RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13389
(617 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 191 bits (488), Expect = 1e-57
Identities = 66/179 (36%), Positives = 95/179 (53%)
Query: 159 TFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTN 218
+ G KP+ C C +SF++ +L H R H G +P++C C F++
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 219 KSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDL 278
K DL RH R H G KP+ C C K FS++ +L H + H G K Y C C K F++ L
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 279 NRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIH 337
H R H G KP+ C C +SF+++ L+ H R HT KP+ C C +SFS++ L +H
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 186 bits (476), Expect = 5e-56
Identities = 67/179 (37%), Positives = 97/179 (54%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLR 199
+ G K + C C K+F+ H R H G KP++C C +SF+ + +L H R
Sbjct: 11 AQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR 70
Query: 200 IHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEG 259
H G +P++C C F+ +++L H R H G KP+ C C K FS+ L H + H G
Sbjct: 71 THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG 130
Query: 260 SKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
K Y C C K F+R+D+L+ H R H G KP+ C C +SF+++ LN+H R HT K
Sbjct: 131 EKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 179 bits (458), Expect = 2e-53
Identities = 72/189 (38%), Positives = 98/189 (51%), Gaps = 1/189 (0%)
Query: 187 SFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSR 246
S S+ + G +P+ C C F+ L H R H G KP+ C C K FS
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 247 KDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALL 306
K DL RH + H G K Y C C K F+++ +L H R H G KP+ C C +SF+Q A L
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 307 NIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLH 366
H R HT KP+ C C +SFS++ NL+ H + G P+KC C ++F + L++H
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC-GKSFSRRDALNVH 180
Query: 367 MRTVHGVKP 375
RT G K
Sbjct: 181 QRTHTGKKT 189
Score = 161 bits (409), Expect = 2e-46
Identities = 64/194 (32%), Positives = 96/194 (49%), Gaps = 10/194 (5%)
Query: 68 RKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQ 127
+ GE + C +C K+F HL H ++H+ K ++C +
Sbjct: 5 GSSSSVAQAALEP----------GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPE 54
Query: 128 CRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSES 187
C F K++ RH + H G K + C C K+F+ + H R H G KP+ C C +S
Sbjct: 55 CGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKS 114
Query: 188 FTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRK 247
F+Q ++L H R H G +P++C C F+ + +L+ H R H G KP+ C C K FSR+
Sbjct: 115 FSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRR 174
Query: 248 DDLNRHMKIHEGSK 261
D LN H + H G K
Sbjct: 175 DALNVHQRTHTGKK 188
Score = 144 bits (367), Expect = 2e-40
Identities = 75/235 (31%), Positives = 98/235 (41%), Gaps = 60/235 (25%)
Query: 216 FTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRK 275
S + + G KP+ C C K FSR D L H + H G K Y C C K F+ K
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 276 DDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLY 335
DL RH R H G KP+ C C +SF+Q+A L H R HT KP+AC C +SFSQ ++L
Sbjct: 63 KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR 122
Query: 336 IHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHL 395
H RT G KP+KC C
Sbjct: 123 A-----------------------------HQRTHTGEKPYKCPECG------------- 140
Query: 396 RVSHNVNPFKCDICFKLFTKKSNLRTHIKTH---EPIPCDKCPEIFEKKTDLQEH 447
K F+++ NL TH +TH +P C +C + F ++ L H
Sbjct: 141 ---------------KSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 144 bits (366), Expect = 2e-40
Identities = 61/180 (33%), Positives = 90/180 (50%), Gaps = 10/180 (5%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHL 114
K + C C K ++R + L H RTH GE + C +C K+F DK L RH
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHT----------GEKPYKCPECGKSFSDKKDLTRHQ 69
Query: 115 KSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHE 174
++H+ K ++C +C F + H + H G K + C C K+F+ H R H
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
G KP++C C +SF++ NL+ H R H G +P++C C F+ + LN H R H G K
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 86.7 bits (216), Expect = 6e-20
Identities = 42/152 (27%), Positives = 62/152 (40%), Gaps = 32/152 (21%)
Query: 299 SFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFE 358
S + + KP+AC C +SFS+ +L
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHL------------------------ 37
Query: 359 KETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSN 418
+ H RT G KP+KC C + F K L H R P+KC C K F++++N
Sbjct: 38 -----AEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRAN 92
Query: 419 LRTHIKTH---EPIPCDKCPEIFEKKTDLQEH 447
LR H +TH +P C +C + F + L+ H
Sbjct: 93 LRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 154 bits (391), Expect = 6e-44
Identities = 47/186 (25%), Positives = 70/186 (37%), Gaps = 12/186 (6%)
Query: 169 HMRAHEGIKPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCN--VCYICFTNKSDLNR 224
K + CS C ++ + L HL H G +PF C C FT+ L R
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 225 HSRIHNGIKPFLCS--MCAKCFSRKDDLNRHMKIHEGSKR--YLCTM--CPKCFTRKDDL 278
HS H G K F C C F+ K ++ +H K Y+C C K F + + L
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQL 122
Query: 279 NRHMRNHDGLKPFHCS--VCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYI 336
H +H P+ C C + F+ + L H ++H C+ +
Sbjct: 123 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLK 182
Query: 337 HLKLQH 342
H+ H
Sbjct: 183 HVAECH 188
Score = 133 bits (336), Expect = 3e-36
Identities = 48/220 (21%), Positives = 63/220 (28%), Gaps = 46/220 (20%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCS--QCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFD 131
+ CS C + W L HL H+ K F C++
Sbjct: 2 GEKALP----------VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEG-- 49
Query: 132 FYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS--VCSESFT 189
C K FT RH H G K F C C FT
Sbjct: 50 ------------------------CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFT 85
Query: 190 QRSNLNIHLRIHDG--IRPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCS--MCAKC 243
++N+ H I + C+ C F + L H H P+ C C K
Sbjct: 86 TKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKR 145
Query: 244 FSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMR 283
FS L RH K+H G C +H+
Sbjct: 146 FSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 185
Score = 117 bits (296), Expect = 1e-30
Identities = 52/242 (21%), Positives = 77/242 (31%), Gaps = 68/242 (28%)
Query: 225 HSRIHNGIKPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCT--MCPKCFTRKDDLNR 280
+ K ++CS C +++ L H+ H G K + C C K FT L R
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 281 HMRNHDGLKPFHCS--VCFESFTQKALLNIHLRIHTNSK--PHACSI--CTESFSQKSNL 334
H H G K F C C FT KA + H N K + C C ++F + + L
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQL 122
Query: 335 YIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEH 394
+H + P++C
Sbjct: 123 KVH-----------------------------QFSHTQQLPYEC---------------- 137
Query: 395 LRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH---EPIPCDKCPEIFEKKTDLQEHVDKC 451
+ C K F+ S L+ H K H D C + + T +HV +C
Sbjct: 138 ----------PHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAEC 187
Query: 452 HN 453
H
Sbjct: 188 HQ 189
Score = 115 bits (290), Expect = 6e-30
Identities = 49/215 (22%), Positives = 74/215 (34%), Gaps = 47/215 (21%)
Query: 55 KKFKCNI--CPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQ--CPKTFVDKWHL 110
K++ C+ C Y + +L HL H GE F C + C K F HL
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHT----------GEKPFPCKEEGCEKGFTSLHHL 60
Query: 111 NRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHM 170
RH +H+ K F C+ C FT K +H
Sbjct: 61 TRHSLTHTGEKNFTCDSDG--------------------------CDLRFTTKANMKKHF 94
Query: 171 RAHEGIK--PFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCN--VCYICFTNKSDLNR 224
IK + C C ++F + + L +H H P++C C F+ S L R
Sbjct: 95 NRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKR 154
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMK-IHE 258
H ++H G C+ +H+ H+
Sbjct: 155 HEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 134 bits (340), Expect = 2e-37
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 172 AHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSR---I 228
G +C C + F + L +H R H G +PF+C C C+ K +L H +
Sbjct: 1 GSSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 229 HNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHM-RNHDG 287
+ + F CS+C + F R+ +L HM H G Y C+ C + F +K DL HM + H G
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Query: 288 LK 289
Sbjct: 121 PS 122
Score = 129 bits (327), Expect = 1e-35
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 229 HNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRN---H 285
+G C C K F K L H + H G K + C C KC+ RK++L H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 286 DGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIH 337
+ F CSVC E+F ++ L +H+ HT P+ CS C++ F QK +L H
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 109 bits (275), Expect = 1e-28
Identities = 37/121 (30%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Query: 117 HSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRA---H 173
S + C C F K H + H G K F C C K + K H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 174 EGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRH-SRIHNGI 232
+ F CSVC E+F +R L +H+ H G P++C+ C F K DL H ++H+G
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP 121
Query: 233 K 233
Sbjct: 122 S 122
Score = 82.2 bits (204), Expect = 6e-19
Identities = 37/127 (29%), Positives = 50/127 (39%), Gaps = 14/127 (11%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHL 114
+C C K++ K L H R H GE F C +C K + K +L H
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHT----------GEKPFECPKCGKCYFRKENLLEHE 55
Query: 115 KS---HSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHM- 170
+ +VF C C+ F + E HM H G + CS CS+ F K HM
Sbjct: 56 ARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Query: 171 RAHEGIK 177
+ H G
Sbjct: 116 KLHSGPS 122
Score = 76.0 bits (188), Expect = 8e-17
Identities = 38/147 (25%), Positives = 56/147 (38%), Gaps = 37/147 (25%)
Query: 313 HTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHG 372
+ S C C + F K L +H R G
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYL-----------------------------KVHNRKHTG 32
Query: 373 VKPFKCSMCDEGFPKKSVLKEHLRVSHNVN----PFKCDICFKLFTKKSNLRTHIKTH-- 426
KPF+C C + + +K L EH + +N F C +C + F ++ LR H+ +H
Sbjct: 33 EKPFECPKCGKCYFRKENLLEHEA-RNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG 91
Query: 427 -EPIPCDKCPEIFEKKTDLQEHVDKCH 452
P C C + F +K DLQ H+ K H
Sbjct: 92 EMPYKCSSCSQQFMQKKDLQSHMIKLH 118
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 133 bits (336), Expect = 1e-36
Identities = 37/152 (24%), Positives = 51/152 (33%), Gaps = 13/152 (8%)
Query: 156 CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQ------- 208
+ + E C +F+ L H+ + P Q
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 209 --CNVCYICFTNKSDLNRHSRIHNGIKPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYL 264
C F K L H R+H G KPF C C K F+R ++L H + H G K +
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 265 CTM--CPKCFTRKDDLNRHMRNHDGLKPFHCS 294
C C + F D +HM H K S
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 125 bits (316), Expect = 6e-34
Identities = 36/140 (25%), Positives = 52/140 (37%), Gaps = 13/140 (9%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQ---------CSVCSESFTQ 190
I + C +TF+ + H+ P Q C +SF
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKA 74
Query: 191 RSNLNIHLRIHDGIRPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSM--CAKCFSR 246
+ L H+R+H G +PF C C F +L H R H G KPF C C + F+
Sbjct: 75 KYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFAN 134
Query: 247 KDDLNRHMKIHEGSKRYLCT 266
D +HM +H K +
Sbjct: 135 SSDRKKHMHVHTSDKSGPSS 154
Score = 118 bits (298), Expect = 2e-31
Identities = 41/181 (22%), Positives = 56/181 (30%), Gaps = 33/181 (18%)
Query: 62 CPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENK 121
+ + E + S C +TF L H+
Sbjct: 3 SGSSGQPIKQELSCKWIDE----------AQLSRPKKSCDRTFSTMHELVTHVTMEHVGG 52
Query: 122 VFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQC 181
+ + C K+F K K H+R H G KPF C
Sbjct: 53 PEQNNHVCY-------------------WEECPREGKSFKAKYKLVNHIRVHTGEKPFPC 93
Query: 182 SV--CSESFTQRSNLNIHLRIHDGIRPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLC 237
C + F + NL IH R H G +PF+C C F N SD +H +H K
Sbjct: 94 PFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Query: 238 S 238
S
Sbjct: 154 S 154
Score = 112 bits (282), Expect = 3e-29
Identities = 37/155 (23%), Positives = 54/155 (34%), Gaps = 17/155 (10%)
Query: 241 AKCFSRKDDLNRHMK---IHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFH----- 292
S + + + I E C + F+ +L H+ P
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 293 ----CSVCFESFTQKALLNIHLRIHTNSKPHACSI--CTESFSQKSNLYIHLKLQHGVNP 346
C +SF K L H+R+HT KP C C + F++ NL IH + G P
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP 120
Query: 347 FKCDV--CPNETFEKETQLSLHMRTVHGVKPFKCS 379
FKC+ C + F + HM K S
Sbjct: 121 FKCEFEGC-DRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 55.8 bits (135), Expect = 2e-09
Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 14/107 (13%)
Query: 355 ETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFK--------- 405
+ + Q CD F L H+ + H P +
Sbjct: 5 SSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE 64
Query: 406 CDICFKLFTKKSNLRTHIKTH---EPIPCDK--CPEIFEKKTDLQEH 447
C K F K L HI+ H +P PC C +IF + +L+ H
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH 111
Score = 37.7 bits (88), Expect = 0.003
Identities = 10/79 (12%), Positives = 17/79 (21%), Gaps = 12/79 (15%)
Query: 381 CDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH------------EP 428
+ C + F+ L TH+
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 429 IPCDKCPEIFEKKTDLQEH 447
C + + F+ K L H
Sbjct: 63 EECPREGKSFKAKYKLVNH 81
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 128 bits (323), Expect = 8e-35
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 15/153 (9%)
Query: 177 KPFQCSVCSESFTQRSNLNIHL---RIHDGIRPFQCNVCYI-----CFTNKSDLNRHSRI 228
+ CS+ F + L H+ IH + F C+ F + L H R
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 229 HNGIKPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCT--MCPKCFTRKDDLNRHM-R 283
H G KP C+ C K +SR ++L H++ H G K Y+C C K F+ D +H R
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR 121
Query: 284 NHDGLKPFHCSV--CFESFTQKALLNIHLRIHT 314
H KP+ C + C + +T + L H++
Sbjct: 122 THSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 125 bits (317), Expect = 6e-34
Identities = 49/175 (28%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKS---HSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVF 151
C + F + L H+ S H E K F C
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG---------------------- 41
Query: 152 LCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQC 209
CS + F + HMR H G KP +C+ C +S+++ NL HLR H G +P+ C
Sbjct: 42 -CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMC 100
Query: 210 N--VCYICFTNKSDLNRH-SRIHNGIKPFLCSM--CAKCFSRKDDLNRHMKIHEG 259
C F+N SD +H +R H+ KP++C + C K ++ L +H+K G
Sbjct: 101 EHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 111 bits (280), Expect = 7e-29
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 16/155 (10%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMK---IHEGSKRYLCTMC-----PKCFTRKDDLNRHMRN 284
C++ F ++ L H+ IH K ++C + F + L HMR
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 285 HDGLKPFHCSV--CFESFTQKALLNIHLRIHTNSKPHAC--SICTESFSQKSNLYIHLKL 340
H G KP C+ C +S+++ L HLR HT KP+ C C+++FS S+ H
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR 121
Query: 341 QH-GVNPFKCDV--CPNETFEKETQLSLHMRTVHG 372
H P+ C + C + + + L H++TVHG
Sbjct: 122 THSNEKPYVCKLPGC-TKRYTDPSSLRKHVKTVHG 155
Score = 46.8 bits (112), Expect = 2e-06
Identities = 28/127 (22%), Positives = 42/127 (33%), Gaps = 43/127 (33%)
Query: 55 KKFKCNI--CPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQ--CPKTFVDKWHL 110
K KC C K Y+R L HLR+H GE + C C K F +
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHT----------GEKPYMCEHEGCSKAFSNASDR 115
Query: 111 NRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSV--CSKTFTDKVKFNR 168
+H + H K ++C + C+K +TD +
Sbjct: 116 AKH---------------------------QNRTHSNEKPYVCKLPGCTKRYTDPSSLRK 148
Query: 169 HMRAHEG 175
H++ G
Sbjct: 149 HVKTVHG 155
Score = 31.4 bits (72), Expect = 0.35
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 11/57 (19%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH-----------EPIPCDKCPEIFEKKTDLQEHV 448
+ D C + F + L HI + C + F+ + L H+
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM 59
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 117 bits (296), Expect = 1e-31
Identities = 41/106 (38%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 156 CSKTFTDKVKFNRHMRAHEGIKPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCY 213
C+K + H R H G KP+QC C F++ L H R H G++PFQC C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 214 ICFTNKSDLNRHSRIHNGIKPFLCSM--CAKCFSRKDDLNRHMKIH 257
F+ L H+R H G KPF C C K F+R D+L RH +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 114 bits (287), Expect = 3e-30
Identities = 45/115 (39%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 205 RPFQCN--VCYICFTNKSDLNRHSRIHNGIKPFLCSM--CAKCFSRKDDLNRHMKIHEGS 260
RPF C C + S L HSR H G KP+ C C + FSR D L RH + H G
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIH 313
K + C C + F+R D L H R H G KPF C C + F + L H +H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 113 bits (286), Expect = 4e-30
Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 233 KPFLCS--MCAKCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNRHMRNHDGL 288
+PF+C+ C K + + L H + H G K Y C C + F+R D L RH R H G+
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSI--CTESFSQKSNLYIH 337
KPF C C F++ L H R HT KP +C C + F++ L H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 98.7 bits (247), Expect = 7e-25
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 121 KVFRCEQ--CRFDFYVKREYNRHMKIHDGVKVFLCSV--CSKTFTDKVKFNRHMRAHEGI 176
+ F C C ++ H + H G K + C C + F+ + RH R H G+
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNV--CYICFTNKSDLNRHSRIH 229
KPFQC C F++ +L H R H G +PF C C F +L RH +H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 87.2 bits (217), Expect = 9e-21
Identities = 39/144 (27%), Positives = 51/144 (35%), Gaps = 35/144 (24%)
Query: 289 KPFHCS--VCFESFTQKALLNIHLRIHTNSKPHACSI--CTESFSQKSNLYIHLKLQHGV 344
+PF C+ C + + + + L +H R HT KP+ C C FS+ L
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQL---------- 54
Query: 345 NPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPF 404
H R GVKPF+C C F + LK H R PF
Sbjct: 55 -------------------KRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPF 95
Query: 405 KCDI--CFKLFTKKSNLRTHIKTH 426
C C K F + L H H
Sbjct: 96 SCRWPSCQKKFARSDELVRHHNMH 119
Score = 84.1 bits (209), Expect = 9e-20
Identities = 39/153 (25%), Positives = 50/153 (32%), Gaps = 44/153 (28%)
Query: 55 KKFKCN--ICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCS--QCPKTFVDKWHL 110
+ F C C KRY + + L H R H GE + C C + F L
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHT----------GEKPYQCDFKDCERRFSRSDQL 54
Query: 111 NRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHM 170
RH + H GVK F C C + F+ H
Sbjct: 55 ----------------------------KRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT 86
Query: 171 RAHEGIKPFQCSV--CSESFTQRSNLNIHLRIH 201
R H G KPF C C + F + L H +H
Sbjct: 87 RTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 116 bits (292), Expect = 5e-31
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ C C+K F D +H+ H G + C+ C ++F + S L H +H G +P
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 207 FQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSM--CAKCFSRKDDLNRHMKIHEGSKR 262
FQC C F+ +L H RIH G +P++C C K F++ +L H+ H +K
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Query: 263 Y 263
Sbjct: 123 N 123
Score = 114 bits (287), Expect = 3e-30
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 205 RPFQC--NVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
R C C F + S + +H H G + +C+ C K F L RH +H G K
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIHTNSKP 318
+ CT C K F+ +L H+R H G +P+ C C + F Q L H+ H +K
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Query: 319 H 319
+
Sbjct: 123 N 123
Score = 105 bits (264), Expect = 4e-27
Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 119 ENKVFRC--EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGI 176
E + C + C F +H+ H G +V +C+ C K F + K RH H G
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGE 60
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNV--CYICFTNKSDLNRHSRIHNGI 232
KPFQC+ C + F+ NL H+RIH G RP+ C C F ++L H H
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120
Query: 233 KPF 235
K
Sbjct: 121 KNN 123
Score = 101 bits (254), Expect = 9e-26
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 95 FTCSQ--CPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFL 152
C C K F D + +HL +H +V C +C F + RH +H G K F
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQ 64
Query: 153 CSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQ 208
C+ C K F+ H+R H G +P+ C C++ F Q +NL H+ H + Q
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 94.9 bits (237), Expect = 2e-23
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 261 KRYLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
+ C C K F + +H+ H G + C+ C ++F + + L H +HT KP
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 319 HACSI--CTESFSQKSNLYIHLKLQHGVNPFKCDV--CPNETFEKETQLSLHMRTVHGVK 374
C+ C + FS NL H+++ G P+ C C N+ F + T L H+ T K
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGC-NKKFAQSTNLKSHILTHAKAK 121
Query: 375 PFK 377
+
Sbjct: 122 NNQ 124
Score = 63.7 bits (156), Expect = 1e-12
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 346 PFKCDV--CPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNP 403
C C + F + + H+ T HG + C+ C + F + S LK H V P
Sbjct: 5 TIACPHKGC-TKMFRDNSAMRKHLHT-HGPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 404 FKCDI--CFKLFTKKSNLRTHIKTH---EPIPC--DKCPEIFEKKTDLQEH 447
F+C C K F+ NLRTH++ H P C D C + F + T+L+ H
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 114 bits (289), Expect = 1e-30
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 170 MRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIH 229
G K + C C +SFT +S + H+ +H G+RP+ C VC F K L H +IH
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLN 279
GIKP+ C++CAK F +D +RH + +K Y + T +
Sbjct: 61 TGIKPYECNICAKRFMWRDSFHRH--VTSCTKSYEAAKAEQNTTEASGPS 108
Score = 112 bits (284), Expect = 5e-30
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 226 SRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNH 285
S +G K + C C K F+ K +RHM +H G + Y C +C K F K L HM+ H
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 286 DGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNL 334
G+KP+ C++C + F + H + + +K + + ++ ++ S
Sbjct: 61 TGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 109 bits (275), Expect = 9e-29
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 142 MKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIH 201
G K++ C C K+FT K + +RHM H G++P+ C VC + F + +L H++IH
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 202 DGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLN 251
GI+P++CN+C F + H + + K + + + + +
Sbjct: 61 TGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 105 bits (265), Expect = 2e-27
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 199 RIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHE 258
G + + C C FT+KS +RH +H G++P+ C +C K F K L HMKIH
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 259 GSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLN 307
G K Y C +C K F +D H K + + ++ T+ + +
Sbjct: 62 GIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 93.3 bits (233), Expect = 4e-23
Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 32/138 (23%)
Query: 254 MKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIH 313
G K Y C C K FT K +RHM H GL+P+ C VC + F K L H++IH
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 314 TNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGV 373
T KP+ C+IC + F + S H
Sbjct: 61 TGIKPYECNICAKRFMWRD-------------------------------SFHRHVTSCT 89
Query: 374 KPFKCSMCDEGFPKKSVL 391
K ++ + ++ + S
Sbjct: 90 KSYEAAKAEQNTTEASGP 107
Score = 88.7 bits (221), Expect = 2e-21
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 115 KSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHE 174
S +K++ C+ C F K + +RHM +H G++ + C VC K F K HM+ H
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLN 223
GIKP++C++C++ F R + H + + ++ T S +
Sbjct: 62 GIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 79.0 bits (196), Expect = 4e-18
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKV 150
G+ + C QC K+F K +RH+ H + + C C F +K HMKIH G+K
Sbjct: 7 GDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 151 FLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLN 195
+ C++C+K F + F H K ++ + ++ T+ S +
Sbjct: 66 YECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 64.4 bits (158), Expect = 6e-13
Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 31/135 (22%)
Query: 311 RIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTV 370
+ K + C C +SF+ KS HM
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQR-----------------------------DRHMSMH 32
Query: 371 HGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTHE-PI 429
G++P+ C +C + F K L H+++ + P++C+IC K F + + H+ +
Sbjct: 33 LGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSY 92
Query: 430 PCDKCPEIFEKKTDL 444
K + + +
Sbjct: 93 EAAKAEQNTTEASGP 107
Score = 46.3 bits (111), Expect = 1e-06
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHL 114
+ + C +C K++ K+ L H++ H G + C+ C K F+ + +RH+
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKIHT----------GIKPYECNICAKRFMWRDSFHRHV 85
Query: 115 KSHSENKVFRCEQC 128
S K + +
Sbjct: 86 --TSCTKSYEAAKA 97
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 114 bits (287), Expect = 2e-30
Identities = 29/104 (27%), Positives = 44/104 (42%)
Query: 219 KSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDL 278
S + K F+C C + F++ +L H + H + Y C +C K F R+D L
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 279 NRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
H H KPF C C + F Q L +H +H + +
Sbjct: 62 RDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 114 bits (287), Expect = 2e-30
Identities = 31/100 (31%), Positives = 43/100 (43%)
Query: 167 NRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHS 226
+ + K F C C FT+ NL IH R H RP+ C++C+ F + L H
Sbjct: 6 SGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65
Query: 227 RIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
IH+ KPF C C K F + L H +H +
Sbjct: 66 YIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 111 bits (281), Expect = 1e-29
Identities = 29/103 (28%), Positives = 39/103 (37%)
Query: 192 SNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLN 251
S + + F C C FT +L H R H +P+ C +C K F R+D L
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR 62
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
H IH K + C C K F + L H H +
Sbjct: 63 DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 103 bits (260), Expect = 8e-27
Identities = 25/100 (25%), Positives = 40/100 (40%)
Query: 139 NRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHL 198
+ K F+C C + FT H R H +P+ C +C ++F ++ +L H
Sbjct: 6 SGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65
Query: 199 RIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
IH +PF+C C F L H +H +
Sbjct: 66 YIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 98.7 bits (247), Expect = 5e-25
Identities = 26/101 (25%), Positives = 44/101 (43%)
Query: 249 DLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNI 308
+ + K ++C C + FT+ +L H R H +P+ C +C ++F ++ L
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
H IH+ KP C C + F Q L +H L +
Sbjct: 64 HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 92.1 bits (230), Expect = 1e-22
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 277 DLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYI 336
+ K F C C FT+ L IH R HT+ +P+ C IC ++F ++ +L
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 337 HLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCS 379
H + PFKC C + F + L++H +
Sbjct: 64 HRYIHSKEKPFKCQEC-GKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 83.6 bits (208), Expect = 1e-19
Identities = 23/139 (16%), Positives = 38/139 (27%), Gaps = 38/139 (27%)
Query: 72 LTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFD 131
+ + + F C C + F ++L
Sbjct: 5 SSGGRLPSK----------TKKEFICKFCGRHFTKSYNL--------------------- 33
Query: 132 FYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQR 191
H + H + + C +C K F + H H KPF+C C + F Q
Sbjct: 34 -------LIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQS 86
Query: 192 SNLNIHLRIHDGIRPFQCN 210
L +H +H
Sbjct: 87 RTLAVHKTLHMQTSSPTAA 105
Score = 70.2 bits (173), Expect = 5e-15
Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 29/121 (23%)
Query: 306 LNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSL 365
+ K C C F++ NL +
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHFTKSYNL-----------------------------LI 35
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKT 425
H RT +P+ C +C + F ++ L++H + PFKC C K F + L H
Sbjct: 36 HERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTL 95
Query: 426 H 426
H
Sbjct: 96 H 96
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 108 bits (273), Expect = 1e-28
Identities = 28/93 (30%), Positives = 45/93 (48%)
Query: 173 HEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGI 232
P +C VC + F+++ L H+R H G++P++C C + S LN+H RIH+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLC 265
+PF C +C L H++ H G
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 105 bits (264), Expect = 2e-27
Identities = 34/93 (36%), Positives = 44/93 (47%)
Query: 229 HNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGL 288
P C +C KCFSRKD L HM+ H G K Y C C LN+H+R H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHAC 321
+PF C +C + + L +HLR HT +
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 104 bits (263), Expect = 3e-27
Identities = 29/93 (31%), Positives = 42/93 (45%)
Query: 201 HDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGS 260
P +C VC CF+ K L H R H G+KP+ C C + LN+H++IH
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHC 293
+ + C +CP L H+R+H G
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 103 bits (259), Expect = 1e-26
Identities = 36/93 (38%), Positives = 44/93 (47%)
Query: 145 HDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGI 204
C VC K F+ K K HMR H G+KP++C C + S+LN HLRIH
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLC 237
RPF+C +C N S L H R H G
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 97.9 bits (245), Expect = 7e-25
Identities = 35/93 (37%), Positives = 49/93 (52%)
Query: 257 HEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNS 316
S + C +C KCF+RKD L HMR H G+KP+ C C + + LN HLRIH++
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
+P C IC + S L +HL+ G +
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 87.5 bits (218), Expect = 3e-21
Identities = 30/94 (31%), Positives = 42/94 (44%)
Query: 116 SHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEG 175
S + +CE C F K + HM+ H GVK + C C D N+H+R H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 176 IKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQC 209
+PF+C +C + S L +HLR H G
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 86.7 bits (216), Expect = 6e-21
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 285 HDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGV 344
P C VC + F++K L H+R HT KP+ C C + + S+L HL++
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 345 NPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKC 378
PFKC +CP +QL++H+R+ G
Sbjct: 63 RPFKCQICP-YASRNSSQLTVHLRSHTGDSGPSS 95
Score = 71.7 bits (177), Expect = 1e-15
Identities = 35/114 (30%), Positives = 46/114 (40%), Gaps = 29/114 (25%)
Query: 313 HTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHG 372
+S PH C +C + FS+K L HMR G
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKL-----------------------------KTHMRCHTG 33
Query: 373 VKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH 426
VKP+KC CD S L +HLR+ + PFKC IC S L H+++H
Sbjct: 34 VKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 63.2 bits (155), Expect = 1e-12
Identities = 26/127 (20%), Positives = 42/127 (33%), Gaps = 38/127 (29%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHL 114
KC +C K ++RK++L H+R H G + C C D L
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHT----------GVKPYKCKTCDYAAADSSSL---- 52
Query: 115 KSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHE 174
N+H++IH + F C +C + + H+R+H
Sbjct: 53 ------------------------NKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHT 88
Query: 175 GIKPFQC 181
G
Sbjct: 89 GDSGPSS 95
Score = 59.7 bits (146), Expect = 2e-11
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 372 GVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH---EP 428
P KC +C + F +K LK H+R V P+KC C S+L H++ H P
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 429 IPCDKCPEIFEKKTDLQEH 447
C CP + L H
Sbjct: 65 FKCQICPYASRNSSQLTVH 83
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 104 bits (262), Expect = 3e-27
Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C V C F+Q +L H+RIH G +PFQC +C F+ L H R H G KP
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 235 FLCSMCAKCFSRKDDLNRHMKIHEGSK 261
F C +C + F+R D+ RH KIH K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 97.2 bits (243), Expect = 1e-24
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+P+ C + C + FS+ L RH++IH G K + C +C + F+R D L H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSK 317
F C +C F + H +IH K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 95.2 bits (238), Expect = 5e-24
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
RP+ C V C F+ L RH RIH G KPF C +C + FSR D L H++ H G K
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 263 YLCTMCPKCFTRKDDLNRHMRNHDGLK 289
+ C +C + F R D+ RH + H K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 92.5 bits (231), Expect = 4e-23
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 156 CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYIC 215
C + F+ RH+R H G KPFQC +C +F++ +L H+R H G +PF C++C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 216 FTNKSDLNRHSRIHNGIK 233
F + RH++IH K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 86.0 bits (214), Expect = 8e-21
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 261 KRYLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
+ Y C + C + F++ L RH+R H G KPF C +C +F++ L H+R HT KP
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 319 HACSICTESFSQKSNLYIHLK 339
AC IC F++ H K
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
Score = 81.7 bits (203), Expect = 3e-19
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 121 KVFRC--EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
+ + C E C F RH++IH G K F C +C + F+ H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 179 FQCSVCSESFTQRSNLNIHLRIHDG 203
F C +C F + H +IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLR 87
Score = 74.0 bits (183), Expect = 2e-16
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C V C F+Q L H+RIHT KP C IC +FS+ +L H++ G P
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 347 FKCDVCPNETFEKETQLSLHMRT 369
F CD+C F + + H +
Sbjct: 63 FACDIC-GRKFARSDERKRHTKI 84
Score = 67.1 bits (165), Expect = 4e-14
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 95 FTC--SQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFL 152
+ C C + F L RH++ H+ K F+C C +F H++ H G K F
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 153 CSVCSKTFTDKVKFNRHMRAHEGIK 177
C +C + F + RH + H K
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQK 89
Score = 64.4 bits (158), Expect = 3e-13
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 346 PFKCDV--CPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNP 403
P+ C V C + F + L+ H+R G KPF+C +C F + L H+R P
Sbjct: 4 PYACPVESC-DRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 404 FKCDICFKLFTKKSNLRTHIKTH 426
F CDIC + F + + H K H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 62.9 bits (154), Expect = 1e-12
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 55 KKFKCNI--CPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNR 112
+ + C + C +R+++ LT H+R H G+ F C C + F HL
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHT----------GQKPFQCRICMRNFSRSDHLTT 52
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVK 149
H+++H+ K F C+ C F E RH KIH K
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 104 bits (261), Expect = 4e-27
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 172 AHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNG 231
G C +C + F +LN H H G +P+ C VC + F K ++ H R H+G
Sbjct: 1 GSSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 232 --IKPFLCSMCAKCFSRKDDLNRHMK-IHEGSK 261
KP++C C K FSR D LN H+K +H G
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 96.8 bits (242), Expect = 2e-24
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 229 HNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDG- 287
+G C +C K F LNRH H G K Y C +C F RKD ++ H+R+HDG
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 288 -LKPFHCSVCFESFTQKALLNIHL-RIHT 314
KP+ C C + F++ LN H+ ++H+
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 91.4 bits (228), Expect = 2e-22
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 145 HDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDG- 203
G C +C K F D NRH +H G KP+ C VC F ++ ++ H+R HDG
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 204 -IRPFQCNVCYICFTNKSDLNRHS-RIHNGIK 233
+P+ C C F+ LN H ++H+G
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 73.7 bits (182), Expect = 2e-16
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 285 HDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHG- 343
G C +C + F LN H H+ KP++C +C F +K + H++ G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 344 -VNPFKCDVCPNETFEKETQLSLHMRTVH 371
P+ C C + F + L+ H++ VH
Sbjct: 62 VGKPYICQSC-GKGFSRPDHLNGHIKQVH 89
Score = 64.0 bits (157), Expect = 5e-13
Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 34/118 (28%)
Query: 313 HTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHG 372
+ S AC IC + F +L + H + G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHL-----------------------------NRHKLSHSG 32
Query: 373 VKPFKCSMCDEGFPKKSVLKEHLRVSH---NVNPFKCDICFKLFTKKSNLRTHIK-TH 426
KP+ C +C F +K + H+R H P+ C C K F++ +L HIK H
Sbjct: 33 EKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 61.4 bits (150), Expect = 5e-12
Identities = 27/150 (18%), Positives = 43/150 (28%), Gaps = 65/150 (43%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHL 114
C IC K + L H +H GE ++C C F K +
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHS----------GEKPYSCPVCGLRFKRKDRM---- 51
Query: 115 KSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHE 174
+ H++ HDG
Sbjct: 52 ------------------------SYHVRSHDG--------------------------S 61
Query: 175 GIKPFQCSVCSESFTQRSNLNIHL-RIHDG 203
KP+ C C + F++ +LN H+ ++H G
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 54.4 bits (132), Expect = 1e-09
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 372 GVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH----- 426
G C +C + F L H P+ C +C F +K + H+++H
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 427 EPIPCDKCPEIFEKKTDLQEHVDKCH 452
+P C C + F + L H+ + H
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVH 89
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 100 bits (252), Expect = 8e-26
Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 159 TFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNV--CYICF 216
+ R H P C++ +T+ S+L HLR H G +P++C C F
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 217 TNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHE 258
+L RH R H G KPF C +C + FSR D L HMK H+
Sbjct: 58 ARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 99.2 bits (248), Expect = 3e-25
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 187 SFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSM--CAKCF 244
S RIH P C +T S L H R H G KP+ C+ C F
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 245 SRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNH 285
+R D+L RH + H G+K + C +C + F+R D L HM+ H
Sbjct: 58 ARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 95.0 bits (237), Expect = 9e-24
Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 216 FTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFT 273
+ RIH P C K +++ L H++ H G K Y CT C F
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA 58
Query: 274 RKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTN 315
R D+L RH R H G KPF C VC SF++ L +H++ H N
Sbjct: 59 RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 84.6 bits (210), Expect = 4e-20
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 244 FSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSV--CFESFT 301
+IH C K +T+ L H+R H G KP+ C+ C F
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA 58
Query: 302 QKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLK 339
+ L H R HT +KP C +C SFS+ +L +H+K
Sbjct: 59 RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 70.3 bits (173), Expect = 4e-15
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 272 FTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSI--CTESFS 329
R H P C + +T+ + L HLR HT KP+ C+ C F+
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA 58
Query: 330 QKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRT 369
+ L H + G PF+C VC N +F + L+LHM+
Sbjct: 59 RSDELTRHYRKHTGAKPFQCGVC-NRSFSRSDHLALHMKR 97
Score = 65.0 bits (159), Expect = 3e-13
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 327 SFSQKSNLYIHLKLQHGVNPFKCDV--CPNETFEKETQLSLHMRTVHGVKPFKCSM--CD 382
S + CD C + + K + L H+RT G KP+KC+ CD
Sbjct: 2 SSGSSGPDLEKRR------IHYCDYPGC-TKVYTKSSHLKAHLRTHTGEKPYKCTWEGCD 54
Query: 383 EGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTHE 427
F + L H R PF+C +C + F++ +L H+K H+
Sbjct: 55 WRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 54.2 bits (131), Expect = 2e-09
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 16/110 (14%)
Query: 67 ARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC- 125
R H C K + HL HL++H+ K ++C
Sbjct: 4 GSSGPDLEKRRIH--------------YCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCT 49
Query: 126 -EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHE 174
E C + F E RH + H G K F C VC+++F+ HM+ H+
Sbjct: 50 WEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 53.8 bits (130), Expect = 2e-09
Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 14/104 (13%)
Query: 46 ENSSGKKMVKKFKCNI--CPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCS--QCP 101
+ + + C+ C K Y + + L HLRTH GE + C+ C
Sbjct: 5 SSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHT----------GEKPYKCTWEGCD 54
Query: 102 KTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
F L RH + H+ K F+C C F HMK H
Sbjct: 55 WRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 36.5 bits (85), Expect = 0.003
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 54 VKKFKCNICPKRYARKNRLTNHLRTHE 80
K F+C +C + ++R + L H++ H+
Sbjct: 73 AKPFQCGVCNRSFSRSDHLALHMKRHQ 99
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 99 bits (250), Expect = 1e-25
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 26/113 (23%)
Query: 173 HEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGI 232
+ C +++T+ S+L HLR H G +P+ C+
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDG------------------- 42
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNH 285
C F+R D+L RH + H G + + C C + F+R D L HM+ H
Sbjct: 43 -------CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 88.7 bits (221), Expect = 1e-21
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 229 HNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNRHMRNHD 286
+ C K +++ L H++ H G K Y C C F R D+L RH R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 287 GLKPFHCSVCFESFTQKALLNIHLRIH 313
G +PF C C +F++ L +H++ H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 84.1 bits (209), Expect = 5e-20
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 145 HDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSV--CSESFTQRSNLNIHLRIHD 202
+ C KT+T H+R H G KP+ C C F + L H R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 203 GIRPFQCNVCYICFTNKSDLNRHSRIH 229
G RPFQC C F+ L H + H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 81.8 bits (203), Expect = 3e-19
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 257 HEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIHT 314
+ C K +T+ L H+R H G KP+HC C F + L H R HT
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 315 NSKPHACSICTESFSQKSNLYIHLK 339
+P C C +FS+ +L +H+K
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 70.6 bits (174), Expect = 2e-15
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 117 HSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSV--CSKTFTDKVKFNRHMRAHE 174
+ C + H++ H G K + C C F + RH R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIH 201
G +PFQC C +F++ +L +H++ H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 66.0 bits (162), Expect = 9e-14
Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 31/115 (26%)
Query: 285 HDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSI--CTESFSQKSNLYIHLKLQH 342
+ C +++T+ + L HLR HT KP+ C C F++ L
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDEL-------- 53
Query: 343 GVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRV 397
+ H R G +PF+C CD F + L H++
Sbjct: 54 ---------------------TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 55.2 bits (134), Expect = 6e-10
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 51 KKMVKKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCS--QCPKTFVDKW 108
+ C K Y + + L HLRTH GE + C C F
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHT----------GEKPYHCDWDGCGWKFARSD 51
Query: 109 HLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
L RH + H+ ++ F+C++C F HMK H
Sbjct: 52 ELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 98.3 bits (246), Expect = 4e-25
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 176 IKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPF 235
+KPFQC +C +F++ +L H+R H G +PF C++C F + RH I I P
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPI 59
Query: 236 LCSMCAKCFSRKDDL---NRHMKIHEGSK 261
L + S+ L +K G +
Sbjct: 60 LEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 92.9 bits (232), Expect = 3e-23
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 232 IKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPF 291
+KPF C +C + FSR D L H++ H G K + C +C + F R D+ RH + P
