K H
Sbjct: 382 KNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIH 441
Query: 427 E 427
Sbjct: 442 T 442
Score = 48.2 bits (114), Expect = 9e-06
Identities = 53/338 (15%), Positives = 90/338 (26%), Gaps = 71/338 (21%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSD---LNRHSRIHNGIK 233
+P C C++SF++ +L H+R H G +P QC+ C + S L+RH R H+
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYS-GCDKSFSRPLELSRHLRTHHNNP 90
Query: 234 PFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKC---------FTRKDDLNRHMRN 284
L S + S + ++RN
Sbjct: 91 SDLNSKSLP--LSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRN 148
Query: 285 HD----GLKPFHCSVCFESFTQK------------ALLNIHLRIHTNSKPHACSICTESF 328
+ + L I + T+ + + S
Sbjct: 149 NPLPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSS 208
Query: 329 SQKSNLYIHLKLQHGVNPFKCDVC----------PNETFEKETQLSLHMRTVHG------ 372
+ L++ + + + + S
Sbjct: 209 YSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTA 268
Query: 373 ------------------VKPFKCSMCDEGFPKKSVLKEHLR----VSHNVNPFKCDI-- 408
P K C+ F + S L HLR ++ PF C
Sbjct: 269 SSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSL 328
Query: 409 CFKLFTKKSNLRTHIKTHEPIPCDKCPEIFEKKTDLQE 446
C KLF++ L+ HI H I K +
Sbjct: 329 CGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPL 366
Score = 46.2 bits (109), Expect = 3e-05
Identities = 38/178 (21%), Positives = 59/178 (33%), Gaps = 17/178 (9%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAH----EGIKPFQC--SVCSESFTQRSNLNIHLRIHD 202
C+ +F+ RH+R+ E +KPF C S+C + F++ L H+ +H
Sbjct: 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHT 347
Query: 203 GIRPFQC--NVCYICFTNKSDLNRHSRIH-----NGIKPFLCSMCAKCFSRKDDLNR-HM 254
I P + F+ + + K + + K D N
Sbjct: 348 SISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLH 407
Query: 255 KIHEGSKRYLCTMCPKC---FTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIH 309
I S R P C F R +L H + H P CS+ L N
Sbjct: 408 IITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLDLSNHG 465
Score = 45.8 bits (108), Expect = 5e-05
Identities = 49/240 (20%), Positives = 70/240 (29%), Gaps = 43/240 (17%)
Query: 190 QRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGI-KPFLCSMCAKCFSRKD 248
S+L+ + ++ + S S G P C FSR
Sbjct: 244 SPSSLSSSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSS 303
Query: 249 DLNRHM--KIH--EGSKRYLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQ 302
L RH+ H E K + C C K F+R D L RH+ H + P + S
Sbjct: 304 PLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKF 363
Query: 303 KALLNIHLR-------IHTNSKPHAC--SICTESFSQKSNLYIHLKLQHGVNPFKCDVCP 353
LLN N K + C +F + SNL +H + H
Sbjct: 364 SPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLH-IITHLSFRPYN---- 418
Query: 354 NETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLF 413
K C + F + L H ++ N P C I
Sbjct: 419 ----------------------CKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFR 456
Score = 38.9 bits (90), Expect = 0.008
Identities = 41/177 (23%), Positives = 61/177 (34%), Gaps = 18/177 (10%)
Query: 94 SFTCSQCPKTFVDKWHLNRHLKSHS----ENKVFRC--EQCRFDFYVKREYNRHMKIHDG 147
QC +F L RHL+S + K F C C F RH+ +H
Sbjct: 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTS 348
Query: 148 VKVFLC--SVCSKTFTDKVKFNRHMRAH-----EGIKPFQCSV--CSESFTQRSNLNIHL 198
+ S F+ + + K + C +F + SNL++H+
Sbjct: 349 ISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHI 408
Query: 199 RIH--DGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRH 253
H + C F +L H +IH P LCS+ F R DL+ H
Sbjct: 409 ITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKS-FRRDLDLSNH 464
>gnl|CDD|180421 PRK06141, PRK06141, ornithine cyclodeaminase; Validated.
