BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13390
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 255 bits (652), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 119/136 (87%), Positives = 131/136 (96%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEFGARM+ IDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRRETFNHLT+W
Sbjct: 56 VEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSW 115
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
LEDARQHS+SNMVIMLIGNKSDL++RR+VK+EEGE FAREHGL+FMETSAK A NVEEAF
Sbjct: 116 LEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175
Query: 220 IDTAKEIYEKIQEGVF 235
I+TAKEIY KIQ+G+F
Sbjct: 176 INTAKEIYRKIQQGLF 191
Score = 113 bits (283), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 61/65 (93%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
MVIMLIGNKSDL++RR+VK+EEGE FAREHGL+FMETSAK A NVEEAFI+TAKEIY KI
Sbjct: 127 MVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186
Query: 61 QEGVF 65
Q+G+F
Sbjct: 187 QQGLF 191
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 255 bits (651), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 121/130 (93%), Positives = 128/130 (98%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRR+TFNHLTTW
Sbjct: 45 VEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTW 104
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
LEDARQHSNSNMVIMLIGNKSDL++RREVKKEEGE FAREHGL+FMETSAK A+NVEEAF
Sbjct: 105 LEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 164
Query: 220 IDTAKEIYEK 229
I+TAKEIYEK
Sbjct: 165 INTAKEIYEK 174
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/59 (88%), Positives = 57/59 (96%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
MVIMLIGNKSDL++RREVKKEEGE FAREHGL+FMETSAK A+NVEEAFI+TAKEIYEK
Sbjct: 116 MVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEK 174
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 85/132 (64%), Positives = 110/132 (83%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEFG R+I + G++IKLQIWDTAGQ FR++TRSYYRGAAGAL+VYDITRR T+NHL++W
Sbjct: 65 VEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 124
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L DAR +N N VI+LIGNK+DL+A+R+V EE + FA E+GL+F+E SAK NVE+AF
Sbjct: 125 LTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 184
Query: 220 IDTAKEIYEKIQ 231
++ AK+IY+ IQ
Sbjct: 185 LEAAKKIYQNIQ 196
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 49/60 (81%)
Query: 2 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 61
VI+LIGNK+DL+A+R+V EE + FA E+GL+F+E SAK NVE+AF++ AK+IY+ IQ
Sbjct: 137 VIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQ 196
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 186 bits (473), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 109/129 (84%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEFG R+I + G++IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL++W
Sbjct: 50 VEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 109
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L DAR +N N VI+LIGNK+DL+A+R+V EE + FA E+GL+F+E SAK NVE+AF
Sbjct: 110 LTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 169
Query: 220 IDTAKEIYE 228
++ AK+IY+
Sbjct: 170 LEAAKKIYQ 178
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 47/57 (82%)
Query: 2 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
VI+LIGNK+DL+A+R+V EE + FA E+GL+F+E SAK NVE+AF++ AK+IY+
Sbjct: 122 VIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 177 bits (450), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/137 (62%), Positives = 105/137 (76%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEFG+++I + GK +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N LT W
Sbjct: 45 VEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW 104
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L DAR ++ N+VI+L GNK DLDA REV E FA+E+ L+F+ETSA NVEEAF
Sbjct: 105 LTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAF 164
Query: 220 IDTAKEIYEKIQEGVFD 236
+ A++I KI+ G D
Sbjct: 165 VQCARKILNKIESGELD 181
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 45/66 (68%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+VI+L GNK DLDA REV E FA+E+ L+F+ETSA NVEEAF+ A++I KI
Sbjct: 116 IVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 175
Query: 61 QEGVFD 66
+ G D
Sbjct: 176 ESGELD 181
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 174 bits (441), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 83/137 (60%), Positives = 101/137 (73%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEFG+R++ + GK +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L W
Sbjct: 60 VEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAW 119
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L DAR ++ N+V++L GNK DLD REV E FA+E+ L+F+ETSA NVEEAF
Sbjct: 120 LTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179
Query: 220 IDTAKEIYEKIQEGVFD 236
+ A+ I KI G D
Sbjct: 180 LKCARTILNKIDSGELD 196
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 42/66 (63%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+V++L GNK DLD REV E FA+E+ L+F+ETSA NVEEAF+ A+ I KI
Sbjct: 131 IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190
Query: 61 QEGVFD 66
G D
Sbjct: 191 DSGELD 196
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 170 bits (430), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 82/130 (63%), Positives = 101/130 (77%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEFG+++I + GK +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N LT W
Sbjct: 46 VEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW 105
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L DAR ++ N+VI+L GNK DLDA REV E FA+E+ L+F+ETSA +VEEAF
Sbjct: 106 LTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAF 165
Query: 220 IDTAKEIYEK 229
+ A++I K
Sbjct: 166 VQCARKILNK 175
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 41/59 (69%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
+VI+L GNK DLDA REV E FA+E+ L+F+ETSA +VEEAF+ A++I K
Sbjct: 117 IVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 175
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 167 bits (423), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 81/130 (62%), Positives = 100/130 (76%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEFG+++I + GK +KLQIWDTAG E FRS+TRSYYRGAAGALLVYDIT RET+N LT W
Sbjct: 43 VEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW 102
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L DAR ++ N+VI+L GNK DLDA REV E FA+E+ L+F+ETSA +VEEAF
Sbjct: 103 LTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAF 162
Query: 220 IDTAKEIYEK 229
+ A++I K
Sbjct: 163 VQCARKILNK 172
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 41/59 (69%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
+VI+L GNK DLDA REV E FA+E+ L+F+ETSA +VEEAF+ A++I K
Sbjct: 114 IVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 172
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 94/133 (70%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEF R I +DGK IK QIWDTAGQE +R IT +YYRGA GALLVYDI + T+ ++ W
Sbjct: 40 VEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERW 99
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ R H++SN+VIML+GNKSDL R V +E FA ++ L F+ETSA +TNVEEAF
Sbjct: 100 LKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 159
Query: 220 IDTAKEIYEKIQE 232
+ EIY + +
Sbjct: 160 KNILTEIYRIVSQ 172
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 41/62 (66%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+VIML+GNKSDL R V +E FA ++ L F+ETSA +TNVEEAF + EIY +
Sbjct: 111 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 170
Query: 61 QE 62
+
Sbjct: 171 SQ 172
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 150 bits (379), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 73/128 (57%), Positives = 92/128 (71%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEF R I +DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYDI + T+ ++ W
Sbjct: 55 VEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 114
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ R H++SN+VIML+GNKSDL R V +E FA ++GL F+ETSA +TNVE AF
Sbjct: 115 LKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 174
Query: 220 IDTAKEIY 227
EIY
Sbjct: 175 QTILTEIY 182
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 38/57 (66%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
+VIML+GNKSDL R V +E FA ++GL F+ETSA +TNVE AF EIY
Sbjct: 126 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 182
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 150 bits (378), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 73/128 (57%), Positives = 92/128 (71%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEF R I +DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYDI + T+ ++ W
Sbjct: 64 VEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 123
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ R H++SN+VIML+GNKSDL R V +E FA ++GL F+ETSA +TNVE AF
Sbjct: 124 LKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183