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPI 59
Query: 292 HCSVCFESFTQKALL---NIHLRIHTNSK 317
E ++ L L+ +
Sbjct: 60 LEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 86.0 bits (214), Expect = 9e-21
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 148 VKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPF 207
+K F C +C + F+ H+R H G KPF C +C F + H I I P
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPI 59
Query: 208 QCNVCYICFTNKSDL---NRHSRIHNGIK 233
+ + L + G +
Sbjct: 60 LEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 76.8 bits (190), Expect = 2e-17
Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 30/107 (28%)
Query: 288 LKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPF 347
+KPF C +C +F++ L H+R HT KP AC IC F++
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR----------- 49
Query: 348 KCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEH 394
H + P +E K L+
Sbjct: 50 ------------------HRDI-QHILPILEDKVEELLSKNYHLENE 77
Score = 74.5 bits (184), Expect = 1e-16
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 121 KVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQ 180
K F+C C +F H++ H G K F C +C + F + RH I P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPIL 60
Query: 181 CSVCSESFTQRSNL---NIHLRIHDG 203
E ++ +L L+ G
Sbjct: 61 EDKVEELLSKNYHLENEVARLKKLVG 86
Score = 69.4 bits (171), Expect = 5e-15
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 344 VNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNP 403
+ PF+C +C F + L+ H+RT G KPF C +C F + K H + ++ P
Sbjct: 1 MKPFQCRIC-MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI-QHILP 58
Query: 404 FKCDICFKLFTKKSNLRTHI---KTH 426
D +L +K +L + K
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKL 84
Score = 65.6 bits (161), Expect = 1e-13
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 373 VKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH--EPIP 430
+KPF+C +C F + L H+R PF CDIC + F + + H PI
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPIL 60
Query: 431 CDKCPEIFEKKTDLQEHV 448
DK E+ K L+ V
Sbjct: 61 EDKVEELLSKNYHLENEV 78
Score = 64.4 bits (158), Expect = 4e-13
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 14/99 (14%)
Query: 54 VKKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRH 113
+K F+C IC + ++R + LT H+RTH GE F C C + F RH
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHT----------GEKPFACDICGRKFARSDERKRH 50
Query: 114 LKSHSENKVFRCEQCRFDFYVK---REYNRHMKIHDGVK 149
++ +K G +
Sbjct: 51 RDIQHI-LPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2i99_A MU-crystallin homolog; thyroid hormine binding protein,
oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Length = 312
Score = 102 bits (257), Expect = 3e-24
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 9/127 (7%)
Query: 492 LVEKLTSEGVPAVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLN 551
+ + E V+ ++A AD+++T T ++ P+L EW+ K AHINAVGA
Sbjct: 176 FADTVQGE----VRVCSSVQEAVAGADVIITVTLATEPILFGEWV-KPGAHINAVGASRP 230
Query: 552 HHSELDAAIYSHSSIFFDSEAAARGELKGLYEQVPANMVGEVGGLIAANLT-RDARYPLT 610
ELD + + ++ DS+ AA E G A + E+G +I + T
Sbjct: 231 DWRELDDELMKEAVLYVDSQEAALKES-GDVLLSGAEIFAELGEVIKGVKPAHCEK--TT 287
Query: 611 VFHSMGV 617
VF S+G+
Sbjct: 288 VFKSLGM 294
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 93.6 bits (234), Expect = 2e-23
Identities = 34/81 (41%), Positives = 46/81 (56%)
Query: 179 FQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
F C +C +SF + S L+ HL IH RP+ C C F KSD+ +H+ IH G KP C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 239 MCAKCFSRKDDLNRHMKIHEG 259
+C K FS+ +L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 86.7 bits (216), Expect = 4e-21
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 153 CSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVC 212
C +C K+F + H+ H +P+ C C + F Q+S++ H IH G +P +C VC
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 213 YICFTNKSDLNRHSRIHNG 231
F+ S+L HSR H G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 85.9 bits (214), Expect = 8e-21
Identities = 31/78 (39%), Positives = 43/78 (55%)
Query: 237 CSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVC 296
C +C K F R L+ H+ IH ++ Y C C K F +K D+ +H H G KP C VC
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 297 FESFTQKALLNIHLRIHT 314
++F+Q + L H R HT
Sbjct: 64 GKAFSQSSNLITHSRKHT 81
Score = 85.2 bits (212), Expect = 1e-20
Identities = 30/81 (37%), Positives = 43/81 (53%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
F C +C F S L+ H IH+ +P+ C C K F +K D+ +H IH G K + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 267 MCPKCFTRKDDLNRHMRNHDG 287
+C K F++ +L H R H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 82.5 bits (205), Expect = 1e-19
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 263 YLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ C +C K F R L+ H+ H +P+ C C + F QK+ + H IHT KPH C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 323 ICTESFSQKSNLYIH 337
+C ++FSQ SNL H
Sbjct: 62 VCGKAFSQSSNLITH 76
Score = 73.6 bits (182), Expect = 2e-16
Identities = 29/81 (35%), Positives = 39/81 (48%)
Query: 123 FRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
F C+ C F + H+ IH + + C C K F K +H H G KP +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 183 VCSESFTQRSNLNIHLRIHDG 203
VC ++F+Q SNL H R H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 56.3 bits (137), Expect = 2e-10
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 347 FKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
F C +C ++F++ + LS H+ +P+ C C + F +KS +K+H + P KC
Sbjct: 2 FDCKIC-GKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 407 DICFKLFTKKSNLRTHIKTH 426
+C K F++ SNL TH + H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 53.2 bits (129), Expect = 3e-09
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 10/91 (10%)
Query: 57 FKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKS 116
F C IC K + R + L+ HL H + C C K F K + +H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHS----------DTRPYPCQYCGKRFHQKSDMKKHTFI 51
Query: 117 HSENKVFRCEQCRFDFYVKREYNRHMKIHDG 147
H+ K +C+ C F H + H G
Sbjct: 52 HTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 53.2 bits (129), Expect = 3e-09
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 321 CSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSM 380
C IC +SF + S L HL + P+ C C + F +++ + H G KP KC +
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYC-GKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 381 CDEGFPKKSVLKEHLRV 397
C + F + S L H R
Sbjct: 63 CGKAFSQSSNLITHSRK 79
Score = 40.5 bits (96), Expect = 7e-05
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHL 114
+ + C C KR+ +K+ + H H GE C C K F +L H
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKHTFIHT----------GEKPHKCQVCGKAFSQSSNLITHS 77
Query: 115 KSH 117
+ H
Sbjct: 78 RKH 80
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 92.6 bits (231), Expect = 4e-23
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 166 FNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDG----IRPFQCNVCYICFTNKSD 221
R H G KP+ CS C ++F Q+ L++H + + F C+ C FT ++
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 222 LNRHSRIHNGIKPFLCSMCAKCF 244
+ RH+ G
Sbjct: 63 MARHADNCAGPDGVEGENSGPSS 85
Score = 92.2 bits (230), Expect = 5e-23
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 222 LNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEG----SKRYLCTMCPKCFTRKDD 277
R H G KP+ CS C K F +K L+ H K + ++C+ C K FTR++
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 278 LNRHMRNHDGLKPFHCSVCFESF 300
+ RH N G S
Sbjct: 63 MARHADNCAGPDGVEGENSGPSS 85
Score = 91.8 bits (229), Expect = 8e-23
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 193 NLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNG----IKPFLCSMCAKCFSRKD 248
+ R H G +P+ C+ C F K L+ H + ++ F+CS C K F+R++
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 249 DLNRHMKIHEGSKRYLCTMCPKCF 272
+ RH G
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 84.5 bits (210), Expect = 3e-20
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 250 LNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDG----LKPFHCSVCFESFTQKAL 305
+ H G K Y C+ C K F +K L+ H + + F CS C ++FT++
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 306 LNIHLRIHTNSKPHACSICTESF 328
+ H S
Sbjct: 63 MARHADNCAGPDGVEGENSGPSS 85
Score = 81.4 bits (202), Expect = 3e-19
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 139 NRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEG----IKPFQCSVCSESFTQRSNL 194
+ H G K + CS C KTF K + H + + F CS C ++FT+R+ +
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTM 63
Query: 195 NIHLRIHDGIRPFQCNVC 212
H G +
Sbjct: 64 ARHADNCAGPDGVEGENS 81
Score = 78.3 bits (194), Expect = 5e-18
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 278 LNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHT----NSKPHACSICTESFSQKSN 333
R H G KP+ CS C ++F QK LL++H + + CS C ++F++++
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 334 LYIHLKLQHGVNPFKCDVC 352
+ H G + + +
Sbjct: 63 MARHADNCAGPDGVEGENS 81
Score = 63.3 bits (155), Expect = 8e-13
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 109 HLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDG----VKVFLCSVCSKTFTDKV 164
++H+ K + C C F K+ + H K + F+CS C KTFT +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 165 KFNRHMRAHEGIKPFQCSVCSESF 188
RH G + S
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 60.2 bits (147), Expect = 9e-12
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 363 LSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRV----SHNVNPFKCDICFKLFTKKSN 418
RT G KP+ CS CD+ F +K +L H + + F C C K FT+++
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 419 LRTHIKTH---EPIPCDKC 434
+ H + + +
Sbjct: 63 MARHADNCAGPDGVEGENS 81
Score = 56.4 bits (137), Expect = 2e-10
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHL 114
K + C+ C K + +K L H + + + + F CS+C KTF + + RH
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA------FVCSKCGKTFTRRNTMARHA 67
Query: 115 KSHSENKVFRCEQC 128
+ + E
Sbjct: 68 DNCAGPDGVEGENS 81
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer,
rossmann-fold NAD domain, human MU crystallin homolog;
HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13
PDB: 1vll_A
Length = 322
Score = 96.9 bits (242), Expect = 3e-22
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 10/134 (7%)
Query: 490 KSLVEKLTSEGVPAVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAG 549
K V G+ A + A D+LVT T S PV+K EW+ ++ HINA+GA
Sbjct: 164 KKFVSYCEDRGISAS---VQPAEEASRCDVLVTTTPSRKPVVKAEWV-EEGTHINAIGAD 219
Query: 550 LNHHSELDAAIYSHSSIFFDSEAAAR--GELKGLYEQ---VPANMVGEVGGLIAANLT-R 603
ELD I + I D A+ GE+ + ++ +G +IA R
Sbjct: 220 GPGKQELDVEILKKAKIVVDDLEQAKHGGEINVAVSKGVIGVEDVHATIGEVIAGLKDGR 279
Query: 604 DARYPLTVFHSMGV 617
++ +T+F S G+
Sbjct: 280 ESDEEITIFDSTGL 293
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 88.7 bits (221), Expect = 8e-22
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 222 LNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIH--EGSKRYLCTMCPKCFTRKDDLN 279
R H+G KP+ C +C F++ + H+ E ++ C C RK DL
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 280 RHMRN-HDGLKPF 291
H+R H P
Sbjct: 63 VHLRKQHSYSGPS 75
Score = 86.8 bits (216), Expect = 4e-21
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 165 KFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDG--IRPFQCNVCYICFTNKSDL 222
R H G KP++C +C FTQ + +H+ + F C C KSDL
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 223 NRHSR-IHNGIKPF 235
H R H+ P
Sbjct: 62 GVHLRKQHSYSGPS 75
Score = 85.3 bits (212), Expect = 1e-20
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 278 LNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHT--NSKPHACSICTESFSQKSNLY 335
R H G KP+ C +C FTQ + +H+ N C C ++KS+L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 336 IHLKLQH 342
+HL+ QH
Sbjct: 63 VHLRKQH 69
Score = 78.7 bits (195), Expect = 2e-18
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 139 NRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAH--EGIKPFQCSVCSESFTQRSNLNI 196
+ H G K + C +C FT H+ E + F C C ++S+L +
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63
Query: 197 HLR-IHDGIRPF 207
HLR H P
Sbjct: 64 HLRKQHSYSGPS 75
Score = 73.3 bits (181), Expect = 2e-16
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 306 LNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVN--PFKCDVCPNETFEKETQL 363
R H+ KP+ C IC F+Q + +H+ +H N F C C + +++ L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHC-DTVIARKSDL 61
Query: 364 SLHMRTVH-GVKPF 376
+H+R H P
Sbjct: 62 GVHLRKQHSYSGPS 75
Score = 66.8 bits (164), Expect = 3e-14
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 363 LSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSH--NVNPFKCDICFKLFTKKSNLR 420
RT G KP++C +C F + +K H+ H NV F C C + +KS+L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 421 THIKTH 426
H++
Sbjct: 63 VHLRKQ 68
Score = 56.0 bits (136), Expect = 2e-10
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 391 LKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH-----EPIPCDKCPEIFEKKTDLQ 445
R P++C IC FT+ ++ HI C C + +K+DL
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 446 EHVDKCH 452
H+ K H
Sbjct: 63 VHLRKQH 69
Score = 50.6 bits (122), Expect = 2e-08
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 12/65 (18%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGS--FTCSQCPKTFVDKWHLNR 112
K ++C IC R+ + + H+ E F C C K L
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKH----------TENVAKFHCPHCDTVIARKSDLGV 63
Query: 113 HLKSH 117
HL+
Sbjct: 64 HLRKQ 68
Score = 34.4 bits (80), Expect = 0.009
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 54 VKKFKCNICPKRYARKNRLTNHLRTHEAG 82
V KF C C ARK+ L HLR +
Sbjct: 43 VAKFHCPHCDTVIARKSDLGVHLRKQHSY 71
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds
L-proline, 2 bundle, beta barrel, rossmann fold, lyase;
HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP:
c.2.1.13 PDB: 1u7h_A*
Length = 350
Score = 95.9 bits (239), Expect = 1e-21
Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 5/131 (3%)
Query: 490 KSLVEKLTSEGVPAVQAYEHGEDAARDADILVTAT--YSSVPVLKYEWLKKKDAHINAVG 547
L+ L ++ +A + DI+ T T + ++ + L+ H+NAVG
Sbjct: 168 AKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKAYATIITPDMLEP-GMHLNAVG 226
Query: 548 AGLNHHSELDAAIYSHSSIFFDSEAAARGELKGLYEQVPANMVGEVGGLIAANLT-RDAR 606
+EL A + ++ +F + E R E + + V ++ ++ R +
Sbjct: 227 GDCPGKTELHADVLRNARVFVEYEPQTRIE-GEIQQLPADFPVVDLWRVLRGETEGRQSD 285
Query: 607 YPLTVFHSMGV 617
+TVF S+G
Sbjct: 286 SQVTVFDSVGF 296
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis
TOH structural genomics, PSI-2, protein structure
initiative; 1.70A {Bordetella pertussis}
Length = 313
Score = 90.8 bits (226), Expect = 3e-20
Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 10/143 (6%)
Query: 483 VRI--PVEIKSLVEKLTSEGVPAVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKD 540
+ + P ++E++ + D A ADI+VTAT S+ P+ + L +
Sbjct: 149 ILVHDPYASPEILERIGRRCGVPARMAA-PADIAAQADIVVTATRSTTPLFAGQAL-RAG 206
Query: 541 AHINAVGAGLNHHSELDAAIYSHSS-IFFDSEAAAR---GELKGLYEQ-VPANMVGEVGG 595
A + A+G+ L H ELD + + + G+L V E+
Sbjct: 207 AFVGAIGSSLPHTRELDDEALRRARAVVVEWREQTLSEAGDLVLAAPDTGLDAKVVELAD 266
Query: 596 LIAANLT-RDARYPLTVFHSMGV 617
++A R A + ++ S+GV
Sbjct: 267 VLAGRAAARQADEDIVIYKSVGV 289
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 84.1 bits (209), Expect = 3e-20
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 172 AHEGIKPFQCSV--CSESFTQRSNLNIHLRI-HDGIRPFQCN--VCYICFTNKSDLNRHS 226
G C C F+ R LN H + H + F C C F K L H
Sbjct: 1 GSSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Query: 227 RIHNGIKPFLCSMCAKCF 244
++H+ + ++C
Sbjct: 61 KLHSDTRDYICEFSGPSS 78
Score = 77.6 bits (192), Expect = 6e-18
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 229 HNGIKPFLCSM--CAKCFSRKDDLNRHMKI-HEGSKRYLCT--MCPKCFTRKDDLNRHMR 283
+G C C + FS + LN H K H K + C C K F K L HM+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 284 NHDGLKPFHCSVCFESF 300
H + + C S
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 76.4 bits (189), Expect = 2e-17
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 201 HDGIRPFQCNV--CYICFTNKSDLNRHSRI-HNGIKPFLCS--MCAKCFSRKDDLNRHMK 255
G C+ C F+N+ LN H + H K F C C K F+ K L HMK
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 256 IHEGSKRYLCTMCPKCF 272
+H ++ Y+C
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 71.8 bits (177), Expect = 7e-16
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 257 HEGSKRYLCTM--CPKCFTRKDDLNRHMR-NHDGLKPFHCS--VCFESFTQKALLNIHLR 311
GS C C + F+ + LN H + H K F C C +SF K L H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 312 IHTNSKPHACSICTESF 328
+H++++ + C S
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 70.3 bits (173), Expect = 2e-15
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 145 HDGVKVFLCSV--CSKTFTDKVKFNRHMR-AHEGIKPFQCS--VCSESFTQRSNLNIHLR 199
G C C + F+++ N H + H K F C C +SF + +L H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 200 IHDGIRPFQCNVC 212
+H R + C
Sbjct: 62 LHSDTRDYICEFS 74
Score = 62.2 bits (152), Expect = 2e-12
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 285 HDGLKPFHCSV--CFESFTQKALLNIHLRI-HTNSKPHACS--ICTESFSQKSNLYIHLK 339
G C C F+ + LN H + H + K +C C +SF+ K +L H+K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 340 LQHGVNPFKCDVC 352
L + C+
Sbjct: 62 LHSDTRDYICEFS 74
Score = 58.3 bits (142), Expect = 3e-11
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 4/77 (5%)
Query: 313 HTNSKPHACSI--CTESFSQKSNLYIHLKLQH-GVNPFKCDVCP-NETFEKETQLSLHMR 368
+ S C C FS + L H K QH F C ++F + L HM+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 369 TVHGVKPFKCSMCDEGF 385
+ + C
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 53.7 bits (130), Expect = 2e-09
Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 29/101 (28%)
Query: 91 GEGSFTCS--QCPKTFVDKWHLNRHLK-SHSENKVFRCEQCRFDFYVKREYNRHMKIHDG 147
G C C + F ++ +LN H K H K F C +
Sbjct: 4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPE-------------------- 43
Query: 148 VKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESF 188
C K+F K HM+ H + + C S
Sbjct: 44 ------PACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 53.3 bits (129), Expect = 2e-09
Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 372 GVKPFKCSM--CDEGFPKKSVLKEHLRVSHN-VNPFKCD--ICFKLFTKKSNLRTHIKTH 426
G C C F + L H + H F C C K F K +L+ H+K H
Sbjct: 4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Query: 427 ---EPIPCDKC 434
C+
Sbjct: 64 SDTRDYICEFS 74
Score = 49.9 bits (120), Expect = 4e-08
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 55 KKFKCNI--CPKRYARKNRLTNHLR-THEAGSGDEKSEGGEGSFTCSQ--CPKTFVDKWH 109
C+ C + ++ + L +H + H + SF+C + C K+F K H
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHI----------HQKSFSCPEPACGKSFNFKKH 55
Query: 110 LNRHLKSHSENKVFRCEQC 128
L H+K HS+ + + CE
Sbjct: 56 LKEHMKLHSDTRDYICEFS 74
Score = 36.0 bits (84), Expect = 0.003
Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 12/52 (23%)
Query: 55 KKFKCN--ICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTF 104
K F C C K + K L H++ H + C +
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEHMKLHS----------DTRDYICEFSGPSS 78
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 83.3 bits (207), Expect = 5e-20
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 167 NRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHS 226
+ H KP++C C SF + NL H +H G +P++CN+C F ++L H+
Sbjct: 6 HHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
Query: 227 RIHNGIKPF 235
RIH+G KP+
Sbjct: 66 RIHSGEKPY 74
Score = 83.3 bits (207), Expect = 5e-20
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 192 SNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLN 251
+ + H + +P++C+ C F K +L H +H G KP+ C++C F+R +L
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 252 RHMKIHEGSKRY 263
H +IH G K Y
Sbjct: 63 THTRIHSGEKPY 74
Score = 82.1 bits (204), Expect = 1e-19
Identities = 25/72 (34%), Positives = 34/72 (47%)
Query: 220 SDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLN 279
+ HS + + KP+ C C F K +L H +H G K Y C +C F R +L
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 280 RHMRNHDGLKPF 291
H R H G KP+
Sbjct: 63 THTRIHSGEKPY 74
Score = 77.1 bits (191), Expect = 8e-18
Identities = 24/70 (34%), Positives = 33/70 (47%)
Query: 250 LNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIH 309
+ H + K Y C C F K +L H H G KP+ C++C F + A L H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 310 LRIHTNSKPH 319
RIH+ KP+
Sbjct: 65 TRIHSGEKPY 74
Score = 72.9 bits (180), Expect = 2e-16
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 139 NRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHL 198
+ H + K + C C +F K H H G KP++C++C F + +NL H
Sbjct: 6 HHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
Query: 199 RIHDGIRPF 207
RIH G +P+
Sbjct: 66 RIHSGEKPY 74
Score = 70.9 bits (175), Expect = 1e-15
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 278 LNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIH 337
+ H KP+ C C SF K L H +HT KP+ C+IC F++ +NL H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 60.2 bits (147), Expect = 8e-12
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 306 LNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSL 365
+ H + + KP+ C C SF K NL H + G P++C++C F + L
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNIC-GAQFNRPANLKT 63
Query: 366 HMRTVHGVKPF 376
H R G KP+
Sbjct: 64 HTRIHSGEKPY 74
Score = 58.6 bits (143), Expect = 3e-11
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 363 LSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTH 422
H H KP+KC C F K L H V P++C+IC F + +NL+TH
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 423 IKTH 426
+ H
Sbjct: 65 TRIH 68
Score = 46.7 bits (112), Expect = 4e-07
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 72 LTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFD 131
+H + + C +C +F K +L H H+ K +RC C
Sbjct: 5 HHHHSHMTH----------SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQ 54
Query: 132 FYVKREYNRHMKIHDGVK 149
F H +IH G K
Sbjct: 55 FNRPANLKTHTRIHSGEK 72
Score = 41.7 bits (99), Expect = 3e-05
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHL 114
K +KC+ C + K L +H H GE + C+ C F +L H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHT----------GEKPYRCNICGAQFNRPANLKTHT 65
Query: 115 KSH 117
+ H
Sbjct: 66 RIH 68
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 83.3 bits (207), Expect = 7e-20
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 190 QRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDD 249
+ R ++C+ C F++ SDL++H R H G KP+ C C K F ++
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 250 LNRHMKIHEGSKRY 263
L H ++H GS
Sbjct: 62 LIGHHRVHTGSGPS 75
Score = 80.9 bits (201), Expect = 4e-19
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSR 227
R + ++C C +SF+ S+L+ H R H G +P++C+ C F +S L H R
Sbjct: 8 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
Query: 228 IHNGIKPF 235
+H G P
Sbjct: 68 VHTGSGPS 75
Score = 78.6 bits (195), Expect = 3e-18
Identities = 23/73 (31%), Positives = 30/73 (41%)
Query: 219 KSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDL 278
R + + C C K FS DL++H + H G K Y C C K F ++ L
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Query: 279 NRHMRNHDGLKPF 291
H R H G P
Sbjct: 63 IGHHRVHTGSGPS 75
Score = 74.8 bits (185), Expect = 5e-17
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 249 DLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNI 308
R +RY C C K F+ DL++H R H G KP+ C C ++F Q++ L
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 309 HLRIHTNSKPH 319
H R+HT S P
Sbjct: 65 HHRVHTGSGPS 75
Score = 70.2 bits (173), Expect = 2e-15
Identities = 21/72 (29%), Positives = 34/72 (47%)
Query: 277 DLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYI 336
R + + C C +SF+ + L+ H R HT KP+ C C ++F Q+S+L
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 337 HLKLQHGVNPFK 348
H ++ G P
Sbjct: 65 HHRVHTGSGPSS 76
Score = 69.8 bits (172), Expect = 3e-15
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLR 199
R + + C C K+F+ ++H R H G KP++C C ++F QRS+L H R
Sbjct: 8 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
Query: 200 IHDGIRPF 207
+H G P
Sbjct: 68 VHTGSGPS 75
Score = 60.1 bits (147), Expect = 9e-12
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 302 QKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKET 361
+ + C C +SFS S+L H + G P+KCD C + F + +
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC-GKAFIQRS 60
Query: 362 QLSLHMRTVHGVKPFK 377
L H R G P
Sbjct: 61 HLIGHHRVHTGSGPSS 76
Score = 50.9 bits (123), Expect = 2e-08
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 362 QLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRT 421
+ +KC C + F S L +H R P+KCD C K F ++S+L
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 422 HIKTH 426
H + H
Sbjct: 65 HHRVH 69
Score = 40.9 bits (97), Expect = 5e-05
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHL 114
+++KC+ C K ++ + L+ H RTH GE + C +C K F+ + HL H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHT----------GEKPYKCDECGKAFIQRSHLIGHH 66
Query: 115 KSH 117
+ H
Sbjct: 67 RVH 69
Score = 40.1 bits (95), Expect = 9e-05
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 387 KKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH---EPIPCDKCPEIFEKKTD 443
+KCD C K F+ S+L H +TH +P CD+C + F +++
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 444 LQEH 447
L H
Sbjct: 62 LIGH 65
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 80.6 bits (200), Expect = 4e-19
Identities = 23/68 (33%), Positives = 33/68 (48%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSR 227
H G KP+ C C ++F++ S L H R+H G +P++C C F+ S L H R
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Query: 228 IHNGIKPF 235
IH
Sbjct: 64 IHTSGPSS 71
Score = 78.7 bits (195), Expect = 2e-18
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 222 LNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRH 281
+ S IH+G KP+ C C K FSR L +H ++H G K Y C C K F++ L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 282 MRNHDGLKPF 291
R H
Sbjct: 62 QRIHTSGPSS 71
Score = 77.9 bits (193), Expect = 4e-18
Identities = 27/71 (38%), Positives = 36/71 (50%)
Query: 250 LNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIH 309
+ IH G K Y C C K F+R L +H R H G KP+ C C ++F+Q + L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 310 LRIHTNSKPHA 320
RIHT+
Sbjct: 62 QRIHTSGPSSG 72
Score = 77.5 bits (192), Expect = 5e-18
Identities = 24/70 (34%), Positives = 33/70 (47%)
Query: 194 LNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRH 253
+ IH G +P+ C C F+ S L +H R+H G KP+ C C K FS+ L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 254 MKIHEGSKRY 263
+IH
Sbjct: 62 QRIHTSGPSS 71
Score = 72.5 bits (179), Expect = 3e-16
Identities = 24/68 (35%), Positives = 32/68 (47%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLR 199
IH G K + C C K F+ +H R H G KP++C C ++F+Q S L H R
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Query: 200 IHDGIRPF 207
IH
Sbjct: 64 IHTSGPSS 71
Score = 69.0 bits (170), Expect = 6e-15
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 278 LNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIH 337
+ H G KP+ C C ++F++ ++L H R+HT KP+ C C ++FSQ S L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 338 LKLQHGVNPF 347
++
Sbjct: 62 QRIHTSGPSS 71
Score = 55.9 bits (136), Expect = 2e-10
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 306 LNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSL 365
+ IH+ KP+ C C ++FS+ S L H ++ G P+KC C + F + + L
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLEC-GKAFSQNSGLIN 60
Query: 366 HMRTVHGVKPF 376
H R
Sbjct: 61 HQRIHTSGPSS 71
Score = 50.9 bits (123), Expect = 1e-08
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 363 LSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTH 422
S G KP+ C C + F + S+L +H RV P+KC C K F++ S L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 423 IKTH 426
+ H
Sbjct: 62 QRIH 65
Score = 43.6 bits (104), Expect = 5e-06
Identities = 19/108 (17%), Positives = 27/108 (25%), Gaps = 38/108 (35%)
Query: 72 LTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFD 131
+ H GE + C +C K F L
Sbjct: 2 SSGSSGIHS----------GEKPYGCVECGKAFSRSSIL--------------------- 30
Query: 132 FYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPF 179
+H ++H G K + C C K F+ H R H
Sbjct: 31 -------VQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 41.3 bits (98), Expect = 3e-05
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHL 114
K + C C K ++R + L H R H GE + C +C K F L H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHT----------GEKPYKCLECGKAFSQNSGLINHQ 62
Query: 115 KSHSENK 121
+ H+
Sbjct: 63 RIHTSGP 69
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 80.6 bits (200), Expect = 4e-19
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 171 RAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHN 230
+ P +CS CS S + ++ L IH RIH RPF+CN C S+L++H + +
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 231 GIKPFLCS 238
G S
Sbjct: 62 GDMSGPSS 69
Score = 76.8 bits (190), Expect = 9e-18
Identities = 17/68 (25%), Positives = 27/68 (39%)
Query: 227 RIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHD 286
+ P CS C+ S K L H +IH + + C C + +L++HM+
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 287 GLKPFHCS 294
G S
Sbjct: 62 GDMSGPSS 69
Score = 75.6 bits (187), Expect = 3e-17
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 199 RIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHE 258
P +C+ C ++K+ L H RIH +PF C+ C+ + +L++HMK
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 259 GSKRY 263
G
Sbjct: 62 GDMSG 66
Score = 72.9 bits (180), Expect = 2e-16
Identities = 15/66 (22%), Positives = 23/66 (34%)
Query: 257 HEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNS 316
C+ C + K L H R H +PF C+ C Q + L+ H++
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Query: 317 KPHACS 322
S
Sbjct: 64 MSGPSS 69
Score = 72.5 bits (179), Expect = 3e-16
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 145 HDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
CS CS + + K H R H +PF+C+ CS Q SNL+ H++ G
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 71.0 bits (175), Expect = 1e-15
Identities = 24/61 (39%), Positives = 30/61 (49%)
Query: 283 RNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQH 342
+ P CS C S + KA L IH RIH +P C+ C+ Q SNL H+K H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 343 G 343
G
Sbjct: 62 G 62
Score = 58.7 bits (143), Expect = 2e-11
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 372 GVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH 426
P KCS C K+ L+ H R+ PFKC+ C + SNL H+K
Sbjct: 6 SGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 56.7 bits (138), Expect = 1e-10
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 311 RIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTV 370
++ P CS C+ S S K+ L IH ++ PFKC+ C + ++ + LS HM+
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYC-SFDTKQPSNLSKHMKKF 60
Query: 371 HGVKPFKCS 379
HG S
Sbjct: 61 HGDMSGPSS 69
Score = 55.2 bits (134), Expect = 4e-10
Identities = 16/67 (23%), Positives = 25/67 (37%)
Query: 116 SHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEG 175
S S +C +C + K H +IH + F C+ CS ++HM+ G
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Query: 176 IKPFQCS 182
S
Sbjct: 63 DMSGPSS 69
Score = 53.3 bits (129), Expect = 2e-09
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHL 114
KC+ C + K L H R H + F C+ C +L++H+
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHC----------TDRPFKCNYCSFDTKQPSNLSKHM 57
Query: 115 KSH 117
K
Sbjct: 58 KKF 60
Score = 52.1 bits (126), Expect = 5e-09
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVK 149
CS+C + K L H + H ++ F+C C FD ++HMK G
Sbjct: 6 SGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM 64
Score = 42.1 bits (100), Expect = 1e-05
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH---EPIPCDKCPEIFEKKTDLQEH 447
P KC C + K+ LR H + H P C+ C ++ ++L +H
Sbjct: 9 PEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH 56
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 79.1 bits (196), Expect = 1e-18
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 199 RIHDGIRPFQCNVCYICFTNKSDLNRHSRI--HNGIKPFLCSMCAKCFSRKDDLNRHMKI 256
+G ++C VC +T+ S+ RH +K + C C K F+RKD++ H+KI
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 257 HEG 259
Sbjct: 63 IHK 65
Score = 79.1 bits (196), Expect = 1e-18
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 171 RAHEGIKPFQCSVCSESFTQRSNLNIHLRI--HDGIRPFQCNVCYICFTNKSDLNRHSRI 228
EG ++C VCS +T SN H ++ + C C+ FT K ++ H +I
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 229 HNGI 232
+ I
Sbjct: 63 IHKI 66
Score = 76.8 bits (190), Expect = 8e-18
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 227 RIHNGIKPFLCSMCAKCFSRKDDLNRHMKI--HEGSKRYLCTMCPKCFTRKDDLNRHMRN 284
G + C +C++ ++ + RH K Y C C K FTRKD++ H++
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 285 HDGL 288
+
Sbjct: 63 IHKI 66
Score = 75.3 bits (186), Expect = 3e-17
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 144 IHDGVKVFLCSVCSKTFTDKVKFNRHMR--AHEGIKPFQCSVCSESFTQRSNLNIHLRIH 201
+G + C VCS+ +T F RH +K + C C + FT++ N+ H++I
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 202 DGI 204
I
Sbjct: 64 HKI 66
Score = 69.5 bits (171), Expect = 3e-15
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 283 RNHDGLKPFHCSVCFESFTQKALLNIHLRI--HTNSKPHACSICTESFSQKSNLYIHLKL 340
+G + C VC +T + H N K + C C + F++K N+ H+K+
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 341 QHGV 344
H +
Sbjct: 63 IHKI 66
Score = 65.7 bits (161), Expect = 7e-14
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 368 RTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVN--PFKCDICFKLFTKKSNLRTHIKT 425
T G ++C +C + S H SH N + C CFK FT+K N+ H+K
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 426 HEPI 429
I
Sbjct: 63 IHKI 66
Score = 60.3 bits (147), Expect = 6e-12
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 311 RIHTNSKPHACSICTESFSQKSNLYIHLKLQH--GVNPFKCDVCPNETFEKETQLSLHMR 368
+ C +C+ ++ SN H H V + C C + F ++ ++ H++
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFC-FKEFTRKDNMTAHVK 61
Query: 369 TVHGV 373
+H +
Sbjct: 62 IIHKI 66
Score = 49.5 bits (119), Expect = 4e-08
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 12/74 (16%)
Query: 77 RTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKS--HSENKVFRCEQCRFDFYV 134
T E GE ++ C C + + + RH + KV+ C C +F
Sbjct: 3 FTKE----------GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTR 52
Query: 135 KREYNRHMKIHDGV 148
K H+KI +
Sbjct: 53 KDNMTAHVKIIHKI 66
Score = 48.7 bits (117), Expect = 7e-08
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHL 114
++C +C + Y + H T + C C K F K ++ H+
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKR--------NVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 115 KSH 117
K
Sbjct: 61 KII 63
Score = 43.7 bits (104), Expect = 4e-06
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTHE-----PIPCDKCPEIFEKKTDLQEH 447
++C +C +++T SN H T PC C + F +K ++ H
Sbjct: 10 TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59
Score = 34.8 bits (81), Expect = 0.005
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 54 VKKFKCNICPKRYARKNRLTNHLRTH 79
VK + C C K + RK+ +T H++
Sbjct: 38 VKVYPCPFCFKEFTRKDNMTAHVKII 63
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 77.7 bits (192), Expect = 5e-18
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 223 NRHSRIHNGIKPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNR 280
N + + ++P+ C + C + FSR D+L RH++IH G K + C +C + F+R D L
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 281 HMRNH 285
H+R H
Sbjct: 68 HIRTH 72
Score = 72.0 bits (177), Expect = 5e-16
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 192 SNLNIHLRIHDGIRPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDD 249
+NL ++ RP+ C V C F+ +L RH RIH G KPF C +C + FSR D
Sbjct: 7 NNLLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH 64
Query: 250 LNRHMKIH 257
L H++ H
Sbjct: 65 LTTHIRTH 72
Score = 68.9 bits (169), Expect = 7e-15
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 244 FSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFT 301
++L ++ + Y C + C + F+R D+L RH+R H G KPF C +C +F+
Sbjct: 3 PHPMNNLLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 302 QKALLNIHLRIHT 314
+ L H+R HT
Sbjct: 61 RSDHLTTHIRTHT 73
Score = 61.6 bits (150), Expect = 2e-12
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 139 NRHMKIHDGVKVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNI 196
N + ++ + C V C + F+ + RH+R H G KPFQC +C +F++ +L
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 197 HLRIH 201
H+R H
Sbjct: 68 HIRTH 72
Score = 61.2 bits (149), Expect = 3e-12
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 167 NRHMRAHEGIKPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNR 224
++ +P+ C V C F++ L H+RIH G +PFQC +C F+ L
Sbjct: 10 LNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 225 HSRIH 229
H R H
Sbjct: 68 HIRTH 72
Score = 54.6 bits (132), Expect = 6e-10
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 272 FTRKDDLNRHMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFS 329
++L ++ +P+ C V C F++ L H+RIHT KP C IC +FS
Sbjct: 3 PHPMNNLLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 330 QKSNLYIHLK 339
+ +L H++
Sbjct: 61 RSDHLTTHIR 70
Score = 52.7 bits (127), Expect = 3e-09
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 359 KETQLSLHMRTVHGVKPFKCSM--CDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKK 416
L ++ ++P+ C + CD F + L H+R+ PF+C IC + F++
Sbjct: 5 PMNNLLNYVVP--KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRS 62
Query: 417 SNLRTHIKTH 426
+L THI+TH
Sbjct: 63 DHLTTHIRTH 72
Score = 46.5 bits (111), Expect = 4e-07
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 55 KKFKCNI--CPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNR 112
+ + C + C +R++R + LT H+R H G+ F C C + F HL
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHT----------GQKPFQCRICMRNFSRSDHLTT 67
Query: 113 HLKSHS 118
H+++H+
Sbjct: 68 HIRTHT 73
Score = 45.4 bits (108), Expect = 1e-06
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 109 HLNRHLKSHSENKVFRC--EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKF 166
+L ++ + + C E C F E RH++IH G K F C +C + F+
Sbjct: 8 NLLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL 65
Query: 167 NRHMRAH 173
H+R H
Sbjct: 66 TTHIRTH 72
Score = 43.8 bits (104), Expect = 4e-06
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 307 NIHLRIHTNSKPHACSI--CTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLS 364
N+ + +P+AC + C FS+ L H+++ G PF+C +C F + L+
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRIC-MRNFSRSDHLT 66
Query: 365 LHMRT 369
H+RT
Sbjct: 67 THIRT 71
Score = 40.0 bits (94), Expect = 9e-05
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 14/80 (17%)
Query: 68 RKNRLTNHLRTHEAGSGDEKSEGGEGSFTCS--QCPKTFVDKWHLNRHLKSHSENKVFRC 125
N L N++ + C C + F L RH++ H+ K F+C
Sbjct: 5 PMNNLLNYVVPKMR------------PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC 52
Query: 126 EQCRFDFYVKREYNRHMKIH 145
C +F H++ H
Sbjct: 53 RICMRNFSRSDHLTTHIRTH 72
Score = 35.7 bits (83), Expect = 0.003
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 54 VKKFKCNICPKRYARKNRLTNHLRTH 79
K F+C IC + ++R + LT H+RTH
Sbjct: 47 QKPFQCRICMRNFSRSDHLTTHIRTH 72
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 78.0 bits (193), Expect = 6e-18
Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Query: 216 FTNKSDLNRHSRIHNGIKPFLCS--MCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFT 273
F + L H H P+ C C K FS L RH K+H G C
Sbjct: 13 FKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGK 72
Query: 274 RKDDLNRHMR 283
+H+
Sbjct: 73 TWTLYLKHVA 82
Score = 68.4 bits (168), Expect = 1e-14
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 150 VFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSV--CSESFTQRSNLNIHLRIHDGIR 205
+++C C K F + H +H P++C C + F+ S L H ++H G
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 206 PFQCNVCYICFTNKSDLNRH-SRIH 229
+ + C + +H + H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 65.7 bits (161), Expect = 1e-13
Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Query: 240 CAKCFSRKDDLNRHMKIHEGSKRYLCT--MCPKCFTRKDDLNRHMRNHDGL---KPFHCS 294
C K F + + L H H Y C C K F+ L RH + H G K CS
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 295 VCFESFTQKALLNIHLRIH 313
+++T L H
Sbjct: 69 FVGKTWTL--YLKHVAECH 85
Score = 63.0 bits (154), Expect = 1e-12
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIHTNSKP 318
Y+C C K F + + L H +H P+ C C + F+ + L H ++H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 319 HACSICTESFSQKSNLYIHLKLQH 342
C+ + H+ H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 51.9 bits (125), Expect = 1e-08
Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 33/113 (29%)
Query: 291 FHCSV--CFESFTQKALLNIHLRIHTNSKPHACS--ICTESFSQKSNLYIHLKLQHGVNP 346
+ C C ++F + L +H HT P+ C C + FS S L
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRL------------ 49
Query: 347 FKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSH 399
H + G K C ++ +H+ H
Sbjct: 50 -----------------KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 49.5 bits (119), Expect = 6e-08
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 14/91 (15%)
Query: 57 FKCNI--CPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQ--CPKTFVDKWHLNR 112
+ C+ C K + + N+L H +H + + C C K F L R
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHT----------QQLPYECPHEGCDKRFSLPSRLKR 51
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMK 143
H K H+ + + C F Y +H+
Sbjct: 52 HEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82
Score = 49.5 bits (119), Expect = 6e-08
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 347 FKCDV--CPNETFEKETQLSLHMRTVHGVKPFKCS--MCDEGFPKKSVLKEHLRVSHNVN 402
+ C C + F+K QL +H + P++C CD+ F S LK H +V
Sbjct: 2 YVCHFENC-GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 403 PFKCDICFKLFTKKSNLRTHIK-TH 426
K D C + + H+ H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 49.2 bits (118), Expect = 7e-08
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 376 FKCSM--CDEGFPKKSVLKEHLRVSHNVNPFKCD--ICFKLFTKKSNLRTHIKTHE---P 428
+ C C + F K + LK H P++C C K F+ S L+ H K H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 429 IPCDKCPEIFEKKTDLQEHVDKCH 452
D C + + T +HV +CH
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 48.4 bits (116), Expect = 1e-07
Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 96 TCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQ--CRFDFYVKREYNRHMKIHDGVKVFLC 153
C K F L H SH++ + C C F + RH K+H G
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 154 SVCS---KTFTDKVKFNRHMRAH 173
CS KT+T +K H
Sbjct: 65 DSCSFVGKTWTLYLK--HVAECH 85
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 77.8 bits (192), Expect = 6e-18
Identities = 17/98 (17%), Positives = 25/98 (25%), Gaps = 25/98 (25%)
Query: 173 HEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGI 232
G QC +C + Q+++LN H R H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETV-------------------------AA 36
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPK 270
F C C K F + D + H +
Sbjct: 37 LRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSG 74
Score = 75.1 bits (185), Expect = 5e-17
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 229 HNGIKPFLCSMCAKCFSRKDDLNRHMKIH---EGSKRYLCTMCPKCFTRKDDLNRHMRNH 285
+G C +C +K LN H + H + R+ C C K F + D + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 286 DGLKPFHCSVC 296
Sbjct: 62 HPALLLAPQES 72
Score = 72.8 bits (179), Expect = 3e-16
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 285 HDGLKPFHCSVCFESFTQKALLNIHLRIHTNS---KPHACSICTESFSQKSNLYIHLKLQ 341
G C +C + QKA LN H R H + C C + F + ++ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 342 HGVNPFKCDVCP 353
H
Sbjct: 62 HPALLLAPQESS 73
Score = 67.0 bits (164), Expect = 3e-14
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 257 HEGSKRYLCTMCPKCFTRKDDLNRHMRNH---DGLKPFHCSVCFESFTQKALLNIHLRIH 313
GS C +C +K LN H R H F C C + F + + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 314 TNSKPHAC 321
+ A
Sbjct: 62 HPALLLAP 69
Score = 64.3 bits (157), Expect = 3e-13
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 313 HTNSKPHACSICTESFSQKSNLYIHLK---LQHGVNPFKCDVCPNETFEKETQLSLHMRT 369
+ S C IC + QK++L H + F C+ C + FEK ++ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFC-GKRFEKPDSVAAHRSK 60
Query: 370 VHGVKPFKCSMC 381
H
Sbjct: 61 SHPALLLAPQES 72
Score = 64.0 bits (156), Expect = 3e-13
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 372 GVKPFKCSMCDEGFPKKSVLKEHLRV---SHNVNPFKCDICFKLFTKKSNLRTHIKTHEP 428
G +C +C +K+ L H R + F C+ C K F K ++ H P
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63
Query: 429 IPCDKCPE 436
E
Sbjct: 64 ALLLAPQE 71
Score = 62.4 bits (152), Expect = 1e-12
Identities = 14/74 (18%), Positives = 20/74 (27%), Gaps = 7/74 (9%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHL 114
+C IC +K L H R H F C C K F + H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKH-------AETVAALRFPCEFCGKRFEKPDSVAAHR 58
Query: 115 KSHSENKVFRCEQC 128
+ ++
Sbjct: 59 SKSHPALLLAPQES 72
Score = 57.4 bits (139), Expect = 8e-11
Identities = 16/72 (22%), Positives = 19/72 (26%), Gaps = 3/72 (4%)
Query: 117 HSENKVFRCEQCRFDFYVKREYNRHMKIH---DGVKVFLCSVCSKTFTDKVKFNRHMRAH 173
S + +CE C F K N H + H F C C K F H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 174 EGIKPFQCSVCS 185
S
Sbjct: 62 HPALLLAPQESS 73
Score = 52.8 bits (127), Expect = 4e-09
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH------EPIPCDKCPEIFEKKTDLQEHVDKCH 452
+C+IC +K++L H + H PC+ C + FEK + H K H
Sbjct: 7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 72.9 bits (178), Expect = 9e-16
Identities = 20/97 (20%), Positives = 29/97 (29%), Gaps = 5/97 (5%)
Query: 220 SDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKI-----HEGSKRYLCTMCPKCFTR 274
S + I G F C C+ + +L HM + + R
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 275 KDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLR 311
K L D K C C SF L++H+
Sbjct: 65 KRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 72.5 bits (177), Expect = 1e-15
Identities = 19/92 (20%), Positives = 27/92 (29%), Gaps = 5/92 (5%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRI-----HDGIRPFQCNVCYICFTNKSDLN 223
+ G F+C CS ++ L +H+ D N K L
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMK 255
+ K C C F DL+ HM
Sbjct: 70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 72.1 bits (176), Expect = 1e-15
Identities = 19/102 (18%), Positives = 31/102 (30%), Gaps = 5/102 (4%)
Query: 189 TQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRI-----HNGIKPFLCSMCAKC 243
+ S+ ++ I G F+C C + +L H + + +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 244 FSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNH 285
RK L + K C C F DL+ HM
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKT 103
Score = 69.8 bits (170), Expect = 1e-14
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 6/108 (5%)
Query: 245 SRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMR-----NHDGLKPFHCSVCFES 299
S + I G+ ++ C C + +L HM D + + + S
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 300 FTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHL-KLQHGVNP 346
+K L K C C SF +L +H+ K +H
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV 109