Length = 314
Score = 54.5 bits (132), Expect = 6e-08
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 484 RIPVEIKSLVEKLTSEGVPAVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHI 543
R P + ++L +L ++G + E A R ADI+ AT S+ P+++ EWLK H+
Sbjct: 158 RDPAKAEALAAELRAQG-FDAEVVTDLEAAVRQADIISCATLSTEPLVRGEWLKPG-THL 215
Query: 544 NAVGAGLNHH---SELDAAIYSHSSIFFDSEAAA 574
+ VG N E D +S++ D+ A A
Sbjct: 216 DLVG---NFTPDMRECDDEAIRRASVYVDTRAGA 246
>gnl|CDD|132037 TIGR02992, ectoine_eutC, ectoine utilization protein EutC. Members
of this protein family are EutA, a predicted
arylmalonate decarboxylase found in a conserved ectoine
utilization operon of species that include Sinorhizobium
meliloti 1021 (where it is known to be induced by
ectoine), Mesorhizobium loti, Silicibacter pomeroyi,
Agrobacterium tumefaciens, and Pseudomonas putida. This
family belongs to the ornithine
cyclodeaminase/mu-crystallin family (pfam02423).
Length = 326
Score = 51.0 bits (122), Expect = 7e-07
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 503 AVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYS 562
V A A ADI+VT T S P+L EWL + H+ A+G+ H +E+D A+ +
Sbjct: 181 DVTAATDPRAAMSGADIIVTTTPSETPILHAEWL-EPGQHVTAMGSDAEHKNEIDPAVIA 239
Query: 563 HSSIFF-DSEAAAR--GEL 578
+ + D + GEL
Sbjct: 240 KADHYVADRLSQTATLGEL 258
>gnl|CDD|235996 PRK07340, PRK07340, ornithine cyclodeaminase; Validated.
Length = 304
Score = 48.8 bits (117), Expect = 4e-06
Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 11/128 (8%)
Query: 492 LVEKLTSEGVPAVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLN 551
+ G A GE D++VTAT S PV Y + + AVGA
Sbjct: 166 FCAHARALGPTAEP--LDGEAIPEAVDLVVTATTSRTPV--YPEAARAGRLVVAVGAFTP 221
Query: 552 HHSELDAAIYSHSSIFFDSEAAAR---GELKGLYEQVPANMVGEVGGLIAANLTRDARYP 608
+EL S ++ D A AR G+L + V + V + + P
Sbjct: 222 DMAELAPRTVRGSRLYVDDPAGARHEAGDL--IQAGVDWSRVRPLADALRGAWPARGG-P 278
Query: 609 LTVFHSMG 616
+ +F S+G
Sbjct: 279 V-LFKSVG 285
>gnl|CDD|136070 PRK06823, PRK06823, ornithine cyclodeaminase; Validated.
Length = 315
Score = 48.6 bits (116), Expect = 5e-06
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 503 AVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYS 562
AV + A A+++VT T S P+L+ E + + HI AVGA ELDA + +
Sbjct: 179 AVNTTLDAAEVAHAANLIVTTTPSREPLLQAEDI-QPGTHITAVGADSPGKQELDAELVA 237
Query: 563 HSS-IFFDS--EAAARGELKGLYEQ--VPANMVGEVGGLIAANLT-RDARYPLTVFHSMG 616
+ I DS + GE+ ++ + + + E+G +A + R+ +T+ G
Sbjct: 238 RADKILVDSIAQCTDFGEVSHAFKAGLLAHHNLTELGLALAQGIPFRENDQQITLADLTG 297
Query: 617 V 617
V
Sbjct: 298 V 298
>gnl|CDD|180556 PRK06407, PRK06407, ornithine cyclodeaminase; Provisional.
Length = 301
Score = 44.9 bits (106), Expect = 7e-05
Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 490 KSLVEKLTSEGVPAVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAG 549
++ E+ + E ++ ++ E A RDAD + + T S P+ ++L + H+N G+
Sbjct: 156 RAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDTPIFNRKYL-GDEYHVNLAGSN 214
Query: 550 LNHHSELDAAIYSHSSIF----FDSEAAARGELKGLYEQVPANMVGEVGGLIAANLTRDA 605
+ E + ++ + + I + E+ Y + V E+ A N +
Sbjct: 215 YPNRREAEHSVLNDADIVVTEHMEQSLRESSEISE-YVKKGGKPV-ELKD-FAKNNGSYS 271
Query: 606 RYPLTVFHSMGV 617
TVF SMG+
Sbjct: 272 GLRRTVFKSMGI 283
>gnl|CDD|236064 PRK07589, PRK07589, ornithine cyclodeaminase; Validated.