Query: 220 IDTAKEIY 227
EIY
Sbjct: 184 QTILTEIY 191
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 38/57 (66%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
+VIML+GNKSDL R V +E FA ++GL F+ETSA +TNVE AF EIY
Sbjct: 135 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 147 bits (371), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 72/128 (56%), Positives = 91/128 (71%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEF R I +DGK IK QIWDTAG E +R+IT +YYRGA GALLVYDI + T+ ++ W
Sbjct: 43 VEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 102
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ R H++SN+VIML+GNKSDL R V +E FA ++GL F+ETSA +TNVE AF
Sbjct: 103 LKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 162
Query: 220 IDTAKEIY 227
EIY
Sbjct: 163 QTILTEIY 170
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 38/57 (66%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
+VIML+GNKSDL R V +E FA ++GL F+ETSA +TNVE AF EIY
Sbjct: 114 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 170
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 72/128 (56%), Positives = 91/128 (71%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEF R I +DGK IK QIWDTAG E +R+IT +YYRGA GALLVYDI + T+ ++ W
Sbjct: 64 VEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 123
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ R H++SN+VIML+GNKSDL R V +E FA ++GL F+ETSA +TNVE AF
Sbjct: 124 LKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183
Query: 220 IDTAKEIY 227
EIY
Sbjct: 184 QTILTEIY 191
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 38/57 (66%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
+VIML+GNKSDL R V +E FA ++GL F+ETSA +TNVE AF EIY
Sbjct: 135 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/128 (55%), Positives = 90/128 (70%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEF R I +DGK IK QIWDTAG E +R+IT +YYRGA GALLVYDI + T+ ++ W
Sbjct: 40 VEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 99
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ R H++SN+VI L+GNKSDL R V +E FA ++GL F+ETSA +TNVE AF
Sbjct: 100 LKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 159
Query: 220 IDTAKEIY 227
EIY
Sbjct: 160 QTILTEIY 167
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 37/57 (64%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
+VI L+GNKSDL R V +E FA ++GL F+ETSA +TNVE AF EIY
Sbjct: 111 IVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/128 (55%), Positives = 90/128 (70%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEF R I +DGK IK QIWDTAG E +R+IT +YYRGA GALLVYDI + T+ ++ W
Sbjct: 46 VEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 105
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ R H++SN+VI L+GNKSDL R V +E FA ++GL F+ETSA +TNVE AF
Sbjct: 106 LKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 165
Query: 220 IDTAKEIY 227
EIY
Sbjct: 166 QTILTEIY 173
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 37/57 (64%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
+VI L+GNKSDL R V +E FA ++GL F+ETSA +TNVE AF EIY
Sbjct: 117 IVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 144 bits (362), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 98/133 (73%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
++F R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT ++F+++ W
Sbjct: 41 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 100
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
+ + +H+++++ M++GNK D++ +R+V KE GE A ++G+ FMETSAK NVE AF
Sbjct: 101 IRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 160
Query: 220 IDTAKEIYEKIQE 232
A++I K+ +
Sbjct: 161 FTLARDIKAKMDK 173
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%)
Query: 4 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 62
M++GNK D++ +R+V KE GE A ++G+ FMETSAK NVE AF A++I K+ +
Sbjct: 115 MILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 173
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 143 bits (361), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 98/133 (73%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
++F R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT ++F+++ W
Sbjct: 43 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
+ + +H+++++ M++GNK D++ +R+V KE GE A ++G+ FMETSAK NVE AF
Sbjct: 103 IRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162
Query: 220 IDTAKEIYEKIQE 232
A++I K+ +
Sbjct: 163 FTLARDIKAKMDK 175
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%)
Query: 4 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 62
M++GNK D++ +R+V KE GE A ++G+ FMETSAK NVE AF A++I K+ +
Sbjct: 117 MILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 175
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 97/138 (70%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEF R + I+GK+IK QIWDTAGQE +R+IT +YYRGA GAL+VYDI++ ++ + W
Sbjct: 48 VEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHW 107
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L + R++++ N+ + LIGNKSDL R V EE + FA+E+ L+F ETSA + NV++AF
Sbjct: 108 LSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAF 167
Query: 220 IDTAKEIYEKIQEGVFDI 237
+ IY+K+ + D+
Sbjct: 168 EELINTIYQKVSKHQMDL 185
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+ + LIGNKSDL R V EE + FA+E+ L+F ETSA + NV++AF + IY+K+
Sbjct: 119 VAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKV 178
Query: 61 QEGVFDITN-EANG 73
+ D+ + ANG
Sbjct: 179 SKHQMDLGDSSANG 192
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 140 bits (352), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 96/134 (71%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ W
Sbjct: 51 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 110
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ ++++ N+ +L+GNK DL ++ V + FA G+ F+ETSAK ATNVE++F
Sbjct: 111 LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 170
Query: 220 IDTAKEIYEKIQEG 233
+ A EI +++ G
Sbjct: 171 MTMAAEIKKRMGPG 184
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 4 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEG 63
+L+GNK DL ++ V + FA G+ F+ETSAK ATNVE++F+ A EI +++ G
Sbjct: 125 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG 184
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 92/133 (69%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEF R + + +K QIWDTAG E +R+IT +YYRGA GALLV+D+T+ +T+ + W
Sbjct: 60 VEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERW 119
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ H+ + +V+ML+GNKSDL REV EE +FA +GL+F+ETSA +TNVE AF
Sbjct: 120 LKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 179
Query: 220 IDTAKEIYEKIQE 232
KEI+ K+ +
Sbjct: 180 ETVLKEIFAKVSK 192
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 44/62 (70%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+V+ML+GNKSDL REV EE +FA +GL+F+ETSA +TNVE AF KEI+ K+
Sbjct: 131 IVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190
Query: 61 QE 62
+
Sbjct: 191 SK 192
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 92/133 (69%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEF R + + +K QIWDTAG E +R+IT +YYRGA GALLV+D+T+ +T+ + W
Sbjct: 45 VEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERW 104
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ H+ + +V+ML+GNKSDL REV EE +FA +GL+F+ETSA +TNVE AF
Sbjct: 105 LKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 164
Query: 220 IDTAKEIYEKIQE 232
KEI+ K+ +
Sbjct: 165 ETVLKEIFAKVSK 177
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 44/62 (70%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+V+ML+GNKSDL REV EE +FA +GL+F+ETSA +TNVE AF KEI+ K+
Sbjct: 116 IVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 175
Query: 61 QE 62
+
Sbjct: 176 SK 177
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 92/128 (71%), Gaps = 1/128 (0%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F + + I GK++KLQIWDTAGQE FR+IT+SYYR A GA+L YDIT+R +F + W
Sbjct: 64 VDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHW 123
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATNVEEA 218
+ED R+++ SN+V +LIGNKSDL REV E + A + L +ETSAK ++NVEEA
Sbjct: 124 IEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEA 183
Query: 219 FIDTAKEI 226
F+ A E+
Sbjct: 184 FLRVATEL 191
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEI 56
+V +LIGNKSDL REV E + A + L +ETSAK ++NVEEAF+ A E+
Sbjct: 135 IVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 95/131 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ W
Sbjct: 51 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 110
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ ++++ N+ +L+GNK DL ++ V + FA G+ F+ETSAK ATNVE++F
Sbjct: 111 LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 170
Query: 220 IDTAKEIYEKI 230
+ A EI +++
Sbjct: 171 MTMAAEIKKRM 181
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 4 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+L+GNK DL ++ V + FA G+ F+ETSAK ATNVE++F+ A EI +++
Sbjct: 125 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 95/131 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ W