Score = 59.4 bits (143), Expect = 5e-11
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 5/96 (5%)
Query: 109 HLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKI-----HDGVKVFLCSVCSKTFTDK 163
+ + FRC+ C + E HM D + + + K
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 164 VKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLR 199
+ K +C C SF +L++H+
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 56.7 bits (136), Expect = 4e-10
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 6/105 (5%)
Query: 329 SQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVH-----GVKPFKCSMCDE 383
S S+ ++ + G + F+C C + ++ +L++HM + +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDC-SAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRW 60
Query: 384 GFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTHEP 428
P+K L E KC C F +L H+ +
Sbjct: 61 SKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105
Score = 52.8 bits (126), Expect = 8e-09
Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 5/88 (5%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKS--HSENKVFRCEQCRFDFY---VKREYNRHMKIH 145
G F C C + L H+ H + + + KR
Sbjct: 16 GASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKE 75
Query: 146 DGVKVFLCSVCSKTFTDKVKFNRHMRAH 173
D KV C C +F + HM
Sbjct: 76 DAQKVLKCMYCGHSFESLQDLSVHMIKT 103
Score = 50.1 bits (119), Expect = 7e-08
Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 8/100 (8%)
Query: 361 TQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSH-----NVNPFKCDICFKLFTK 415
+ L+ G F+C C + L H+ + N + +
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 416 KSNLRTHIKTH---EPIPCDKCPEIFEKKTDLQEHVDKCH 452
K +L + + C C FE DL H+ K
Sbjct: 65 KRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 49.4 bits (117), Expect = 2e-07
Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 5/89 (5%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHL 114
KF+C C Y LT H+ + + + + K L
Sbjct: 18 SKFRCKDCSAAYDTLVELTVHMNETG-----HYRDDNHETDNNNPKRWSKPRKRSLLEME 72
Query: 115 KSHSENKVFRCEQCRFDFYVKREYNRHMK 143
KV +C C F ++ + HM
Sbjct: 73 GKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 70.2 bits (173), Expect = 2e-15
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHM-KIHEG 259
R F C VC F + L RH R H KP+ C +C + F+R+D L RH KIH G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 69.4 bits (171), Expect = 3e-15
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHS-RIHNG 231
+ F C VC+ +F ++ +L H R H +P+ C +C FT + L RH+ +IH+G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 67.1 bits (165), Expect = 2e-14
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHM-RNHDG 287
+ F+C +C + F+R++ L RH + H K Y C +C + FTR+D L RH + H G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 64.0 bits (157), Expect = 3e-13
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHL-RIHT 314
+ ++C +C + F R++ L RH R+H KP+ C +C +FT++ LL H +IH+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 63.3 bits (155), Expect = 5e-13
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQH 342
+ F C VC +F ++ L H R HTN KP+ C +C +F+++ L H + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 60.6 bits (148), Expect = 4e-12
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHL-RIHDG 203
+ F+C VC++ F + RH R+H KP+ C +C+ +FT+R L H +IH G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 48.3 bits (116), Expect = 7e-08
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 374 KPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHI-KTH 426
+ F C +C F ++ LK H R N P+ C +C + FT++ L H K H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 43.2 bits (103), Expect = 5e-06
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHL 114
+ F C +C + +AR+ L H R+H E + C C + F + L RH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHT----------NEKPYPCGLCNRAFTRRDLLIRHA 50
Query: 115 K 115
+
Sbjct: 51 Q 51
Score = 42.9 bits (102), Expect = 7e-06
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 346 PFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSH 399
F C+VC F ++ L H R+ KP+ C +C+ F ++ +L H + H
Sbjct: 2 SFVCEVC-TRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 39.8 bits (94), Expect = 7e-05
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH---EPIPCDKCPEIFEKKTDLQEHVDKCH 452
F C++C + F ++ +L+ H ++H +P PC C F ++ L H K H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 39.4 bits (93), Expect = 1e-04
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHM-KIHDG 147
F C C + F + HL RH +SH+ K + C C F + RH KIH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 36.7 bits (86), Expect = 0.001
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 121 KVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHM-RAHEG 175
+ F CE C F + RH + H K + C +C++ FT + RH + H G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 65.1 bits (159), Expect = 1e-13
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 219 KSDLNRHSRIHNGIKPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTR 274
S + + I+ +CS C K + + L H + H G K + C+ C + F R
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 275 KDDLNRHMRNH 285
D+L+RH R H
Sbjct: 62 SDELSRHRRTH 72
Score = 64.3 bits (157), Expect = 2e-13
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 191 RSNLNIHLRIHDGIRPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSM--CAKCFSR 246
S + IR C+ C + S L H+R H G KPF CS C + F+R
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 247 KDDLNRHMKIH 257
D+L+RH + H
Sbjct: 62 SDELSRHRRTH 72
Score = 63.2 bits (154), Expect = 7e-13
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 167 NRHMRAHEGIKPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNV--CYICFTNKSDL 222
+ I+ CS C +++ + S+L H R H G +PF C+ C F +L
Sbjct: 6 SGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDEL 65
Query: 223 NRHSRIH 229
+RH R H
Sbjct: 66 SRHRRTH 72
Score = 53.2 bits (128), Expect = 2e-09
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 135 KREYNRHMKIHDGVKVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSV--CSESFTQ 190
+ ++ +CS C KT+ H R H G KPF CS C F +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 191 RSNLNIHLRIH 201
L+ H R H
Sbjct: 62 SDELSRHRRTH 72
Score = 52.4 bits (126), Expect = 3e-09
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 250 LNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSV--CFESFTQKAL 305
+ + ++C+ C K + + L H R H G KPF CS C F +
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64
Query: 306 LNIHLRIH 313
L+ H R H
Sbjct: 65 LSRHRRTH 72
Score = 50.5 bits (121), Expect = 2e-08
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 278 LNRHMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSI--CTESFSQKSN 333
+ + ++ CS C +++ + + L H R HT KP +CS C F++
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64
Query: 334 LYIHLK 339
L H +
Sbjct: 65 LSRHRR 70
Score = 43.1 bits (102), Expect = 6e-06
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 361 TQLSLHMRTVHGVKPFKCSM--CDEGFPKKSVLKEHLRVSHNVNPFKCDI--CFKLFTKK 416
+ S ++ CS C + + K S LK H R PF C C + F +
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 417 SNLRTHIKTH 426
L H +TH
Sbjct: 63 DELSRHRRTH 72
Score = 38.9 bits (91), Expect = 3e-04
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 14/67 (20%)
Query: 55 KKFKCNI--CPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQ--CPKTFVDKWHL 110
+ C+ C K Y + + L H RTH GE F+CS C + F L
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHT----------GEKPFSCSWKGCERRFARSDEL 65
Query: 111 NRHLKSH 117
+RH ++H
Sbjct: 66 SRHRRTH 72
Score = 34.3 bits (79), Expect = 0.009
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 388 KSVLKEHLRVSHNVNPFKCDI--CFKLFTKKSNLRTHIKTH---EPIPCD--KCPEIFEK 440
S S + C C K + K S+L+ H +TH +P C C F +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 441 KTDLQEH 447
+L H
Sbjct: 62 SDELSRH 68
Score = 33.5 bits (77), Expect = 0.018
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 81 AGSGDEKSEGGEGSFTCSQ--CPKTFVDKWHLNRHLKSHSENKVFRC--EQCRFDFYVKR 136
SG + S CS C KT+ HL H ++H+ K F C + C F
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 137 EYNRHMKIH 145
E +RH + H
Sbjct: 64 ELSRHRRTH 72
Score = 33.1 bits (76), Expect = 0.027
Identities = 22/93 (23%), Positives = 30/93 (32%), Gaps = 33/93 (35%)
Query: 309 HLRIHTNSKPHACSI--CTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLH 366
+ + H CS C +++ + S HLK H
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSS----HLKA-------------------------H 38
Query: 367 MRTVHGVKPFKCSM--CDEGFPKKSVLKEHLRV 397
RT G KPF CS C+ F + L H R
Sbjct: 39 TRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 6e-12
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++CS C ++FT++S L+IH + H G R +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 56.4 bits (137), Expect = 9e-11
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ CS C ++FT+K+ L+IH + HT + S
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 54.4 bits (132), Expect = 4e-10
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ CS C K F+RK L+ H + H G + +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 53.7 bits (130), Expect = 6e-10
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++C+ C FT KS L+ H + H G + S
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C+ C K FTRK L+ H ++H G + S
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ CS C ++F++KS L+IH + G
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + CS C K FT K + H ++H G + S
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+KCS C + F +KS L H +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC C K FT+KS L H ++H
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 31.7 bits (73), Expect = 0.040
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ + GE + CS C K F K L+ H +SH+ +
Sbjct: 2 SSGSSGT----------GEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 29.4 bits (67), Expect = 0.26
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KC+ C K + RK+ L H ++H
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 29.0 bits (66), Expect = 0.41
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K ++C C F K + H + H G + S
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 6e-12
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++CS+C +SFT++S L++H +IH G +P +
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 2e-10
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ CS+C +SFT+K+ L++H +IHT KP S
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 2e-09
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ CS+C K F++K L+ H +IH G K +
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 2e-09
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 196 IHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++C++C FT KS L+ H +IH G KP S
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 5e-08
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 308 IHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ CSIC +SF++KS L++H ++ G P
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 6e-08
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C++C K FT+K L+ H + H G KP S
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 44.5 bits (106), Expect = 1e-06
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + CS+C K+FT K + + H + H G KP S
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 33.7 bits (78), Expect = 0.007
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP++CS+C + F KKS L H ++ P
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.018
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++C IC K FTKKS L H + H
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIH 35
Score = 30.2 bits (69), Expect = 0.14
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ GE + CS C K+F K L+ H + H+ K
Sbjct: 3 SGSSGT----------GEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K ++C+IC K + +K++L H + H
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIH 35
Score = 25.6 bits (57), Expect = 7.0
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K + C C F K + + H +IH G K S
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 61.1 bits (148), Expect = 6e-12
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 256 IHEGSKRYLCTMCPKCFTRKDDLNRHMRN-HDGLKPFH--------CSVCFESFTQKALL 306
I E C + F+ +L H+ H G + C +SF K L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 307 NIHLRIHTNSKPHACS 322
H+R+HT K S
Sbjct: 79 VNHIRVHTGEKSGPSS 94
Score = 56.1 bits (135), Expect = 4e-10
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 9/75 (12%)
Query: 144 IHDGVKVFLCSVCSKTFTDKVKFNRHM-RAHEGIKPFQ--------CSVCSESFTQRSNL 194
I + C +TF+ + H+ H G C +SF + L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 195 NIHLRIHDGIRPFQC 209
H+R+H G +
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 55.0 bits (132), Expect = 9e-10
Identities = 19/75 (25%), Positives = 24/75 (32%), Gaps = 9/75 (12%)
Query: 173 HEGIKPFQCSVCSESFTQRSNLNIHL-RIHDGIRPFQCNVCY--------ICFTNKSDLN 223
E C +F+ L H+ H G +VCY F K L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 224 RHSRIHNGIKPFLCS 238
H R+H G K S
Sbjct: 80 NHIRVHTGEKSGPSS 94
Score = 53.0 bits (127), Expect = 4e-09
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 9/76 (11%)
Query: 200 IHDGIRPFQCNVCYICFTNKSDLNRH-SRIHNGIKPF--------LCSMCAKCFSRKDDL 250
I + C F+ +L H + H G C K F K L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 251 NRHMKIHEGSKRYLCT 266
H+++H G K +
Sbjct: 79 VNHIRVHTGEKSGPSS 94
Score = 51.1 bits (122), Expect = 2e-08
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 8/76 (10%)
Query: 312 IHTNSKPHACSICTESFSQKSNLYIHLKLQH-GVNPFKCDVC-------PNETFEKETQL 363
I C +FS L H+ ++H G VC ++F+ + +L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 364 SLHMRTVHGVKPFKCS 379
H+R G K S
Sbjct: 79 VNHIRVHTGEKSGPSS 94
Score = 50.0 bits (119), Expect = 5e-08
Identities = 19/95 (20%), Positives = 27/95 (28%), Gaps = 21/95 (22%)
Query: 89 EGGEGSFTCSQCPKTFVDKWHLNRHL-KSHSENKVFRCEQCRFDFYVKREYNRHMKIHDG 147
+ + S C +TF L H+ H C ++
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE---------------- 63
Query: 148 VKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
C K+F K K H+R H G K S
Sbjct: 64 ----ECPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 44.2 bits (104), Expect = 6e-06
Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 9/75 (12%)
Query: 284 NHDGLKPFHCSVCFESFTQKALLNIHL-RIHTNSKPHA--------CSICTESFSQKSNL 334
+ C +F+ L H+ H C +SF K L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 335 YIHLKLQHGVNPFKC 349
H+++ G
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 43.4 bits (102), Expect = 1e-05
Identities = 15/65 (23%), Positives = 19/65 (29%), Gaps = 9/65 (13%)
Query: 371 HGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFK---------CDICFKLFTKKSNLRT 421
CD F L H+ + H P + C K F K L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 422 HIKTH 426
HI+ H
Sbjct: 81 HIRVH 85
Score = 41.1 bits (96), Expect = 7e-05
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHL 114
C + ++ + L H+ G ++ + C + K+F K+ L H+
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY-WEECPREGKSFKAKYKLVNHI 82
Query: 115 KSHSENKVFRC 125
+ H+ K
Sbjct: 83 RVHTGEKSGPS 93
Score = 27.2 bits (60), Expect = 5.5
Identities = 7/28 (25%), Positives = 8/28 (28%)
Query: 425 THEPIPCDKCPEIFEKKTDLQEHVDKCH 452
P C F +L HV H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.8 bits (162), Expect = 1e-11
Identities = 88/599 (14%), Positives = 165/599 (27%), Gaps = 172/599 (28%)
Query: 5 SMMGKYVDANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVKKF-KCNICP 63
M+ K+V+ E + + L+ +E ++ + F K N+
Sbjct: 77 EMVQKFVE--EVLRINYKFLM-SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS- 132
Query: 64 KRYARKNRLTNHL---RTHE-------AGSG----------DEKSEGGEG------SFTC 97
R +L L R + GSG K + +
Sbjct: 133 -RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 98 SQCPKTFVDK-WHLNRHLK-------SHSENKVFRCEQCRF---DFYVKREYNRHMKIHD 146
P+T ++ L + HS N R + + Y + +
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 147 GV------KVFL--CSVC----SKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNL 194
V F C + K TD + H + S + T
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT--TTHISLDHH-----SMTLTPDEVK 304
Query: 195 NIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHM 254
++ L+ D DL R P S+ A+ S +D L
Sbjct: 305 SLLLKYLD--------------CRPQDLPREVL---TTNPRRLSIIAE--SIRDGLATW- 344
Query: 255 KIHEGSKRYLCTMCPKCFTRKDDLNRHMRNH-DGLKPFHCSVCFESFTQKALLNIHLRIH 313
+ K C D L + + + L+P F+ ++ I
Sbjct: 345 ---DNWKHVNC----------DKLTTIIESSLNVLEPAEYRKMFDRL---SVFPPSAHIP 388
Query: 314 T--------NSKPHACSICTESFSQKS--------------NLYIHLKLQHGVNPFKCDV 351
T + + + S ++Y+ LK++
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK---------- 438
Query: 352 CPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKK------SVLKEHLRV---SHNVN 402
NE +LH V K D+ P S + HL+ +
Sbjct: 439 LENEY-------ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 403 PFKCDICFKLFTKKSNLRTHIKTHEPIPCDKCPEIFEKKTDLQ---EHVDKCHNLHEEDE 459
F+ +F L I+ H+ + I L+ ++ +E
Sbjct: 492 LFR-----MVFLDFRFLEQKIR-HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Query: 460 EEGLDEFDAPKEKSFNCSKCLNIVRIPVEIKSLVEKLTSEGVPAVQAYEHGEDAARDAD 518
+ +F E++ CSK +++RI +L+ + E + + E+A +
Sbjct: 546 NA-ILDFLPKIEENLICSKYTDLLRI-----ALMAE--DEAI-----F---EEAHKQVQ 588
Score = 53.7 bits (128), Expect = 1e-07
Identities = 95/636 (14%), Positives = 182/636 (28%), Gaps = 201/636 (31%)
Query: 12 DANEEE--SKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVKKFKCN---ICPKRY 66
+ E + KDI V E++ ++ D ++ +D K ++ K + + +
Sbjct: 10 ETGEHQYQYKDILS-VFEDAFVDNFDCKDVQDMP-------KSILSKEEIDHIIMSKDAV 61
Query: 67 ARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVD-------KWHLNRHLKSHSE 119
+ RL L + + + + FV+ K+ ++ +E
Sbjct: 62 SGTLRLFWTLLSKQ-----------------EEMVQKFVEEVLRINYKFLMSPI---KTE 101
Query: 120 NKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFL-CSVCSKTFTDKVKFN-RHMRAHEGI- 176
+ + R YN +VF +V K++ +R + +
Sbjct: 102 QRQPSMMTRMYIEQRDRLYN-------DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 177 --------KPFQC---SVC-SESFTQRSNLNIH-------LRIHDGIRPFQCNVCYICFT 217
K VC S + + I + Q + Y
Sbjct: 155 IDGVLGSGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-KLLY---- 207
Query: 218 NKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDD 277
+ D N SR + L + S + +L R +K SK Y C +
Sbjct: 208 -QIDPNWTSRSDHSSNIKL-----RIHSIQAELRRLLK----SKPY-----ENCLLVLLN 252
Query: 278 LNRHMRNHDGLKPF--HCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLY 335
+ +N F C K LL T K + T+ S +
Sbjct: 253 V----QNAKAWNAFNLSC---------KILLT------TRFK----QV-TDFLS--AATT 286
Query: 336 IHLKLQHGVNPFKCDVCPNETFEKETQLS--LHMRT------VHGVKPFKCSMCDEGFPK 387
H+ L H E ++ L L R V P + S+ E
Sbjct: 287 THISLDHHSMTL-------TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE---- 335
Query: 388 KSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTHEPIPCDKCPE---IFEKKTDL 444
+++ L N CD KL + + + + EP K + +F +
Sbjct: 336 --SIRDGLATWDNWKHVNCD---KL---TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 445 QEHVDKC--HNLHEEDEEEGLDEFDA-------PKEKSFNCSKCLNIVRIPVEI-----K 490
+ ++ + D +++ PKE + + +++ +E +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 491 SLVEK--------LTSEGVPAVQAY------------EHGEDAARDADILVTATYSSVPV 530
S+V+ P + Y EH E L +
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT-----LFRMVF----- 497
Query: 531 LKYEWLKKKDAHINAVGAGLNHHSEL-----DAAIY 561
L + +L++K I N + Y
Sbjct: 498 LDFRFLEQK---IRHDSTAWNASGSILNTLQQLKFY 530
Score = 46.4 bits (109), Expect = 3e-05
Identities = 54/324 (16%), Positives = 96/324 (29%), Gaps = 111/324 (34%)
Query: 311 RIHTNSK-PHACSICTESFSQKSNLYIHLKLQHGVNPF-KCDVCPNETFEKETQLSLHMR 368
I T + P S+ T + ++ + +L + F K +V + + K Q L +R
Sbjct: 97 PIKTEQRQP---SMMTRMYIEQRD-----RLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 369 -----TVHGVKPFKCSMCDEGFPKKSVL-KEHLRVSHNVNPFKCDICFKLF-TKKSNLRT 421
+ GV G K+ + + S+ V +C + FK+F N
Sbjct: 149 PAKNVLIDGVL---------GS-GKTWVALDVCL-SYKV---QCKMDFKIFWLNLKN--- 191
Query: 422 HIKTHEPIPCDKCPEIFEKKTDLQEHVDKCHN----------LHEEDEEEGLDEFDAPKE 471
C+ + E L +D L + L K
Sbjct: 192 ---------CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKS 240
Query: 472 KSFNCSKCLNIVRIPVEIKSLVEKLTSEGVPAVQAYEHGEDAARDADILVTATYSSVPVL 531
K + CL ++ V+ A+ IL+T + V
Sbjct: 241 KPYE--NCLLVLL-NVQNAKAWN-----------AFNLS------CKILLTTRFKQV--- 277
Query: 532 KYEWLKKKDAHINAVGAGLNHHSELDAAIYSHSSIFFDSEAAARGELKGLYEQV------ 585
+ + A H LD H S+ + E+K L +
Sbjct: 278 -----------TDFLSAATTTHISLD-----HHSMTLTPD-----EVKSLLLKYLDCRPQ 316
Query: 586 --PANMVGE---VGGLIAANLTRD 604
P ++ +IA ++ RD
Sbjct: 317 DLPREVLTTNPRRLSIIAESI-RD 339
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C C + + + NL++H ++H G RP +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 52.9 bits (128), Expect = 2e-09
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 196 IHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++C C + +K +L+ H ++H G +P S
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 52.5 bits (127), Expect = 2e-09
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C C + + K L++H ++HT +P S
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 51.4 bits (124), Expect = 4e-09
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C C K ++ K +L+ H K+H G + +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 48.3 bits (116), Expect = 6e-08
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 308 IHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C C + ++ K NL +H K+ G P
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 46.8 bits (112), Expect = 2e-07
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K + K +L+ H + H G +P S
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C C K + K + H + H G +P S
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+KC C +G+ K L H +V P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 32.9 bits (76), Expect = 0.016
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC+ C K + K NL H K H
Sbjct: 12 PYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 29.4 bits (67), Expect = 0.33
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 10/51 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ GE + C +C K + K++L+ H K H+ +
Sbjct: 3 SGSSGT----------GEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 27.9 bits (63), Expect = 1.1
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KC C K Y K L H + H
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 26.3 bits (59), Expect = 3.2
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K ++CE+C + K + H K+H G + S
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G PF CS C + FT ++NL IH +IH G RP +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 53.3 bits (129), Expect = 1e-09
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G PF C+ C FT+K++L H +IH G +P S
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 52.9 bits (128), Expect = 1e-09
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G PF+CS C K F+ K +L H KIH G + +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 52.9 bits (128), Expect = 1e-09
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G PF CS C + FT K L IH +IHT +P S
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 48.6 bits (117), Expect = 4e-08
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G ++C+ C K FT K +L H + H G +P S
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 47.9 bits (115), Expect = 7e-08
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T P CS C + F+ K+NL IH K+ G P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 45.2 bits (108), Expect = 8e-07
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G F+CS C K FT K H + H G +P S
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 34.0 bits (79), Expect = 0.007
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PF C C K+FT K+NL H K H
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIH 35
Score = 34.0 bits (79), Expect = 0.008
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G PF CS C + F K+ L H ++ P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 31.3 bits (72), Expect = 0.057
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ + GE F CS+C K F K +L H K H+ +
Sbjct: 2 SSGSSGT----------GENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 29.0 bits (66), Expect = 0.39
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
F C+ C K + K L H + H
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIH 35
Score = 27.5 bits (62), Expect = 1.2
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + F C +C F K H KIH G + S
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G +P+ C+VC ++FT RSNL H +IH G +P +
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 54.0 bits (131), Expect = 5e-10
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLC 265
G +P++C++C K F+ + +L +H KIH G K
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 53.6 bits (130), Expect = 7e-10
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G RP+ C VC FT++S+L +H +IH G KP S
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 53.6 bits (130), Expect = 7e-10
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G +P+ C+VC ++FT ++ L H +IHT KP S
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G + Y+CT+C K FT + +L +H + H G KP S
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 46.3 bits (111), Expect = 3e-07
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T +P+ C++C ++F+ +SNL H K+ G P
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 45.9 bits (110), Expect = 4e-07
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G + ++C+VC K FTD+ +H + H G KP S
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.020
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+ C +C K FT +SNL H K H
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIH 35
Score = 32.1 bits (74), Expect = 0.031
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G +P+ C++C + F +S L +H ++ P
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.21
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 10/51 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ GE + C+ C K F D+ +L +H K H+ K
Sbjct: 3 SGSSGT----------GERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.6
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
+ + C +C K + ++ L H + H
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 2e-11
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++CS C +SFT +S L IH + H G R +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 55.2 bits (134), Expect = 2e-10
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ CS C +SFT K+ L IH + HT + S
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 52.5 bits (127), Expect = 2e-09
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++C+ C FT KS L H + H G + S
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 52.5 bits (127), Expect = 2e-09
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ CS C K F+ K L H K H G + +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 49.5 bits (119), Expect = 2e-08
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C+ C K FT K L H + H G + S
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 48.3 bits (116), Expect = 5e-08
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ CS C +SF+ KS L IH K G
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 45.2 bits (108), Expect = 8e-07
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + CS C K+FT K + H + H G + S
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 37.5 bits (88), Expect = 3e-04
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+KCS C + F KS L+ H +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 35.2 bits (82), Expect = 0.003
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC C K FT KS LR H K H
Sbjct: 12 PYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 31.7 bits (73), Expect = 0.049
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 10/52 (19%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ + GE + CS C K+F K L H K H+ +
Sbjct: 2 SSGSSGT----------GEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 28.7 bits (65), Expect = 0.58
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KC+ C K + K+RL H + H
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 27.5 bits (62), Expect = 1.4
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K ++C C F K H K H G + S
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 2e-11
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KPF+C C + FTQ S L+ H R+H G +P +
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 54.5 bits (132), Expect = 4e-10
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KPF C C + FTQ + L+ H R+HT KP S
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 2e-09
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
+G KPF C C K F++ L+ H ++H G K +
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 51.8 bits (125), Expect = 3e-09
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +PF+C C FT S L+ H R+H G KP S
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 49.1 bits (118), Expect = 3e-08
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K + C C K FT+ L+ H R H G KP S
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 4e-07
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
+ KP C C + F+Q S L+ H ++ G P
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 6e-07
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K F C C K FT + + H R H G KP S
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KPFKC C + F + S L H RV P
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.013
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PFKC+ C K FT+ S L +H + H
Sbjct: 12 PFKCEECGKRFTQNSQLHSHQRVH 35
Score = 31.0 bits (71), Expect = 0.089
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 10/54 (18%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQ 127
+ + GE F C +C K F L+ H + H+ K
Sbjct: 2 SSGSSGS----------GEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 29.4 bits (67), Expect = 0.30
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K FKC C KR+ + ++L +H R H
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 2e-11
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KPFQC C + FTQ S+L+ H R+H G +P +
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 8e-10
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KPF C C + FTQ + L+ H R+HT KP S
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 52.2 bits (126), Expect = 2e-09
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
+G KPF C C K F++ L+ H ++H G K +
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 52.2 bits (126), Expect = 3e-09
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +PFQC C FT S L+ H R+H G KP S
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 6e-08
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K + C C K FT+ L+ H R H G KP S
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 9e-07
Identities = 15/43 (34%), Positives = 16/43 (37%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K F C C K FT + H R H G KP S
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 1e-06
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
+ KP C C + F+Q S+L+ H ++ G P
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.003
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KPF+C C + F + S L H RV P
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.048
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 10/51 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ GE F C +C K F HL+ H + H+ K
Sbjct: 3 SGSSGS----------GEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.056
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 393 EHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH 426
PF+C+ C K FT+ S+L +H + H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 28.7 bits (65), Expect = 0.57
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K F+C C KR+ + + L +H R H
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 58.3 bits (142), Expect = 2e-11
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G+KP+ CS C+++F+ +S L +H R H G++P +
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 54.8 bits (133), Expect = 3e-10
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G+KP+ CS C ++F+ K+ L +H R HT KP S
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 52.9 bits (128), Expect = 1e-09
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G+KP+ CS CAK FS K L H + H G K +
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 50.6 bits (122), Expect = 7e-09
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G++P+ C+ C F+ KS L H R H G+KP S
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ CS C ++FS KS L +H + GV P
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 48.7 bits (117), Expect = 5e-08
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C+ C K F+ K L H R+H G+KP S
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 46.0 bits (110), Expect = 4e-07
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
GVK + CS C+KTF+ K + H R+H G+KP S
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 34.8 bits (81), Expect = 0.003
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ GVKP+ CS C + F KS L H R V P
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 32.5 bits (75), Expect = 0.024
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+ C C K F+ KS L H ++H
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 31.7 bits (73), Expect = 0.047
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ + G + CSQC KTF K L H +SH+ K
Sbjct: 2 SSGSSGT----------GVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 29.0 bits (66), Expect = 0.35
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K + C QC F +K + H + H GVK S
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 29.0 bits (66), Expect = 0.36
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K + C+ C K ++ K++L H R+H
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-11
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KPF+C C +S+ QR +L H R+H G +P +
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 1e-09
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KPF C C +S+ Q+ L H R+HT KP S
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 2e-09
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KPF C C K ++++ L +H ++H G K +
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 6e-09
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +PF+C C + + L +H R+H G KP S
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K + C C K + ++ L +H R H G KP S
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 6e-07
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K F C C K++ +V +H R H G KP S
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 1e-06
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP C C +S++Q+ +L H ++ G P
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.017
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KPFKC C + + ++ L +H RV P
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.055
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
GE F C +C K++ + HL +H + H+ K
Sbjct: 9 GEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.13
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PFKC C K + ++ +L H + H
Sbjct: 12 PFKCGECGKSYNQRVHLTQHQRVH 35
Score = 29.0 bits (66), Expect = 0.34
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K F+C +C + + +H ++H G K S
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.47
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K FKC C K Y ++ LT H R H
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 57.9 bits (141), Expect = 2e-11
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KPF+C+ C +SF + NL H RIH G + +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 53.3 bits (129), Expect = 8e-10
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KPF C+ C K F K +L H +IH G K +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 52.9 bits (128), Expect = 1e-09
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 196 IHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +PF+C C F K +L H RIH G K S
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 52.9 bits (128), Expect = 1e-09
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KPF C+ C +SF K L H RIHT K S
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 47.9 bits (115), Expect = 7e-08
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K + CT C K F K +L H R H G K S
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 47.9 bits (115), Expect = 7e-08
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 308 IHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP C+ C +SF K NL H ++ G
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 44.8 bits (107), Expect = 9e-07
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K F C+ C K+F K H R H G K S
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 33.7 bits (78), Expect = 0.008
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KPF+C+ C + F K L H R+
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 32.5 bits (75), Expect = 0.024
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ + G+ F C+ C K+F K +L H + H+ K
Sbjct: 2 SSGSSGT----------GQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 32.1 bits (74), Expect = 0.030
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PF+C C K F K NL TH + H
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIH 35
Score = 28.7 bits (65), Expect = 0.54
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K F+C C K + K L H R H
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 28.3 bits (64), Expect = 0.77
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K F C C F K H +IH G K S
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-11
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++CSVC ++F+ R +L++H RIH G +P +
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 52.5 bits (127), Expect = 2e-09
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ CSVC ++F+ + L++H RIH+ KP S
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 51.0 bits (123), Expect = 5e-09
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ CS+C K FS + L+ H +IH G K +
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 51.0 bits (123), Expect = 6e-09
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 196 IHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++C+VC F+++ L+ H RIH+G KP S
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C++C K F+ + L+ H R H G KP S
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 44.8 bits (107), Expect = 8e-07
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 308 IHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ CS+C ++FS + +L +H ++ G P
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + CSVC K F+ + + H R H G KP S
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 32.1 bits (74), Expect = 0.031
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP++CS+C + F + L H R+ P
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 30.6 bits (70), Expect = 0.12
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++C +C K F+ + +L H + H
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIH 35
Score = 28.6 bits (65), Expect = 0.49
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 10/52 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ GE + CS C K F + L+ H + HS K
Sbjct: 3 SGSSGT----------GEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 26.7 bits (60), Expect = 2.6
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K ++C++C K ++ + L+ H R H
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 25.9 bits (58), Expect = 5.6
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K + C C F ++ + H +IH G K S
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 3e-11
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C VCS++FTQ+++L H + H G +P +
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 9e-10
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C VC ++FTQKA L H + HT KP S
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 1e-09
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C +C+K F++K L +H K H G K +
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 5e-09
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++C VC FT K+ L +H + H G KP S
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 8e-08
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C +C K FT+K L +H + H G KP S
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 5e-07
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C +C+++F+QK++L H K G P
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 8e-07
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C VCSK FT K +H + H G KP S
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.016
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP++C +C + F +K+ L +H + P
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.017
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 10/52 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ GE + C C K F K HL +H K+H+ K
Sbjct: 3 SGSSGT----------GEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.072
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++C +C K FT+K++L H KTH
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTH 35
Score = 28.7 bits (65), Expect = 0.60
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K ++C +C K + +K L H +TH
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 28.3 bits (64), Expect = 0.75
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K + C+ C F K +H K H G K S
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 3e-11
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KPF+C +C +SF RS LN H +H +P +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 53.3 bits (129), Expect = 9e-10
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +PF+C++C F +S LNRHS +H KP S
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 52.9 bits (128), Expect = 1e-09
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KPF C +C +SF ++ LN H +HT KP S
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 52.1 bits (126), Expect = 2e-09
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KPF C +C K F + LNRH +H K +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 49.0 bits (118), Expect = 3e-08
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K + C +C K F + LNRH H KP S
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCD 350
T KP C IC +SF +S L H + P
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 46.3 bits (111), Expect = 3e-07
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K F C +C K+F + + NRH H KP S
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 36.7 bits (86), Expect = 8e-04
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCD 407
+ G KPFKC +C + F +S L H V P
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.005
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PFKCDIC K F +S L H H
Sbjct: 12 PFKCDICGKSFCGRSRLNRHSMVH 35
Score = 32.5 bits (75), Expect = 0.020
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 10/53 (18%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ + GE F C C K+F + LNRH H+ K
Sbjct: 2 SSGSSGT----------GEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.100
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K FKC+IC K + ++RL H H
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 29.0 bits (66), Expect = 0.39
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K F+C+ C F + NRH +H K S
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 3e-11
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQC 209
+ G KPF+CS C ++F +SNL +H R H G +P
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 4e-10
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KPF CS C K F+ K +L H + H G K +
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 54.0 bits (131), Expect = 5e-10
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KPF CS C ++F K+ L +H R HT KP S
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 2e-09
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +PF+C+ C F KS+L H R H G KP S
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 49.4 bits (119), Expect = 2e-08
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K + C+ C K F K +L H R H G KP S
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 46.7 bits (112), Expect = 2e-07
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP CS C ++F+ KSNL +H + G P
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 2e-07
Identities = 16/43 (37%), Positives = 16/43 (37%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K F CS C K F K H R H G KP S
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.011
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KPF+CS C + F KS L H R P
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.011
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PF+C C K F KSNL H +TH
Sbjct: 12 PFECSECQKAFNTKSNLIVHQRTH 35
Score = 32.8 bits (76), Expect = 0.018
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 10/53 (18%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ + GE F CS+C K F K +L H ++H+ K
Sbjct: 2 SSGSSGT----------GEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.40
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K F+C+ C K + K+ L H RTH
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTH 35
Score = 28.6 bits (65), Expect = 0.48
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K F C +C+ F K H + H G K S
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 3e-11
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C C ++F Q++NL H RIH G +P +
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 1e-09
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C C K F++K +L +H +IH G K +
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 1e-09
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C C ++F QKA L H RIHT KP S
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 52.1 bits (126), Expect = 3e-09
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++C C F K++L +H RIH G KP S
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K F +K +L +H R H G KP S
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 5e-07
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C C ++F+QK+NL H ++ G P
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 43.6 bits (104), Expect = 2e-06
Identities = 14/43 (32%), Positives = 16/43 (37%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C C K F K +H R H G KP S
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.036
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP++C C + F +K+ L +H R+ P
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.061
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++C C K F +K+NL H + H
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIH 35
Score = 29.8 bits (68), Expect = 0.19
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ + GE + C +C K F K +L +H + H+ K
Sbjct: 2 SSGSSGT----------GEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.72
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K +RC +C F K +H +IH G K S
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.86
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K ++C C K +A+K LT H R H
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 4e-11
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ KP++C C + + +R NL++H R+H G + +
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 51.7 bits (125), Expect = 4e-09
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ KP+ C C + + ++ L++H R+H K S
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 51.3 bits (124), Expect = 5e-09