Length = 346
Score = 43.7 bits (104), Expect = 2e-04
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 511 EDAARDADILVTAT----YSSVPVLKYEWLKKKDAHINAVGAGLNHHSELDAAIYSHSSI 566
+A ADI+ T T ++ +L + + + HINAVG +EL I + +
Sbjct: 188 AEAVEGADIITTVTADKTNAT--ILTDDMV-EPGMHINAVGGDCPGKTELHPDILRRARV 244
Query: 567 FFDSEAAAR--GELKGLYEQVPANM-VGEVGGLIAANLT--RDARYPLTVFHSMG 616
F + E R GE+ +Q+PA+ V E+ ++ A +T+F S+G
Sbjct: 245 FVEYEPQTRIEGEI----QQLPADFPVTELWRVLTGEAPGRESAD-QITLFDSVG 294
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 35.8 bits (83), Expect = 0.002
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 277 DLNRHMRNHDGLKPFHCSVCFESFTQ 302
+L RHMR H G KP+ C VC +SF+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 34.3 bits (79), Expect = 0.006
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 249 DLNRHMKIHEGSKRYLCTMCPKCFTR 274
+L RHM+ H G K Y C +C K F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 33.1 bits (76), Expect = 0.015
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 306 LNIHLRIHTNSKPHACSICTESFSQ 330
L H+R HT KP+ C +C +SFS
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 32.7 bits (75), Expect = 0.020
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 166 FNRHMRAHEGIKPFQCSVCSESFTQ 190
RHMR H G KP++C VC +SF+
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 32.0 bits (73), Expect = 0.034
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 137 EYNRHMKIHDGVKVFLCSVCSKTFT 161
RHM+ H G K + C VC K+F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 31.6 bits (72), Expect = 0.046
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 221 DLNRHSRIHNGIKPFLCSMCAKCFSR 246
+L RH R H G KP+ C +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 31.2 bits (71), Expect = 0.077
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 363 LSLHMRTVHGVKPFKCSMCDEGF 385
L HMRT G KP+KC +C + F
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSF 24
Score = 30.8 bits (70), Expect = 0.12
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 109 HLNRHLKSHSENKVFRCEQCRFDF 132
+L RH+++H+ K ++C C F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSF 24
Score = 29.7 bits (67), Expect = 0.24
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 193 NLNIHLRIHDGIRPFQCNVCYICFTN 218
NL H+R H G +P++C VC F++
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 27.7 bits (62), Expect = 1.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 391 LKEHLRVSHNVNPFKCDICFKLFT 414
L+ H+R P+KC +C K F+
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFS 25
>gnl|CDD|188459 TIGR03944, dehyd_SbnB_fam, 2,3-diaminopropionate biosynthesis
protein SbnB. Members of this protein family are
probable NAD-dependent dehydrogenases related to the
alanine dehydrogenase of Archaeoglobus fulgidus (see
TIGR02371, PDB structure 1OMO and PMID:15313611) and
more distantly to ornithine cyclodeaminase. Members
include the staphylobactin biosynthesis protein SbnB and
tend to occur in contexts suggesting non-ribosomal
peptide synthesis, always adjacent to (occasionally
fused with) a pyridoxal phosphate-dependent enzyme,
SbnA. The pair appears to provide 2,3-diaminopropionate
for biosynthesis of siderophores or other secondary
metabolites [Cellular processes, Biosynthesis of natural
products].