Sbjct: 41 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 100
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ ++++ N+ +L+GNK DL ++ V + FA G+ F+ETSAK ATNVE++F
Sbjct: 101 LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 160
Query: 220 IDTAKEIYEKI 230
+ A EI +++
Sbjct: 161 MTMAAEIKKRM 171
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 4 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+L+GNK DL ++ V + FA G+ F+ETSAK ATNVE++F+ A EI +++
Sbjct: 115 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 95/131 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ W
Sbjct: 34 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 93
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ ++++ N+ +L+GNK DL ++ V + FA G+ F+ETSAK ATNVE++F
Sbjct: 94 LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 153
Query: 220 IDTAKEIYEKI 230
+ A EI +++
Sbjct: 154 MTMAAEIKKRM 164
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 4 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+L+GNK DL ++ V + FA G+ F+ETSAK ATNVE++F+ A EI +++
Sbjct: 108 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 95/131 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ W
Sbjct: 41 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 100
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ ++++ N+ +L+GNK DL ++ V + FA G+ F+ETSAK ATNVE++F
Sbjct: 101 LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 160
Query: 220 IDTAKEIYEKI 230
+ A EI +++
Sbjct: 161 MTMAAEIKKRM 171
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 4 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+L+GNK DL ++ V + FA G+ F+ETSAK ATNVE++F+ A EI +++
Sbjct: 115 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 95/131 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ W
Sbjct: 60 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 119
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ ++++ N+ +L+GNK DL ++ V + FA G+ F+ETSAK ATNVE++F
Sbjct: 120 LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 179
Query: 220 IDTAKEIYEKI 230
+ A EI +++
Sbjct: 180 MTMAAEIKKRM 190
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 4 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+L+GNK DL ++ V + FA G+ F+ETSAK ATNVE++F+ A EI +++
Sbjct: 134 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 190
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 137 bits (345), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 96/132 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F R I+++ K +KLQIWDTAGQE FR+IT SYYRGA G ++VYD+T R++F+++ W
Sbjct: 44 VDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQW 103
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
+++ +++ N+ +L+GNK DL ++R V +EG A HG+ F+ETSAK A NVE+AF
Sbjct: 104 IQEIDRYAMENVNKLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAF 163
Query: 220 IDTAKEIYEKIQ 231
A EI +++Q
Sbjct: 164 HTMAGEIKKRVQ 175
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 4 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 61
+L+GNK DL ++R V +EG A HG+ F+ETSAK A NVE+AF A EI +++Q
Sbjct: 118 LLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ 175
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 136 bits (343), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 91/127 (71%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ W
Sbjct: 68 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 127
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ ++++ N+ +L+GNK DL ++ V + FA G+ F+ETSAK ATNVE++F
Sbjct: 128 LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187
Query: 220 IDTAKEI 226
A EI
Sbjct: 188 XTXAAEI 194
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 4 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+L+GNK DL ++ V + FA G+ F+ETSAK ATNVE++F A EI
Sbjct: 142 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 136 bits (343), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 95/131 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E++ ++ W
Sbjct: 44 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQW 103
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ ++++ N+ +L+GNKSDL ++ V + FA G+ F+ETSAK ATNVE+AF
Sbjct: 104 LQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163
Query: 220 IDTAKEIYEKI 230
+ A EI +++
Sbjct: 164 MTMAAEIKKRM 174
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 39/57 (68%)
Query: 4 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+L+GNKSDL ++ V + FA G+ F+ETSAK ATNVE+AF+ A EI +++
Sbjct: 118 LLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 95/131 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E++ ++ W
Sbjct: 44 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQW 103
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ ++++ N+ +L+GNKSDL ++ V + FA G+ F+ETSAK ATNVE+AF
Sbjct: 104 LQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163
Query: 220 IDTAKEIYEKI 230
+ A EI +++
Sbjct: 164 MTMAAEIKKRM 174
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 39/57 (68%)
Query: 4 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+L+GNKSDL ++ V + FA G+ F+ETSAK ATNVE+AF+ A EI +++
Sbjct: 118 LLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
++F + + I+GK++KLQIWDTAGQE FR+IT +YYRGA G +LVYDIT TF ++ W
Sbjct: 38 IDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQW 97
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
+ +H+N ++L+GNKSD++ R V ++GE A+E G+ F+E+SAK NV E F
Sbjct: 98 FKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
Query: 220 IDTAKEIYEKI 230
AK I EKI
Sbjct: 157 FTLAKLIQEKI 167
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
++L+GNKSD++ R V ++GE A+E G+ F+E+SAK NV E F AK I EKI
Sbjct: 111 LLLVGNKSDMETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 94/131 (71%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ W
Sbjct: 43 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 102
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ ++++ N+ +L+G K DL ++ V + FA G+ F+ETSAK ATNVE++F
Sbjct: 103 LQEIDRYASENVNKLLVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 162
Query: 220 IDTAKEIYEKI 230
+ A EI +++
Sbjct: 163 MTMAAEIKKRM 173
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 4 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+L+G K DL ++ V + FA G+ F+ETSAK ATNVE++F+ A EI +++
Sbjct: 117 LLVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 173
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 133 bits (335), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 91/129 (70%), Gaps = 1/129 (0%)
Query: 100 VEFGARMITI-DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
VEF + I + + K IK QIWDTAGQE +R+IT +YYRGA GALLVYDIT++ +F ++
Sbjct: 42 VEFATKSIQLKNNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEK 101
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
WL++ R +++SN+VI+L+GNKSDL R + + +A++ L F+ETSA ATNVE A
Sbjct: 102 WLKELRDNADSNIVILLVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELA 161
Query: 219 FIDTAKEIY 227
F EIY
Sbjct: 162 FHQLLNEIY 170
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
+VI+L+GNKSDL R + + +A++ L F+ETSA ATNVE AF EIY
Sbjct: 114 IVILLVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIY 170
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 133 bits (334), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 96/133 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F + + +DGK +KLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +E+FN + W
Sbjct: 43 VDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW 102
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ +++ S ++ +L+GNK DL +R V+ + + FA + + F+ETSA +TNVE+AF
Sbjct: 103 LQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162
Query: 220 IDTAKEIYEKIQE 232
+ A++I E + +
Sbjct: 163 LTMARQIKESMSQ 175
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 40/59 (67%)
Query: 4 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 62
+L+GNK DL +R V+ + + FA + + F+ETSA +TNVE+AF+ A++I E + +
Sbjct: 117 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQ 175
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 96/133 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F + + +DGK +KLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +E+FN + W
Sbjct: 43 VDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW 102
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ +++ S ++ +L+GNK DL +R V+ + + FA + + F+ETSA +TNVE+AF
Sbjct: 103 LQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162
Query: 220 IDTAKEIYEKIQE 232
+ A++I E + +
Sbjct: 163 LTMARQIKESMSQ 175
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 40/59 (67%)
Query: 4 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 62
+L+GNK DL +R V+ + + FA + + F+ETSA +TNVE+AF+ A++I E + +
Sbjct: 117 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQ 175
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 89/131 (67%), Gaps = 1/131 (0%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
++F + + I+GK++KLQIWDTAGQE FR+IT +YYRGA G +LVYDIT TF ++ W
Sbjct: 38 IDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQW 97