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
+ KP+ C C K ++R+ +L+ H ++H G K +
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 50.6 bits (122), Expect = 9e-09
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
+P++C C + + +L+ H R+H G K S
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 46.7 bits (112), Expect = 2e-07
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
K Y C C K + R+ +L+ H R H G K S
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 46.7 bits (112), Expect = 2e-07
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
+ KP+ C C + ++++ NL +H ++ G
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 43.3 bits (103), Expect = 4e-06
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
K + C C K + ++ + H R H G K S
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 34.0 bits (79), Expect = 0.006
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ KP+KC C +G+ ++ L H RV
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 33.6 bits (78), Expect = 0.009
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC+ C K + ++ NL H + H
Sbjct: 12 PYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 29.4 bits (67), Expect = 0.28
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KC C K Y R+ L H R H
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 29.0 bits (66), Expect = 0.37
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 10/52 (19%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ + E + C C K + + +L+ H + H K
Sbjct: 2 SSGSSGS----------VEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 28.6 bits (65), Expect = 0.64
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S S K ++CE C + + + H ++H G K S
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 57.3 bits (139), Expect = 4e-11
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 225 HSRIHNGIKPFLCS--MCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KPF C+ C FSR D+L+RH + H G K +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 55.8 bits (135), Expect = 2e-10
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 169 HMRAHEGIKPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KPF C+ C F++ L+ H R H G++P +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 54.6 bits (132), Expect = 4e-10
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 253 HMKIHEGSKRYLCT--MCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K + CT C F+R D+L+RH R+H G+KP S
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 54.2 bits (131), Expect = 5e-10
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 197 HLRIHDGIRPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +PF C C F+ +L+RH R H+G+KP S
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 50.0 bits (120), Expect = 1e-08
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 281 HMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KPF C+ C F++ L+ H R H+ KP S
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 45.8 bits (109), Expect = 4e-07
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 141 HMKIHDGVKVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K F C+ C F+ + +RH R+H G+KP S
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 44.6 bits (106), Expect = 1e-06
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 309 HLRIHTNSKPHACS--ICTESFSQKSNLYIHLKLQHGVNPFKCD 350
T KP AC+ C FS+ L H + GV P
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 35.7 bits (83), Expect = 0.002
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 366 HMRTVHGVKPFKCS--MCDEGFPKKSVLKEHLRVSHNVNPFKCD 407
+ G KPF C+ C F + L H R V P
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 32.7 bits (75), Expect = 0.019
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 113 HLKSHSENKVFRC--EQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K F C C + F E +RH + H GVK S
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 31.9 bits (73), Expect = 0.044
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 12/55 (21%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQ--CPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ + GE F C+ C F L+RH +SHS K
Sbjct: 2 SSGSSGT----------GEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 30.7 bits (70), Expect = 0.10
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 12/46 (26%)
Query: 55 KKFKCN--ICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCS 98
K F C C R++R + L+ H R+H G S
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHS----------GVKPSGPS 46
Score = 29.6 bits (67), Expect = 0.26
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 394 HLRVSHNVNPFKCD--ICFKLFTKKSNLRTHIKTH---EPIPCD 432
PF C C F++ L H ++H +P
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 4e-11
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQC 209
+ G KP+ CS C ++F+ +S L IH+R H G +P
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 55.6 bits (135), Expect = 1e-10
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ CS C ++F+ K+ L IH+R H+ KP S
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 54.5 bits (132), Expect = 3e-10
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ CS C K FS K L HM+ H G K +
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 52.2 bits (126), Expect = 2e-09
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P+ C+ C F++KS L H R H+G KP S
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 49.9 bits (120), Expect = 1e-08
Identities = 17/43 (39%), Positives = 19/43 (44%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C+ C K F+ K L HMR H G KP S
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 46.8 bits (112), Expect = 2e-07
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
KP+ CS C ++FS KS L IH++ G P
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 46.4 bits (111), Expect = 3e-07
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + CS C K F+ K HMR H G KP S
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 33.7 bits (78), Expect = 0.009
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ + GE + CS+C K F K +L H+++HS K
Sbjct: 2 SSGSSGA----------GEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 33.7 bits (78), Expect = 0.009
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+ CS C + F KS L H+R P
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.033
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+ C C K F+ KS L H++TH
Sbjct: 12 PYGCSECGKAFSSKSYLIIHMRTH 35
Score = 30.2 bits (69), Expect = 0.17
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K + C +C F K HM+ H G K S
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.45
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K + C+ C K ++ K+ L H+RTH
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 5e-11
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G +P +C+ C +SF Q ++L H RIH G +P +
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 1e-09
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G +P C+ C +SF Q A L H RIHT KP S
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 52.1 bits (126), Expect = 2e-09
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G +P C+ C K F + L +H +IH G K +
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 51.7 bits (125), Expect = 4e-09
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G RP +CN C F + L +H RIH G KP S
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 5e-08
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G + + C C K F + L +H R H G KP S
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 4e-07
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T +PH C+ C +SF Q ++L H ++ G P
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 2e-06
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G + C+ C K+F +H R H G KP S
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.013
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G +P KC+ C + F + + L +H R+ P
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.098
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 10/53 (18%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ + GE C++C K+F+ HL +H + H+ K
Sbjct: 2 SSGSSGT----------GERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.42
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P KC+ C K F + ++L H + H
Sbjct: 12 PHKCNECGKSFIQSAHLIQHQRIH 35
Score = 28.6 bits (65), Expect = 0.57
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + + +C +C F +H +IH G K S
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 1.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
+ KCN C K + + L H R H
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 5e-11
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C+ C + FTQ S+L H RIH G +P +
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 2e-09
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
+G KP+ C+ C K F++ L H +IH G K +
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 52.1 bits (126), Expect = 3e-09
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C+ C + FTQ + L H RIHT KP S
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 6e-09
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++CN C FT S L H RIH G KP S
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 7e-08
Identities = 16/43 (37%), Positives = 17/43 (39%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K FT+ L H R H G KP S
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 1e-06
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
+ KP+ C+ C + F+Q S+L H ++ G P
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 2e-06
Identities = 14/43 (32%), Positives = 16/43 (37%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C+ C K FT H R H G KP S
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.021
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+KC+ C + F + S L H R+ P
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 30.5 bits (70), Expect = 0.11
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 10/52 (19%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ + GE + C++C K F HL H + H+ K
Sbjct: 2 SSGSSGS----------GEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.14
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC+ C K+FT+ S+L H + H
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIH 35
Score = 29.4 bits (67), Expect = 0.29
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S S K ++C +C F H +IH G K S
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.72
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KCN C K + + + LTNH R H
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 5e-11
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G K ++C VC + F+Q S+L H R+H G +P +
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 1e-09
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 196 IHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G + ++C+VC F+ S L H R+H G KP S
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 2e-09
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G K + C VC + F+Q + L H R+HT KP S
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 49.1 bits (118), Expect = 3e-08
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G K + C +C K FS+ L H ++H G K +
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 2e-07
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 308 IHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
K + C +C + FSQ S+L H ++ G P
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 4e-07
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C +C K F++ L H R H G KP S
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 1e-05
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C VC K F+ H R H G KP S
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.007
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G K +KC +C + F + S L+ H RV P
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.021
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
+KCD+C K F++ S+L+TH + H
Sbjct: 12 CYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 29.0 bits (66), Expect = 0.39
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KC++C K +++ + L H R H
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 28.3 bits (64), Expect = 0.70
Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 10/51 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ GE + C C K F HL H + H+ K
Sbjct: 3 SGSSGM----------GEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 5e-11
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C+ C + FTQ S+L H RIH G++P +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 52.1 bits (126), Expect = 2e-09
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C+ C K F++ L H +IH G K +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 52.1 bits (126), Expect = 3e-09
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C+ C + FTQ + L H RIHT KP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 51.8 bits (125), Expect = 3e-09
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++CN C FT S L H RIH G+KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 47.9 bits (115), Expect = 7e-08
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K FT+ L H R H G+KP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 45.2 bits (108), Expect = 7e-07
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C+ C + F+Q S+L H ++ GV P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C+ C K FT H R H G+KP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 32.5 bits (75), Expect = 0.023
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+KC+ C + F + S L H R+ V P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 31.0 bits (71), Expect = 0.084
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC+ C K+FT+ S+L H + H
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIH 35
Score = 30.2 bits (69), Expect = 0.13
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 10/52 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ GE + C++C K F HL H + H+ K
Sbjct: 3 SGSSGT----------GEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 28.6 bits (65), Expect = 0.61
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K ++C +C F H +IH GVK S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 27.5 bits (62), Expect = 1.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KCN C K + + + L NH R H
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.7 bits (138), Expect = 5e-11
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KPF+C C ++F Q +L HLRIH G +P +
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 54.0 bits (131), Expect = 5e-10
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
+G KPF C C K F + L H++IH G K +
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 52.1 bits (126), Expect = 3e-09
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KPF C C ++F Q L HLRIHT KP S
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 50.6 bits (122), Expect = 8e-09
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +PF+C C F L H RIH G KP S
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 5e-08
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K + C C K F + L H+R H G KP S
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/43 (32%), Positives = 16/43 (37%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K F C C K F + H+R H G KP S
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 3e-06
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
+ KP C C ++F Q +L HL++ G P
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.020
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KPFKC C + F + L HLR+ P
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.065
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 10/52 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ GE F C +C K F HL HL+ H+ K
Sbjct: 3 SGSSGS----------GEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.14
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PFKC C K F + +L +H++ H
Sbjct: 12 PFKCKECGKAFRQNIHLASHLRIH 35
Score = 29.0 bits (66), Expect = 0.40
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S S K F+C++C F H++IH G K S
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.83
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K FKC C K + + L +HLR H
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 6e-11
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP+ C+ C ++FT RSNL H +IH +P +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 52.9 bits (128), Expect = 2e-09
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP++C+ C K F+ + +L +H KIH K +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 51.7 bits (125), Expect = 3e-09
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C+ C ++FT ++ L H +IHT KP S
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 51.4 bits (124), Expect = 4e-09
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P+ C C FT +S+L +H +IH KP S
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 49.4 bits (119), Expect = 3e-08
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y+C C K FT + +L +H + H KP S
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 45.2 bits (108), Expect = 7e-07
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C+ C ++F+ +SNL H K+ P
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 44.8 bits (107), Expect = 9e-07
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K ++C+ C K FT + +H + H KP S
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 32.1 bits (74), Expect = 0.030
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+ C+ C + F +S L +H ++ P
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 31.3 bits (72), Expect = 0.057
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+ C C K FT +SNL H K H
Sbjct: 12 PYICAECGKAFTIRSNLIKHQKIH 35
Score = 30.9 bits (71), Expect = 0.079
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ + GE + C++C K F + +L +H K H++ K
Sbjct: 2 SSGSSGT----------GEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 27.5 bits (62), Expect = 1.4
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K + C +C F ++ +H KIH K S
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 26.7 bits (60), Expect = 2.6
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K + C C K + ++ L H + H
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 6e-11
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP+ C+VC ++F ++LN HLR+H +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 53.3 bits (129), Expect = 1e-09
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C+VC ++F A LN HLR+HT S
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 53.3 bits (129), Expect = 1e-09
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C++C K F LN+H+++H +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 52.1 bits (126), Expect = 3e-09
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P+ CNVC F + LN+H R+H S
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 49.8 bits (120), Expect = 1e-08
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C +C K F LN+H+R H S
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 46.0 bits (110), Expect = 4e-07
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C+VC K F N+H+R H S
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 44.8 bits (107), Expect = 1e-06
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCD 350
T KP++C++C ++F ++L HL++
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 34.0 bits (79), Expect = 0.007
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCD 407
+ G KP+ C++C + F + L +HLRV
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 32.9 bits (76), Expect = 0.016
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ + GE ++C+ C K FV HLN+HL+ H++ +
Sbjct: 2 SSGSSGT----------GEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 29.8 bits (68), Expect = 0.22
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K + C C F + N+H+++H + S
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 29.4 bits (67), Expect = 0.28
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+ C++C K F ++L H++ H
Sbjct: 12 PYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 28.2 bits (64), Expect = 0.80
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K + CN+C K + L HLR H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 6e-11
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP +C C +SF+ S L +H RIH G P +
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 52.5 bits (127), Expect = 2e-09
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP C C +SF+ + L +H RIHT P S
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 51.8 bits (125), Expect = 3e-09
Identities = 13/43 (30%), Positives = 15/43 (34%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP C C K FS L H +IH G +
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P +C C F+ S L H RIH G P S
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 13/43 (30%), Positives = 15/43 (34%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K + C C K F+ L H R H G P S
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 46.4 bits (111), Expect = 3e-07
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KPH C C +SFS S L +H ++ G NP
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 43.7 bits (104), Expect = 3e-06
Identities = 12/43 (27%), Positives = 15/43 (34%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K C C K+F+ + H R H G P S
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 32.9 bits (76), Expect = 0.016
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP +C C + F S L H R+ NP
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 28.7 bits (65), Expect = 0.58
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P +C C K F+ S L H + H
Sbjct: 12 PHECRECGKSFSFNSQLIVHQRIH 35
Score = 27.9 bits (63), Expect = 1.1
Identities = 10/43 (23%), Positives = 14/43 (32%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K C +C F + H +IH G S
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 27.9 bits (63), Expect = 1.2
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 10/51 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ GE C +C K+F L H + H+
Sbjct: 3 SGSSGT----------GEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 25.2 bits (56), Expect = 8.7
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +C C K ++ ++L H R H
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 7e-11
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C+ C ++F RS+L IH H G +P +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 51.8 bits (125), Expect = 3e-09
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C+ C ++F ++ L IH H+ KP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 51.8 bits (125), Expect = 4e-09
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C+ C K F + L H H G K +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 51.4 bits (124), Expect = 4e-09
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++CN C F +S L H H+G KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 14/43 (32%), Positives = 15/43 (34%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K F + L H H G KP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 44.8 bits (107), Expect = 1e-06
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C+ C ++F +S+L IH G P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 43.7 bits (104), Expect = 3e-06
Identities = 12/43 (27%), Positives = 15/43 (34%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C+ C K F + H H G KP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.022
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+KC+ C + F +S L H P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.053
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC+ C K F +S+L H TH
Sbjct: 12 PYKCNECGKAFRARSSLAIHQATH 35
Score = 29.0 bits (66), Expect = 0.38
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 10/51 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ GE + C++C K F + L H +HS K
Sbjct: 3 SGSSGT----------GEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.66
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K ++C +C F + H H G K S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.82
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KCN C K + ++ L H TH
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 7e-11
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G K F+C+ C ++FTQ S+L +H RIH G +P +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 2e-09
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G K F C+ C ++FTQ + L +H RIHT KP S
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 51.7 bits (125), Expect = 3e-09
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G + F+CN C FT S L H RIH G KP S
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 51.4 bits (124), Expect = 5e-09
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G K F C+ C K F++ L H +IH G K +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 1e-07
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K + C C K FT+ L H R H G KP S
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 7e-07
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
K C+ C ++F+Q S+L +H ++ G P
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K+F C+ C KTFT H R H G KP S
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.004
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G K FKC+ C + F + S L H R+ P
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.035
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
FKC+ C K FT+ S+L H + H
Sbjct: 12 LFKCNECKKTFTQSSSLTVHQRIH 35
Score = 29.0 bits (66), Expect = 0.38
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K FKCN C K + + + LT H R H
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 28.2 bits (64), Expect = 0.65
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 10/51 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ G+ F C++C KTF L H + H+ K
Sbjct: 3 SGSSGA----------GKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.7 bits (138), Expect = 7e-11
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++CS C ++F + ++LN H RIH G RP +
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 52.9 bits (128), Expect = 1e-09
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
+G KP+ CS C K F R LN H +IH G + +
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 51.0 bits (123), Expect = 6e-09
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ CS C ++F + LN H RIHT +P S
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 51.0 bits (123), Expect = 6e-09
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++C+ C F + LN H RIH G +P S
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 48.3 bits (116), Expect = 5e-08
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C+ C K F R LN H R H G +P S
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 43.6 bits (104), Expect = 3e-06
Identities = 14/43 (32%), Positives = 16/43 (37%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + CS C K F N H R H G +P S
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 43.3 bits (103), Expect = 4e-06
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
+ KP+ CS C ++F + ++L H ++ G P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 33.2 bits (77), Expect = 0.011
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+KCS C + F + + L EH R+ P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 31.3 bits (72), Expect = 0.067
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 10/53 (18%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQ 127
+ GE + CS+C K F HLN H + H+ +
Sbjct: 3 SGSSGS----------GEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
Score = 29.4 bits (67), Expect = 0.28
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC C K F + ++L H + H
Sbjct: 12 PYKCSECGKAFHRHTHLNEHRRIH 35
Score = 28.6 bits (65), Expect = 0.51
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S S K ++C +C F+ N H +IH G + S
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 28.2 bits (64), Expect = 0.80
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KC+ C K + R L H R H
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 7e-11
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++CS C +SF ++S L++H RIH G P +
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 54.5 bits (132), Expect = 3e-10
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ CS C +SF +K+ L++H RIHT P S
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 52.5 bits (127), Expect = 2e-09
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++C+ C F KS L+ H RIH G P S
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 52.2 bits (126), Expect = 3e-09
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLC 265
G KP+ CS C K F +K L+ H +IH G
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 48.7 bits (117), Expect = 4e-08
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C+ C K F +K L+ H R H G P S
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 47.5 bits (114), Expect = 9e-08
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ CS C +SF +KS L++H ++ G NP
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 44.5 bits (106), Expect = 1e-06
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + CS C K+F K + + H R H G P S
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 34.8 bits (81), Expect = 0.004
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP++CS C + F KKS L H R+ NP
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 31.7 bits (73), Expect = 0.041
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++C C K F KKS L H + H
Sbjct: 12 PYECSDCGKSFIKKSQLHVHQRIH 35
Score = 30.2 bits (69), Expect = 0.17
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ GE + CS C K+F+ K L+ H + H+
Sbjct: 3 SGSSGT----------GEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 27.5 bits (62), Expect = 1.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K ++C+ C K + +K++L H R H
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 27.1 bits (61), Expect = 1.7
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K + C C F K + + H +IH G S
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 7e-11
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G + ++CS C ++F ++S L +H RIH G +P +
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 54.0 bits (131), Expect = 6e-10
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G + + CS C K F+RK L H +IH G K +
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 9e-10
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G + + CS C ++F +K+ L +H RIHT KP S
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 51.7 bits (125), Expect = 3e-09
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G R ++C+ C F KS L H RIH G KP S
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 50.6 bits (122), Expect = 1e-08
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G + Y C+ C K F RK L H R H G KP S
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 46.7 bits (112), Expect = 2e-07
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T + + CS C ++F++KS L +H ++ G P
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 2e-06
Identities = 14/43 (32%), Positives = 16/43 (37%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G + + CS C K F K H R H G KP S
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.027
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G + ++CS C + F +KS L H R+ P
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 30.5 bits (70), Expect = 0.11
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
++C C K F +KS L H + H
Sbjct: 12 HYECSECGKAFARKSTLIMHQRIH 35
Score = 30.2 bits (69), Expect = 0.14
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 10/51 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ GE + CS+C K F K L H + H+ K
Sbjct: 3 SGSSGT----------GERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.73
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + + + C +C F K H +IH G K S
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
+ ++C+ C K +ARK+ L H R H
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 56.4 bits (137), Expect = 7e-11
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C C ++F+Q ++L H R+H G +P +
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 1e-09
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C C K FS+ L +H ++H G K +
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 51.7 bits (125), Expect = 3e-09
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C C ++F+Q L H R+HT KP S
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 49.8 bits (120), Expect = 1e-08
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++C C F+ + L +H R+H G KP S
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 8e-08
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K F++ L +H R H G KP S
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 1e-06
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C C ++FSQ ++L H ++ G P
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 2e-06
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C C K F+ +H R H G KP S
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.026
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP++C C + F + + L +H RV P
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.13
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 10/51 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ GE + C +C K F HL +H + H+ K
Sbjct: 3 SGSSGT----------GEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.62
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 394 HLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH 426
P++C C K F++ ++L H + H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 26.7 bits (60), Expect = 2.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K ++C C K +++ L H R H
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 7e-11
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C VC ++F S+L H +H G RP +
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 51.7 bits (125), Expect = 3e-09
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++C VC F S L +H +H+G +P S
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 51.7 bits (125), Expect = 4e-09
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C +C K F L +H +H G + +
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C VC ++F + L H +H+ +P S
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 46.0 bits (110), Expect = 3e-07
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C +C K F L +H H G +P S
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 43.3 bits (103), Expect = 3e-06
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C +C ++F S+L H + G P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 43.3 bits (103), Expect = 4e-06
Identities = 12/43 (27%), Positives = 15/43 (34%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C VC K F +H H G +P S
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 30.9 bits (71), Expect = 0.087
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+KC +C + F S L +H V P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 28.6 bits (65), Expect = 0.46
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
GE + C C K F HL +H HS +
Sbjct: 9 GEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 28.2 bits (64), Expect = 0.79
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC +C K F S+L H H
Sbjct: 12 PYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 27.5 bits (62), Expect = 1.4
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K ++C+ C F V +H +H G + S
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 27.1 bits (61), Expect = 2.0
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KC +C K + + L H H
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVH 35
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 57.4 bits (138), Expect = 8e-11
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 192 SNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLN 251
+ +IH G R +C+ C I F +S L+R K +C C K ++ LN
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALN 56
Query: 252 RHMKIHEGSKRY 263
+ G K
Sbjct: 57 KDEGNESGKKTS 68
Score = 55.1 bits (132), Expect = 5e-10
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 250 LNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIH 309
+ KIH G + C+ C F R+ L+R K C C + Q+A LN
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKD 58
Query: 310 LRIHTNSKPHACS 322
+ K S
Sbjct: 59 EGNESGKKTSGPS 71
Score = 54.7 bits (131), Expect = 6e-10
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 166 FNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRH 225
+ + H G + +CS C F +RS L+ + C C ++ LN+
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKD 58
Query: 226 SRIHNGIKPF 235
+G K
Sbjct: 59 EGNESGKKTS 68
Score = 50.8 bits (121), Expect = 1e-08
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 7/71 (9%)
Query: 137 EYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNI 196
+ KIH G + CS C F + +R K C C + Q + LN
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNK 57
Query: 197 HLRIHDGIRPF 207
G +
Sbjct: 58 DEGNESGKKTS 68
Score = 42.3 bits (99), Expect = 1e-05
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 8/71 (11%)
Query: 306 LNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSL 365
+IH + CS C F ++S L C+ C + +E L+
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKC-RKDSCQEAALNK 57
Query: 366 HMRTVHGVKPF 376
G K
Sbjct: 58 DEGNESGKKTS 68
Score = 41.2 bits (96), Expect = 4e-05
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 7/71 (9%)
Query: 109 HLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNR 168
+ K H ++ +C +C F + +R K +C C K + N+
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNK 57
Query: 169 HMRAHEGIKPF 179
G K
Sbjct: 58 DEGNESGKKTS 68
Score = 40.4 bits (94), Expect = 6e-05
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 7/66 (10%)
Query: 361 TQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLR 420
+ G + KCS C F ++S L C+ C K +++ L
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALN 56
Query: 421 THIKTH 426
Sbjct: 57 KDEGNE 62
Score = 38.5 bits (89), Expect = 3e-04
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKV 150
G+ S CS+C F + S K CE+CR D + N+ G K
Sbjct: 15 GDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKT 67
Query: 151 F 151
Sbjct: 68 S 68
Score = 31.2 bits (70), Expect = 0.14
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 17/69 (24%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHL 114
+ KC+ C + R++ L+ + C +C K + LN+
Sbjct: 17 RSQKCSKCGIIFIRRSTLSRR-----------------KTPMCEKCRKDSCQEAALNKDE 59
Query: 115 KSHSENKVF 123
+ S K
Sbjct: 60 GNESGKKTS 68
Score = 30.0 bits (67), Expect = 0.34
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 8/66 (12%)
Query: 332 SNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVL 391
+ K+ G KC C F + + LS K C C + +++ L
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKC-GIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAAL 55
Query: 392 KEHLRV 397
+
Sbjct: 56 NKDEGN 61
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 56.4 bits (137), Expect = 8e-11
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G +P++C C ++F +S+L H R H G +P +
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 2e-09
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G +P+ C C ++F K+ L H R HT KP S
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 52.2 bits (126), Expect = 3e-09
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G +P+ C C K F K L H + H G K +
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 6e-09
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G RP++C C F KS L H R H G KP S
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 5e-08
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G + Y C C K F K L H R+H G KP S
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 3e-07
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T +P+ C C ++F KS+L H + G P
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G + + C C K F K H R+H G KP S
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.028
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G +P++C C + F KS L H R P
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.15
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 10/51 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ G+ + C +C K F K L H +SH+ K
Sbjct: 3 SGSSGT----------GQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.22
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++C C K F KS+L H ++H
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSH 35
Score = 27.5 bits (62), Expect = 1.5
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + + + C +C F K H + H G K S
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.6
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
+ ++C C K + K+ L H R+H
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 56.4 bits (137), Expect = 9e-11
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G+ P++CS C +SF+ + L +H R+H +P +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 53.3 bits (129), Expect = 9e-10
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G+ P+ CS C +SF+ K L +H R+HT KP S
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 49.8 bits (120), Expect = 2e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G+ P+ CS C K FS K L H ++H K +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 49.5 bits (119), Expect = 2e-08
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G+ P++C+ C F+ K L H R+H KP S
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 46.4 bits (111), Expect = 3e-07
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G Y C+ C K F+ K L H R H KP S
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 46.0 bits (110), Expect = 4e-07
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
P+ CS C +SFS K L +H ++ P
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 43.3 bits (103), Expect = 4e-06
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
GV + CS C K+F+ K++ H R H KP S
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 37.5 bits (88), Expect = 4e-04
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ GV P+KCS C++ F K L H R+ P
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 34.8 bits (81), Expect = 0.004
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC C K F+ K L H + H
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 31.7 bits (73), Expect = 0.043
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQ 127
G + CSQC K+F K L H + H+ K
Sbjct: 9 GVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
Score = 29.4 bits (67), Expect = 0.24
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
+KC+ C K ++ K RL H R H
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 27.5 bits (62), Expect = 1.4
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + ++C QC F K H ++H K S
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 56.0 bits (136), Expect = 9e-11
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KPF+C C + F++RS LN+H ++H G +P +
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 53.7 bits (130), Expect = 7e-10
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KPF C C K FSR+ LN H K+H G K +
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 53.7 bits (130), Expect = 8e-10
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KPF C C + F++++ LN+H ++HT KP S
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 52.1 bits (126), Expect = 3e-09
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +PF+C C F+ +S LN H ++H G KP S
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 49.8 bits (120), Expect = 1e-08
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K + C C K F+R+ LN H + H G KP S
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 3e-07
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP C C + FS++S L +H KL G P
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K F C C K F+ + N H + H G KP S
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KPFKC C +GF ++S L H ++ P
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.021
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PFKC C K F+++S L H K H
Sbjct: 12 PFKCVECGKGFSRRSALNVHHKLH 35
Score = 31.7 bits (73), Expect = 0.049
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 10/52 (19%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ + GE F C +C K F + LN H K H+ K
Sbjct: 2 SSGSSGT----------GEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.33
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K FKC C K ++R++ L H + H
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLH 35
Score = 27.9 bits (63), Expect = 1.2
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K F+C +C F + N H K+H G K S
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 1e-10
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C+ C ++F+ RS+L H IH G +P +
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 51.4 bits (124), Expect = 5e-09
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C+ C K FS + L H IH G K +
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 51.0 bits (123), Expect = 5e-09
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++CN C F+ +S L H IH G KP S
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 50.6 bits (122), Expect = 8e-09
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C+ C ++F+ ++ L H IHT KP S
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 47.1 bits (113), Expect = 1e-07
Identities = 14/43 (32%), Positives = 16/43 (37%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K F+ + L H H G KP S
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C+ C ++FS +S+L H + G P
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C+ C K F+ + H H G KP S
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 32.1 bits (74), Expect = 0.032
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP++C+ C + F +S L H + P
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 30.2 bits (69), Expect = 0.16
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++C+ C K F+ +S+L TH H
Sbjct: 12 PYECNQCGKAFSVRSSLTTHQAIH 35
Score = 29.0 bits (66), Expect = 0.43
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 10/52 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ GE + C+QC K F + L H H+ K
Sbjct: 3 SGSSGT----------GEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 28.3 bits (64), Expect = 0.78
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K + C QC F V+ H IH G K S
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 27.1 bits (61), Expect = 2.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K ++CN C K ++ ++ LT H H
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 1e-10
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G + ++CS C ++F Q+S L++H RIH G +P +
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 52.5 bits (127), Expect = 2e-09
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G + + CS C ++F QK+ L++H RIH KP S
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 51.8 bits (125), Expect = 4e-09
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G R ++C+ C F KS L+ H RIH G KP S
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 51.4 bits (124), Expect = 5e-09
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G + + CS C K F +K L+ H +IH G K +
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 48.3 bits (116), Expect = 6e-08
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G + Y C+ C K F +K L+ H R H G KP S
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 46.7 bits (112), Expect = 2e-07
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T + + CS C ++F QKS L +H ++ G P