Length = 327
Score = 38.7 bits (91), Expect = 0.006
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 486 PVEIKSLVEKLTSEGVPAVQAYEHGEDAARDADILVTATYSSVP-VLKYEWLKK 538
P ++ + G V E A R AD++VTAT + P + W +
Sbjct: 168 PARAEAFAARCQELGPGKVTVAASAEAALRQADLVVTATVAGTPYIDDPAWFQP 221
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 36.0 bits (83), Expect = 0.013
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 395 LRVSHNVNPFKCDICFKLFTKKSNLRTHIK-THEPIPCDKCPEIFEKKTDLQEHVDKCHN 453
L S V+P+ C +C F+ +L+ HI+ T C C + F +HV K HN
Sbjct: 65 LLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRNTDSTLDHVCKKHN 124
Query: 454 L 454
+
Sbjct: 125 I 125
Score = 32.2 bits (73), Expect = 0.25
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 232 IKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHM 282
+ P++C +C FS L +H++ E SK +C +C K F D H+
Sbjct: 71 VSPYVCPLCLMPFSSSVSLKQHIRYTEHSK--VCPVCGKEFRNTDSTLDHV 119
Score = 32.2 bits (73), Expect = 0.29
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 369 TVHGVKPFKCSMCDEGFPKKSVLKEHLR-VSHNVNPFKCDICFKLFTKKSNLRTHI-KTH 426
T V P+ C +C F LK+H+R H+ C +C K F + H+ K H
Sbjct: 67 TSKAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSK---VCPVCGKEFRNTDSTLDHVCKKH 123
Score = 28.7 bits (64), Expect = 4.1
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 290 PFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGV 344
P+ C +C F+ L H+R +SK C +C + F + H+ +H +
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRYTEHSK--VCPVCGKEFRNTDSTLDHVCKKHNI 125
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 32.3 bits (74), Expect = 0.027
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 265 CTMCPKCFTRKDDLNRHMRNH 285
C C K F+RK +L RH+R H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 31.2 bits (71), Expect = 0.081
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 237 CSMCAKCFSRKDDLNRHMKIH 257
C C K FSRK +L RH++ H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 30.4 bits (69), Expect = 0.13
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 405 KCDICFKLFTKKSNLRTHIKTH 426
KC C K F++KSNL+ H++TH
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 30.4 bits (69), Expect = 0.13
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 180 QCSVCSESFTQRSNLNIHLRIH 201
+C C +SF+++SNL HLR H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 29.6 bits (67), Expect = 0.23
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 96 TCSQCPKTFVDKWHLNRHLKSH 117
C C K+F K +L RHL++H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 29.2 bits (66), Expect = 0.39
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 153 CSVCSKTFTDKVKFNRHMRAH 173
C C K+F+ K RH+R H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 28.9 bits (65), Expect = 0.41
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 58 KCNICPKRYARKNRLTNHLRTH 79
KC C K ++RK+ L HLRTH
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 28.9 bits (65), Expect = 0.54
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 208 QCNVCYICFTNKSDLNRHSRIH 229
+C C F+ KS+L RH R H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 26.9 bits (60), Expect = 2.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 293 CSVCFESFTQKALLNIHLRIH 313
C C +SF++K+ L HLR H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 25.8 bits (57), Expect = 6.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 321 CSICTESFSQKSNLYIHLK 339
C C +SFS+KSNL HL+
Sbjct: 2 CPDCGKSFSRKSNLKRHLR 20
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 31.3 bits (71), Expect = 0.067
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
Y C C K F K L HMR H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 30.5 bits (69), Expect = 0.13
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSH 117
+ C +C K F K L H+++H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 30.1 bits (68), Expect = 0.16
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 179 FQCSVCSESFTQRSNLNIHLRIH 201
++C C + F +S L H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 30.1 bits (68), Expect = 0.17
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
+ C C K F K L HM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 29.4 bits (66), Expect = 0.30
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 151 FLCSVCSKTFTDKVKFNRHMRAH 173
+ C C K F K HMR H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 29.0 bits (65), Expect = 0.46
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 57 FKCNICPKRYARKNRLTNHLRTH 79
++C C K + K+ L H+RTH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 28.6 bits (64), Expect = 0.62
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 404 FKCDICFKLFTKKSNLRTHIKTH 426
++C C K+F KS LR H++TH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 28.2 bits (63), Expect = 0.85
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIH 229
++C C F +KS L H R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 28.2 bits (63), Expect = 0.86
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 123 FRCEQCRFDFYVKREYNRHMKIH 145
+RC +C F K HM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.0 bits (60), Expect = 2.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 291 FHCSVCFESFTQKALLNIHLRIH 313
+ C C + F K+ L H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.5 bits (56), Expect = 7.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 376 FKCSMCDEGFPKKSVLKEHLRV 397
++C C + F KS L+EH+R
Sbjct: 1 YRCPECGKVFKSKSALREHMRT 22
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 33.1 bits (76), Expect = 0.15
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 27 EESASEDSDDEEDEDFENDENSSGKKMVK 55
EE E+ D+E+D++ E++E S K VK
Sbjct: 118 EEDEEEEDDEEDDDEDESEEEESPVKKVK 146
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 34.2 bits (79), Expect = 0.21
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 12 DANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVKKFK 58
+ ++++ + E+ ++ S E+ +++ED D E+DE ++ KK K
Sbjct: 335 EEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKK 381
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The
domain is found in the primary vegetative sigma factor.
The function of this domain is unclear and can be
removed without loss of function.