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
+ +H+N ++L+GNKSD + R V ++GE A+E G+ F+E+SAK NV E F
Sbjct: 98 FKTVNEHANDEAQLLLVGNKSDXETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
Query: 220 IDTAKEIYEKI 230
AK I EKI
Sbjct: 157 FTLAKLIQEKI 167
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
++L+GNKSD + R V ++GE A+E G+ F+E+SAK NV E F AK I EKI
Sbjct: 111 LLLVGNKSDXETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
++F + + I+GK++KLQ+WDTAGQE FR+IT +YYRGA G +LVYD+T TF ++ W
Sbjct: 42 IDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQW 101
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
+ +H+N ++L+GNKSD++ R V ++GE A+E G+ F+E+SAK NV E F
Sbjct: 102 FKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 160
Query: 220 IDTAKEIYEKI 230
AK I EKI
Sbjct: 161 FTLAKLIQEKI 171
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
++L+GNKSD++ R V ++GE A+E G+ F+E+SAK NV E F AK I EKI
Sbjct: 115 LLLVGNKSDMETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 171
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 91/127 (71%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
++F +++ +DG ++KLQ+WDTAGQE FRS+T +YYR A LL+YD+T + +F+++ W
Sbjct: 46 IDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAW 105
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L + +++ ++ +ML+GNK D R VK+E+GE A+E+GL FMETSAK NV+ AF
Sbjct: 106 LTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165
Query: 220 IDTAKEI 226
AKE+
Sbjct: 166 TAIAKEL 172
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 39/56 (69%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+ +ML+GNK D R VK+E+GE A+E+GL FMETSAK NV+ AF AKE+
Sbjct: 117 VALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
++F + + I+GK++KLQ+WDTAGQE FR+IT +YYRGA G +LVYD+T TF ++ W
Sbjct: 55 IDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQW 114
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
+ +H+N ++L+GNKSD++ R V ++GE A+E G+ F+E+SAK NV E F
Sbjct: 115 FKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 173
Query: 220 IDTAKEIYEKI 230
AK I EKI
Sbjct: 174 FTLAKLIQEKI 184
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
++L+GNKSD++ R V ++GE A+E G+ F+E+SAK NV E F AK I EKI
Sbjct: 128 LLLVGNKSDMETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 94/129 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F + + +DGK +KLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +E+FN + W
Sbjct: 56 VDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW 115
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L++ +++ S ++ +L+GNK DL +R V+ + + FA + + F+ETSA +TNVE+AF
Sbjct: 116 LQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 175
Query: 220 IDTAKEIYE 228
+ A++I E
Sbjct: 176 LTMARQIKE 184
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 4 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
+L+GNK DL +R V+ + + FA + + F+ETSA +TNVE+AF+ A++I E
Sbjct: 130 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 184
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 89/131 (67%), Gaps = 1/131 (0%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
++F + + I+GK++KLQ+WDTAGQE FR+IT +YYRGA G +LVYD+T TF ++ W
Sbjct: 38 IDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQW 97
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
+ +H+N ++L+GNKSD + R V ++GE A+E G+ F+E+SAK NV E F
Sbjct: 98 FKTVNEHANDEAQLLLVGNKSDXETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
Query: 220 IDTAKEIYEKI 230
AK I EKI
Sbjct: 157 FTLAKLIQEKI 167
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
++L+GNKSD + R V ++GE A+E G+ F+E+SAK NV E F AK I EKI
Sbjct: 111 LLLVGNKSDXETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 88/127 (69%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F + + I+G+++KLQIWDTAGQE FRSIT+SYYR A +L YDIT E+F L W
Sbjct: 61 VDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEW 120
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L + Q++++ ++ +L+GNK DL RREV ++ E F+ + ++ETSAK + NVE+ F
Sbjct: 121 LREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180
Query: 220 IDTAKEI 226
+D A +
Sbjct: 181 LDLACRL 187
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++ +L+GNK DL RREV ++ E F+ + ++ETSAK + NVE+ F+D A +
Sbjct: 132 VITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 127 bits (318), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 97/146 (66%), Gaps = 6/146 (4%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEF R I ++ K+IK QIWDTAG E +R+IT +YYRGA GAL+VYDI++ ++ + W
Sbjct: 45 VEFATRTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHW 104
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L + R++++ N+ + LIGNKSDL R V +E + FA E+ ++F ETSA + NV++AF
Sbjct: 105 LTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAF 164
Query: 220 IDTAKEIYEKIQEGVFDITNEVDLVG 245
+ I++ + + ++VDL G
Sbjct: 165 RELIVAIFQMVSK------HQVDLSG 184
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+ + LIGNKSDL R V +E + FA E+ ++F ETSA + NV++AF + I++ +
Sbjct: 116 VAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMV 175
Query: 61 QEGVFDIT 68
+ D++
Sbjct: 176 SKHQVDLS 183
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 124 bits (312), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 87/132 (65%), Gaps = 6/132 (4%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F + I++DG + KL IWDTAGQE FR++T SYYRGA G +LVYD+TRR+TF L W
Sbjct: 50 VDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNW 109
Query: 160 LEDARQHSNSNMVI-MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
L + + N ++ L+GNK D + REV + EG FAR+H +F+E SAK V+ A
Sbjct: 110 LNELETYCTRNDIVNXLVGNKIDKE-NREVDRNEGLKFARKHSXLFIEASAKTCDGVQCA 168
Query: 219 FIDTAKEIYEKI 230
F +E+ EKI
Sbjct: 169 F----EELVEKI 176
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+V L+GNK D + REV + EG FAR+H +F+E SAK V+ AF +E+ EKI
Sbjct: 122 IVNXLVGNKIDKE-NREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAF----EELVEKI 176
Query: 61 --QEGVFDITNEANGIKIG 77
G+++ N+ +G G
Sbjct: 177 IQTPGLWESENQNSGPSSG 195
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 124 bits (312), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 85/125 (68%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
F ++ + ++ +K +IWDTAGQE + S+ YYRGAA A++V+D+T + +F W++
Sbjct: 49 FFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQ 108
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
+ + N NMV+ L GNKSDL R+V E+ + +A+E+GL FMETSAK ATNV+E F +
Sbjct: 109 ELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYE 168
Query: 222 TAKEI 226
A+ +
Sbjct: 169 IARRL 173
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
MV+ L GNKSDL R+V E+ + +A+E+GL FMETSAK ATNV+E F + A+ +
Sbjct: 118 MVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 92/132 (69%), Gaps = 1/132 (0%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F + + + GK+I+LQIWDTAGQE F SIT +YYR A G +LVYDIT++ETF+ L W
Sbjct: 61 VDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKW 120
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEA 218
++ ++++ + ++L+GNK D + RE+ +++GE FA++ G+ F E SAK NV+E
Sbjct: 121 MKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 180
Query: 219 FIDTAKEIYEKI 230
F+ +I +K+
Sbjct: 181 FLKLVDDILKKM 192
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
++L+GNK D + RE+ +++GE FA++ G+ F E SAK NV+E F+ +I +K+
Sbjct: 134 LLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 86/125 (68%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
F + + +D +K +IWDTAGQE + S+ YYRGA A++VYDIT +ETF TW++
Sbjct: 45 FLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVK 104
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
+ ++ ++ ++VI L GNK+DL +R V+ EE + +A ++ L+FMETSAK A NV + F+
Sbjct: 105 ELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLA 164
Query: 222 TAKEI 226
AK++
Sbjct: 165 IAKKL 169
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 40/56 (71%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+VI L GNK+DL +R V+ EE + +A ++ L+FMETSAK A NV + F+ AK++
Sbjct: 114 IVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 85/125 (68%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
F + + +D +K +IWDTAGQE + S+ YYRGA A++VYDIT +TF W++
Sbjct: 42 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVK 101
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
+ ++ ++ N+VI L GNK+DL ++R V+ +E + +A ++ L+FMETSAK A NV E F+
Sbjct: 102 ELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMA 161
Query: 222 TAKEI 226
AK++
Sbjct: 162 IAKKL 166
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 41/56 (73%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+VI L GNK+DL ++R V+ +E + +A ++ L+FMETSAK A NV E F+ AK++
Sbjct: 111 IVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 85/125 (68%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
F + + +D +K +IWDTAGQE + S+ YYRGA A++VYDIT +TF W++
Sbjct: 40 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVK 99
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
+ ++ ++ N+VI L GNK+DL ++R V+ +E + +A ++ L+FMETSAK A NV E F+
Sbjct: 100 ELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMA 159