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 42.9 bits (102), Expect = 5e-06
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G + + CS C K F K + H R H G KP S
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 33.7 bits (78), Expect = 0.009
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G + ++CS C + F +KS L H R+ P
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.16
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
++C C K F +KS L H + H
Sbjct: 12 HYECSECGKAFIQKSTLSMHQRIH 35
Score = 30.2 bits (69), Expect = 0.18
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ GE + CS+C K F+ K L+ H + H K
Sbjct: 3 SGSSGT----------GERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.9
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
+ ++C+ C K + +K+ L+ H R H
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIH 35
Score = 26.7 bits (60), Expect = 2.8
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + + + C +C F K + H +IH G K S
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 1e-10
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G K F+C+ C ++FT++S L++H +IH G +P +
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 1e-09
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G K F C+ C K F+RK L+ H KIH G K +
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 52.1 bits (126), Expect = 2e-09
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G K F C+ C ++FT+K+ L++H +IHT KP S
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 52.1 bits (126), Expect = 3e-09
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G + F+C C FT KS L+ H +IH G KP S
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 49.4 bits (119), Expect = 2e-08
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K + CT C K FTRK L+ H + H G KP S
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 46.7 bits (112), Expect = 2e-07
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T K C+ C ++F++KS L +H K+ G P
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K F C+ C K FT K + H + H G KP S
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.011
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 364 SLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G K F+C+ C + F +KS L H ++ P
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.026
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 10/54 (18%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQ 127
+ + G F C++C K F K L+ H K H+ K
Sbjct: 2 SSGSSGT----------GGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 32.1 bits (74), Expect = 0.035
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
F+C C K FT+KS L H K H
Sbjct: 12 HFECTECGKAFTRKSTLSMHQKIH 35
Score = 29.0 bits (66), Expect = 0.36
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K F+C C K + RK+ L+ H + H
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIH 35
Score = 27.9 bits (63), Expect = 1.00
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K F C +C F K + H KIH G K S
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 1e-10
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C C + + +R +L+ H R+H G + +
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 53.7 bits (130), Expect = 7e-10
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
+G KP+ C C K + R+ DL+ H ++H G K +
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 52.9 bits (128), Expect = 1e-09
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C C + + ++ L+ H R+HT K S
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 51.4 bits (124), Expect = 5e-09
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++C C + + DL+ H R+H G K S
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 49.8 bits (120), Expect = 1e-08
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K + R+ DL+ H R H G K S
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 45.2 bits (108), Expect = 8e-07
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCD 350
+ KP+ C C + + ++ +L H ++ G
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 41.7 bits (99), Expect = 1e-05
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C C K + ++ + H R H G K S
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCD 407
+ G KP+KC C +G+ ++ L H RV
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 31.7 bits (73), Expect = 0.046
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC C K + ++ +L H + H
Sbjct: 12 PYKCVECGKGYKRRLDLDFHQRVH 35
Score = 30.2 bits (69), Expect = 0.13
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ + GE + C +C K + + L+ H + H+ K+
Sbjct: 2 SSGSSGS----------GEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 28.7 bits (65), Expect = 0.48
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KC C K Y R+ L H R H
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 26.7 bits (60), Expect = 2.2
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S S K ++C +C + + + + H ++H G K+ S
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.9 bits (136), Expect = 1e-10
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C C + F + S+L H IH G +P +
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 54.0 bits (131), Expect = 6e-10
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C C K F R L RH IH G K +
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 50.9 bits (123), Expect = 6e-09
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C C + F + + L H IHT KP S
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 50.9 bits (123), Expect = 7e-09
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++C+ C F S L RH IH G KP S
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 48.6 bits (117), Expect = 5e-08
Identities = 16/43 (37%), Positives = 16/43 (37%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K F R L RH H G KP S
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/43 (30%), Positives = 14/43 (32%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C C K F RH H G KP S
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 44.0 bits (105), Expect = 2e-06
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C C + F + S+L H + G P
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.044
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+KC C + F + S L H + P
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.073
Identities = 12/53 (22%), Positives = 16/53 (30%), Gaps = 10/53 (18%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQ 127
+ GE + C +C K F HL RH H+ K
Sbjct: 3 SGSSGT----------GEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45
Score = 29.8 bits (68), Expect = 0.22
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K ++C +C F RH IH G K S
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.27
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC C K+F + S+L H H
Sbjct: 12 PYKCHECGKVFRRNSHLARHQLIH 35
Score = 27.8 bits (63), Expect = 1.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KC+ C K + R + L H H
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 1e-10
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C+ C ++F+Q S L H RIH G +P +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 2e-09
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C+ C K FS+ L RH +IH G K +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 51.8 bits (125), Expect = 3e-09
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C+ C ++F+Q + L H RIHT KP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 51.8 bits (125), Expect = 3e-09
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++CN C F+ S L RH RIH G KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 6e-08
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K F++ L RH R H G KP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C+ C ++FSQ S L H ++ G P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 3e-06
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C+ C K F+ K RH R H G KP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.020
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+KC+ C + F + S L H R+ P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.23
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 10/53 (18%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ + GE + C++C K F L RH + H+ K
Sbjct: 2 SSGSSGT----------GEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.26
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC+ C K F++ S L H + H
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIH 35
Score = 29.0 bits (66), Expect = 0.35
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K ++C +C F + RH +IH G K S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 2.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KCN C K +++ ++L H R H
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 55.7 bits (135), Expect = 1e-10
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP+ C C +SF S L H R+H G +P +
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 52.2 bits (126), Expect = 2e-09
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP++C C +SF + L H R+H+ KP S
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 52.2 bits (126), Expect = 3e-09
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C C K F L +H ++H G K +
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 49.5 bits (119), Expect = 2e-08
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P+ C C F S L +H R+H+G KP S
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 47.2 bits (113), Expect = 1e-07
Identities = 15/43 (34%), Positives = 16/43 (37%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K F L +H R H G KP S
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 44.9 bits (107), Expect = 1e-06
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C C +SF S L H ++ G P
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 43.3 bits (103), Expect = 4e-06
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C C K+F +H R H G KP S
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.014
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+ C C + F S L +H RV P
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.16
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 10/53 (18%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQ 127
+ GE + C +C K+F L +H + HS K
Sbjct: 3 SGSSGT----------GEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 28.7 bits (65), Expect = 0.56
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+ C C K F S L H + H
Sbjct: 12 PYNCKECGKSFRWASCLLKHQRVH 35
Score = 28.3 bits (64), Expect = 0.63
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K + C++C F +H ++H G K S
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 55.6 bits (135), Expect = 1e-10
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQC 209
+ G KP++C+ C ++F +S L +H R H G+
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 54.1 bits (131), Expect = 5e-10
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHAC 321
+ G KP+ C+ C ++F K+LL +H R H +
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 51.0 bits (123), Expect = 7e-09
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLC 265
+G KP+ C+ C K F K L H + H G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 48.7 bits (117), Expect = 4e-08
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLC 237
G +P++CN C F KS L H R H G+
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 46.0 bits (110), Expect = 3e-07
Identities = 13/42 (30%), Positives = 14/42 (33%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHC 293
G K Y C C K F K L H R H G+
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 45.6 bits (109), Expect = 5e-07
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
+ KP+ C+ C ++F KS L +H + GV+
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 42.1 bits (100), Expect = 7e-06
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQC 181
G K + C+ C K F K H R H G+
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 34.0 bits (79), Expect = 0.006
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP++C+ C + F KS+L H R V+
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 31.7 bits (73), Expect = 0.041
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++C+ C K F KS L H +TH
Sbjct: 12 PYECNECGKAFIWKSLLIVHERTH 35
Score = 29.4 bits (67), Expect = 0.31
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ + GE + C++C K F+ K L H ++H+
Sbjct: 2 SSGSSGS----------GEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 28.3 bits (64), Expect = 0.69
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K ++CN C K + K+ L H RTH
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTH 35
Score = 27.1 bits (61), Expect = 2.0
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLC 153
S S K + C +C F K H + H GV
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 1e-10
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP+ C C ++F + L H RIH G +P +
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 54.1 bits (131), Expect = 6e-10
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
+G KP++C C K F +L RH +IH G K +
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 51.7 bits (125), Expect = 3e-09
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P+ C+ C F ++L RH RIH G KP S
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 51.7 bits (125), Expect = 4e-09
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C C ++F A L H RIHT KP S
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 49.4 bits (119), Expect = 2e-08
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y+C C K F +L RH R H G KP S
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K ++C C K F + RH R H G KP S
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
+ KP+ C C ++F + L H ++ G P
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.054
Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 10/53 (18%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQ 127
+ GE + C C K F L RH + H+ K
Sbjct: 3 SGSSGS----------GEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 31.3 bits (72), Expect = 0.064
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+ C C + F + L H R+ P
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.16
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S S K + C+ C F + E RH +IH G K S
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.24
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+ CD C K F + L H + H
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIH 35
Score = 26.7 bits (60), Expect = 2.5
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K + C+ C K + L H R H
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIH 35
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 1e-10
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C VC +SF S+L +H RIH G +P +
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 51.4 bits (124), Expect = 5e-09
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++C+VC+ F S L H RIH G KP S
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 6e-09
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C VC +SF + L +H RIHT KP S
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 49.8 bits (120), Expect = 2e-08
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C +C K F L H +IH G K +
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 46.7 bits (112), Expect = 2e-07
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C +C +SF S+L +H ++ G P
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 4e-07
Identities = 15/42 (35%), Positives = 16/42 (38%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C +C K F L H R H G KP S
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 1e-05
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C VC K+F H R H G KP S
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.007
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+KC +C + F S L H R+ P
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.048
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KCD+C K F S+L H + H
Sbjct: 12 PYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 27.9 bits (63), Expect = 1.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KC++C K + + LT H R H
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 27.1 bits (61), Expect = 1.9
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K ++C+ C F H +IH G K S
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 2.5
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 10/51 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ GE + C C K+F L H + H+ K
Sbjct: 3 SGSSGT----------GEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 55.6 bits (135), Expect = 1e-10
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G K ++C C F+Q S+L +H +H G +P +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 52.9 bits (128), Expect = 1e-09
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G K + C C F+Q + L +H +H KP S
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 50.6 bits (122), Expect = 9e-09
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G K + C C CFS+ L H +H G K +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 49.8 bits (120), Expect = 2e-08
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G + ++C C +CF+ S L H +H G KP S
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 47.2 bits (113), Expect = 1e-07
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K + C C CF++ L H H G KP S
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 44.1 bits (105), Expect = 2e-06
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
K C C FSQ S+L +H + G P
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 42.1 bits (100), Expect = 9e-06
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C C F+ H H G KP S
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 36.4 bits (85), Expect = 0.001
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G K +KC CD F + S L+ H V P
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.003
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
+KC C F++ S+LR H H
Sbjct: 12 TWKCRECDMCFSQASSLRLHQNVH 35
Score = 30.2 bits (69), Expect = 0.16
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQ 127
GE ++ C +C F L H H K
Sbjct: 9 GEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 28.7 bits (65), Expect = 0.60
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KC C +++ + L H H
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVH 35
Score = 27.9 bits (63), Expect = 1.0
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S K ++C +C F H +H G K S
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 58.4 bits (140), Expect = 1e-10
Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 14/125 (11%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYIC----FTNKSDLN 223
+++ H+GI V E H + R + V + ++S
Sbjct: 12 KYLSNHKGIF---IHVTLEEL-----KRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYL 63
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMR 283
I F+C +C FS L +H++ E +K C +C K FT D H+
Sbjct: 64 YRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHVC 121
Query: 284 NHDGL 288
+
Sbjct: 122 KKHNI 126
Score = 49.9 bits (118), Expect = 1e-07
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 360 ETQLSLHMRTVHGVKPFKC----SMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTK 415
E H T + + + + +S L S ++ F C +C F+
Sbjct: 27 EELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSS 86
Query: 416 KSNLRTHIKTHE-PIPCDKCPEIFEKKTDLQEHVDKCHNL 454
+L+ HI+ E C C + F +HV K HN+
Sbjct: 87 SVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 49.2 bits (116), Expect = 2e-07
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 2/98 (2%)
Query: 107 KWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKF 166
++H + + + + Y + + F+C +C F+ V
Sbjct: 31 RYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSL 90
Query: 167 NRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGI 204
+H+R E C VC + FT + H+ I
Sbjct: 91 KQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 46.1 bits (108), Expect = 2e-06
Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 6/126 (4%)
Query: 219 KSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDL 278
S ++ H GI + + R L K + P+ +
Sbjct: 7 DSGSKKYLSNHKGIF---IHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQ-LLDESSY 62
Query: 279 NRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHL 338
+ + F C +C F+ L H+R ++K C +C + F+ + H+
Sbjct: 63 LYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHV 120
Query: 339 KLQHGV 344
+H +
Sbjct: 121 CKKHNI 126
Score = 38.8 bits (89), Expect = 0.001
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 12/68 (17%)
Query: 50 GKKMVKKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWH 109
K + +F C +C ++ L H+R E + C C K F
Sbjct: 68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYT------------EHTKVCPVCKKEFTSTDS 115
Query: 110 LNRHLKSH 117
H+
Sbjct: 116 ALDHVCKK 123
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 2e-10
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP+ C C ++F S L H RIH G +P +
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 51.8 bits (125), Expect = 3e-09
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C C K F L H +IH G K +
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 51.8 bits (125), Expect = 4e-09
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP++C C ++F + L H RIHT KP S
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P+ C C F + S L H RIH G KP S
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 15/43 (34%), Positives = 15/43 (34%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K F L H R H G KP S
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 1e-06
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C C ++F S L H ++ G P
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 44.1 bits (105), Expect = 2e-06
Identities = 13/43 (30%), Positives = 15/43 (34%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C C K F + H R H G KP S
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 33.7 bits (78), Expect = 0.009
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+ C C + F S L+EH R+ P
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.095
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+ C+ C K F S L+ H + H
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIH 35
Score = 28.6 bits (65), Expect = 0.47
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K + CE+C F + H +IH G K S
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.75
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 10/52 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ GE + C +C K F+ L H + H+ K
Sbjct: 3 SGSSGT----------GEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.8
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K + C C K + ++L H R H
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 55.6 bits (135), Expect = 2e-10
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G K ++C+ C + F++ S L+ H +IH G +P +
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 52.1 bits (126), Expect = 2e-09
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G K + C+ C K FSR L++H KIH G K +
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 51.4 bits (124), Expect = 5e-09
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G + ++CN C F+ S L++H +IH G KP S
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 6e-09
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G K + C+ C + F++ + L+ H +IHT KP S
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 8e-08
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G KRY C C K F+R L++H + H G KP S
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T K + C+ C + FS+ S L H K+ G P
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C+ C K F+ + ++H + H G KP S
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.016
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G K +KC+ C + F + S L +H ++ P
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.25
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
+KC+ C K+F++ S L H K H
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIH 35
Score = 29.4 bits (67), Expect = 0.25
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K ++C +C F + ++H KIH G K S
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.30
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 10/52 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ GE + C++C K F L++H K H+ K
Sbjct: 3 SGSSGT----------GEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.60
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K++KCN C K ++R ++L+ H + H
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 2e-10
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C+ C + FTQ S+L H IH G +P +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 1e-09
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C+ C K F++ L RH IH G K +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 51.3 bits (124), Expect = 4e-09
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++CN C FT S L RH IH G KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 50.6 bits (122), Expect = 9e-09
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C+ C + FTQ + L H IHT KP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 8e-08
Identities = 16/43 (37%), Positives = 17/43 (39%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K FT+ L RH H G KP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 43.6 bits (104), Expect = 2e-06
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C+ C + F+Q S+L H + G P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 43.6 bits (104), Expect = 3e-06
Identities = 14/43 (32%), Positives = 16/43 (37%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C+ C K FT RH H G KP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.092
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+KC+ C + F + S L H + P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 30.5 bits (70), Expect = 0.11
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 10/53 (18%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ + GE + C++C K F HL RH H+ K
Sbjct: 2 SSGSSGT----------GEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.22
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC+ C K+FT+ S+L H H
Sbjct: 12 PYKCNECGKVFTQNSHLVRHRGIH 35
Score = 28.6 bits (65), Expect = 0.64
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K ++C +C F RH IH G K S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 27.8 bits (63), Expect = 1.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KCN C K + + + L H H
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 2e-10
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C+ C + F S L+ H RIH G +P +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 52.1 bits (126), Expect = 2e-09
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C+ C K F L+RH +IH G K +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 51.7 bits (125), Expect = 4e-09
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++CN C F + S L+RH RIH G KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 50.6 bits (122), Expect = 8e-09
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C+ C + F + L+ H RIHT KP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 1e-07
Identities = 16/43 (37%), Positives = 17/43 (39%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K F L+RH R H G KP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 2e-06
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C+ C + F S L H ++ G P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 4e-06
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C+ C K F +RH R H G KP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.019
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+KC+ C + F S L H R+ P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.078
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC+ C K+F S L H + H
Sbjct: 12 PYKCNECGKVFRHNSYLSRHQRIH 35
Score = 29.4 bits (67), Expect = 0.28
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 10/53 (18%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ + GE + C++C K F +L+RH + H+ K
Sbjct: 2 SSGSSGT----------GEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.33
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K ++C +C F +RH +IH G K S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.78
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KCN C K + + L+ H R H
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 2e-10
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G +PF+C+ C + F +RS+L HLR+H + +
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 51.0 bits (123), Expect = 7e-09
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G +PF C+ C + F +++ L HLR+H+ K S
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
+G +PF C+ C K F R+ L H+++H K +
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 49.8 bits (120), Expect = 2e-08
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G RPF+CN C F +S L H R+H+ K S
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 46.4 bits (111), Expect = 3e-07
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G + + C C K F R+ L H+R H K S
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 42.5 bits (101), Expect = 7e-06
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
+ +P C+ C + F ++S+L HL+L
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 42.1 bits (100), Expect = 1e-05
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G + F C+ C K F + H+R H K S
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 33.7 bits (78), Expect = 0.008
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 368 RTVH-GVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G +PFKC+ C +GF ++S L HLR+
Sbjct: 4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 33.3 bits (77), Expect = 0.010
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
GE F C++C K F + HL HL+ HS K
Sbjct: 9 GERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 32.9 bits (76), Expect = 0.018
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PFKC+ C K F ++S+L H++ H
Sbjct: 12 PFKCNECGKGFGRRSHLAGHLRLH 35
Score = 31.0 bits (71), Expect = 0.091
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
+ FKCN C K + R++ L HLR H
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 28.7 bits (65), Expect = 0.57
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S S + F+C +C F + H+++H K S
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 55.2 bits (134), Expect = 2e-10
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQC 209
+ G KP++C+ C ++F +SNL +H R H G
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 51.7 bits (125), Expect = 3e-09
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 196 IHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLC 237
G +P++CN C F KS+L H R H G
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 50.9 bits (123), Expect = 5e-09
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLC 265
G KP+ C+ C K F+ K +L H + H G
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 50.6 bits (122), Expect = 8e-09
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHAC 321
+ G KP+ C+ C ++F K+ L +H R HT +
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 48.6 bits (117), Expect = 5e-08
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 308 IHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C+ C ++F+ KSNL +H + G +
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 46.3 bits (111), Expect = 2e-07
Identities = 13/41 (31%), Positives = 14/41 (34%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHC 293
G K Y C C K F K +L H R H G
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 41.3 bits (98), Expect = 2e-05
Identities = 11/41 (26%), Positives = 13/41 (31%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQC 181
G K + C+ C K F K H R H G
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 33.2 bits (77), Expect = 0.012
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++C+ C K F KSNL H +TH
Sbjct: 12 PYECNECQKAFNTKSNLMVHQRTH 35
Score = 32.5 bits (75), Expect = 0.020
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP++C+ C + F KS L H R +
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 30.9 bits (71), Expect = 0.080
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ GE + C++C K F K +L H ++H+
Sbjct: 3 SGSSGT----------GEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 29.4 bits (67), Expect = 0.29
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K ++CN C K + K+ L H RTH
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTH 35
Score = 25.5 bits (57), Expect = 6.5
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLC 153
S + K + C +C+ F K H + H G
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 55.2 bits (134), Expect = 2e-10
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQC 209
+ G KPF+C+ C +SF+ S L H RIH G +P
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 8e-10
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KPF C+ C +SF+ + L H RIHT KP S
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 9e-10
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KPF C+ C K FS L H +IH G K +
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 51.3 bits (124), Expect = 4e-09
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +PF+C C F+ S L H RIH G KP S
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 7e-08
Identities = 14/43 (32%), Positives = 16/43 (37%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K + C C K F+ L H R H G KP S
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 46.3 bits (111), Expect = 3e-07
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP C+ C +SFS S L H ++ G P
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K F C+ C K+F+ + H R H G KP S
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.025
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KPF+C+ C + F S L H R+ P
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.061
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PF+C C K F+ S L TH + H
Sbjct: 12 PFECAECGKSFSISSQLATHQRIH 35
Score = 29.8 bits (68), Expect = 0.22
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 10/52 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ GE F C++C K+F L H + H+ K
Sbjct: 3 SGSSGT----------GEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.40
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K F C +C F + + H +IH G K S
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K F+C C K ++ ++L H R H
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 2e-10
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C C ++F Q +LN H R+H G R +
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 51.4 bits (124), Expect = 5e-09
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C C ++F Q LN H R+HT + S
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLC 265
+G KP+ C C K F + LN+H ++H G +
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 48.3 bits (116), Expect = 5e-08
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++C C F LN+H R+H G + S
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 45.2 bits (108), Expect = 8e-07
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K F + LN+H R H G + S
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 42.1 bits (100), Expect = 1e-05
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C C KTF N+H R H G + S
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 41.8 bits (99), Expect = 1e-05
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
+ KP+ C C ++F Q +L H ++ G
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 34.1 bits (79), Expect = 0.005
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQ 127
G+ + C +C KTF+ HLN+H + H+ +
Sbjct: 9 GKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 30.6 bits (70), Expect = 0.12
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP++C C + F + L +H RV
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 30.6 bits (70), Expect = 0.12
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++C C K F + +L H + H
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVH 35
Score = 28.3 bits (64), Expect = 0.68
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S S K + C++CR F N+H ++H G + S
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 28.3 bits (64), Expect = 0.77
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K ++C C K + + L H R H
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVH 35
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 55.3 bits (134), Expect = 2e-10
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHL-RIHDGIRPFQCNVCYICFTN 218
+ KP+ C C + F++ +LN H+ ++H RP +C V ++
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 55.3 bits (134), Expect = 2e-10
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMK-IHEGSKRYLCTMCPKCFT 273
+ KP++C C K FSR D LN H+K +H + + C + +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 52.6 bits (127), Expect = 2e-09
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHL-RIHTNSKPHACSICTESFSQ 330
+ KP+ C C + F++ LN H+ ++HT+ +PH C + S
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 51.0 bits (123), Expect = 8e-09
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHS-RIHNGIKPFLCSMCAKCFS 245
+P+ C C F+ LN H ++H +P C + S
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 50.3 bits (121), Expect = 2e-08
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRN-HDGLKPFHCSVCFESFTQ 302
K Y+C C K F+R D LN H++ H +P C V +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 46.4 bits (111), Expect = 3e-07
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQH-GVNPFKCDVC 352
+ KP+ C C + FS+ +L H+K H P KC V
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 43.7 bits (104), Expect = 3e-06
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRA-HEGIKPFQCSVCSESFTQ 190
K ++C C K F+ N H++ H +P +C V +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 41.4 bits (98), Expect = 2e-05
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 372 GVKPFKCSMCDEGFPKKSVLKEHLRVSHN-VNPFKCDICFKLFT 414
KP+ C C +GF + L H++ H P KC + +
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMK-IHDGVKVFLCSVCSKTFTD 162
S S K + C+ C F N H+K +H + C V +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 35.6 bits (83), Expect = 0.002
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKS-HSENKVFRCEQC 128
+ C C K F HLN H+K H+ + +C+
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 32.9 bits (76), Expect = 0.022
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 403 PFKCDICFKLFTKKSNLRTHIK-TH---EPIPCDKCPEIF 438
P+ C C K F++ +L HIK H P C
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 31.8 bits (73), Expect = 0.051
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 11/51 (21%)
Query: 55 KKFKCNICPKRYARKNRLTNHL-RTHEAGSGDEKSEGGEGSFTCSQCPKTF 104
K + C C K ++R + L H+ + H E C
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHT----------SERPHKCQVWVSGP 51
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 2e-10
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G+KP+ C+ C ++F+ S+L H IH G +P +
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 51.8 bits (125), Expect = 3e-09
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLC 265
G+KP++C+ C K FS L H IH G K
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 7e-09
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G++P+ CN C F+ S L H IH G KP S
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G+KP+ C+ C ++F+ + L H IHT KP S
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 9e-08
Identities = 14/43 (32%), Positives = 16/43 (37%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y+C C K F+ L H H G KP S
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 3e-06
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
GVK ++C+ C K F+ H H G KP S
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 4e-06
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C+ C ++FS S+L H + G P
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.030
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ GVKP+ C+ C + F S L H + P
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.16
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+ C+ C K F+ S+L TH H
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIH 35
Score = 29.0 bits (66), Expect = 0.44
Identities = 12/43 (27%), Positives = 15/43 (34%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K + C +C F V H IH G K S
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.3
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 10/53 (18%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ + G + C++C K F L H H+ K
Sbjct: 2 SSGSSGT----------GVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K + CN C K ++ + LT H H
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 2e-10
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ EG KP+QCS C +SF+ L H H +P +
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ +G KP+ CS C +SF+ L H HT KP S
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 49.5 bits (119), Expect = 2e-08
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ CS C K FS L +H H K +
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 47.9 bits (115), Expect = 7e-08
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
+G +P+QC+ C F+ L +H H KP S
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 45.6 bits (109), Expect = 5e-07
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
EG K Y C+ C K F+ L +H H KP S
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 42.5 bits (101), Expect = 7e-06
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
+G K + CS C K+F+ + +H H KP S
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 42.1 bits (100), Expect = 8e-06
Identities = 11/41 (26%), Positives = 13/41 (31%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
KP+ CS C +SFS L H P
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 32.5 bits (75), Expect = 0.026
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP++CS C + F L +H P
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 31.0 bits (71), Expect = 0.087
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++C C K F+ L H TH
Sbjct: 12 PYQCSECGKSFSGSYRLTQHWITH 35
Score = 29.4 bits (67), Expect = 0.25
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
GE + CS+C K+F + L +H +H+ K
Sbjct: 9 GEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 29.4 bits (67), Expect = 0.28
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K ++C+ C K ++ RLT H TH
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITH 35
Score = 26.4 bits (59), Expect = 3.7
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S K ++C +C F +H H K S
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 2e-10
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQC 209
+ G KP++C+ C ++FT RSNL H +IH G +P
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 2e-09
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++C C FT++S+L H +IH G KP S
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 52.1 bits (126), Expect = 2e-09
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLC 265
G KP+ C+ C K F+ + +L H KIH G K
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 51.7 bits (125), Expect = 4e-09
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C+ C ++FT ++ L H +IHT KP S
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K FT + +L H + H G KP S
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 46.3 bits (111), Expect = 3e-07
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C+ C ++F+ +SNL+ H K+ G P
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 2e-06
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C+ C K FTD+ H + H G KP S
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.007
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++C C K FT +SNL TH K H
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIH 35
Score = 32.1 bits (74), Expect = 0.034
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP++C+ C + F +S L H ++ P
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.14
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ GE + C++C K F D+ +L H K H+ K
Sbjct: 3 SGSSGT----------GEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.9
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K +RC +C F + H KIH G K S
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 2.2
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K ++C C K + ++ L H + H
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 2e-10
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G P++C C ++F+++ L H R H G +P +
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 52.5 bits (127), Expect = 2e-09
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G P+ C C K FSRK L H + H G K +
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 52.1 bits (126), Expect = 3e-09
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G P+ C C ++F++K L H R H KP S
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G P++C+ C F+ K L H R H G KP S
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 48.3 bits (116), Expect = 6e-08
Identities = 16/43 (37%), Positives = 17/43 (39%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G Y C C K F+RK L H R H G KP S
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 44.8 bits (107), Expect = 1e-06
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T P+ C C ++FS+K L H + G P
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G + C C K F+ K + H R H G KP S
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.018
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G P++C C + F +K L H R P
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.064
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 394 HLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH 426
NP++C C K F++K L +H +TH
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 29.8 bits (68), Expect = 0.20
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
++C+ C K ++RK +L +H RTH
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTH 35
Score = 29.8 bits (68), Expect = 0.24
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ GE + C +C K F K+ L H ++H+ K
Sbjct: 3 SGSSGT----------GENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 2e-10
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
+G +P+ C+ C K F R L H+K H K +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 51.4 bits (124), Expect = 4e-09
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G +P+ C+ C ++F + S+L HL+ H + +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 51.4 bits (124), Expect = 4e-09
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G RP+ CN C F S L H + H K S
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 50.6 bits (122), Expect = 8e-09
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G + Y C C K F R L H++ H K S
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G +P+ C+ C ++F + + L HL+ H K S
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 42.9 bits (102), Expect = 5e-06
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G + + C+ C K F H++ H K S
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 41.3 bits (98), Expect = 2e-05
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
+ +P+ C+ C ++F + S+L HLK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 35.6 bits (83), Expect = 0.002
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
GE + C++C K F HL HLK H K
Sbjct: 9 GERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 32.1 bits (74), Expect = 0.028
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G +P+ C+ C + F + S L EHL+