Length = 211
Score = 33.3 bits (77), Expect = 0.23
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 10 YVDANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSS 49
++D N + + E ED +D++D+D + DE+
Sbjct: 29 FIDPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDE 68
Score = 30.6 bits (70), Expect = 2.0
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 12 DANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSS 49
A ES+ E+ + +D D++EDED E + +
Sbjct: 40 TAAAIESELDEE---DLEDDDDDDEDEDEDDEEEADLG 74
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 29.5 bits (66), Expect = 0.26
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
+ C +C K F+ KD L RH+R H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 29.5 bits (66), Expect = 0.32
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSH 117
F C C K+F K L RHL+ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 28.0 bits (62), Expect = 0.90
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 151 FLCSVCSKTFTDKVKFNRHMRAH 173
F C +C K+F+ K RH+R H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 28.0 bits (62), Expect = 1.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
F C +C K FS KD L RH++ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 27.2 bits (60), Expect = 1.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 404 FKCDICFKLFTKKSNLRTHIKTH 426
FKC +C K F+ K L+ H++ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 27.2 bits (60), Expect = 1.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 57 FKCNICPKRYARKNRLTNHLRTH 79
FKC +C K ++ K+ L HLR H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 25.7 bits (56), Expect = 7.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 179 FQCSVCSESFTQRSNLNIHLRIH 201
F+C +C +SF+ + L HLR H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 33.7 bits (77), Expect = 0.30
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 15 EEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMV 54
EEES+ ++ EESA +DSDDEE+ED ++++ S M+
Sbjct: 172 EEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGML 211
>gnl|CDD|177288 PHA00616, PHA00616, hypothetical protein.
Length = 44
Score = 29.3 bits (66), Expect = 0.42
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 376 FKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLF 413
++C C F KK + EHL H N + + F
Sbjct: 2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYFYIYF 39
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 33.2 bits (77), Expect = 0.42
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 10 YVDANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVKKFK 58
+VD N EE E DDE++E+ E++ + S +
Sbjct: 173 FVDPNAEEDPAHV----GSELEELDDDEDEEEEEDENDDSLAADESELP 217
Score = 29.4 bits (67), Expect = 6.1
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 2 DVMSM---MGKYVDANEEESKDIEKLVIEESASEDSDDEEDEDFE 43
D+++M MG V ++ D L+ E A +D++ +E+
Sbjct: 47 DIIAMLNDMGIQVVEEAPDADD--LLLAENEADAQTDEDAEEEAA 89
>gnl|CDD|198065 smart00997, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD
binding domain.
Length = 162
Score = 31.7 bits (73), Expect = 0.50
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 6/28 (21%)
Query: 503 AVQAYEHG------EDAARDADILVTAT 524
A++A G E+AA+ ADI VTAT
Sbjct: 59 ALEAAMDGFEVMKMEEAAKRADIFVTAT 86
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 32.4 bits (73), Expect = 0.64
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 9 KYVDANEEESKDIEKLVIEESASEDSDDEEDEDFE-------NDENSSGKKMVKKF 57
K V ++E + E E E D DE E N+EN +++
Sbjct: 287 KEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADE 342
>gnl|CDD|153123 cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein
family. Nodulin-21_like_1: This is a family of
proteins closely related to nodulin-21, a plant
nodule-specific protein that may be involved in
symbiotic nitrogen fixation. This family is also
related to CCC1, a yeast vacuole transmembrane protein
that functions as an iron and manganese transporter. .
Length = 218
Score = 31.8 bits (73), Expect = 0.66
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 4 MSM-MGKYVDANEEESKDIEKLVIEESASEDSDDEEDE 40
+SM G+YV + + +D EK I + E ++D E E
Sbjct: 52 LSMAAGEYVSVSSQ--RDTEKADIAKERRELAEDPEAE 87
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 31.6 bits (72), Expect = 0.85
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 13 ANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVKKFK 58
N+EE K E+ + E ++ E+ E+ + K K K
Sbjct: 22 ENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLK 67
>gnl|CDD|235738 PRK06199, PRK06199, ornithine cyclodeaminase; Validated.