Query: 222 TAKEI 226
AK++
Sbjct: 160 IAKKL 164
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 41/56 (73%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+VI L GNK+DL ++R V+ +E + +A ++ L+FMETSAK A NV E F+ AK++
Sbjct: 109 IVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 85/120 (70%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
++F ++ + ++ + I+LQ+WDTAGQE FRS+ SY R +A A++VYDIT +F T W
Sbjct: 41 IDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKW 100
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
++D R S+++IML+GNK+DL +R+V EEGE A+E ++F+ETSAK NV++ F
Sbjct: 101 IDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 37/49 (75%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
++IML+GNK+DL +R+V EEGE A+E ++F+ETSAK NV++ F
Sbjct: 112 VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 84/125 (67%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
F + + +D +K +IWDTAG E + S+ YYRGA A++VYDIT +TF W++
Sbjct: 42 FLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVK 101
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
+ ++ ++ N+VI L GNK+DL ++R V+ +E + +A ++ L+FMETSAK A NV E F+
Sbjct: 102 ELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMA 161
Query: 222 TAKEI 226
AK++
Sbjct: 162 IAKKL 166
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 41/56 (73%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+VI L GNK+DL ++R V+ +E + +A ++ L+FMETSAK A NV E F+ AK++
Sbjct: 111 IVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 84/120 (70%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
++F ++ + ++ + I+LQ+WDTAG E FRS+ SY R +A A++VYDIT +F T W
Sbjct: 48 IDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKW 107
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
++D R S+++IML+GNK+DL +R+V EEGE A+E ++F+ETSAK NV++ F
Sbjct: 108 IDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 167
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 37/49 (75%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
++IML+GNK+DL +R+V EEGE A+E ++F+ETSAK NV++ F
Sbjct: 119 VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 167
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 83/125 (66%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
F + + +D +K +IWDTAGQE + S+ YYRGA A++VYDIT E+F W++
Sbjct: 44 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVK 103
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
+ ++ ++ N+VI L GNK+DL +R V +E + +A ++ L+FMETSAK + NV E F+
Sbjct: 104 ELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 163
Query: 222 TAKEI 226
AK++
Sbjct: 164 IAKKL 168
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+VI L GNK+DL +R V +E + +A ++ L+FMETSAK + NV E F+ AK++
Sbjct: 113 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 85/120 (70%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
++F ++ + ++ + ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F+ + W
Sbjct: 49 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKW 108
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
++D R S+++IML+GNK+DL +R+V EEGE A+E ++F+ETSAK NV++ F
Sbjct: 109 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 37/49 (75%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
++IML+GNK+DL +R+V EEGE A+E ++F+ETSAK NV++ F
Sbjct: 120 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 83/125 (66%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
F + + +D +K +IWDTAGQE + S+ YYRGA A++VYDIT E+F W++
Sbjct: 43 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVK 102
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
+ ++ ++ N+VI L GNK+DL +R V +E + +A ++ L+FMETSAK + NV E F+
Sbjct: 103 ELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162
Query: 222 TAKEI 226
AK++
Sbjct: 163 IAKKL 167
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+VI L GNK+DL +R V +E + +A ++ L+FMETSAK + NV E F+ AK++
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 83/125 (66%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
F + + +D +K +IWDTAGQE + S+ YYRGA A++VYDIT E+F W++
Sbjct: 43 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVK 102
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
+ ++ ++ N+VI L GNK+DL +R V +E + +A ++ L+FMETSAK + NV E F+
Sbjct: 103 ELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162
Query: 222 TAKEI 226
AK++
Sbjct: 163 IAKKL 167
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+VI L GNK+DL +R V +E + +A ++ L+FMETSAK + NV E F+ AK++
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 83/125 (66%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
F + + +D +K +IWDTAGQE + S+ YYRGA A++VYDIT E+F W++
Sbjct: 43 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVK 102
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
+ ++ ++ N+VI L GNK+DL +R V +E + +A ++ L+FMETSAK + NV E F+
Sbjct: 103 ELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162
Query: 222 TAKEI 226
AK++
Sbjct: 163 IAKKL 167
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+VI L GNK+DL +R V +E + +A ++ L+FMETSAK + NV E F+ AK++
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 83/125 (66%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
F + + +D +K +IWDTAGQE + S+ YYRGA A++VYDIT E+F W++
Sbjct: 43 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVK 102
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
+ ++ ++ N+VI L GNK+DL +R V +E + +A ++ L+FMETSAK + NV E F+
Sbjct: 103 ELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162
Query: 222 TAKEI 226
AK++
Sbjct: 163 IAKKL 167
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+VI L GNK+DL +R V +E + +A ++ L+FMETSAK + NV E F+ AK++
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 83/125 (66%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
F + + +D +K +IWDTAGQE + S+ YYRGA A++VYDIT E+F W++
Sbjct: 43 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVK 102
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
+ ++ ++ N+VI L GNK+DL +R V +E + +A ++ L+FMETSAK + NV E F+
Sbjct: 103 ELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162
Query: 222 TAKEI 226
AK++
Sbjct: 163 IAKKL 167
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+VI L GNK+DL +R V +E + +A ++ L+FMETSAK + NV E F+ AK++
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 83/125 (66%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
F + + +D +K +IWDTAGQE + S+ YYRGA A++VYDIT E+F W++
Sbjct: 43 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVK 102
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
+ ++ ++ N+VI L GNK+DL +R V +E + +A ++ L+FMETSAK + NV E F+
Sbjct: 103 ELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162
Query: 222 TAKEI 226
AK++
Sbjct: 163 IAKKL 167
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+VI L GNK+DL +R V +E + +A ++ L+FMETSAK + NV E F+ AK++
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 117 bits (292), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 84/120 (70%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
++F ++ + ++ + ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F T W
Sbjct: 36 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKW 95
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
++D R S+++IML+GNK+DL +R+V EEGE A+E ++F+ETSAK NV++ F
Sbjct: 96 IDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 155
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 37/49 (75%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
++IML+GNK+DL +R+V EEGE A+E ++F+ETSAK NV++ F
Sbjct: 107 VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 155
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 116 bits (291), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 87/129 (67%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
++F ++ + ++ + ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F + W
Sbjct: 37 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKW 96
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
++D R S+++IML+GNK+DL +R++ EEGE A+E ++F+ETSAK NV++ F
Sbjct: 97 IDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLF 156
Query: 220 IDTAKEIYE 228
A + E
Sbjct: 157 RRVASALLE 165
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
++IML+GNK+DL +R++ EEGE A+E ++F+ETSAK NV++ F A + E
Sbjct: 108 VIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 82/125 (65%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
F + + +D +K +IWDTAG E + S+ YYRGA A++VYDIT E+F W++
Sbjct: 42 FLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVK 101
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
+ ++ ++ N+VI L GNK+DL +R V +E + +A ++ L+FMETSAK + NV E F+
Sbjct: 102 ELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 161
Query: 222 TAKEI 226
AK++
Sbjct: 162 IAKKL 166
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+VI L GNK+DL +R V +E + +A ++ L+FMETSAK + NV E F+ AK++
Sbjct: 111 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 81/125 (64%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
F + + +D +K +IWDTAGQE + S+ YYRGA A++VYDIT E+F W++
Sbjct: 44 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVK 103