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 30.9 bits (71), Expect = 0.075
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 10/44 (22%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCS 98
+ + CN C K + R + L HL+ H E S S
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRH----------FREKSSGPS 44
Score = 30.2 bits (69), Expect = 0.14
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+ C+ C K F + S+L H+K H
Sbjct: 12 PYGCNECGKNFGRHSHLIEHLKRH 35
Score = 29.8 bits (68), Expect = 0.23
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S S + + C +C +F H+K H K S
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 3e-10
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G K + C C +SF++ L H R+H G +P +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 51.8 bits (125), Expect = 3e-09
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G K + C C K FSR L +H ++H G K +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 51.0 bits (123), Expect = 6e-09
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G + + C C F+ L +H R+H+G KP S
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 51.0 bits (123), Expect = 6e-09
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G K ++C C +SF++ L H R+H+ KP S
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 47.9 bits (115), Expect = 7e-08
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K F+R L +H R H G KP S
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 46.0 bits (110), Expect = 3e-07
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T K + C C +SFS+ L H +L G P
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 42.5 bits (101), Expect = 7e-06
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K++ C C K+F+ +H R H G KP S
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.016
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G K + C C + F + L +H R+ P
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.17
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 10/52 (19%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ + GE + C +C K+F L +H + HS K
Sbjct: 2 SSGSSGT----------GEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.32
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
+ C C K F++ L H + H
Sbjct: 12 LYNCKECGKSFSRAPCLLKHERLH 35
Score = 27.5 bits (62), Expect = 1.3
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K++ C++C F +H ++H G K S
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.5
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K + C C K ++R L H R H
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 3e-10
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP+ C+ C +SF Q+S+LN H RIH G +P +
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 51.7 bits (125), Expect = 3e-09
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C+ C +SF QK+ LN H RIHT KP S
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 51.7 bits (125), Expect = 3e-09
Identities = 19/42 (45%), Positives = 21/42 (50%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P+ CN C F KS LNRH RIH G KP S
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 51.7 bits (125), Expect = 4e-09
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP++C+ C K F +K LNRH +IH G K +
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 6e-08
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y+C C K F +K LNRH R H G KP S
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 9e-07
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C+ C +SF QKS+L H ++ G P
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K ++C+ C K+F K NRH R H G KP S
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.012
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ GE + C++C K+F+ K HLNRH + H+ K
Sbjct: 3 SGSSGT----------GEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.016
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+ C+ C + F +KS L H R+ P
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.065
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+ C+ C K F +KS+L H + H
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIH 35
Score = 29.4 bits (67), Expect = 0.31
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K + CN C K + +K+ L H R H
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIH 35
Score = 28.2 bits (64), Expect = 0.65
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K + C +C F K NRH +IH G K S
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 54.9 bits (133), Expect = 3e-10
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP +C+ C ++F +S L +H R H + +
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 52.6 bits (127), Expect = 2e-09
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP C+ C ++F K+ L +H R H + K S
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 49.5 bits (119), Expect = 2e-08
Identities = 12/43 (27%), Positives = 15/43 (34%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP C+ C K F K L H + H K +
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P +C C F KS L H R H K S
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 46.8 bits (112), Expect = 2e-07
Identities = 14/43 (32%), Positives = 14/43 (32%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K CT C K F K L H R H K S
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 44.5 bits (106), Expect = 1e-06
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP C+ C ++F KS L +H +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 42.5 bits (101), Expect = 7e-06
Identities = 12/43 (27%), Positives = 14/43 (32%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K C+ C K F K + H R H K S
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 33.3 bits (77), Expect = 0.010
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP KC+ C + F KS L H R +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 33.3 bits (77), Expect = 0.010
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P KC C K F KS L H +TH
Sbjct: 12 PCKCTECGKAFCWKSQLIMHQRTH 35
Score = 31.4 bits (72), Expect = 0.053
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
GE C++C K F K L H ++H ++K
Sbjct: 9 GEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 30.6 bits (70), Expect = 0.12
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K KC C K + K++L H RTH
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 28.3 bits (64), Expect = 0.64
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K +C +C F K + H + H K S
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 3e-10
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KPF C C ++F+ LN H RIH G +P +
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 52.1 bits (126), Expect = 3e-09
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +PF C C F++ LN+H RIH G KP S
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 51.7 bits (125), Expect = 4e-09
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KPF C C K FS LN+H +IH G K +
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 51.4 bits (124), Expect = 4e-09
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KPF C C ++F+ LN H RIHT KP S
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K + C C K F+ LN+H R H G KP S
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 1e-06
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K F C C K F+D + N+H R H G KP S
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 44.0 bits (105), Expect = 2e-06
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP C C ++FS L H ++ G P
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.016
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KPF C C + F L +H R+ P
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.070
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 10/52 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ GE F C C K F D LN+H + H+ K
Sbjct: 3 SGSSGT----------GEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.14
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PF C C K F+ L H + H
Sbjct: 12 PFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 28.3 bits (64), Expect = 0.76
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K F C C K ++ L H R H
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 27.9 bits (63), Expect = 1.2
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K F C C F N+H +IH G K S
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 54.8 bits (133), Expect = 3e-10
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQC 209
+ G+KP+ C+ C ++F +S L IH R H G
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 52.5 bits (127), Expect = 2e-09
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHAC 321
+ G+KP+ C+ C ++F K+ L IH R HT +
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 50.9 bits (123), Expect = 6e-09
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLC 265
G+KP++C+ C K F K L H + H G
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 48.6 bits (117), Expect = 4e-08
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLC 237
G++P+ CN C F +KS L H+R H G
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 13/42 (30%), Positives = 14/42 (33%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHC 293
G K Y+C C K F K L H R H G
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C+ C ++F KS L IH + G +
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 42.1 bits (100), Expect = 9e-06
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQC 181
G+K ++C+ C K F K H R H G
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 32.1 bits (74), Expect = 0.029
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G+KP+ C+ C + F KS L H R +
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 31.7 bits (73), Expect = 0.036
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+ C+ C K F KS L H +TH
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTH 35
Score = 30.1 bits (69), Expect = 0.14
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 10/52 (19%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ + G + C++C K F K +L H ++H+
Sbjct: 2 SSGSSGT----------GMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 29.0 bits (66), Expect = 0.39
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K + CN C K + K+ L H RTH
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 26.3 bits (59), Expect = 3.9
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLC 153
S + K + C +C F K H + H G
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 3e-10
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP+ C+ C ++F+Q+S L+ H R H G +P +
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 51.8 bits (125), Expect = 3e-09
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 196 IHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P+ CN C F+ KS L+ H R H G KP S
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 51.4 bits (124), Expect = 5e-09
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C+ C ++F+QK++L+ H R HT KP S
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 7e-09
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
+G KP+ C+ C K FS+K L+ H + H G K +
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 1e-07
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 308 IHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
+ KP+ C+ C ++FSQKS L H + G P
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 2e-07
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K F++K L+ H R H G KP S
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 6e-06
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C+ C KTF+ K + H R H G KP S
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.015
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+ C+ C + F +KS+L H R P
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.025
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 10/53 (18%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQ 127
+ GE + C++C KTF K L+ H ++H+ K
Sbjct: 3 SGSSGS----------GEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSS 45
Score = 31.7 bits (73), Expect = 0.048
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+ C+ C K F++KS L H +TH
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRTH 35
Score = 29.8 bits (68), Expect = 0.18
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K + CN C K +++K+ L+ H RTH
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTH 35
Score = 28.3 bits (64), Expect = 0.84
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S S K + C +C F K + H + H G K S
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 3e-10
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C VC ++F+ ++L H R+H G +P +
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 51.4 bits (124), Expect = 5e-09
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 196 IHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++C+VC F++ + L +H R+H+G KP S
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 49.4 bits (119), Expect = 2e-08
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C +C K FS L +H ++H G K +
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 49.0 bits (118), Expect = 3e-08
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C VC ++F+ A L H R+H+ KP S
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 45.2 bits (108), Expect = 7e-07
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C +C K F+ L +H R H G KP S
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 44.4 bits (106), Expect = 1e-06
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 308 IHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C +C ++FS ++L H ++ G P
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 42.1 bits (100), Expect = 9e-06
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C VC K F+ +H R H G KP S
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.046
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP++C +C + F + L +H RV P
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.31
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++CD+C K F+ ++L H + H
Sbjct: 12 PYECDVCRKAFSHHASLTQHQRVH 35
Score = 28.6 bits (65), Expect = 0.47
Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 10/52 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ GE + C C K F L +H + HS K
Sbjct: 3 SGSSGT----------GEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K ++C++C K ++ LT H R H
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVH 35
Score = 26.3 bits (59), Expect = 4.1
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K + C+ CR F +H ++H G K S
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 54.5 bits (132), Expect = 3e-10
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C C + F R +L H +H G +P +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 51.4 bits (124), Expect = 4e-09
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++C C F + DL H +H G KP S
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 6e-09
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C C K F + DL H +H G K +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C C + F + L H +HT KP S
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 1e-07
Identities = 15/42 (35%), Positives = 16/42 (38%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K F + DL H H G KP S
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 1e-06
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C C + F + +LY H + G P
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 41.8 bits (99), Expect = 1e-05
Identities = 12/42 (28%), Positives = 14/42 (33%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C C K F + H H G KP S
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+KC C +GF + L H V P
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.056
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC+ C K F + +L TH H
Sbjct: 12 PYKCEECGKGFICRRDLYTHHMVH 35
Score = 29.8 bits (68), Expect = 0.21
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 10/53 (18%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ + GE + C +C K F+ + L H H+ K
Sbjct: 2 SSGSSGT----------GEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.89
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KC C K + + L H H
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVH 35
Score = 27.9 bits (63), Expect = 1.00
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K ++CE+C F +R+ H +H G K S
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 5e-10
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP+QC+ C ++F+Q S L H R+H G +P +
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 52.2 bits (126), Expect = 3e-09
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 196 IHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P+QCN C F+ S L RH R+H G KP S
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C+ C K FS+ L RH ++H G K +
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 49.1 bits (118), Expect = 3e-08
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C+ C ++F+Q + L H R+HT KP S
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 5e-07
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K F++ L RH R H G KP S
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 6e-07
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 308 IHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C+ C ++FSQ S L H ++ G P
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C+ C K F+ K RH R H G KP S
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.027
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP++C+ C + F + S L H RV P
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.43
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 10/52 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ G + C++C K F L RH + H+ K
Sbjct: 3 SGSSGT----------GGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.46
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++C+ C K F++ S L H + H
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVH 35
Score = 26.7 bits (60), Expect = 3.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K ++CN C K +++ ++L H R H
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVH 35
Score = 26.3 bits (59), Expect = 3.1
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K ++C +C F + RH ++H G K S
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 5e-10
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C+ C ++F SNL H IH G +P +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 6e-09
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C+ C K F +L H IH G K +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++CN C F S+L H IH G KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 49.0 bits (118), Expect = 4e-08
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C+ C ++F + L H IHT KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 3e-07
Identities = 14/42 (33%), Positives = 15/42 (35%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K F +L H H G KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 3e-06
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C+ C ++F SNL H + G P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 41.3 bits (98), Expect = 2e-05
Identities = 12/42 (28%), Positives = 14/42 (33%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C+ C K F H H G KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.059
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+KC+ C + F S L H + P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.077
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC+ C K F SNL TH H
Sbjct: 12 PYKCNECGKAFRAHSNLTTHQVIH 35
Score = 28.2 bits (64), Expect = 0.73
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 10/52 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ GE + C++C K F +L H H+ K
Sbjct: 3 SGSSGT----------GEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.98
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KCN C K + + LT H H
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 27.5 bits (62), Expect = 1.4
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K ++C +C F H IH G K S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 54.1 bits (131), Expect = 5e-10
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KPF+C C + F S H R H G +P +
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 50.6 bits (122), Expect = 9e-09
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KPF C C + F + H R H+ KP S
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 49.9 bits (120), Expect = 1e-08
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
+G KPF C C K F H + H G K +
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 49.9 bits (120), Expect = 1e-08
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +PF+C C F S H R H+G KP S
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 46.4 bits (111), Expect = 2e-07
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K + C C K F H R+H G KP S
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 44.9 bits (107), Expect = 1e-06
Identities = 10/42 (23%), Positives = 13/42 (30%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCD 350
+ KP C C + F S Y H + G P
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 41.4 bits (98), Expect = 1e-05
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K F C C K F + H R+H G KP S
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 34.5 bits (80), Expect = 0.004
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCD 407
+ G KPFKC C +GF S H R P
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.018
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PFKC+ C K F S +H ++H
Sbjct: 12 PFKCEECGKGFYTNSQCYSHQRSH 35
Score = 31.8 bits (73), Expect = 0.042
Identities = 12/53 (22%), Positives = 16/53 (30%), Gaps = 10/53 (18%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ + GE F C +C K F H +SHS K
Sbjct: 2 SSGSSGS----------GEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 29.1 bits (66), Expect = 0.43
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K FKC C K + ++ +H R+H
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 27.9 bits (63), Expect = 0.91
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S S K F+CE+C FY + H + H G K S
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 54.1 bits (131), Expect = 5e-10
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ K C C FT K+ LN H RIHT KP S
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 53.7 bits (130), Expect = 8e-10
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQC 209
+ K QC C FT +S+LN H RIH G +P
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 5e-09
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
+ QC+ C FT KS LN+H RIH G KP S
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 50.6 bits (122), Expect = 8e-09
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
+ K C C + F+ K LN+H +IH G K +
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 8e-08
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
+K + C C + FT K LN+H R H G KP S
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 4e-06
Identities = 14/43 (32%), Positives = 16/43 (37%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
K C C + FT K N+H R H G KP S
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 41.8 bits (99), Expect = 1e-05
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
+++K H C C F+ KS+L H ++ G P
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.015
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRV 397
+ K +C C GF KS L +H R+
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI 34
Score = 31.4 bits (72), Expect = 0.055
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSH 117
S C +C + F K HLN+H + H
Sbjct: 9 STKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 31.4 bits (72), Expect = 0.059
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
+C C + FT KS+L H + H
Sbjct: 12 SHQCHECGRGFTLKSHLNQHQRIH 35
Score = 31.0 bits (71), Expect = 0.083
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S S K +C +C F +K N+H +IH G K S
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 29.1 bits (66), Expect = 0.34
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +C+ C + + K+ L H R H
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIH 35
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 54.1 bits (131), Expect = 6e-10
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 171 RAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
G KPF CS C ++F+ +S L +H + H +P +
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 51.0 bits (123), Expect = 6e-09
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 285 HDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
G KPF CS C ++F+ K+ L +H + H KP S
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 48.3 bits (116), Expect = 5e-08
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 226 SRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
S +G KPF CS C K FS K L H + H K +
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 47.9 bits (115), Expect = 7e-08
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 199 RIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +PF C+ C F++KS L H + H KP S
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 46.0 bits (110), Expect = 4e-07
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 255 KIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K + C+ C K F+ K L H + H KP S
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 311 RIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
+ KP CS C ++FS KS L +H + P
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 41.8 bits (99), Expect = 1e-05
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 143 KIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K F CS C K F+ K H + H KP S
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 34.4 bits (80), Expect = 0.004
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 372 GVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
G KPF CS C++ F KS L H + P
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 33.7 bits (78), Expect = 0.009
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PF C C K F+ KS L H +TH
Sbjct: 10 PFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 32.1 bits (74), Expect = 0.025
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
GE F CS C K F K +L H ++H+E K
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 31.4 bits (72), Expect = 0.048
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K F C+ C K ++ K+ L H +TH
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 26.0 bits (58), Expect = 4.8
Identities = 11/40 (27%), Positives = 12/40 (30%)
Query: 115 KSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S K F C C F K H + H K S
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 53.7 bits (130), Expect = 6e-10
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G + +CS C + F Q SN H RIH G +P +
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 1e-09
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G + CS C + F Q + H RIHT KP S
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 49.1 bits (118), Expect = 3e-08
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G R +C+ C F S+ +H RIH G KP S
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
+G + CS C K F + + +H +IH G K +
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 44.5 bits (106), Expect = 1e-06
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G + + C+ C K F + + +H R H G KP S
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 3e-06
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
+ H CS C + F Q SN H ++ G P
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 8e-06
Identities = 14/43 (32%), Positives = 16/43 (37%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G + CS C K F F +H R H G KP S
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.025
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRV 397
+ HG + +CS C + F + S +H R+
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRI 34
Score = 32.1 bits (74), Expect = 0.027
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
+C C K F + SN H + H
Sbjct: 12 GHRCSDCGKFFLQASNFIQHRRIH 35
Score = 27.5 bits (62), Expect = 1.2
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + RC C F + +H +IH G K S
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.4
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
+ +C+ C K + + + H R H
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 27.5 bits (62), Expect = 1.6
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 10/52 (19%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
+ + GE CS C K F+ + +H + H+ K
Sbjct: 2 SSGSSGH----------GERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 7e-10
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C+ C + FTQ S+L H IH G +P +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 51.3 bits (124), Expect = 5e-09
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++CN C FT S L RH IH G KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 50.6 bits (122), Expect = 8e-09
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C+ C K F++ L RH IH G K +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C+ C + FTQ + L H IHT KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 5e-07
Identities = 16/42 (38%), Positives = 17/42 (40%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K FT+ L RH H G KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 4e-06
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C+ C + F+Q S+L H + G P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 1e-05
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C+ C K FT RH H G KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.078
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+KC+ C + F + S L H + P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.090
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 10/52 (19%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ GE + C++C K F HL RH H+ K
Sbjct: 3 SGSSGT----------GEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.25
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC+ C K+FT+ S+L H H
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIH 35
Score = 27.9 bits (63), Expect = 1.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KCN C K + + + L H H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIH 35
Score = 27.5 bits (62), Expect = 1.6
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K ++C +C F RH IH G K S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 7e-10
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C+ C + FTQ S+L H IH G +P +
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 6e-09
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++CN C FT S L RH IH G KP S
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 50.6 bits (122), Expect = 8e-09
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C+ C K F++ L RH IH G K +
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 5e-08
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C+ C + FTQ + L H IHT KP S
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 5e-07
Identities = 16/42 (38%), Positives = 17/42 (40%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K FT+ L RH H G KP S
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C+ C + F+Q S+L H + G P
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 41.3 bits (98), Expect = 2e-05
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C+ C K FT RH H G KP S
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.061
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+KC+ C + F + S L H + P
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.067
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
G+ + C++C K F HL RH H+ K
Sbjct: 9 GKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.33
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC+ C K+FT+ S+L H H
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIH 35
Score = 27.9 bits (63), Expect = 1.2
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K ++C +C F RH IH G K S
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KCN C K + + + L H H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIH 35
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 53.5 bits (129), Expect = 7e-10
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIH 257
+R GIKPF C C + FSR D L H K H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 46.2 bits (110), Expect = 2e-07
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNH 285
+ G K + C C + F+R D L H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 45.0 bits (107), Expect = 6e-07
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIH 201
R GIKPFQC C SF++ +L +H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 40.4 bits (95), Expect = 3e-05
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIH 229
R GI+PFQC C F+ L H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 38.9 bits (91), Expect = 9e-05
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLK 339
R T KP C C SFS+ +L +H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 38.9 bits (91), Expect = 1e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIH 313
R G+KPF C C SF++ L +H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 36.2 bits (84), Expect = 0.001
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 394 HLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH 426
R S + PF+C C + F++ +L H K H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 35.4 bits (82), Expect = 0.002
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 54 VKKFKCNICPKRYARKNRLTNHLRTH 79
+K F+C C + ++R + L H + H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 33.5 bits (77), Expect = 0.010
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAH 173
+ G+K F C C ++F+ H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 33.1 bits (76), Expect = 0.010
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLR 396
R G+KPF+C CD F + L H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 31.2 bits (71), Expect = 0.056
Identities = 11/43 (25%), Positives = 13/43 (30%), Gaps = 10/43 (23%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSH 117
R G F C C ++F HL H K H
Sbjct: 2 STRGST----------GIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.1 bits (63), Expect = 0.82
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 337 HLKLQHGVNPFKCDVCPNETFEKETQLSLHMRT 369
+ G+ PF+C C + +F + L+LH +
Sbjct: 2 STRGSTGIKPFQCPDC-DRSFSRSDHLALHRKR 33
Score = 25.0 bits (55), Expect = 7.8
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
+ + K F+C C F H K H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 53.7 bits (130), Expect = 7e-10
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPF 207
+ G KP+ C +C F L HLRIH G P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 50.6 bits (122), Expect = 7e-09
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
+ G KP+ C +C F L HLRIHT S P +
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 49.8 bits (120), Expect = 2e-08
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRY 263
S G KP+ C +C F L H++IH GS
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPF 291
G K Y C +C F L H+R H G P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 42.5 bits (101), Expect = 6e-06
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPF 235
G +P+ C +C F + L H RIH G P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 40.9 bits (97), Expect = 2e-05
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPF 179
G K + C +C F H+R H G P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 38.6 bits (91), Expect = 1e-04
Identities = 9/30 (30%), Positives = 10/30 (33%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHL 338
KP+ C IC F L HL
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31
Score = 37.5 bits (88), Expect = 4e-04
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+ C+IC F L++H++ H
Sbjct: 11 PYPCEICGTRFRHLQTLKSHLRIH 34
Score = 35.6 bits (83), Expect = 0.002
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRV 397
+ G KP+ C +C F LK HLR+
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI 33
Score = 32.1 bits (74), Expect = 0.028
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K + C IC R+ L +HLR H
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 31.3 bits (72), Expect = 0.047
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 10/43 (23%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSH 117
+ GGE + C C F L HL+ H
Sbjct: 2 SSGSS----------GGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 27.1 bits (61), Expect = 1.9
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 346 PFKCDVCPNETFEKETQLSLHMRTVHGVKPF 376
P+ C++C F L H+R G P
Sbjct: 11 PYPCEIC-GTRFRHLQTLKSHLRIHTGSGPS 40
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 53.7 bits (130), Expect = 7e-10
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPF 207
+ G KP++C C F Q ++L H+ IH G P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 49.4 bits (119), Expect = 2e-08
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
+ G KP+ C C F Q A L H+ IHT S P +
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 49.1 bits (118), Expect = 3e-08
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRY 263
S G KP+ C C F + L H+ IH GS
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 44.1 bits (105), Expect = 1e-06
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPF 235
G +P++C C F + L H IH G P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 44.1 bits (105), Expect = 2e-06
Identities = 11/39 (28%), Positives = 13/39 (33%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPF 291
G K Y C C F + L H+ H G P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 39.0 bits (92), Expect = 1e-04
Identities = 9/39 (23%), Positives = 11/39 (28%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPF 179
G K + C C F H+ H G P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 38.3 bits (90), Expect = 2e-04
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIH 337
KP+ C C F Q ++L H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH 30
Score = 36.7 bits (86), Expect = 7e-04
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC+ C F + ++LR H+ H
Sbjct: 11 PYKCETCGARFVQVAHLRAHVLIH 34
Score = 34.8 bits (81), Expect = 0.003
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRV 397
+ G KP+KC C F + + L+ H+ +
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI 33
Score = 31.0 bits (71), Expect = 0.067
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KC C R+ + L H+ H
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIH 34
Score = 30.6 bits (70), Expect = 0.11
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 10/43 (23%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSH 117
+ GGE + C C FV HL H+ H
Sbjct: 2 SSGSS----------GGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 27.1 bits (61), Expect = 1.9
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 346 PFKCDVCPNETFEKETQLSLHMRTVHGVKPF 376
P+KC+ C F + L H+ G P
Sbjct: 11 PYKCETC-GARFVQVAHLRAHVLIHTGSGPS 40
Score = 27.1 bits (61), Expect = 2.0
Identities = 10/37 (27%), Positives = 13/37 (35%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVK 149
S K ++CE C F H+ IH G
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSG 38
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.4 bits (129), Expect = 8e-10
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQC 209
+ G KPFQC C +F+ +L HLR H+ P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 49.1 bits (118), Expect = 3e-08
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KPF C C +F+ L HLR H + P S
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 47.6 bits (114), Expect = 1e-07
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLC 265
G KPF C C FS L +H++ HE +
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 45.7 bits (109), Expect = 5e-07
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K + C C F+ L +H+R+H+ P S
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 45.7 bits (109), Expect = 6e-07
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +PFQC C + F+ L +H R H P S
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 42.6 bits (101), Expect = 6e-06
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K F C C F+ +H+R+HE P S
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 39.5 bits (93), Expect = 7e-05
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCD 350
T KP C C +FS +L+ HL+ +P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 34.5 bits (80), Expect = 0.004
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PF+C C F+ +L H+++H
Sbjct: 12 PFQCKECGMNFSWSCSLFKHLRSH 35
Score = 31.8 bits (73), Expect = 0.046
Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 10/53 (18%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQ 127
+ GE F C +C F L +HL+SH
Sbjct: 3 SGSSGT----------GEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 31.4 bits (72), Expect = 0.057
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCD 407
+ G KPF+C C F L +HLR +P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 29.1 bits (66), Expect = 0.34
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K F+C C ++ L HLR+H
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 28.7 bits (65), Expect = 0.55
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K F+C++C +F +H++ H+ S
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 53.3 bits (129), Expect = 9e-10
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPF 207
+ G KP++C C ++F+Q+ +L +H+R+H G P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 52.2 bits (126), Expect = 2e-09
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
+ G KP+ C C ++F+QK L +H+R+HT S P +
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 51.0 bits (123), Expect = 5e-09
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRY 263
S G KP+ C C K FS+K L H+++H GS
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 47.9 bits (115), Expect = 6e-08
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPF 235
G +P++C+ C F+ K L H R+H G P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 45.3 bits (108), Expect = 6e-07
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPF 291
G K Y C C K F++K L H+R H G P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 44.1 bits (105), Expect = 2e-06
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPF 347
KP+ C C ++FSQK +L +H+++ G P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 39.9 bits (94), Expect = 4e-05
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPF 179
G K + C C K F+ K H+R H G P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 34.5 bits (80), Expect = 0.004
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 394 HLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH 426
S P++CD C K F++K +L HI+ H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 34.1 bits (79), Expect = 0.005
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRV 397
+ G KP++C C + F +K L H+RV
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV 33
Score = 31.0 bits (71), Expect = 0.070
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSH 117
+ GGE + C QC K F K L H++ H
Sbjct: 2 SSGSS----------GGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 28.3 bits (64), Expect = 0.62
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K ++C+ C K +++K L H+R H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 26.4 bits (59), Expect = 3.7
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVK 149
S K +RC+QC F K H+++H G
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSG 38
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.4 bits (129), Expect = 9e-10
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C C ++F S+ H R+H G RP +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 49.9 bits (120), Expect = 1e-08
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++C C F + S +H R+H G +P S
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 49.5 bits (119), Expect = 2e-08
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C C K F +H ++H G + +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 48.0 bits (115), Expect = 8e-08
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C C ++F + H R+HT +P S
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 45.6 bits (109), Expect = 6e-07
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K F +H R H G +P S
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 44.5 bits (106), Expect = 1e-06
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C C ++F S+ H +L G P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 41.8 bits (99), Expect = 1e-05
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C C K F D +H R H G +P S
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 32.9 bits (76), Expect = 0.014
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+KC C + F S +H R+ P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 29.5 bits (67), Expect = 0.26
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 10/53 (18%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ + GE + C +C K F D +H + H+ +
Sbjct: 2 SSGSSGT----------GEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 29.1 bits (66), Expect = 0.40
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 394 HLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH 426
P+KC C K F S+ H + H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 27.9 bits (63), Expect = 0.98
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K ++C +C F +H ++H G + S
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 27.2 bits (61), Expect = 1.9
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KC C K + + T H R H
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 9e-10
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G KP++C+ C + FTQ S+L H R+H G +P +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 50.6 bits (122), Expect = 9e-09
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G +P++CN C FT S L RH R+H G KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
G KP+ C+ C K F++ L RH ++H G K +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G KP+ C+ C + FTQ + L H R+HT KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 46.0 bits (110), Expect = 4e-07
Identities = 17/42 (40%), Positives = 18/42 (42%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K Y C C K FT+ L RH R H G KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 42.9 bits (102), Expect = 4e-06
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T KP+ C+ C + F+Q S+L H ++ G P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K + C+ C K FT RH R H G KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 32.1 bits (74), Expect = 0.032
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G KP+KC+ C + F + S L H RV P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 30.6 bits (70), Expect = 0.11
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
GE + C++C K F HL RH + H+ K
Sbjct: 9 GEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 29.4 bits (67), Expect = 0.25
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC+ C K+FT+ S+L H + H
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVH 35
Score = 27.9 bits (63), Expect = 1.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K +KCN C K + + + L H R H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVH 35
Score = 26.7 bits (60), Expect = 2.5
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S + K ++C +C F RH ++H G K S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 53.1 bits (128), Expect = 1e-09