Length = 379
Score = 32.0 bits (73), Expect = 0.98
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 504 VQAYEHGEDAARDADILVTAT------YSSVPVLKYEWLK 537
V+ + E+ R +DI+ S+ P +K EW+K
Sbjct: 211 VEVVDSIEEVVRGSDIVTYCNSGETGDPSTYPYVKREWVK 250
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 31.3 bits (71), Expect = 1.1
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 9 KYVDANEEESKDIEKLVIEESASEDSDDEEDEDFENDE 46
K + E+ + ++ EE E+ +DE+ +D ++D+
Sbjct: 159 KLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDD 196
Score = 28.6 bits (64), Expect = 8.8
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 12 DANEEESKDIEKLVIEESASEDSDDEEDEDFENDEN 47
D +EE+ KD E+ EE ED DD++D D ++D N
Sbjct: 167 DVDEEDEKDEEEEEEEEEEDEDFDDDDD-DDDDDYN 201
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 31.7 bits (72), Expect = 1.2
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 9 KYVDANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVKK 56
K V EEE + EK EE + D ++E DE+ E +E K VK+
Sbjct: 33 KEVPDEEEEEEKEEKKE-EEEKTTDKEEEVDEEEEKEEKKKKTKKVKE 79
>gnl|CDD|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic
N-terminal. This is the very acidic N-terminal region
of the early transcription elongation factor Spt5. The
Spt5-Spt4 complex regulates early transcription
elongation by RNA polymerase II and has an imputed role
in pre-mRNA processing via its physical association
with mRNA capping enzymes. The actual function of this
N-terminal domain is not known although it is
dispensable for binding to Spt4.
Length = 92
Score = 29.7 bits (67), Expect = 1.2
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 26 IEESASEDSDDEEDEDFENDENSSGKKM 53
++ A D ++EE+E+ E+D +
Sbjct: 2 LDTEAEVDDEEEEEEEEEDDLEDLSDED 29
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 31.8 bits (72), Expect = 1.3
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 14 NEEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVK 55
++E++ + E+ ++ESA E DD++D D+E+ SG+ V
Sbjct: 286 DDEDAIETEEDDVDESAIE--DDDDDSDWEDSVEESGRSSVD 325
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 31.5 bits (71), Expect = 1.5
Identities = 11/35 (31%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Query: 12 DANEEESKDIEKLVIEESASEDSDDEEDEDFENDE 46
+ ++E S+D+ + +ES ++ SD+E+ ED++ E
Sbjct: 956 EESDESSEDLSE---DESENDSSDEEDGEDWDELE 987
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 31.4 bits (71), Expect = 1.6
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 12 DANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVKK 56
D +E+E + IE ES S+ D EEDE ++ E + G + K
Sbjct: 659 DDDEDECEAIED-SESESESDGEDGEEDEQEDDAEANEGVVPIDK 702
>gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and
catalytic domains. S-adenosyl-L-homocysteine hydrolase
(SAHH, AdoHycase) catalyzes the hydrolysis of
S-adenosyl-L-homocysteine (AdoHyc) to form adenosine
(Ado) and homocysteine (Hcy). The equilibrium lies far
on the side of AdoHyc synthesis, but in nature the
removal of Ado and Hyc is sufficiently fast, so that the
net reaction is in the direction of hydrolysis. Since
AdoHyc is a potent inhibitor of S-adenosyl-L-methionine
dependent methyltransferases, AdoHycase plays a critical
role in the modulation of the activity of various
methyltransferases. The enzyme forms homotetramers, with
each monomer binding one molecule of NAD+.
Length = 402
Score = 31.3 bits (72), Expect = 1.7
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 6/28 (21%)
Query: 503 AVQAYEHG------EDAARDADILVTAT 524
A+QA G E+AA+ DI VTAT
Sbjct: 231 ALQAAMDGFEVMPMEEAAKIGDIFVTAT 258
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for
cell viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 31.2 bits (71), Expect = 1.7
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 8 GKYVDANEEE-SKDIEKLVIEESASEDSD-DEEDEDFENDENSSGKKMVKKF 57
G + D EE ++I K + SE+SD +E+DE+ +ND++ K V++F
Sbjct: 44 GSFRDLTEESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEF 95
>gnl|CDD|202452 pfam02892, zf-BED, BED zinc finger.
Length = 43
Score = 27.2 bits (61), Expect = 3.1
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 55 KKFKCNICPKRYARK---NRLTNHLRT 78
K +C C K + + L HL
Sbjct: 14 TKARCKYCGKILSGGGGTSNLKRHLVR 40
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 30.3 bits (68), Expect = 3.1
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 16/99 (16%)
Query: 12 DANEEESK-------DIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVKKFKCNICPK 64
N+ E + K IE+ + +EE + E + GKK+ K
Sbjct: 293 SGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKL---------KK 343
Query: 65 RYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKT 103
+KN L S D +G + + +
Sbjct: 344 LKGKKNGLDKDDSDSGDDSDDSDIDGEDSVSLVTAKKQK 382
>gnl|CDD|182033 PRK09697, PRK09697, protein secretion protein GspB; Provisional.