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
+ ++ ++ N+VI L GNK+DL +R V +E + +A ++ L+F ETSAK + NV E F
Sbjct: 104 ELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXA 163
Query: 222 TAKEI 226
AK++
Sbjct: 164 IAKKL 168
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+VI L GNK+DL +R V +E + +A ++ L+F ETSAK + NV E F AK++
Sbjct: 113 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 83/120 (69%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
++F ++ + ++ + ++LQ+WDTAG E FRS+ SY R + A++VYDIT +F T W
Sbjct: 41 IDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKW 100
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
++D R S+++IML+GNK+DL +R+V EEGE A+E ++F+ETSAK NV++ F
Sbjct: 101 IDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 37/49 (75%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
++IML+GNK+DL +R+V EEGE A+E ++F+ETSAK NV++ F
Sbjct: 112 VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 83/120 (69%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
++F ++ + ++ + ++LQ+WDTAG E FRS+ SY R + A++VYDIT +F T W
Sbjct: 51 IDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKW 110
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
++D R S+++IML+GNK+DL +R+V EEGE A+E ++F+ETSAK NV++ F
Sbjct: 111 IDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 170
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 37/49 (75%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
++IML+GNK+DL +R+V EEGE A+E ++F+ETSAK NV++ F
Sbjct: 122 VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 170
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 82/120 (68%), Gaps = 1/120 (0%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F R + I+G+++KLQIWDTAGQE FR+IT +YYRG G ++VYD+T E+F ++ W
Sbjct: 44 VDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRW 103
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
L + Q+ + ++ +L+GNK+D R+ V+ E+ FA + G+ ETSAK NVEE F
Sbjct: 104 LHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 4 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
+L+GNK+D R+ V+ E+ FA + G+ ETSAK NVEE F
Sbjct: 117 ILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 83/134 (61%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
++F + + K++KLQIWDTAGQE +R+IT +YYRGA G +L+YDIT E+FN + W
Sbjct: 58 IDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW 117
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
+ +S N ++L+GNK D++ R V E+G++ A + G F E SAK +V +AF
Sbjct: 118 ATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177
Query: 220 IDTAKEIYEKIQEG 233
I +K+ +
Sbjct: 178 ERLVDAICDKMSDS 191
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 62
++L+GNK D++ R V E+G++ A + G F E SAK +V +AF I +K+ +
Sbjct: 131 VILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190
Query: 63 G 63
Sbjct: 191 S 191
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 75/112 (66%)
Query: 115 KLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIM 174
K IWDTAGQE FR++ YYRG+A A++VYDIT+ ETF+ L W+ + RQH ++V+
Sbjct: 55 KFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA 114
Query: 175 LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
+ GNK DL REV + + + +A +F+ETSAK A N+ E FI+ ++ I
Sbjct: 115 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+V+ + GNK DL REV + + + +A +F+ETSAK A N+ E FI+ ++ I
Sbjct: 111 IVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 83/127 (65%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
++F ++ + +D ++LQ+WDTAGQE FRS+ SY R +A A++VYDIT R++F + T W
Sbjct: 36 IDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKW 95
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
++D +++I L+GNK+DL R+V EEG A+E+ F ETSAK N++ F
Sbjct: 96 IQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155
Query: 220 IDTAKEI 226
TA ++
Sbjct: 156 KKTASKL 162
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++I L+GNK+DL R+V EEG A+E+ F ETSAK N++ F TA ++
Sbjct: 107 VIIALVGNKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 78/130 (60%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
++F + I + K+IKLQIWDTAGQE +R+IT +YYRGA G +L+YDIT E+FN + W
Sbjct: 40 IDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW 99
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
+ +S N ++L+GNK D++ R V E G A G F E SAK NV++ F
Sbjct: 100 STQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 159
Query: 220 IDTAKEIYEK 229
I EK
Sbjct: 160 ERLVDVICEK 169
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
++L+GNK D++ R V E G A G F E SAK NV++ F I EK
Sbjct: 113 VLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 80/133 (60%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
++F + + K+IKLQIWDTAGQE +R+IT +YYRGA G LL+YDI +E+F + W
Sbjct: 57 IDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDW 116
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
+ +S N ++L+GNK DL+ R V E+G A + G F E SAK NV++ F
Sbjct: 117 ATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176
Query: 220 IDTAKEIYEKIQE 232
I EK+ E
Sbjct: 177 ERLVDVICEKMNE 189
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 62
++L+GNK DL+ R V E+G A + G F E SAK NV++ F I EK+ E
Sbjct: 130 VILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 74/112 (66%)
Query: 115 KLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIM 174
K IWDTAG E FR++ YYRG+A A++VYDIT+ ETF+ L W+ + RQH ++V+
Sbjct: 56 KFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA 115
Query: 175 LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
+ GNK DL REV + + + +A +F+ETSAK A N+ E FI+ ++ I
Sbjct: 116 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+V+ + GNK DL REV + + + +A +F+ETSAK A N+ E FI+ ++ I
Sbjct: 112 IVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 77/135 (57%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
++F + I + K+IKLQIWDTAG E +R+IT +YYRGA G +L YDIT E+FN + W
Sbjct: 43 IDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDW 102
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
+ +S N ++L+GNK D + R V E G A G F E SAK NV++ F
Sbjct: 103 STQIKTYSWDNAQVLLVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162
Query: 220 IDTAKEIYEKIQEGV 234
I EK E +
Sbjct: 163 ERLVDVICEKXSESL 177
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 35/77 (45%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 62
++L+GNK D + R V E G A G F E SAK NV++ F I EK E
Sbjct: 116 VLLVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSE 175
Query: 63 GVFDITNEANGIKIGPQ 79
+ G K GPQ
Sbjct: 176 SLDTADPAVTGAKQGPQ 192
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 80/128 (62%), Gaps = 3/128 (2%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
F + +TI+ +K +IWDTAGQE F S+ YYR A AL+VYD+T+ ++F W++
Sbjct: 40 FLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVK 99
Query: 162 DARQHSNSNMVIMLIGNKSDL---DARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
+ + ++ +++I L+GNK D R+V +EEGE A E GL+F ETSAK NV +
Sbjct: 100 ELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV 159
Query: 219 FIDTAKEI 226
F+ ++I
Sbjct: 160 FLGIGEKI 167
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 1 MVIMLIGNKSDL---DARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++I L+GNK D R+V +EEGE A E GL+F ETSAK NV + F+ ++I
Sbjct: 109 IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 79/125 (63%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
F + + + K IWDTAGQE F S+ YYRG+A A++VYDIT++++F L W++
Sbjct: 60 FMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVK 119
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
+ ++H N+V+ + GNK DL REV ++ + +A G + +ETSAK A N+EE F
Sbjct: 120 ELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQG 179
Query: 222 TAKEI 226
+++I
Sbjct: 180 ISRQI 184
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+V+ + GNK DL REV ++ + +A G + +ETSAK A N+EE F +++I
Sbjct: 129 IVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 87/136 (63%), Gaps = 6/136 (4%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F + + +DG++ LQ+WDTAGQE FRSI +SY+R A G LL+YD+T ++F ++ W
Sbjct: 63 VDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREW 122
Query: 160 LEDARQHSNSNMVIMLIGNKSDL------DARREVKKEEGEVFAREHGLVFMETSAKLAT 213
++ ++ + IML+GNK+D+ + ++ V GE A +G +F ETSAK +
Sbjct: 123 VDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS 182
Query: 214 NVEEAFIDTAKEIYEK 229
N+ EA + A+E+ ++
Sbjct: 183 NIVEAVLHLAREVKKR 198
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Query: 3 IMLIGNKSDL------DARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
IML+GNK+D+ + ++ V GE A +G +F ETSAK +N+ EA + A+E+
Sbjct: 136 IMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195
Query: 57 YEK 59
++
Sbjct: 196 KKR 198
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 65/83 (78%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ W
Sbjct: 33 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 92
Query: 160 LEDARQHSNSNMVIMLIGNKSDL 182
L++ ++++ N+ +L+GNK DL
Sbjct: 93 LQEIDRYASENVNKLLVGNKCDL 115
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 75/127 (59%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
F + + I GK++ L IWDTAGQE F ++ YYR + GA+LVYDIT ++F + W++