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPF 207
+ G P+ C C +SFTQR +L +H R P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 50.7 bits (122), Expect = 7e-09
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
+ G P+ C C +SFTQ+ L +H R + S P +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 46.5 bits (111), Expect = 2e-07
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
S G P+LC C K F+++ L H + S
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
Score = 44.2 bits (105), Expect = 2e-06
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPF 235
G P+ C C FT + L H R + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 43.8 bits (104), Expect = 2e-06
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPF 291
G YLC C K FT++ L H R+ P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 38.8 bits (91), Expect = 1e-04
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPF 179
G +LC C K+FT + H R+ P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 37.3 bits (87), Expect = 5e-04
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIH 337
P+ C C +SF+Q+ +L +H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
Score = 36.9 bits (86), Expect = 5e-04
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 84 GDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENK 121
G S GGE + C QC K+F + L H +S S++
Sbjct: 1 GSSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
Score = 32.6 bits (75), Expect = 0.022
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+ C C K FT++ +L H ++
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 30.7 bits (70), Expect = 0.085
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRV 397
+ G P+ C C + F ++ L H R
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRS 33
Score = 26.9 bits (60), Expect = 2.3
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
+ C C K + ++ L H R+
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSC 34
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 52.8 bits (126), Expect = 2e-09
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 262 RYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSK 317
+Y+C C + L +H+R H ++P+HC+ C SF K L H++ +SK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 51.3 bits (122), Expect = 7e-09
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 153 CSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
C C +H+R H ++P+ C+ C+ SF + NL H++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 50.1 bits (119), Expect = 2e-08
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
+ C C I S L +H R H ++P+ C+ C F K +L +HMK SK+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 48.2 bits (114), Expect = 1e-07
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 179 FQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIK 233
+ C C + S L H+R H +RP+ C C F K +L +H + K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 47.0 bits (111), Expect = 3e-07
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 237 CSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLK 289
C C + L +H++ H + Y CT C F K +L +HM++ K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 45.9 bits (108), Expect = 6e-07
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVK 149
+ C +C L +H+++H++ + + C C F F K +HMK K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 45.5 bits (107), Expect = 8e-07
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 56 KFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLK 115
K+ C C R + + L H+RTH + C+ C +F K +L +H+K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHT----------DVRPYHCTYCNFSFKTKGNLTKHMK 50
Query: 116 SHSENK 121
S + +K
Sbjct: 51 SKAHSK 56
Score = 42.0 bits (98), Expect = 1e-05
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHG 343
+ C C + ++L H+R HT+ +P+ C+ C SF K NL H+K +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 42.0 bits (98), Expect = 1e-05
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 123 FRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIK 177
+ CE+C +H++ H V+ + C+ C+ +F K +HM++ K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 40.5 bits (94), Expect = 5e-05
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 376 FKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH 426
+ C C K S+LK+H+R +V P+ C C F K NL H+K+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 36.6 bits (84), Expect = 0.001
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 347 FKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRV 397
+ C+ C +K + L H+RT V+P+ C+ C+ F K L +H++
Sbjct: 2 YICEEC-GIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 35.8 bits (82), Expect = 0.002
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 321 CSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVK 374
C C + S L H++ V P+ C C N +F+ + L+ HM++ K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYC-NFSFKTKGNLTKHMKSKAHSK 56
Score = 33.9 bits (77), Expect = 0.009
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 404 FKCDICFKLFTKKSNLRTHIKTH---EPIPCDKCPEIFEKKTDLQEHV 448
+ C+ C K S L+ HI+TH P C C F+ K +L +H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 26.6 bits (58), Expect = 4.5
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
+ + C C + K LT H+++
Sbjct: 28 RPYHCTYCNFSFKTKGNLTKHMKSK 52
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 50.6 bits (122), Expect = 9e-09
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLR-IHDGIRPFQCN 210
+ G KP++C C ++F Q ++L H R H G +P +
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 47.2 bits (113), Expect = 1e-07
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHM-KIHEGSKRYLCT 266
G KP+ C C K F + L RH H G K +
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 46.8 bits (112), Expect = 2e-07
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSR-IHNGIKPFLCS 238
G +P++C C F + L RH R H G KP S
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 46.8 bits (112), Expect = 2e-07
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLR-IHTNSKPHACS 322
+ G KP+ C C ++F Q L H R HT KP S
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 46.0 bits (110), Expect = 4e-07
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQH-GVNPFKC 349
T KP+ C C ++F Q ++L H + H G P
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 45.6 bits (109), Expect = 6e-07
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRN-HDGLKPFHCS 294
G K Y C C K F + L RH R H G KP S
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 39.5 bits (93), Expect = 7e-05
Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRA-HEGIKPFQCS 182
G K + C C K F RH R H G KP S
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 32.9 bits (76), Expect = 0.015
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHN-VNPFKC 406
+ G KP++C C + F + + L H R H P
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 27.9 bits (63), Expect = 0.93
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 11/53 (20%)
Query: 74 NHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKS-HSENKVFRC 125
+ + G+ + C +C K F+ L RH + H+ K
Sbjct: 2 SSGSSGT----------GKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 26.0 bits (58), Expect = 5.7
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 403 PFKCDICFKLFTKKSNLRTH 422
P++C C K F + ++L H
Sbjct: 12 PYECIECGKAFIQNTSLIRH 31
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 49.8 bits (120), Expect = 2e-08
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQC 209
+ G P++C C + F+++ L H + H G
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 47.9 bits (115), Expect = 7e-08
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLC 265
G P+ C C K FSRKD L H K H G
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 47.5 bits (114), Expect = 9e-08
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHAC 321
+ G P+ C C + F++K L H + H+ +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLC 237
G P++C C F+ K L H + H+G
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHC 293
G Y C C K F+RKD L H + H G
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 41.7 bits (99), Expect = 1e-05
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T P+ C C + FS+K L H K G +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 36.7 bits (86), Expect = 8e-04
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQC 181
G + C C K F+ K + H + H G
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 31.3 bits (72), Expect = 0.049
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++C C K+F++K L +H KTH
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTH 35
Score = 29.4 bits (67), Expect = 0.26
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
++C C K ++RK++L +H +TH
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTH 35
Score = 29.0 bits (66), Expect = 0.36
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
+ G P++C C + F +K L H + +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 27.8 bits (63), Expect = 1.1
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
GE + C +C K F K L H K+HS
Sbjct: 9 GENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 49.4 bits (119), Expect = 2e-08
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 171 RAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQC 209
G P++CS C ++F ++ L H R H G
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 47.1 bits (113), Expect = 1e-07
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 226 SRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLC 265
S +G P+ CS C K F+RKD L H + H G
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 46.4 bits (111), Expect = 2e-07
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 283 RNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHAC 321
G P+ CS C ++F +K L H R H +
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 44.0 bits (105), Expect = 2e-06
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 199 RIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLC 237
G P++C+ C F K L H R H G
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 42.9 bits (102), Expect = 4e-06
Identities = 14/39 (35%), Positives = 15/39 (38%)
Query: 255 KIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHC 293
G Y C+ C K F RKD L H R H G
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 42.1 bits (100), Expect = 9e-06
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 311 RIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
+ P+ CS C ++F++K L H + G +
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/39 (28%), Positives = 13/39 (33%)
Query: 143 KIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQC 181
G + CS C K F K + H R H G
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 30.9 bits (71), Expect = 0.083
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P++C C K F +K L +H +TH
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTH 33
Score = 30.2 bits (69), Expect = 0.13
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 368 RTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKC 406
G P++CS C + F +K L H R +
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 28.6 bits (65), Expect = 0.43
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
++C+ C K + RK++L +H RTH
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTH 33
Score = 28.2 bits (64), Expect = 0.62
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRC 125
GE + CS+C K F K L H ++H+
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 47.6 bits (114), Expect = 9e-08
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ G K C C ++F + L IH R+H K S
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 47.6 bits (114), Expect = 1e-07
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
+ G K C C ++F S L IH R+H G + +
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 46.0 bits (110), Expect = 4e-07
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
+G K C C K F L H ++H G K +
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 44.5 bits (106), Expect = 1e-06
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
G + C+ C F S L H R+H G K S
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 42.6 bits (101), Expect = 6e-06
Identities = 13/42 (30%), Positives = 14/42 (33%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
G K + C C K F L H R H G K S
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 41.4 bits (98), Expect = 2e-05
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCD 350
+ K H C C ++F S L IH ++ G
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 38.7 bits (91), Expect = 1e-04
Identities = 12/42 (28%), Positives = 12/42 (28%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
G K C C K F H R H G K S
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 31.8 bits (73), Expect = 0.043
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRV 397
+ G K C C + F S L+ H RV
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV 34
Score = 30.6 bits (70), Expect = 0.095
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
CD C K F S LR H + H
Sbjct: 12 SHTCDECGKNFCYISALRIHQRVH 35
Score = 27.6 bits (62), Expect = 1.5
Identities = 12/36 (33%), Positives = 14/36 (38%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
GE S TC +C K F L H + H K
Sbjct: 9 GEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 27.2 bits (61), Expect = 1.8
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
S S K C++C +F H ++H G K S
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 26.0 bits (58), Expect = 4.9
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K C+ C K + + L H R H
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVH 35
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 1e-07
Identities = 47/230 (20%), Positives = 65/230 (28%), Gaps = 81/230 (35%)
Query: 384 GFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKS---NLRTHIKTHEPIPCDKCPEIFEK 440
GF S+L + N NP I F K N I K +IF+
Sbjct: 1658 GF---SILD----IVIN-NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK- 1708
Query: 441 KTDLQEHVDKCHNLHEEDEEEGLDEFDAPKEKSFNCSKCLNIVRIPVEIKSLVEKLTSEG 500
++ EH F + K L+ T
Sbjct: 1709 --EINEHSTSYT-------------FRSEKGL-------LS--------------ATQFT 1732
Query: 501 VPAVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVGAGLNHHS--ELDA 558
PA L ++ LK + L DA AG HS E A
Sbjct: 1733 QPA----------------LTLMEKAAFEDLKSKGLIPADATF----AG---HSLGEY-A 1768
Query: 559 AIYSHSSIFFDSEAA----ARGELKGLYEQVPANMVG-EVGGLIAANLTR 603
A+ S + + RG + VP + +G G+IA N R
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMT--MQVAVPRDELGRSNYGMIAINPGR 1816
Score = 38.1 bits (88), Expect = 0.009
Identities = 49/321 (15%), Positives = 88/321 (27%), Gaps = 107/321 (33%)
Query: 327 SFSQKSNLYIH---LKLQHGVNPFKCDV-CPNETF----EKETQLSLHMR----TVHGVK 374
+ + L+ Q F + P E F E T L + V+
Sbjct: 19 VLLVPTASFFIASQLQEQ-----FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 375 PFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRT---HIKTHEPIPC 431
P K D+ VL L F+ + + +++ +
Sbjct: 74 PSKVGQFDQ------VLNLCL------TEFENC-----YLEGNDIHALAAKLLQENDTTL 116
Query: 432 DKCPEI----FEKKTDLQEHVDKCHN--LHEEDE----------------EEGLDE---- 465
K E+ + + DK N L ++ +E
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 466 FDAPKE--KSF--NCSKCL-NIVRIPVEIKSLVEKLTSEGVPAVQAYEHGEDAARDADIL 520
+ ++ L ++R ++ EK+ ++G+ + + D D L
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLD----AEKVFTQGLN-ILEWLENPSNTPDKDYL 231
Query: 521 VTATYSSVPVLKYEWLKKKDAH--INAVGAGLNHHSELDAAIYSHSSIFFDSEAAARGEL 578
++ S P++ L AH + A G EL R L
Sbjct: 232 LSIPI-SCPLIGVIQL----AHYVVTAKLLGFT-PGEL------------------RSYL 267
Query: 579 KGLYEQVPANMVGEVGGLIAA 599
KG G GL+ A
Sbjct: 268 KGA--------TGHSQGLVTA 280
Score = 31.6 bits (71), Expect = 1.1
Identities = 28/149 (18%), Positives = 41/149 (27%), Gaps = 52/149 (34%)
Query: 171 RAHEGIKPFQCSVCSESFTQRSNLNIH------LRIHDGIRPFQCNVCYICFTNKSDLNR 224
R +E + + S + S N L I + Q Y+ TN L
Sbjct: 309 RCYEA---YPNTSLPPSILEDSLENNEGVPSPMLSIS-NLTQEQVQ-DYVNKTNSH-LPA 362
Query: 225 HSRIH----NGIKPF--------LCSMCAKCFSRK----DDLNRHMKIHEGSKRYLCTMC 268
++ NG K L + RK L++ +I S+R
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTL--RKAKAPSGLDQS-RI-PFSERK----- 413
Query: 269 PKCFTRKDDLNRHMRNHDGLK---PFHCS 294
K R L PFH
Sbjct: 414 LKFSNR------------FLPVASPFHSH 430
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 47.2 bits (113), Expect = 1e-07
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 225 HSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLC 265
K + C+ C K F+R L RH KIH
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 44.9 bits (107), Expect = 9e-07
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQC 209
+ K + C+ C ++FT+ +L H +IH
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 42.2 bits (100), Expect = 7e-06
Identities = 13/41 (31%), Positives = 14/41 (34%)
Query: 253 HMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHC 293
SK Y C C K FTR L RH + H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 42.2 bits (100), Expect = 9e-06
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLC 237
+ + CN C FT L RH +IH
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 281 HMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHAC 321
+ K ++C+ C ++FT+ L H +IHT +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 38.3 bits (90), Expect = 2e-04
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
T+SK + C+ C ++F++ +L H K+ +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 35.6 bits (83), Expect = 0.002
Identities = 9/41 (21%), Positives = 12/41 (29%)
Query: 141 HMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQC 181
K + C+ C K FT RH + H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 32.9 bits (76), Expect = 0.014
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 10/44 (22%)
Query: 75 HLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHS 118
+ S+ C++C K F +HL RH K H+
Sbjct: 3 SGSSG----------TDSKSYNCNECGKAFTRIFHLTRHQKIHT 36
Score = 31.0 bits (71), Expect = 0.068
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRV 397
+ K + C+ C + F + L H ++
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI 34
Score = 29.5 bits (67), Expect = 0.31
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K + CN C K + R LT H + H
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 29.1 bits (66), Expect = 0.31
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
+ C+ C K FT+ +L H K H
Sbjct: 12 SYNCNECGKAFTRIFHLTRHQKIH 35
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 46.8 bits (112), Expect = 2e-07
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 171 RAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPF 207
G + ++C C +SF Q+ +L +H RIH G P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 46.4 bits (111), Expect = 2e-07
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 283 RNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
G + + C C +SF QK L +H RIHT S P +
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 43.3 bits (103), Expect = 3e-06
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 226 SRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRY 263
S +G + + C C K F +K L H +IH GS
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 41.4 bits (98), Expect = 2e-05
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 199 RIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPF 235
G R ++C C F K L H RIH G P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 36.8 bits (86), Expect = 6e-04
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 257 HEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPF 291
G + Y C C K F +K L H R H G P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 34.5 bits (80), Expect = 0.004
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 311 RIHTNSKPHACSICTESFSQKSNLYIH 337
+ + + C C +SF QK +L +H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH 29
Score = 31.8 bits (73), Expect = 0.034
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 145 HDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPF 179
G +V+ C C K+F K H R H G P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 29.8 bits (68), Expect = 0.18
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
++C C K F +K +L H + H
Sbjct: 10 VYECQECGKSFRQKGSLTLHERIH 33
Score = 28.3 bits (64), Expect = 0.62
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSH 117
G+ + C +C K+F K L H + H
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 28.3 bits (64), Expect = 0.72
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 372 GVKPFKCSMCDEGFPKKSVLKEHLRV 397
G + ++C C + F +K L H R+
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERI 32
Score = 27.9 bits (63), Expect = 0.75
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
+ ++C C K + +K LT H R H
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIH 33
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 46.8 bits (111), Expect = 2e-07
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
+ G PF+CS C FTQR+ L H R H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 44.5 bits (105), Expect = 1e-06
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 224 RHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
G PF CS C + F++++ L +H + H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 43.7 bits (103), Expect = 2e-06
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 280 RHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
+ G PF CS C FTQ+ L H R H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPS 42
Score = 38.7 bits (90), Expect = 1e-04
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 252 RHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDG 287
G + C+ C + FT+++ L +H R H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 38.7 bits (90), Expect = 2e-04
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 197 HLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNG 231
G PF+C+ C FT ++ L +H R H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 37.1 bits (86), Expect = 5e-04
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRV 397
+ G PFKCS CD F +++ L +H R
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERT 34
Score = 33.7 bits (77), Expect = 0.008
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 86 EKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHS 118
S GE F CS+C + F + +L +H ++H+
Sbjct: 4 GSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 33.7 bits (77), Expect = 0.009
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 402 NPFKCDICFKLFTKKSNLRTHIKTH 426
NPFKC C ++FT+++ L H +TH
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 33.3 bits (76), Expect = 0.013
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEG 175
G F CS C + FT + +H R H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 32.9 bits (75), Expect = 0.016
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
FKC+ C + + ++N L H RTH
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 31.8 bits (72), Expect = 0.046
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHG 343
P CS C F+Q++ L H +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 29.1 bits (65), Expect = 0.34
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDG 147
S + F+C +C F + +H + H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 48.4 bits (114), Expect = 2e-07
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 4/100 (4%)
Query: 366 HMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKT 425
V + ++C +C+ H R+ N C C F + H
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHESK 64
Query: 426 HE--PIPCDKCPEIFEKKTDLQEHVDKCHNLHEEDEEEGL 463
E + C +C F+ + H + HN + G
Sbjct: 65 CEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSGP 104
Score = 48.4 bits (114), Expect = 3e-07
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 146 DGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIR 205
+ +V+ C +C+ + ++ H R C CS F H +
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEH-ESKCEYK 68
Query: 206 PFQCNVCYICFTNKSDLNRH-SRIHN 230
C C F + + RH +HN
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 48.4 bits (114), Expect = 3e-07
Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 3/87 (3%)
Query: 169 HMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRI 228
E + +QC +C+ + H R+ C C + F + H
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESK 64
Query: 229 HNGIKPFLCSMCAKCFSRKDDLNRHMK 255
K C C + F + RH
Sbjct: 65 CEY-KKLTCLECMRTFKSSFSIWRHQV 90
Score = 44.9 bits (105), Expect = 4e-06
Identities = 14/84 (16%), Positives = 20/84 (23%), Gaps = 3/84 (3%)
Query: 86 EKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
+ + C C H + C C F+ H
Sbjct: 8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHESKC 65
Query: 146 DGVKVFLCSVCSKTFTDKVKFNRH 169
+ K C C +TF RH
Sbjct: 66 EYKK-LTCLECMRTFKSSFSIWRH 88
Score = 43.7 bits (102), Expect = 1e-05
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 3/80 (3%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLK 289
+ + C +C S + H ++ +C C F + H + K
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESKCEY-K 68
Query: 290 PFHCSVCFESFTQKALLNIH 309
C C +F + H
Sbjct: 69 KLTCLECMRTFKSSFSIWRH 88
Score = 42.2 bits (98), Expect = 4e-05
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 286 DGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVN 345
+ + + C +C + H R+ N+ C C+ F H + +
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEH-ESKCEYK 68
Query: 346 PFKCDVCPNETFEKETQLSLHMRTVHG 372
C C TF+ + H VH
Sbjct: 69 KLTCLEC-MRTFKSSFSIWRHQVEVHN 94
Score = 42.2 bits (98), Expect = 4e-05
Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 13/100 (13%)
Query: 44 NDENSSGKKMVKKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKT 103
+S + + ++C +C + + +H R + C C
Sbjct: 4 GSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN------------AAVCPYCSLR 51
Query: 104 FVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMK 143
F H +S E K C +C F RH
Sbjct: 52 FFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQV 90
Score = 37.2 bits (85), Expect = 0.002
Identities = 20/88 (22%), Positives = 26/88 (29%), Gaps = 4/88 (4%)
Query: 315 NSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVK 374
N + + C +C S H +L N C C F E L + K
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPE--LKQEHESKCEYK 68
Query: 375 PFKCSMCDEGFPKKSVLKEHLRVSHNVN 402
C C F + H HN N
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 32.6 bits (73), Expect = 0.086
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Query: 392 KEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTHE-PIPCDKCPEIFEKKTDLQEHVDK 450
N ++C +C + +H + C C F QEH K
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESK 64
Query: 451 C 451
C
Sbjct: 65 C 65
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 45.3 bits (107), Expect = 8e-07
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 257 HEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVC 296
K+ C +C K F LNRH +H G KP+
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 44.2 bits (104), Expect = 2e-06
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 171 RAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVC 212
+ K C +C + F +LN H H G +P+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 44.2 bits (104), Expect = 2e-06
Identities = 13/42 (30%), Positives = 14/42 (33%)
Query: 227 RIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMC 268
K C +C K F LNRH H G K Y
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 43.8 bits (103), Expect = 2e-06
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 199 RIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCA 241
+ C +C F + LNRH H+G KP+ +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 42.6 bits (100), Expect = 7e-06
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCS 185
K C +C K F D NRH +H G KP+ S
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 42.6 bits (100), Expect = 7e-06
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 283 RNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICT 325
+ K C +C + F LN H H+ KP++ +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 40.7 bits (95), Expect = 3e-05
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 94 SFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQC 128
C C K F D +HLNRH SHS K +
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 34.1 bits (78), Expect = 0.007
Identities = 10/42 (23%), Positives = 13/42 (30%)
Query: 311 RIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVC 352
K AC IC + F +L H G P+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 32.6 bits (74), Expect = 0.021
Identities = 13/43 (30%), Positives = 14/43 (32%)
Query: 115 KSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCS 157
S K CE C F NRH H G K + S
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 31.1 bits (70), Expect = 0.078
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH---EPIPCDKC 434
C+IC K+F +L H +H +P
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 30.7 bits (69), Expect = 0.12
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 10/55 (18%)
Query: 46 ENSSGKKMVKKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQC 100
+ S + K+ C IC K + L H +H GE ++
Sbjct: 2 SSGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHS----------GEKPYSSGPS 46
Score = 29.5 bits (66), Expect = 0.28
Identities = 7/36 (19%), Positives = 10/36 (27%)
Query: 374 KPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDIC 409
K C +C + F L H P+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 29.1 bits (65), Expect = 0.42
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 346 PFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMC 381
C++C + F L+ H + G KP+
Sbjct: 12 QVACEIC-GKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 42.3 bits (100), Expect = 7e-06
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 226 SRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLC 265
S +G KP+ C+ C + FS + L +H K+H
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 41.2 bits (97), Expect = 2e-05
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 173 HEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQC 209
G KP+ C+ C E+F+ + L H ++H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 39.6 bits (93), Expect = 6e-05
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 285 HDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHAC 321
G KP+ C+ C E+F+ L H ++HT +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 35.4 bits (82), Expect = 0.002
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 311 RIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
+ KP++C+ C E+FS + L H K+ +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 35.0 bits (81), Expect = 0.002
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 199 RIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNG 231
G +P+ C C F++ + L +H ++H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTV 35
Score = 33.5 bits (77), Expect = 0.008
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 255 KIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHC 293
G K Y C C + F+ + L +H + H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 32.3 bits (74), Expect = 0.022
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHS 118
GE ++C++C +TF D L +H K H+
Sbjct: 7 GEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 30.8 bits (70), Expect = 0.095
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 143 KIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQC 181
G K + C+ C +TF+D + +H + H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 29.6 bits (67), Expect = 0.25
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+ C C + F+ + L H K H
Sbjct: 10 PYSCAECKETFSDNNRLVQHQKMH 33
Score = 28.4 bits (64), Expect = 0.56
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 372 GVKPFKCSMCDEGFPKKSVLKEHLRV 397
G KP+ C+ C E F + L +H ++
Sbjct: 7 GEKPYSCAECKETFSDNNRLVQHQKM 32
Score = 27.3 bits (61), Expect = 1.5
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K + C C + ++ NRL H + H
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMH 33
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 41.8 bits (99), Expect = 8e-06
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSK 261
+PF+C+ C K F+R D+L RH + H G K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 38.7 bits (91), Expect = 9e-05
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 261 KRYLCTM--CPKCFTRKDDLNRHMRNHDGLK 289
+ ++CT C K FTR D+L RH R H G K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 34.5 bits (80), Expect = 0.003
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIK 233
RPF C C FT +L RH R H G K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 33.0 bits (76), Expect = 0.012
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIR 205
+PF C+ C + FT+ L H R H G +
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 30.7 bits (70), Expect = 0.068
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 55 KKFKCNI--CPKRYARKNRLTNHLRTH 79
+ F C C KR+ R + L H RTH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 30.3 bits (69), Expect = 0.095
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSK 317
+PF C+ C + FT+ L H R HT K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 26.4 bits (59), Expect = 2.2
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIK 177
+ F+C+ C K FT + RH R H G K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 25.3 bits (56), Expect = 5.8
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 403 PFKCDI--CFKLFTKKSNLRTHIKTH 426
PF C C K FT+ L+ H +TH
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTH 27
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 39.8 bits (93), Expect = 4e-05
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHM-KIHEGS 260
K + C +C + F+R+D L RH KIH G+
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN 29
Score = 32.1 bits (73), Expect = 0.022
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRN-HDG 287
K Y C +C + FTR+D L RH + H G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 29.4 bits (66), Expect = 0.19
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSR-IHNG 231
+ + C +C FT + L RH++ IH+G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 28.7 bits (64), Expect = 0.44
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLR-IHDG 203
K + C +C+ +FT+R L H + IH G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 27.5 bits (61), Expect = 1.1
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 374 KPFKCSMCDEGFPKKSVLKEHLRVSHNVN 402
K + C +C+ F ++ +L H + H+ N
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN 29
Score = 27.1 bits (60), Expect = 1.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 289 KPFHCSVCFESFTQKALLNIHLR 311
K + C +C +FT++ LL H +
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQ 23
Score = 26.4 bits (58), Expect = 2.4
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGS 83
K + C +C + + R++ L H + +G+
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN 29
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 38.1 bits (89), Expect = 2e-04
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+ F+C +C + F+R++ L RH + H K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 35.4 bits (82), Expect = 0.002
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLK 289
+ ++C +C + F R++ L RH R+H K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 31.1 bits (71), Expect = 0.043
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
+ F C VC+ +F ++ +L H R H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 31.1 bits (71), Expect = 0.056
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
+ F C +C + +AR+ L H R+H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 30.7 bits (70), Expect = 0.067
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSK 317
+ F C VC +F ++ L H R HTN K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 30.7 bits (70), Expect = 0.074
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIK 233
R F C VC F + L RH R H K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 30.4 bits (69), Expect = 0.079
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
F C++C + F ++ +L+ H ++H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSH 25
Score = 30.4 bits (69), Expect = 0.086
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENK 121
F C C + F + HL RH +SH+ K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.4 bits (64), Expect = 0.48
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIK 177
+ F+C VC++ F + RH R+H K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 27.3 bits (61), Expect = 1.1
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 374 KPFKCSMCDEGFPKKSVLKEHLRVSH 399
+ F C +C F ++ LK H R SH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR-SH 25
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 38.4 bits (88), Expect = 2e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 229 HNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGS 260
+G KP+ C +C F RKD ++ H++ H+GS
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 36.0 bits (82), Expect = 0.001
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 48 SSGKKMVKKFKCNICPKRYARKNRLTNHLRTHEAG 82
SSG K + C +C R+ RK+R++ H+R+H+
Sbjct: 2 SSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 35.3 bits (80), Expect = 0.003
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 257 HEGSKRYLCTMCPKCFTRKDDLNRHMRNHDG 287
G K Y C +C F RKD ++ H+R+HDG
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 33.7 bits (76), Expect = 0.008
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 201 HDGIRPFQCNVCYICFTNKSDLNRHSRIHNG 231
G +P+ C VC + F K ++ H R H+G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 33.4 bits (75), Expect = 0.012
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 172 AHEGIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
G KP+ C VC F ++ ++ H+R HDG
Sbjct: 4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 29.1 bits (64), Expect = 0.34
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 313 HTNSKPHACSICTESFSQKSNLYIHLKLQHG 343
+ KP++C +C F +K + H++ G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 28.3 bits (62), Expect = 0.85
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 145 HDGVKVFLCSVCSKTFTDKVKFNRHMRAHEG 175
G K + C VC F K + + H+R+H+G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 28.0 bits (61), Expect = 0.90
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 285 HDGLKPFHCSVCFESFTQKALLNIHLRIHTNS 316
G KP+ C VC F +K ++ H+R H S
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 28.0 bits (61), Expect = 1.0
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTHE 427
P+ C +C F +K + H+++H+
Sbjct: 10 PYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 26.4 bits (57), Expect = 4.2
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 117 HSENKVFRCEQCRFDFYVKREYNRHMKIHDG 147
S K + C C F K + H++ HDG
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 26.0 bits (56), Expect = 5.9
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 374 KPFKCSMCDEGFPKKSVLKEHLRVSH 399
KP+ C +C F +K + H+R
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 25.3 bits (54), Expect = 8.3
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHS 118
GE ++C C F K ++ H++SH
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 41.8 bits (97), Expect = 7e-04
Identities = 9/54 (16%), Positives = 16/54 (29%)
Query: 148 VKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIH 201
+ + S + +QC VCS +L+ H+ H
Sbjct: 150 MSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 41.4 bits (96), Expect = 0.001
Identities = 9/53 (16%), Positives = 15/53 (28%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIH 229
S ++ +QC+VC + DL+ H H
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 38.3 bits (88), Expect = 0.008
Identities = 12/93 (12%), Positives = 23/93 (24%), Gaps = 9/93 (9%)
Query: 20 DIEKLVIEESASEDSDDEEDEDFENDENSSGKK----MVKKFKCNICPKRYARKNRLTNH 75
D E ++ S + G ++C++C L H
Sbjct: 140 DNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAH 199
Query: 76 LRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKW 108
+ +H S + F+ W
Sbjct: 200 VASHGLH-----GNMTLTSSEIQRHITEFISSW 227
Score = 37.9 bits (87), Expect = 0.010
Identities = 8/65 (12%), Positives = 17/65 (26%), Gaps = 2/65 (3%)
Query: 311 RIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTV 370
+ S+ + ++C VC + L H+ +
Sbjct: 145 SNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVC-SAVLFSPLDLDAHVAS- 202
Query: 371 HGVKP 375
HG+
Sbjct: 203 HGLHG 207
Score = 37.9 bits (87), Expect = 0.011
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 7/76 (9%)
Query: 217 TNKSDLNRHSRIHNG-------IKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCP 269
N ++L+R + N + + + S+ Y C +C
Sbjct: 128 NNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCS 187
Query: 270 KCFTRKDDLNRHMRNH 285
DL+ H+ +H
Sbjct: 188 AVLFSPLDLDAHVASH 203
Score = 37.1 bits (85), Expect = 0.019
Identities = 11/89 (12%), Positives = 26/89 (29%), Gaps = 3/89 (3%)
Query: 341 QHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEG---FPKKSVLKEHLRV 397
+ D N E ++ KP + + K
Sbjct: 115 KSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPT 174
Query: 398 SHNVNPFKCDICFKLFTKKSNLRTHIKTH 426
+ + + ++C +C + +L H+ +H
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 35.6 bits (81), Expect = 0.051
Identities = 6/56 (10%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGV 344
++ ++ + C +C+ +L H HG+
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAH-VASHGL 205
Score = 35.2 bits (80), Expect = 0.066
Identities = 18/139 (12%), Positives = 42/139 (30%), Gaps = 7/139 (5%)
Query: 12 DANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVKKFKCNICPKRYARKNR 71
++ E K+ ++ ++ + D + DE + K+ K K +
Sbjct: 67 ESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQ--KQAKDTDKSKAQVTYSD 124
Query: 72 LTNHLRTHEAGSGDEKSEGG-----EGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCE 126
+ + SG+ +EGG + + S ++C
Sbjct: 125 TGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCH 184
Query: 127 QCRFDFYVKREYNRHMKIH 145
C + + + H+ H
Sbjct: 185 VCSAVLFSPLDLDAHVASH 203
Score = 34.4 bits (78), Expect = 0.14
Identities = 6/42 (14%), Positives = 13/42 (30%)
Query: 216 FTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIH 257
+ + + C +C+ DL+ H+ H
Sbjct: 162 VSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 34.1 bits (77), Expect = 0.16
Identities = 6/57 (10%), Positives = 11/57 (19%), Gaps = 1/57 (1%)
Query: 346 PFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVN 402
+ K T ++C +C L H+
Sbjct: 152 TRIAEATSA-IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHG 207
Score = 33.3 bits (75), Expect = 0.27
Identities = 6/49 (12%), Positives = 11/49 (22%)
Query: 265 CTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIH 313
++ + C VC L+ H+ H
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 32.5 bits (73), Expect = 0.49
Identities = 7/58 (12%), Positives = 13/58 (22%)
Query: 116 SHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAH 173
+ E + C VCS + + H+ +H
Sbjct: 146 NQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 32.1 bits (72), Expect = 0.60
Identities = 13/96 (13%), Positives = 24/96 (25%), Gaps = 12/96 (12%)
Query: 26 IEESASEDSDDEEDEDFENDENSSGKKMV--KKFKCNICPKRYARKNRLTNHLRTHEAGS 83
+ S + ++ E N +N G ++ T +G
Sbjct: 120 VTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGH 179
Query: 84 GDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSE 119
+ C C L+ H+ SH
Sbjct: 180 ----------GYQCHVCSAVLFSPLDLDAHVASHGL 205
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 36.7 bits (84), Expect = 0.003
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 361 TQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSH---NVNP-FKCDICFKLFTKK 416
+ + ++C C P ++ H+ H +N + C C L +
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 417 SNLRTHIKTHEP 428
L H + P
Sbjct: 64 DALSEHNLKYHP 75
Score = 34.4 bits (78), Expect = 0.018
Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 109 HLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHM-KIHDGVK---VFLCSVCSKTFTDKV 164
H + + ++ + C+ C F + H+ H V ++C C+
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 165 KFNRH-MRAHEGIKPFQCSV 183
+ H ++ H G + F+ ++
Sbjct: 65 ALSEHNLKYHPGEENFKLTM 84
Score = 31.7 bits (71), Expect = 0.17
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 166 FNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRI-HDGIR---PFQCNVCYICFTNKSD 221
+ + + + ++C C+ + H+ H + + C C
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 222 LNRH-SRIHNGIKPFLCSM 239
L+ H + H G + F +M
Sbjct: 66 LSEHNLKYHPGEENFKLTM 84
Score = 31.3 bits (70), Expect = 0.24
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 79 HEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSH----SENKVFRCEQCRFDFYV 134
H +++++ EG + C C D H+ S N + C +C F
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 135 KREYNRH-MKIHDGVKVFLCSV 155
+ H +K H G + F ++
Sbjct: 63 YDALSEHNLKYHPGEENFKLTM 84
Score = 30.1 bits (67), Expect = 0.63
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 309 HLRIHTNSKPHACSICTESFSQKSNLYIHLKLQH---GVNP-FKCDVCPNETFEKETQLS 364
+ + + C CT + H+ +H +N + C C N ++ LS
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVEC-NFLTKRYDALS 67
Query: 365 LHMRTVH-GVKPFKCSM 380
H H G + FK +M
Sbjct: 68 EHNLKYHPGEENFKLTM 84
Score = 29.7 bits (66), Expect = 0.77
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 191 RSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRI-HNGIK---PFLCSMCAKCFSR 246
+ + + + ++C C + + H H + ++C C R
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 247 KDDLNRH-MKIHEGSKRYLCTM 267
D L+ H +K H G + + TM
Sbjct: 63 YDALSEHNLKYHPGEENFKLTM 84
Score = 29.7 bits (66), Expect = 0.83
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 47 NSSGKKMVKKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVD 106
N KK+ ++C C + N T H+ + S+ C +C
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNS------SYVCVECNFLTKR 62
Query: 107 KWHLNRH-LKSHSENKVFRCEQCRFDFYVKRE 137
L+ H LK H + F+ + + E
Sbjct: 63 YDALSEHNLKYHPGEENFKLTMVKRNNQTIFE 94
Score = 28.6 bits (63), Expect = 2.3
Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 5/81 (6%)
Query: 248 DDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRN-HDGLK---PFHCSVCFESFTQK 303
+ + + + Y C C + H+ + H + + C C +
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 304 ALLNIH-LRIHTNSKPHACSI 323
L+ H L+ H + ++
Sbjct: 64 DALSEHNLKYHPGEENFKLTM 84
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 34.3 bits (78), Expect = 0.005
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 201 HDGIRPFQCNVCYICFTNKSDLNRHSRIH 229
G RPF C +C FT K++ RH ++H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 34.0 bits (77), Expect = 0.005
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 285 HDGLKPFHCSVCFESFTQKALLNIHLRIHTNS 316
G +PF C +C +FT KA HL++HT++
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 33.2 bits (75), Expect = 0.010
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 172 AHEGIKPFQCSVCSESFTQRSNLNIHLRIH 201
G +PF C +C +FT ++N HL++H
Sbjct: 1 GSSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 32.0 bits (72), Expect = 0.026
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 229 HNGIKPFLCSMCAKCFSRKDDLNRHMKIH 257
+G +PF+C +C F+ K + RH+K+H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 29.3 bits (65), Expect = 0.25
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 145 HDGVKVFLCSVCSKTFTDKVKFNRHMRAH 173
G + F+C +C FT K RH++ H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 28.2 bits (62), Expect = 0.65
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 257 HEGSKRYLCTMCPKCFTRKDDLNRHMRNH 285