Length = 139
Score = 29.3 bits (65), Expect = 3.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 15 EEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVKK 56
E ++ E V E+A S+DEE+ E+DE + ++ VK
Sbjct: 91 ESVEEEDEPGVAVENAPSSSEDEENTVEESDEKAGLRERVKN 132
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 30.3 bits (68), Expect = 3.4
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 14 NEEESKDIEKLVIEESASE--DSDDEEDEDFENDE 46
N+ E+K EK V S+ DS++EE+E+ E +E
Sbjct: 841 NQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEE 875
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 29.3 bits (66), Expect = 3.8
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 10 YVDANEEESKD---IEKLVIEESASEDSDDEEDEDFENDEN 47
D N++E +D I +++IE+ ++ DE+D++ E DE
Sbjct: 135 LDDENDDEDEDDDEIVEILIEDDEVDE--DEDDDEDEEDEE 173
>gnl|CDD|215376 PLN02699, PLN02699, Bifunctional molybdopterin
adenylyltransferase/molybdopterin molybdenumtransferase.
Length = 659
Score = 30.2 bits (68), Expect = 3.8
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 11/42 (26%)
Query: 402 NPFKCDICFKLF-----------TKKSNLRTHIKTHEPIPCD 432
NP C +CF LF + LR + EPI D
Sbjct: 315 NPVSCLVCFNLFVVPAIRYLAGWSNPHLLRVQARLREPIKLD 356
>gnl|CDD|215888 pfam00384, Molybdopterin, Molybdopterin oxidoreductase.
Length = 358
Score = 30.1 bits (68), Expect = 4.1
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 8/60 (13%)
Query: 505 QAYEH-GEDAARDADILVTATYSSVPVLKYEWLKKKDAHINA---VGAGLNHHSELDAAI 560
A EH G D + + + + LK + KD VGAG+ ++ +A
Sbjct: 151 YADEHLGIKPGTDLALALAGAHVFIKELKKD----KDFAPKPIIIVGAGVLQRADGEAIF 206
>gnl|CDD|150045 pfam09237, GAGA, GAGA factor. Members of this family bind to a
5'-GAGAG-3' DNA consensus binding site, and contain a
Cys2-His2 zinc finger core as well as an N-terminal
extension containing two highly basic regions. The zinc
finger core binds in the DNA major groove and recognises
the first three GAG bases of the consensus in a manner
similar to that seen in other classical zinc finger-DNA
complexes. The second basic region forms a helix that
interacts in the major groove recognising the last G of
the consensus, while the first basic region wraps around
the DNA in the minor groove and recognises the A in the
fourth position of the consensus sequence.
Length = 54
Score = 27.2 bits (60), Expect = 4.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P C IC Q NL HL+L+H P
Sbjct: 23 QPATCPICQAVIRQSRNLRRHLELRHFKKP 52
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or
more acidic residues. The function of members of this
family is unknown.
Length = 104
Score = 28.0 bits (63), Expect = 4.9
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 15 EEESKDIEKLVIEESASEDSDDEEDEDFENDE 46
E+ +K E E+ D DD++D+D + +
Sbjct: 51 EDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPD 82
>gnl|CDD|234592 PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.
Length = 423
Score = 29.8 bits (68), Expect = 5.1
Identities = 10/47 (21%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 492 LVEKLTSEGVPAVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKK 538
L E+ E +P + +A +ADI++++T + P++ +++
Sbjct: 222 LAEEFGGEAIP----LDELPEALAEADIVISSTGAPHPIIGKGMVER 264
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 29.3 bits (65), Expect = 6.2
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 15 EEESKDIEKL-------VIEESASEDSDDEEDEDFENDENSSGKKMVKKFK 58
EEE +D+E++ V+EE +D D E+D++ E+D ++ ++
Sbjct: 109 EEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGEYI 159
>gnl|CDD|217956 pfam04194, PDCD2_C, Programmed cell death protein 2, C-terminal
putative domain.