Sbjct: 57 FLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVK 116
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
+ R+ + + + ++GNK DL+ R V +E E +A G TSAK +EE F+D
Sbjct: 117 ELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 176
Query: 222 TAKEIYE 228
K + E
Sbjct: 177 LCKRMIE 183
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
+ + ++GNK DL+ R V +E E +A G TSAK +EE F+D K + E
Sbjct: 126 ICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 183
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 75/127 (59%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
F + + I GK++ L IWDTAGQE F ++ YYR + GA+LVYDIT ++F + W++
Sbjct: 43 FLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVK 102
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
+ R+ + + + ++GNK DL+ R V +E E +A G TSAK +EE F+D
Sbjct: 103 ELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162
Query: 222 TAKEIYE 228
K + E
Sbjct: 163 LCKRMIE 169
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
+ + ++GNK DL+ R V +E E +A G TSAK +EE F+D K + E
Sbjct: 112 ICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 75/127 (59%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
F + + I GK++ L IWDTAGQE F ++ YYR + GA+LVYDIT ++F + W++
Sbjct: 43 FLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVK 102
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
+ R+ + + + ++GNK DL+ R V +E E +A G TSAK +EE F+D
Sbjct: 103 ELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162
Query: 222 TAKEIYE 228
K + E
Sbjct: 163 LCKRMIE 169
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
+ + ++GNK DL+ R V +E E +A G TSAK +EE F+D K + E
Sbjct: 112 ICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 80/132 (60%), Gaps = 5/132 (3%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFR-SITRSYYRGAAGALLVYDITRRETFNHLTT 158
V+F R + IDG++IK+Q+WDTAGQE FR S+ + YYR + VYD+T +F+ L
Sbjct: 55 VDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPA 114
Query: 159 WLEDARQHSNSNMVI-MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATN--- 214
W+E+ +QH +N + +L+GNK DL + +V + + FA H + ETSAK +
Sbjct: 115 WIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH 174
Query: 215 VEEAFIDTAKEI 226
VE F+ A ++
Sbjct: 175 VEAIFMTLAHKL 186
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 4 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATN---VEEAFIDTAKEI 56
+L+GNK DL + +V + + FA H + ETSAK + VE F+ A ++
Sbjct: 131 ILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Query: 111 GKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS- 169
G++I LQ+WDTAG E FRS+T +++R A G LL++D+T ++F ++ W+ + H+ S
Sbjct: 67 GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE 126
Query: 170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
N I+L GNKSDL+ +R VK+EE A ++G+ + ETSA TN+ A
Sbjct: 127 NPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHA 175
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 48
I+L GNKSDL+ +R VK+EE A ++G+ + ETSA TN+ A
Sbjct: 130 IVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHA 175
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFR-SITRSYYRGAAGALLVYDITRRETFNHLTT 158
V+F R + IDG++IK+Q+WDTAGQE FR S+ + YYR + VYD T +F+ L
Sbjct: 64 VDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPA 123
Query: 159 WLEDARQHSNSNMVI-MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK 210
W+E+ +QH +N + +L+GNK DL + +V + + FA H ETSAK
Sbjct: 124 WIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAK 176
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 4 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK 40
+L+GNK DL + +V + + FA H ETSAK
Sbjct: 140 ILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAK 176
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS-NM 171
++ LQ+WDTAGQE FRS+T +++R A G LL++D+T +++F ++ W+ + ++ N
Sbjct: 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 142
Query: 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 231
I+LIGNK+DL +REV + + A ++G+ + ETSA NVE+A ++T ++ K
Sbjct: 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKA-VETLLDLIMKRM 201
Query: 232 EGVFDITNEVDLV 244
E + T D V
Sbjct: 202 EQCVEKTQIPDTV 214
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 48
I+LIGNK+DL +REV + + A ++G+ + ETSA NVE+A
Sbjct: 144 IVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKA 189
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
IK IWDTAGQE + SI YYRGA A++V+DI+ T + TW+ + +SN +
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYI 149
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 230
I+L+ NK D + + +V E + +A+++ L+F++TSAK TN++ F A+EIY+ I
Sbjct: 150 IILVANKIDKN-KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 2 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+I+L+ NK D + + +V E + +A+++ L+F++TSAK TN++ F A+EIY+ I
Sbjct: 149 IIILVANKIDKN-KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 83/133 (62%), Gaps = 2/133 (1%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS-NM 171
++ LQ+WDTAG E FRS+T +++R A G LL++D+T +++F ++ W+ + ++ N
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 231
I+LIGNK+DL +REV + + A ++G+ + ETSA NVE++ ++T ++ K
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS-VETLLDLIMKRM 187
Query: 232 EGVFDITNEVDLV 244
E + T D V
Sbjct: 188 EKCVEKTQVPDTV 200
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE---EAFIDTAKEIYEK 59
I+LIGNK+DL +REV + + A ++G+ + ETSA NVE E +D + EK
Sbjct: 130 IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 189
Query: 60 IQEG--VFDITNEANGIKI 76
E V D N N K+
Sbjct: 190 CVEKTQVPDTVNGGNSGKL 208
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 79/147 (53%), Gaps = 13/147 (8%)
Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW- 159
+F + + +D + + +QIWDTAGQE F+S+ ++YRGA +LV+D+T TF L +W
Sbjct: 44 DFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR 103
Query: 160 ---LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
L A N +++GNK DL+ R+ K ++ + + ETSAK A NVE
Sbjct: 104 DEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163
Query: 217 EAFIDTAK---------EIYEKIQEGV 234
+AF A+ E+Y + E +
Sbjct: 164 QAFQTIARNALKQETEVELYNEFPEPI 190
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAK-------- 54
+++GNK DL+ R+ K ++ + + ETSAK A NVE+AF A+
Sbjct: 120 FVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 179
Query: 55 -EIYEKIQEGV 64
E+Y + E +
Sbjct: 180 VELYNEFPEPI 190
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 83/133 (62%), Gaps = 2/133 (1%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS-NM 171
++ LQ+WDTAG E FRS+T +++R A G LL++D+T +++F ++ W+ + ++ N
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 231
I+LIGNK+DL +REV + + A ++G+ + ETSA NVE++ ++T ++ K
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS-VETLLDLIMKRM 187
Query: 232 EGVFDITNEVDLV 244
E + T D V
Sbjct: 188 EKCVEKTQVPDTV 200
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 48
I+LIGNK+DL +REV + + A ++G+ + ETSA NVE++
Sbjct: 130 IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 4/128 (3%)
Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW- 159
+F + + +D + + +QIWDTAGQE F+S+ ++YRGA +LV+D+T TF L +W
Sbjct: 44 DFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR 103
Query: 160 ---LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
L A N +++GNK DL+ R+ K ++ + + ETSAK A NVE
Sbjct: 104 DEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163
Query: 217 EAFIDTAK 224
+AF A+
Sbjct: 164 QAFQTIAR 171
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAK 54
+++GNK DL+ R+ K ++ + + ETSAK A NVE+AF A+
Sbjct: 120 FVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 13/147 (8%)
Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW- 159
+F + + +D + + +QIWDTAGQE F+S+ ++YRGA +LV+D+T TF L +W
Sbjct: 44 DFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR 103
Query: 160 ---LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
L A N +++GNK D + R+ K ++ + + ETSAK A NVE
Sbjct: 104 DEFLIQASPRDPENFPFVVLGNKIDFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163
Query: 217 EAFIDTAK---------EIYEKIQEGV 234
+AF A+ E+Y + E +
Sbjct: 164 QAFQTIARNALKQETEVELYNEFPEPI 190
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAK-------- 54
+++GNK D + R+ K ++ + + ETSAK A NVE+AF A+
Sbjct: 120 FVVLGNKIDFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 179
Query: 55 -EIYEKIQEGV 64
E+Y + E +
Sbjct: 180 VELYNEFPEPI 190
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 80/132 (60%), Gaps = 6/132 (4%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEF + + +DG + +QIWDTAGQE FRS+ +YRG+ LL + + ++F +L+ W
Sbjct: 42 VEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNW 101
Query: 160 LEDARQHSN----SNMVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATN 214
++ +++ + +++GNK D+ + R+V EE + + R++G + ETSAK ATN
Sbjct: 102 KKEFIYYADVKEPESFPFVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATN 160
Query: 215 VEEAFIDTAKEI 226
V AF + + +
Sbjct: 161 VAAAFEEAVRRV 172
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEI 56
+++GNK D+ + R+V EE + + R++G + ETSAK ATNV AF + + +