G + ++C +C FT K + RH++ H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 27.8 bits (61), Expect = 0.84
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PF C IC FT K+N H+K H
Sbjct: 7 PFVCRICLSAFTTKANCARHLKVH 30
Score = 27.0 bits (59), Expect = 1.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 313 HTNSKPHACSICTESFSQKSNLYIHLKLQ 341
+ +P C IC +F+ K+N HLK+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 26.3 bits (57), Expect = 3.8
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 117 HSENKVFRCEQCRFDFYVKREYNRHMKIH 145
S + F C C F K RH+K+H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 25.5 bits (55), Expect = 7.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 372 GVKPFKCSMCDEGFPKKSVLKEHLRV 397
G +PF C +C F K+ HL+V
Sbjct: 4 GKRPFVCRICLSAFTTKANCARHLKV 29
Score = 25.1 bits (54), Expect = 7.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHSE 119
G+ F C C F K + RHLK H++
Sbjct: 4 GKRPFVCRICLSAFTTKANCARHLKVHTD 32
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 33.4 bits (76), Expect = 0.008
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 56 KFKCNICPKRYARKNRLTNHLRTHEAGSGDEK 87
KF C CPKR+ R + L+ H+ HE + +
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLGEERR 33
Score = 32.2 bits (73), Expect = 0.023
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 235 FLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
F C C K F R D L++H+ +HE
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 31.4 bits (71), Expect = 0.039
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 262 RYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
++ C CPK F R D L++H+ H+ L
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 29.5 bits (66), Expect = 0.24
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENK 121
F C +CPK F+ HL++H+ H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLG 29
Score = 26.0 bits (57), Expect = 3.4
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 404 FKCDICFKLFTKKSNLRTHIKTHE 427
F C C K F + +L HI HE
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHE 26
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 35.3 bits (80), Expect = 0.009
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 268 CPKC--FTRK--DDLNRHMRN-HDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
CP C TRK L +HM C C + F KA LN H ++KP
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 34.9 bits (79), Expect = 0.010
Identities = 15/58 (25%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 347 FKCDVCPNETFEKETQLSLHMRTVH-GVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNP 403
C C T + L HM KC C + F K+ L H H+ P
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 33.8 bits (76), Expect = 0.026
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 368 RTVHGVKPFKCSMCDEGFPKKSV-LKEHLRVSH-NVNPFKCDICFKLFTKKSNLRTHIK- 424
R +H C C+ K V LK+H+ V + KC C K F K+ L H
Sbjct: 17 RAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Query: 425 THEPIPCDK 433
H P D
Sbjct: 77 EHSAKPSDA 85
Score = 30.7 bits (68), Expect = 0.36
Identities = 15/63 (23%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Query: 118 SENKVFRCEQCRFDFY-VKREYNRHMKI-HDGVKVFLCSVCSKTFTDKVKFNRHMRAHEG 175
E C C +HM++ C C K F K N H A
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Query: 176 IKP 178
KP
Sbjct: 80 AKP 82
Score = 28.8 bits (63), Expect = 1.8
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 404 FKCDICFKLFTKK-SNLRTHI----KTHEPIPCDKCPEIFEKKTDLQEHVDKCHN 453
C C + K L+ H+ K + + C C + F+ K L H H+
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Score = 28.8 bits (63), Expect = 1.9
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 149 KVFLCSVCSKTFTDKVK-FNRHM-RAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+C C+ + +HM + +C C + F ++ LN H +P
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 27.2 bits (59), Expect = 5.1
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 51 KKMVKKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHL 110
++ + + +CP + L+ H E + + + C C K F K L
Sbjct: 16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHM-----EVCQKLQDALKCQHCRKQFKSKAGL 70
Query: 111 NRHLKSHSENK 121
N H + K
Sbjct: 71 NYHTMAEHSAK 81
Score = 27.2 bits (59), Expect = 5.1
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 233 KPFLCSMCAKCFSRK--DDLNRHMKI-HEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLK 289
+C C +RK L +HM++ + C C K F K LN H K
Sbjct: 23 GEAVCPTC-NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Query: 290 P 290
P
Sbjct: 82 P 82
Score = 27.2 bits (59), Expect = 6.4
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 177 KPFQCSVCSESFTQR-SNLNIHLRI-HDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
C C+ + L H+ + +C C F +K+ LN H+ + KP
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 34.8 bits (79), Expect = 0.010
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 347 FKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPF 404
C C + L HM + F C C + + +K H+ +HN P
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHME-NCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
Score = 34.1 bits (77), Expect = 0.020
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 268 CPKC--FTRK--DDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
CP C RK + L +HM N + F C C + A + H+ + NS P
Sbjct: 37 CPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Score = 32.1 bits (72), Expect = 0.11
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 118 SENKVFRCEQCR-FDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGI 176
+ C C+ +HM+ ++F C C K H+ A+
Sbjct: 30 VDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNS 88
Query: 177 KPF 179
P
Sbjct: 89 LPS 91
Score = 27.5 bits (60), Expect = 3.8
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Query: 151 FLCSVCSK-TFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPF 207
C C +HM + + F C C + + + H+ + P
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENCKQ-EMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
Score = 27.5 bits (60), Expect = 4.5
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 240 CAKC--FSRK--DDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPF 291
C C RK + L +HM+ + + C C K + H+ + P
Sbjct: 37 CPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
Score = 27.1 bits (59), Expect = 5.1
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 3/83 (3%)
Query: 383 EGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKK-SNLRTHIKTH--EPIPCDKCPEIFE 439
+ S+ ++ + C C + K L+ H++ E C C +
Sbjct: 14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLR 73
Query: 440 KKTDLQEHVDKCHNLHEEDEEEG 462
++ HV HN G
Sbjct: 74 SLAGMKYHVMANHNSLPSGPSSG 96
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 32.6 bits (74), Expect = 0.014
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 235 FLCSMCAKCFSRKDDLNRHMKIHEGSK 261
F C C K F R D L H+ +HE K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 32.2 bits (73), Expect = 0.019
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 262 RYLCTMCPKCFTRKDDLNRHMRNHDGLK 289
++ C CPK F R D L H+ H+ K
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENKK 29
Score = 31.8 bits (72), Expect = 0.027
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 56 KFKCNICPKRYARKNRLTNHLRTHEA 81
KF C CPKR+ R + LT H+ HE
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHEN 27
Score = 30.2 bits (68), Expect = 0.11
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENK 121
F C +CPK F+ HL H+ H K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 25.6 bits (56), Expect = 4.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 404 FKCDICFKLFTKKSNLRTHIKTHE 427
F C C K F + +L HI HE
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHE 26
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 32.8 bits (74), Expect = 0.016
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 232 IKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+KP++C C + F+ L RH++IH G K
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 30.5 bits (68), Expect = 0.079
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 176 IKPFQCSVCSESFTQRSNLNIHLRIHDG 203
+KP+ C C F L H+RIH G
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTG 28
Score = 30.1 bits (67), Expect = 0.12
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 204 IRPFQCNVCYICFTNKSDLNRHSRIHNGIK 233
++P+ C C F + L RH RIH G K
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 29.7 bits (66), Expect = 0.18
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 288 LKPFHCSVCFESFTQKALLNIHLRIHTNSK 317
+KP+ C C F L H+RIHT K
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 27.8 bits (61), Expect = 0.88
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 148 VKVFLCSVCSKTFTDKVKFNRHMRAHEGIK 177
+K ++C C + F D RH+R H G K
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 26.3 bits (57), Expect = 3.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLK 289
K Y+C C + F L RH+R H G K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 25.5 bits (55), Expect = 5.1
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHG 343
KP+ C C F+ L H+++ G
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTG 28
Score = 25.5 bits (55), Expect = 5.3
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 373 VKPFKCSMCDEGFPKKSVLKEHLRV 397
+KP+ C C F L+ H+R+
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRI 25
Score = 25.5 bits (55), Expect = 6.0
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 401 VNPFKCDICFKLFTKKSNLRTHIKTH 426
+ P+ C C + F L+ H++ H
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIH 26
Score = 25.1 bits (54), Expect = 7.3
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENK 121
+ C C + F D L RH++ H+ K
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.5 bits (73), Expect = 0.018
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C C+ + K +LN H++ H G K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 31.3 bits (70), Expect = 0.045
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
KP++C CS + ++NLN+HLR H G
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTG 34
Score = 29.8 bits (66), Expect = 0.20
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLK 289
K Y C C K +LN H+R H G K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 28.6 bits (63), Expect = 0.48
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSK 317
KP+ C C + KA LN+HLR HT K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 27.9 bits (61), Expect = 0.83
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIK 233
+P++C C K++LN H R H G K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 27.1 bits (59), Expect = 1.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 116 SHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVK 149
S S K ++C QC + +K N H++ H G K
Sbjct: 3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 26.3 bits (57), Expect = 2.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 374 KPFKCSMCDEGFPKKSVLKEHLR 396
KP+KC C K+ L HLR
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLR 30
Score = 26.3 bits (57), Expect = 3.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P+KC C K+NL H++ H
Sbjct: 9 PYKCPQCSYASAIKANLNVHLRKH 32
Score = 25.2 bits (54), Expect = 8.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 314 TNSKPHACSICTESFSQKSNLYIHLKLQHG 343
++ KP+ C C+ + + K+NL +HL+ G
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTG 34
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 31.5 bits (71), Expect = 0.035
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHE 258
+P+ C C K F R DL RH K H+
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 26.9 bits (59), Expect = 1.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 268 CPKCFTRKDDLNRHMRNHD 286
C K F R DL RH ++H
Sbjct: 11 CDKAFVRNHDLIRHKKSHQ 29
Score = 25.4 bits (55), Expect = 5.9
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIH 229
RP+ C+ C F DL RH + H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 34.0 bits (79), Expect = 0.045
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 504 VQAYEHGEDAARDADILVTATYSSVPVLKYEWLKKK 539
+ ++ D+++TAT S P+++ L
Sbjct: 68 YVLINDIDSLIKNNDVIITATSSKTPIVEERSLMPG 103
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 31.8 bits (72), Expect = 0.049
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 402 NPFKCDI--CFKLFTKKSNLRTHIKTH 426
F+C C K F ++ N+R+HI+TH
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 29.1 bits (65), Expect = 0.41
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 88 SEGGEGSFTC--SQCPKTFVDKWHLNRHLKSHSENK 121
E + +F C C KTF ++++ H+++H E++
Sbjct: 12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 29.1 bits (65), Expect = 0.43
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 261 KRYLCTM--CPKCFTRKDDLNRHMRNHDG 287
K + C C K F R+ ++ H++ H
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
Score = 28.3 bits (63), Expect = 0.77
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIR 205
K F+C C+++F +R N+ H++ H R
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 27.1 bits (60), Expect = 2.3
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 55 KKFKCNI--CPKRYARKNRLTNHLRTH 79
K F+C C K + R+ + +H++TH
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 25.2 bits (55), Expect = 9.4
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSK 261
K F C C K F R+ ++ H++ H +
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 31.3 bits (70), Expect = 0.053
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
KP QC +C ++FTQ S+L H+R H G
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTG 27
Score = 28.2 bits (62), Expect = 0.60
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSK 317
KP C +C ++FTQ + L H+R HT K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 27.8 bits (61), Expect = 0.76
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP C MC K F++ L H++ H G K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 26.3 bits (57), Expect = 2.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 264 LCTMCPKCFTRKDDLNRHMRNHDGLK 289
C MC K FT+ L H+R H G K
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 25.5 bits (55), Expect = 5.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
P +C +C K FT+ S+L H++ H
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQH 25
Score = 25.5 bits (55), Expect = 5.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHG 343
KP C +C ++F+Q S+L H++ G
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTG 27
Score = 24.7 bits (53), Expect = 8.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIK 233
+P QC +C FT S L H R H G K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 34.9 bits (80), Expect = 0.061
Identities = 10/59 (16%), Positives = 24/59 (40%)
Query: 10 YVDANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVKKFKCNICPKRYAR 68
+VD N EE + S++ D+++++ E D + + +++A
Sbjct: 56 FVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAE 114
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 30.8 bits (70), Expect = 0.080
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 403 PFKCDI--CFKLFTKKSNLRTHIKTH 426
C I C K++ K S+LR H++ H
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 28.9 bits (65), Expect = 0.36
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIR 205
K C + C + + + S+L HLR H G R
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 27.7 bits (62), Expect = 1.0
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 55 KKFKCNI--CPKRYARKNRLTNHLRTH 79
K+ C+I C K Y + + L HLR H
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 25.8 bits (57), Expect = 5.0
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 261 KRYLCTM--CPKCFTRKDDLNRHMRNHDGLK 289
K+++C + C K + + L H+R H G +
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 25.8 bits (57), Expect = 5.4
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSK 317
K C + C + + + + L HLR HT +
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 25.0 bits (55), Expect = 9.3
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSK 261
K +C + C K + + L H++ H G +
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 34.8 bits (79), Expect = 0.10
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRT-HEAGSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRH 113
+ CN+C R++ + L+ HLR+ H + + + ++F+ W R
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHRDDAS-----TLLATPMINNAIRSFLTAWDDIRI 169
Query: 114 LKSHSENK 121
L +K
Sbjct: 170 LSPDVSSK 177
Score = 33.6 bits (76), Expect = 0.25
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 314 TNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
N + C++C FS S L HL+ H +
Sbjct: 112 VNPSSYVCNVCNARFSTMSALSEHLRSDHRDDA 144
Score = 32.5 bits (73), Expect = 0.52
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 345 NPFKCDVCPNETFEKETQLSLHMRTVHGV 373
+ + C+VC F + LS H+R+ H
Sbjct: 115 SSYVCNVCNAR-FSTMSALSEHLRSDHRD 142
Score = 30.2 bits (67), Expect = 3.0
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 260 SKRYLCTMCPKCFTRKDDLNRHMRNHDGL 288
Y+C +C F+ L+ H+R+
Sbjct: 114 PSSYVCNVCNARFSTMSALSEHLRSDHRD 142
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 30.2 bits (67), Expect = 0.10
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 232 IKPFLCSMCAKCFSRKDDLNRHMKIHEG 259
++P+ CS+C K FS K + H ++H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 29.8 bits (66), Expect = 0.16
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 176 IKPFQCSVCSESFTQRSNLNIHLRIHDG 203
++P+ CSVC + F+ + + H R+H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 28.6 bits (63), Expect = 0.44
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 204 IRPFQCNVCYICFTNKSDLNRHSRIHNG 231
+RP+ C+VC F+ K + H R+H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 28.2 bits (62), Expect = 0.64
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 288 LKPFHCSVCFESFTQKALLNIHLRIHT 314
++P+ CSVC + F+ K + H R+HT
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHT 27
Score = 26.7 bits (58), Expect = 2.2
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 54 VKKFKCNICPKRYARKNRLTNHLRTH 79
++ + C++C KR++ K+++ H R H
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 26.3 bits (57), Expect = 2.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 148 VKVFLCSVCSKTFTDKVKFNRHMRAHEG 175
++ + CSVC K F+ K + H R H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 25.9 bits (56), Expect = 3.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHG 343
+P++CS+C + FS K + H ++ G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 25.5 bits (55), Expect = 4.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 401 VNPFKCDICFKLFTKKSNLRTHIKTH 426
+ P+ C +C K F+ K + TH + H
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVH 26
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.8 bits (66), Expect = 0.16
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 288 LKPFHCSVCFESFTQKALLNIHLRIHTNSK 317
K F C C + F K L HLRIHTN K
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 29.0 bits (64), Expect = 0.39
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 49 SGKKMVKKFKCNICPKRYARKNRLTNHLRTH 79
S K F C C K + K+ L HLR H
Sbjct: 2 SSGSSGKIFTCEYCNKVFKFKHSLQAHLRIH 32
Score = 28.3 bits (62), Expect = 0.71
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 176 IKPFQCSVCSESFTQRSNLNIHLRIHDG 203
K F C C++ F + +L HLRIH
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTN 34
Score = 28.3 bits (62), Expect = 0.72
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 232 IKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
K F C C K F K L H++IH K
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 25.6 bits (55), Expect = 6.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 148 VKVFLCSVCSKTFTDKVKFNRHMRAHEGIK 177
K+F C C+K F K H+R H K
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 25.2 bits (54), Expect = 9.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 404 FKCDICFKLFTKKSNLRTHIKTH 426
F C+ C K+F K +L+ H++ H
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIH 32
Score = 25.2 bits (54), Expect = 9.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 116 SHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVK 149
S S K+F CE C F K H++IH K
Sbjct: 3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 33.3 bits (75), Expect = 0.17
Identities = 7/49 (14%), Positives = 11/49 (22%)
Query: 237 CSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNH 285
K H + G KR + +DL +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 32.1 bits (72), Expect = 0.40
Identities = 11/62 (17%), Positives = 19/62 (30%)
Query: 168 RHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSR 227
R +R E ++ + + S IH + G + Q N DL
Sbjct: 170 RDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
Query: 228 IH 229
+
Sbjct: 230 LS 231
Score = 31.7 bits (71), Expect = 0.50
Identities = 6/39 (15%), Positives = 15/39 (38%)
Query: 361 TQLSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSH 399
+Q ++H G K + ++ L+ + +S
Sbjct: 194 SQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSV 232
Score = 31.7 bits (71), Expect = 0.57
Identities = 7/53 (13%), Positives = 14/53 (26%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIH 201
+V+ K + H G K Q + +L + +
Sbjct: 179 RVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 30.9 bits (69), Expect = 1.0
Identities = 6/62 (9%), Positives = 16/62 (25%)
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMR 171
R ++ +V+ E + + H + G K + + +
Sbjct: 170 RDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
Query: 172 AH 173
Sbjct: 230 LS 231
Score = 30.2 bits (67), Expect = 1.9
Identities = 5/55 (9%), Positives = 10/55 (18%)
Query: 263 YLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSK 317
+ K H G K + L + + +
Sbjct: 181 WYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 29.4 bits (65), Expect = 3.2
Identities = 5/39 (12%), Positives = 12/39 (30%)
Query: 388 KSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKTH 426
S H ++ + + ++ +LR I
Sbjct: 193 MSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 27.9 bits (61), Expect = 8.2
Identities = 3/35 (8%), Positives = 8/35 (22%)
Query: 83 SGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSH 117
+ GE + + + L +
Sbjct: 197 TIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 32.8 bits (74), Expect = 0.17
Identities = 18/126 (14%), Positives = 32/126 (25%), Gaps = 8/126 (6%)
Query: 313 HTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSL--HMRTV 370
H C + E ++ L+ + + CPNE + +L +
Sbjct: 48 SIRDAGHKCPVDNEILL-ENQLFPDNFAKREILSLMVK-CPNEGCLHKMELRHLEDHQAH 105
Query: 371 HGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTHIKT--HEP 428
C C F K + H+ CD C + + H +
Sbjct: 106 CEFALMDCPQCQRPFQKFH-INIHILKDCPRRQVSCDNCAASMAFE-DKEIHDQNCPLAL 163
Query: 429 IPCDKC 434
Sbjct: 164 EHHHHH 169
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.8 bits (66), Expect = 0.23
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEG 90
K FKCN C K ++ LT H R H G S G
Sbjct: 11 KCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG 46
Score = 27.9 bits (61), Expect = 1.1
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 229 HNGIKPFLCSMCAKCFSRKDDLNRHMKIH 257
K F C+ C K FS L +H +IH
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 27.1 bits (59), Expect = 2.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 172 AHEGIKPFQCSVCSESFTQRSNLNIHLRIH 201
+ + K F+C+ C ++F+ L H RIH
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 26.7 bits (58), Expect = 3.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 284 NHDGLKPFHCSVCFESFTQKALLNIHLRIHT 314
+ K F C+ C ++F+ L H RIHT
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 25.9 bits (56), Expect = 6.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 372 GVKPFKCSMCDEGFPKKSVLKEHLRV 397
K FKC+ C++ F L +H R+
Sbjct: 9 KEKCFKCNKCEKTFSCSKYLTQHERI 34
Score = 25.6 bits (55), Expect = 7.0
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 257 HEGSKRYLCTMCPKCFTRKDDLNRHMRNH 285
+ K + C C K F+ L +H R H
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 25.6 bits (55), Expect = 7.0
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 201 HDGIRPFQCNVCYICFTNKSDLNRHSRIH 229
+ F+CN C F+ L +H RIH
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN
nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A
{Haemophilus influenzae} PDB: 3zu0_A*
Length = 579
Score = 33.0 bits (75), Expect = 0.31
Identities = 17/120 (14%), Positives = 37/120 (30%), Gaps = 6/120 (5%)
Query: 493 VEKLTSEGVPAVQAYEHGE-----DAARDADILVTATYSSVPVL-KYEWLKKKDAHINAV 546
+ E V ++ + + + + + T VL L+ K++
Sbjct: 251 FKNPNGEPVFVMEGWAYSAVVGDLGVKFSPEGIASITRKIPHVLMSSHKLQVKNSEGKWA 310
Query: 547 GAGLNHHSELDAAIYSHSSIFFDSEAAARGELKGLYEQVPANMVGEVGGLIAANLTRDAR 606
+ + + S SI D A +L Y+ + E+ G+I +
Sbjct: 311 ELTGDERKKALDTLKSMKSISLDDHDAKTDKLIAKYKSEKDRLAQEIVGVITGSAMPGGS 370
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 31.2 bits (71), Expect = 0.32
Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 25/100 (25%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
F C C + ++ +K C+ C + C
Sbjct: 31 FCCFDCDSILAGEIYVMV------NDKPV-CKPCYVKNHAVV----------------CQ 67
Query: 155 VCSKTFTDKVKFNRHMRA--HEGIKPFQCSVCSESFTQRS 192
C +V+ + H + F CS CS+ +
Sbjct: 68 GCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQK 107
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 28.1 bits (62), Expect = 0.58
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 57 FKCNICPKRYARKNRLTNHLRT 78
F C CPKR+ R + L+ H++T
Sbjct: 3 FACPACPKRFMRSDALSKHIKT 24
Score = 28.1 bits (62), Expect = 0.70
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 94 SFTCSQCPKTFVDKWHLNRHLKS 116
+F C CPK F+ L++H+K+
Sbjct: 2 AFACPACPKRFMRSDALSKHIKT 24
Score = 25.4 bits (55), Expect = 6.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 235 FLCSMCAKCFSRKDDLNRHMK 255
F C C K F R D L++H+K
Sbjct: 3 FACPACPKRFMRSDALSKHIK 23
Score = 25.4 bits (55), Expect = 6.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 263 YLCTMCPKCFTRKDDLNRHMR 283
+ C CPK F R D L++H++
Sbjct: 3 FACPACPKRFMRSDALSKHIK 23
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 28.2 bits (62), Expect = 0.60
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K F C++CP+R + +T HLRTH
Sbjct: 2 KPFSCSLCPQRSRDFSAMTKHLRTH 26
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.72
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 330 QKSNLYIHLKLQHGVNPFKCDVCP----NETFE 358
+K L KLQ + + D P T E
Sbjct: 18 EKQALK---KLQASLKLYADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 3.0
Identities = 6/17 (35%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
Query: 51 KKMVKKFKCNICPKRYA 67
K+ +KK + ++ K YA
Sbjct: 19 KQALKKLQASL--KLYA 33
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.2 bits (62), Expect = 0.72
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
K QC C E F Q +L H +H G
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMG 37
Score = 25.9 bits (56), Expect = 5.1
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
K C C + F + L H +H G K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
Score = 25.5 bits (55), Expect = 8.1
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 314 TNSKPHACSICTESFSQKSNLYIHLKLQHG 343
+ K H C C E F Q +L H L G
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMG 37
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 27.8 bits (61), Expect = 0.83
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIHN 230
++C +C F KS L+RH R+H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
Score = 27.0 bits (59), Expect = 1.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 376 FKCSMCDEGFPKKSVLKEHLRVSHN 400
+KC +C+ F +KS L H RV N
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
Score = 26.3 bits (57), Expect = 3.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 179 FQCSVCSESFTQRSNLNIHLRIHD 202
++C +C SF ++S L+ H R+H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
Score = 25.9 bits (56), Expect = 3.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 291 FHCSVCFESFTQKALLNIHLRIHTN 315
+ C +C SF +K+ L+ H R+H N
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
Score = 25.1 bits (54), Expect = 7.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 151 FLCSVCSKTFTDKVKFNRHMRAHE 174
+ C +C ++F +K +RH R H+
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
Score = 25.1 bits (54), Expect = 7.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 263 YLCTMCPKCFTRKDDLNRHMRNHD 286
Y C +C + F K L+RH R H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 1.0
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 21/70 (30%)
Query: 15 EEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVKKFKCNICPKRYA---RKNR 71
EE+ K +++L D + E + KK ++++ +R + KN+
Sbjct: 92 EEQRKRLQEL-----------DAASKVMEQEWREKAKKDLEEWN-----QRQSEQVEKNK 135
Query: 72 LTNHLRTHEA 81
+ N R +
Sbjct: 136 INN--RIADK 143
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 29.9 bits (66), Expect = 1.0
Identities = 13/94 (13%), Positives = 23/94 (24%), Gaps = 9/94 (9%)
Query: 232 IKPFLCSMCAKCFSRKDDLNRHM--KIHEGS-KRYLCTMCPKCFTRKDDLNRHMRNHDGL 288
C +C+ + H + H +RY+ +
Sbjct: 30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDG 89
Query: 289 --KPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
+ C VC +F+ H K H
Sbjct: 90 EDRSKCCPVCNMTFSSPV----VAESHYIGKTHI 119
Score = 28.4 bits (62), Expect = 3.6
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 7/89 (7%)
Query: 204 IRPFQCNVCYICFTNKSDLNRH--SRIH-NGIKPFLCSMCAKCFSRKDDLNRHMKIHEGS 260
QC VC ++S H SR H N ++ ++ +
Sbjct: 30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDG 89
Query: 261 --KRYLCTMCPKCFTRKDDLNRHM--RNH 285
+ C +C F+ H + H
Sbjct: 90 EDRSKCCPVCNMTFSSPVVAESHYIGKTH 118
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 27.8 bits (61), Expect = 1.1
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 55 KKFKCNICPKRYARKNRLTNHLR-THEAGSGDEKSEGGE 92
K + C+IC KRY + L+ H +H A E E +
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYAHSHLAEEEGEDKEDSQ 44
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 31.0 bits (71), Expect = 1.3
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 490 KSLVEKLTSEGVPAVQAYEHGEDAARDADILVTATYSSVPVLKYEWLKK 538
L L E V ++ D +D++V+AT + PV+ + +++
Sbjct: 205 VELARDLGGEAVR----FDELVDHLARSDVVVSATAAPHPVIHVDDVRE 249
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 27.0 bits (59), Expect = 1.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHD 202
KP+ C C + F Q S L H+R HD
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHHD 26
Score = 26.2 bits (57), Expect = 2.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHE 80
K + C C KR+ + ++L NH+R H+
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHHD 26
Score = 25.4 bits (55), Expect = 5.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTHE 427
P+ C+ C K F + S L HI+ H+
Sbjct: 2 PYVCERCGKRFVQSSQLANHIRHHD 26
Score = 25.0 bits (54), Expect = 6.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHD 286
K Y+C C K F + L H+R+HD
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHHD 26
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.2 bits (59), Expect = 1.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 374 KPFKCSMCDEGFPKKSVLKEHL 395
KPFKCS+C+ KS LK H+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHM 29
Score = 26.8 bits (58), Expect = 2.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHD 202
KPF+CS+C + +SNL H+ H
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHS 33
Score = 26.0 bits (56), Expect = 3.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 403 PFKCDICFKLFTKKSNLRTHIKTH 426
PFKC +C KSNL+ H+ H
Sbjct: 9 PFKCSLCEYATRSKSNLKAHMNRH 32
Score = 24.8 bits (53), Expect = 9.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF CS+C K +L HM H K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 30.4 bits (69), Expect = 1.8
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 15 EEESKDIEKLVIEESASEDSDDEEDEDFENDENSSG 50
+ ++ +E +D +DE+D D +
Sbjct: 233 GDLLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDEN 268
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 26.6 bits (58), Expect = 2.4
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHD 202
KPF C+ C + FT +L +H H+
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 28.8 bits (64), Expect = 2.4
Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 371 HGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKL----FTKKSN-LRTHIKT 425
HG + C CD F H ++ H N L + K N +R T
Sbjct: 11 HGRQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLEFYGYIKLINFIRLKNPT 70
Query: 426 HEPIPCDKCPEIFEK 440
E + P +EK
Sbjct: 71 VEYMNSIYNPVPWEK 85
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 28.5 bits (64), Expect = 2.6
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 14/61 (22%)
Query: 151 FLCSVCSKTFTDKVK-----------FNRHMRAHEGIKPFQCSVCSESFTQRS-NLNIHL 198
C +C + + V + + +G P QC +C T+RS +
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKG--PSQCPLCKNDITKRSLQESTRF 79
Query: 199 R 199
Sbjct: 80 S 80
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens; HET: HEM;
3.20A {Geobacter sulfurreducens}
Length = 318
Score = 29.7 bits (64), Expect = 3.0
Identities = 25/173 (14%), Positives = 44/173 (25%), Gaps = 18/173 (10%)
Query: 96 TCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSV 155
F K + +++C +C + + + + D K C
Sbjct: 161 MTPPKTVNFKMKGVADAAFSHEFHLGMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGA 220
Query: 156 CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYIC 215
C + + H G+KP + + + + +IHL + C C
Sbjct: 221 CHNGKDAFSSASDCGKCHPGLKPAKLTYKTSVGEAYFDHDIHLSMFK---------CADC 271
Query: 216 FTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMC 268
T + S C C H S C C
Sbjct: 272 HTKVFKYRKGSAPATMADMEKGKSCGVC---------HNGKDAFSVADDCVKC 315
Score = 29.3 bits (63), Expect = 3.4
Identities = 44/296 (14%), Positives = 77/296 (26%), Gaps = 20/296 (6%)
Query: 91 GEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQC--RFDFYVKREYNRHMKIHDGV 148
+ + C C D R+ E C C + + ++ ++ H G
Sbjct: 25 KKYNNNCRICHIALFDLRKPKRYTMLDMEKGKS-CGACHTGMKAFSVADDSQCVRCHSGS 83
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQ 208
+ H+ EG +C C + ++ + +
Sbjct: 84 ARPVAYRMKGAGEAVFSHEVHVPMLEG----KCRTCHSNREI--TGGRNVTMAQMEKGKS 137
Query: 209 CNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMC 268
C C+ + + H G+ P F K + Y C C
Sbjct: 138 CGACHNDKMAFTVAGNCGKCHKGMTP----PKTVNFKMKGVADAAFSHEFHLGMYKCNEC 193
Query: 269 PKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESF 328
+ D K C C + + + H KP + T
Sbjct: 194 HTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKCHPGLKPAKLTYKTSVG 253
Query: 329 SQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKCSMCDEG 384
+ IH ++ FKC C + F+ S K C +C G
Sbjct: 254 EAYFDHDIH------LSMFKCADCHTKVFKYRKG-SAPATMADMEKGKSCGVCHNG 302
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 27.6 bits (62), Expect = 3.2
Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 17/64 (26%)
Query: 151 FLCSVCSKTFTDKV--------------KFNRHMRAHEGIKPFQCSVCSESFTQRS-NLN 195
C +C + T + ++ +G C VC S+ + N
Sbjct: 20 VTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKG--ESSCPVCRISYQPENIRPN 77
Query: 196 IHLR 199
H+
Sbjct: 78 RHVA 81
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein,
C2H2 type zinc-finger, structural genomics; NMR {Mus
musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 27.5 bits (61), Expect = 3.3
Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 376 FKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKS 417
F C+ C E K V K H+ N C C K F
Sbjct: 11 FTCNACGESVKKIQVEK-HVSNCRNCECLSCIDCGKDFWGDD 51
Score = 27.1 bits (60), Expect = 3.6
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 94 SFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMK 143
FTC+ C ++ V K + +H+ + + C C DF+ +Y H+K
Sbjct: 10 FFTCNACGES-VKKIQVEKHVSNCRNCECLSCIDCGKDFW-GDDYKSHVK 57
>1ryl_A Hypothetical protein YFBM; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.60A {Escherichia coli} SCOP:
d.276.1.1
Length = 167
Score = 28.9 bits (64), Expect = 3.3
Identities = 5/39 (12%), Positives = 13/39 (33%)
Query: 4 MSMMGKYVDANEEESKDIEKLVIEESASEDSDDEEDEDF 42
M M+G + + + E+ + + + D
Sbjct: 1 MGMIGYFAEIDSEKINQLLESTEKPLMDNIHDTLSGLRR 39
>3gwq_A D-serine deaminase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans
LB400}
Length = 426
Score = 29.3 bits (65), Expect = 3.5
Identities = 23/186 (12%), Positives = 48/186 (25%), Gaps = 18/186 (9%)
Query: 419 LRTHIKTHEPIPCDKCPEIFEKKTDLQEHVDKCHNLHEED--EEEGLDEFDA--PKEKSF 474
L H KT P++F ++ + H+ G+
Sbjct: 74 LAPHGKTT------MAPQLFRRQLETGAWGITLATAHQVRAAYHGGVSRVLMANQLVGRR 127
Query: 475 NCSKCLNIVRIP-VEIKSLVEKLTSEGVPAVQAYEHGEDAARDADILVTATYSSVPVLKY 533
N ++ P E LV+ + EGV + + + + + V
Sbjct: 128 NMMMVAELLSDPEFEFFCLVD--SVEGVEQLGEFFKSVNKQLQVLLELGVPGGRTGVRDA 185
Query: 534 EWLKKKDAHINAV-----GAGLNHHSELDAAIYSHSSIFFDSEAAARGELKGLYEQVPAN 588
I AG+ + + + + A R ++
Sbjct: 186 AQRNAVLEAITRYPDTLKLAGVELYEGVLKEEHEVREFLQSAVAVTRELVEQERFARAPA 245
Query: 589 MVGEVG 594
++ G
Sbjct: 246 VLSGAG 251
>3llx_A Predicted amino acid aldolase or racemase; structural genomics,
joint center for structural genomics, J protein
structure initiative; HET: LLP TRS; 1.50A {Idiomarina
loihiensis}
Length = 376
Score = 29.4 bits (65), Expect = 3.6
Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 6/39 (15%)
Query: 419 LRTHIKTHEPIPCDKCPEIFEKKTDLQEHVDKCHNLHEE 457
LR H+KT + E D + L E
Sbjct: 42 LRPHLKTL------RTLEAAGYLLDSKSAPATVSTLAEA 74
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 26.8 bits (58), Expect = 3.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 315 NSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+ +P C IC Q NL HL+L+H P
Sbjct: 21 SEQPATCPICYAVIRQSRNLRRHLELRHFAKP 52
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 29.6 bits (67), Expect = 3.7
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 6/28 (21%)
Query: 503 AVQAYEHG------EDAARDADILVTAT 524
A+QA G +DAA ADI+VT T
Sbjct: 283 ALQAAMDGFEVVTLDDAASTADIVVTTT 310
>2cvc_A Cytochrome CC3, high-molecular-weight cytochrome C precursor;
electron transport; HET: HEM; 2.00A {Desulfovibrio
vulgaris} SCOP: a.138.1.1 PDB: 1gws_A* 1h29_A*
Length = 545
Score = 29.4 bits (63), Expect = 4.2
Identities = 28/300 (9%), Positives = 59/300 (19%), Gaps = 32/300 (10%)
Query: 82 GSGDEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRH 141
K Q + + + FD
Sbjct: 252 AQAKFKVVREVPRLDRGQPDAALILPVPGKDAPREMKGT----MKPVAFDHKAHEAKAND 307
Query: 142 MKIHDGVKVFLCSVCSKTFTDKVKFNRHMR--AHEGIKPFQCSVC-SESFTQRSNLNIHL 198
+ V++ C+ C + H+ C C + Q + H
Sbjct: 308 CRTCHHVRIDTCTACHTVNGTADSKFVQLEKAMHQPDSMRSCVGCHNTRVQQPTCAGCHG 367
Query: 199 RIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHE 258
I QC VC H + + + +
Sbjct: 368 FIKPTKSDAQCGVC------------HVAAPGFDAKQVEAGALLNLKAEQRSQVAASMLS 415
Query: 259 GSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
+ T K + + + + H + +
Sbjct: 416 ARPQPKGTFDLNDIPEKVVIGSIAKEYQPSEFPHRKIVK-------------TLIAGIGE 462
Query: 319 HACSICTESFSQKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKC 378
+ H + P KC C + F+ + ++ + + C
Sbjct: 463 DKLAATFHIEKGTLCQGCHHNSPASLTPPKCASCHGKPFDADRGDRPGLKAAYHQQCMGC 522
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 26.9 bits (59), Expect = 4.2
Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 363 LSLHMRTVHGVKPFKCSMCDEGFPKKSVLKEHLRVSHNVNPFKCDICFKLFTKKSNLRTH 422
S H T ++ C CD LKEH C C + K +L+TH
Sbjct: 5 SSGHEETECPLRLAVCQHCDLELSILK-LKEHEDYCGAR-TELCGNCGRNVLVK-DLKTH 61
Query: 423 IKTHE 427
+
Sbjct: 62 PEVCG 66
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 29.4 bits (66), Expect = 4.4
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 6/30 (20%)
Query: 501 VPAVQAYEHG------EDAARDADILVTAT 524
+ A+QA G E+A DADI+VTAT
Sbjct: 308 INALQAMMEGFDVVTVEEAIGDADIVVTAT 337
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 26.8 bits (60), Expect = 5.7
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 16/64 (25%)
Query: 151 FLCSVCSKTFTDKV--------------KFNRHMRAHEGIKPFQCSVCSESFTQRS-NLN 195
C +C + T+ + N+ G C VC S++ N
Sbjct: 13 VTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMG-GKSSCPVCGISYSFEHLQAN 71
Query: 196 IHLR 199
HL
Sbjct: 72 QHLA 75
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle
transport, cytoplasm, endoplasmic reticulum, ER-golgi
transport, golgi apparatus; 2.35A {Homo sapiens}
Length = 766
Score = 29.1 bits (64), Expect = 5.7
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 206 PFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLC 265
P + + + + + H P C+ C + M+ EG +R+ C
Sbjct: 66 PLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAY------MCPFMQFIEGGRRFQC 119
Query: 266 TMCPKCF 272
C
Sbjct: 120 CFCSCIN 126
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase,
effector protein, T201A, aromatic hydrocarbons
catabolism, FAD, flavoprotein; 1.52A {Pseudomonas
mendocina} PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A
3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A*
3ri7_A
Length = 500
Score = 28.9 bits (64), Expect = 5.8
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 223 NRHSRIHNGIKPFLCSMC--AKCFSRKDDLNRHMKI--HEGSKRYLCT-MCPKCF 272
+R + P +C+M DD N + H G + + + F
Sbjct: 383 DRMDLVSPETLPSVCNMSQIPLVGVPGDDWNIEVFSLEHNGRLYHFGSEVDRWVF 437
>3qwn_A Hypothetical NIGD-like protein; SH3-like barrel fold, structural
genomics, joint center for structural genomics, JCSG;
2.42A {Bacteroides caccae}
Length = 214
Score = 28.4 bits (63), Expect = 6.0
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 306 LNIHLRIHTNS-KPHACSICTESFSQKSNLYIHLKLQHGVN 345
LN+ L + N K H I + ++N +++ L H N
Sbjct: 112 LNMILNLKVNGGKQHVFGIVEDLSEFETNGTVNMLLYHDAN 152
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 25.5 bits (55), Expect = 6.6
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 203 GIRPFQCNVCYICFT-NKSDLNRHSRIHNGIK 233
R +C C F N SDL RH H G+K
Sbjct: 6 SGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK 37
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 28.8 bits (65), Expect = 6.7
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 6/28 (21%)
Query: 503 AVQAYEHG------EDAARDADILVTAT 524
A+QA G ED +A I VT T
Sbjct: 247 ALQAAMEGYQVLLVEDVVEEAHIFVTTT 274
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 26.2 bits (58), Expect = 6.8
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 13/53 (24%)
Query: 151 FLCSVCSKTFTDKVK-----------FNRHMRAHEGIKPFQCSVCSESFTQRS 192
+C +C V + G F+C +C S + +
Sbjct: 21 VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCG--FFKCPLCKTSVRKNA 71
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 28.6 bits (63), Expect = 7.0
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 240 CAKCFSRKDDLNRHMKIHEGSKRYLCTMC 268
C +C S +N + E +R+ C C
Sbjct: 231 CRRCRSY---MNPFVTFIEQGRRWRCNFC 256
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 28.6 bits (63), Expect = 7.2
Identities = 6/45 (13%), Positives = 12/45 (26%)
Query: 443 DLQEHVDKCHNLHEEDEEEGLDEFDAPKEKSFNCSKCLNIVRIPV 487
DL + H + +E + + C C +
Sbjct: 302 DLTGLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVK 346
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex,
NAD cofactor, regul SAM-dependent methylation reactions;
HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A*
3onf_A*
Length = 488
Score = 28.6 bits (64), Expect = 7.3
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 503 AVQAYEHG------EDAARDADILVTAT 524
A+QA G ED +ADI VT T
Sbjct: 301 ALQATMEGLQVLTLEDVVSEADIFVTTT 328
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 28.2 bits (63), Expect = 8.1
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
Query: 503 AVQAYEHG------EDAARDADILVTAT 524
A+QA G E AA ADI VTAT
Sbjct: 313 ALQAAMEGYRVVTMEYAADKADIFVTAT 340
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL
binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus
gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Length = 376
Score = 28.2 bits (62), Expect = 8.5
Identities = 11/39 (28%), Positives = 12/39 (30%), Gaps = 6/39 (15%)
Query: 419 LRTHIKTHEPIPCDKCPEIFEKKTDLQEHVDKCHNLHEE 457
LR H+KTH K E T L E
Sbjct: 40 LRPHVKTH------KTLEGGLLATGGTRRGIAVSTLAEA 72
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium
falciparum} SCOP: c.2.1.4 c.23.12.3
Length = 479
Score = 28.2 bits (63), Expect = 8.7
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 6/30 (20%)
Query: 501 VPAVQAYEHG------EDAARDADILVTAT 524
+ A+QA G ++ D +T T
Sbjct: 291 ICAIQAVMEGFNVVTLDEIVDKGDFFITCT 320
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 28.3 bits (62), Expect = 8.7
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 39 DEDFEND-ENSSGKKMVKKFKCNICPKRYARKNRLTNHLRT 78
DFE+ S + K C C + + + +HL
Sbjct: 274 KSDFEHSYCRGSLRSEAKGIYCPFCSRWFKTSSVFESHLVG 314
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 28.1 bits (63), Expect = 9.1
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 511 EDAARDADILVTATYSSVPVLKYEWLKKKDAHINAVG 547
+ + D+D+++T S E++K+ IN
Sbjct: 240 KKCSLDSDVVITGVPSENYKFPTEYIKEGAVCIN-FA 275
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 28.0 bits (61), Expect = 9.3
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 7 MGKYVDANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVKK 56
G ++ EE ++ +E E+ DD+ + ++ E++ +
Sbjct: 361 TGAALEFEFEEDEEEA----DEDEDEEEDDDHGLEDDDGESAEEQDDFAG 406
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 27.0 bits (59), Expect = 9.4
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 85 DEKSEGGEGSFTCSQCPKTFVDKWHLNRHLKS 116
D GG G C C + F+D +L H +S
Sbjct: 42 DPDLPGG-GLHRCLACARYFIDSTNLKTHFRS 72
>2e84_A High-molecular-weight cytochrome C; cytochrome C3 motifs, electron
transport; HET: HEM; 2.70A {Desulfovibrio vulgaris str}
Length = 556
Score = 28.2 bits (60), Expect = 9.5
Identities = 40/349 (11%), Positives = 81/349 (23%), Gaps = 11/349 (3%)
Query: 40 EDFENDENSSGKKMVKKFKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQ 99
++ K+ C C + + + H +S +
Sbjct: 186 HVYDEAAKKLSWVKNKEDSCRACHGDARVEKKPSLREAAHTQCITCHRSVAAAPA-KADS 244
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKRE-YNRHMKIHDGVKVFLCSVCSK 158
P + K V R E+ + D + K +
Sbjct: 245 GPVSCAGCHDPAMQAKFKVVRDVPRLERGQPDAAMVLPVVGPGAKDTPKGMKGAMKPVAF 304
Query: 159 TFTDKVKFNRHMRAHEGIKPFQCSVC--SESFTQRSNLNIHLRIHDGIRPFQCNVCYICF 216
+ RA +K C+ C E + + I +H C C+
Sbjct: 305 NHKVHEAASNTCRACHHVKIDNCTTCHTLEGVKDGNFVQIEKAMHQPDSMKSCVGCHNQK 364
Query: 217 TNKSD-LNRHSRIHNGIKPFLCSMCAKC----FSRKDDLNRHMKIHEGSKRYLCTMCPKC 271
H + G KP + C C + + +K +
Sbjct: 365 VQAPACAGCHGFMKTGAKPQPEAACGVCHADPVGMDAKTVADGGLLKATKEQRADVAAAT 424
Query: 272 FTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLN--IHLRIHTNSKPHACSICTESFS 329
+ + D + V + + L + I + + +
Sbjct: 425 LAARRTTKGTLPADDIPEFVTIGVLSDKYEPSKLPHRKIVNTLMAAIGDDKLAGTFHTDK 484
Query: 330 QKSNLYIHLKLQHGVNPFKCDVCPNETFEKETQLSLHMRTVHGVKPFKC 378
H P KC C + F+ ++ + + C
Sbjct: 485 ATVCAGCHHNSPASKTPPKCASCHGQPFDAAKGDRPGLKAAYHQQCMGC 533
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding
protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB:
2ab7_A
Length = 29
Score = 24.6 bits (53), Expect = 9.7
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 150 VFLCSV--CSKTFTDKVKFNRHMRAHEG 175
V++C C ++F D+ K NRH + H G
Sbjct: 2 VYVCHFENCGRSFNDRRKLNRHKKIHTG 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.419
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,263,669
Number of extensions: 555648
Number of successful extensions: 4931
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4010
Number of HSP's successfully gapped: 2025
Length of query: 617
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 518
Effective length of database: 3,937,614
Effective search space: 2039684052
Effective search space used: 2039684052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.3 bits)