Length = 165
Score = 28.5 bits (64), Expect = 6.3
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 12 DANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVKKFKCNI--CPK---RY 66
+ E E E E E++E E+++ S K +KFK + P+ RY
Sbjct: 24 EPEEREIDAFE----ELEKEGGGGKEDEETDESEKAKSDDKTFQKFKKRVARNPEQVLRY 79
Query: 67 ARK 69
R
Sbjct: 80 ERG 82
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 28.9 bits (65), Expect = 6.4
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 12 DANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKK 52
A EE K+ EK E + SED +D+ D + E++E+ +
Sbjct: 59 TAEIEEVKEEEK---EAANSEDKEDKGDAEKEDEESEEENE 96
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 29.3 bits (66), Expect = 6.7
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 9 KYVDANEEESKDI----EKLVIE----ESASEDSDDEEDEDFENDENSSGK 51
K+ A E E I L IE E E+ +DEE+E+ E+++ K
Sbjct: 360 KWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSK 410
>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger.
Length = 27
Score = 25.6 bits (57), Expect = 7.2
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 150 VFLCSVCSKTFTDKVKFNRHMRAH 173
V C VC KTF+ H ++H
Sbjct: 1 VHTCGVCGKTFSSLQALGGHKKSH 24
Score = 25.3 bits (56), Expect = 8.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 404 FKCDICFKLFTKKSNLRTHIKTH 426
C +C K F+ L H K+H
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSH 24
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 28.9 bits (65), Expect = 7.3
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 13 ANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKK 52
A EEE +D + S SED D+E++++ E +++ G K
Sbjct: 286 AEEEEEED------DYSESEDEDEEDEDEEEEEDDDEGDK 319
>gnl|CDD|165133 PHA02768, PHA02768, hypothetical protein; Provisional.
Length = 55
Score = 26.5 bits (58), Expect = 7.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 57 FKCNICPKRYARKNRLTNHLRTH 79
++C IC + Y ++ + HLR H
Sbjct: 6 YECPICGEIYIKRKSMITHLRKH 28
>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2. This
domain family is found in eukaryotes, and is typically
between 138 and 153 amino acids in length. The family
is found in association with pfam00493. Mini-chromosome
maintenance (MCM) proteins are essential for DNA
replication. These proteins use ATPase activity to
perform this function.
Length = 145
Score = 28.1 bits (63), Expect = 7.8
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 12 DANEEESKDIEKLVIEESASEDSDDEE--DEDFEND 45
D EE DI+ ++E A E+ D E+ ++ E D
Sbjct: 5 DEEEELEDDID--DLDEEAEEEEDGEDLFGDNMERD 38
>gnl|CDD|214746 smart00614, ZnF_BED, BED zinc finger. DNA-binding domain in
chromatin-boundary-element-binding proteins and
transposases.
Length = 50
Score = 26.2 bits (58), Expect = 8.1
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 58 KCNICPKRYARKNRL-TNHLRTH 79
KC C K+ +R ++ T++LR H
Sbjct: 20 KCKYCGKKLSRSSKGGTSNLRRH 42
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM).
This family consists of several Plasmodium falciparum
SPAM (secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the
alanine heptad-repeat domain. Heptad repeats in which
the a and d position contain hydrophobic residues
generate amphipathic alpha-helices which give rise to
helical bundles or coiled-coil structures in proteins.
SPAM is an example of a P. falciparum antigen in which
a repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 28.3 bits (63), Expect = 8.3
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 15 EEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKK 52
EEE ++ E + EE ED ++EE+++ +N + +K
Sbjct: 59 EEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEK 96
>gnl|CDD|235488 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase;
Provisional.
Length = 425
Score = 28.9 bits (66), Expect = 8.5
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
Query: 503 AVQAYEHG------EDAARDADILVTAT 524
A+QA G E+AA DI VTAT
Sbjct: 248 ALQAAMDGFRVMTMEEAAELGDIFVTAT 275
>gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme
metabolism].
Length = 420
Score = 28.8 bits (65), Expect = 8.8
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 511 EDAARDADILVTATYSSVPVLKYEWLKK-KDAHI 543
E+AA+ DI VTAT + V++ E +K KD I
Sbjct: 259 EEAAKTGDIFVTAT-GNKDVIRKEHFEKMKDGAI 291
>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF)
Superfamily; Provisional.
Length = 844
Score = 29.1 bits (65), Expect = 9.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 24 LVIEESASEDSDDEEDEDFENDENSSG 50
L +S +D DDE D +E+DE+ +G
Sbjct: 80 LNQRKSLDDDDDDEFDFLYEDDEDDAG 106
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.419
Gapped
Lambda K H
0.267 0.0864 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,857,957
Number of extensions: 2800324
Number of successful extensions: 4321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4060
Number of HSP's successfully gapped: 210
Length of query: 617
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 514
Effective length of database: 6,369,140
Effective search space: 3273737960
Effective search space used: 3273737960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.4 bits)