Sbjct: 119 FVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 80/132 (60%), Gaps = 6/132 (4%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEF + + +DG + +QIWDTAGQE FRS+ +YRG+ LL + + ++F +L+ W
Sbjct: 44 VEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNW 103
Query: 160 LEDARQHSN----SNMVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATN 214
++ +++ + +++GNK D+ + R+V EE + + R++G + ETSAK ATN
Sbjct: 104 KKEFIYYADVKEPESFPFVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATN 162
Query: 215 VEEAFIDTAKEI 226
V AF + + +
Sbjct: 163 VAAAFEEAVRRV 174
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEI 56
+++GNK D+ + R+V EE + + R++G + ETSAK ATNV AF + + +
Sbjct: 121 FVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 81/133 (60%), Gaps = 2/133 (1%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS-NM 171
++ LQ+WDTAG E FRS+T +++R A G LL +D+T +++F ++ W + ++ N
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 231
I+LIGNK+DL +REV + + A ++G+ + ETSA NVE++ ++T ++ K
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS-VETLLDLIXKRX 187
Query: 232 EGVFDITNEVDLV 244
E + T D V
Sbjct: 188 EKCVEKTQVPDTV 200
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE---EAFIDTAKEIYEK 59
I+LIGNK+DL +REV + + A ++G+ + ETSA NVE E +D + EK
Sbjct: 130 IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXEK 189
Query: 60 IQE 62
E
Sbjct: 190 CVE 192
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS-NM 171
++ LQ+WDTAG E FRS+T +++R A G LL +D+T +++F ++ W + ++ N
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE---EAFIDTAKEIYE 228
I+LIGNK+DL +REV + + A ++G+ + ETSA NVE E +D + E
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXE 188
Query: 229 KIQE 232
K E
Sbjct: 189 KCVE 192
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE---EAFIDTAKEIYEK 59
I+LIGNK+DL +REV + + A ++G+ + ETSA NVE E +D + EK
Sbjct: 130 IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXEK 189
Query: 60 IQE 62
E
Sbjct: 190 CVE 192
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 80/132 (60%), Gaps = 6/132 (4%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEF + + +DG + +QIWDTAGQE FRS+ +YRG+ LL + + ++F +L+ W
Sbjct: 46 VEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNW 105
Query: 160 LEDARQHSN----SNMVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATN 214
++ +++ + +++GNK+D+ R+V EE + + +++G + ETSAK +TN
Sbjct: 106 KKEFIYYADVKEPESFPFVILGNKTDI-KERQVSTEEAQAWCKDNGDYPYFETSAKDSTN 164
Query: 215 VEEAFIDTAKEI 226
V AF + + I
Sbjct: 165 VAAAFEEAVRRI 176
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEI 56
+++GNK+D+ R+V EE + + +++G + ETSAK +TNV AF + + I
Sbjct: 123 FVILGNKTDI-KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDA 163
++ ++DG +L I DTAGQE F ++ Y R G LLV+ I R++FN + + +
Sbjct: 48 KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQIL 107
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
R + ++L+GNK+DL+++R+V + E F H + + E SAKL NV+EAF
Sbjct: 108 RVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
++L+GNK+DL+++R+V + E F H + + E SAKL NV+EAF
Sbjct: 117 VVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 80/132 (60%), Gaps = 6/132 (4%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
VEF R + +DG+ + LQIWDTAGQE F+S+ +YRGA LL + + R++F +L W
Sbjct: 42 VEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNW 101
Query: 160 LEDARQHSN----SNMVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATN 214
++ +++ + +++GNK D + R+V EE + + E+G ++ETSAK TN
Sbjct: 102 QKEFIYYADVKDPEHFPFVVLGNKVDKE-DRQVTTEEAQTWCMENGDYPYLETSAKDDTN 160
Query: 215 VEEAFIDTAKEI 226
V AF + +++
Sbjct: 161 VTVAFEEAVRQV 172
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEI 56
+++GNK D + R +V EE + + E+G ++ETSAK TNV AF + +++
Sbjct: 119 FVVLGNKVDKEDR-QVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 13/147 (8%)
Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW- 159
+F + + +D + + +QIWDTAG E F+S+ ++YRGA +LV+D+T TF L +W
Sbjct: 44 DFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR 103
Query: 160 ---LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
L A N +++GNK DL+ R+ K ++ + + ETSAK A NVE
Sbjct: 104 DEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163
Query: 217 EAFIDTAK---------EIYEKIQEGV 234
+AF A+ E+Y + E +
Sbjct: 164 QAFQTIARNALKQETEVELYNEFPEPI 190
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAK-------- 54
+++GNK DL+ R+ K ++ + + ETSAK A NVE+AF A+
Sbjct: 120 FVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 179
Query: 55 -EIYEKIQEGV 64
E+Y + E +
Sbjct: 180 VELYNEFPEPI 190
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
V+F R I ++ + ++L +WDTAGQE F +IT++YYRGA +LV+ T RE+F +++W
Sbjct: 40 VDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSW 99
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
E ++ L+ NK DL +K EE E A+ L F TS K NV E F
Sbjct: 100 REKVVAEVG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
+ + +DG+++++ I DTAGQE + +I +Y+R G L V+ IT E+F + E
Sbjct: 57 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 116
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
R + N+ +L+GNKSDL+ +R+V EE + A + + ++ETSAK NV++ F D
Sbjct: 117 RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 176
Query: 224 KEI 226
+EI
Sbjct: 177 REI 179
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+L+GNKSDL+ +R+V EE + A + + ++ETSAK NV++ F D +EI
Sbjct: 126 FLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
+ + +DG+++++ I DTAGQE + +I +Y+R G L V+ IT E+F + E
Sbjct: 45 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 104
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
R + N+ +L+GNKSDL+ +R+V EE + A + + ++ETSAK NV++ F D
Sbjct: 105 RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 164
Query: 224 KEI 226
+EI
Sbjct: 165 REI 167
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+L+GNKSDL+ +R+V EE + A + + ++ETSAK NV++ F D +EI
Sbjct: 114 FLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
+ + +DG+++++ I DTAGQE + +I +Y+R G L V+ IT E+F + E
Sbjct: 53 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 112
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
R + N+ +L+GNKSDL+ +R+V EE + A + + ++ETSAK NV++ F D
Sbjct: 113 RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 172
Query: 224 KEI 226
+EI
Sbjct: 173 REI 175
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+L+GNKSDL+ +R+V EE + A + + ++ETSAK NV++ F D +EI
Sbjct: 122 FLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
+ + +DG+++++ I DTAGQE + +I +Y+R G L V+ IT E+F + E
Sbjct: 43 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 102
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
R + N+ +L+GNKSDL+ +R+V EE + A + + ++ETSAK NV++ F D
Sbjct: 103 RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162
Query: 224 KEI 226
+EI
Sbjct: 163 REI 165
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+L+GNKSDL+ +R+V EE + A + + ++ETSAK NV++ F D +EI
Sbjct: 112 FLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 75/127 (59%), Gaps = 2/127 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + +DG+++++ I DTAG E + +I +Y+R G LLV+ IT E+F + E
Sbjct: 46 KKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQIL 105
Query: 165 --QHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDT 222
+ + ++++GNKSDL+ RR+V EE A E G+ ++ETSAK NV++ F D
Sbjct: 106 RVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDL 165
Query: 223 AKEIYEK 229
+EI K
Sbjct: 166 MREIRTK 172
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
+ ++++GNKSDL+ RR+V EE A E G+ ++ETSAK NV++ F D +EI K
Sbjct: 114 IPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 172
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 75/127 (59%), Gaps = 2/127 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + +DG+++++ I DTAG E + +I +Y+R G LLV+ IT E+F + E
Sbjct: 42 KKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQIL 101
Query: 165 --QHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDT 222
+ + ++++GNKSDL+ RR+V EE A E G+ ++ETSAK NV++ F D
Sbjct: 102 RVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDL 161
Query: 223 AKEIYEK 229
+EI K
Sbjct: 162 MREIRTK 168
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
+ ++++GNKSDL+ RR+V EE A E G+ ++ETSAK NV++ F D +EI K
Sbjct: 110 IPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 168
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
+ ID + +L I DTAGQE F ++ Y R G LLV+ +T R +F + +
Sbjct: 44 KQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQIL 103
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
R ++LIGNK+DLD +R+V +EEG+ AR+ + +ME SAK+ NV++AF +
Sbjct: 104 RVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV 163
Query: 224 KEIYEKIQE 232
+ I K QE
Sbjct: 164 RVI-RKFQE 171
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 62
++LIGNK+DLD +R+V +EEG+ AR+ + +ME SAK+ NV++AF + + I K QE
Sbjct: 113 MILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI-RKFQE 171
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 84/138 (60%), Gaps = 7/138 (5%)
Query: 101 EFGARMITIDGKQIK-LQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
+F + +T+DG ++ +Q+WDTAGQE F+S+ ++YRGA +LVYD+T +F ++ +W
Sbjct: 44 DFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSW 103
Query: 160 LEDARQHSNSN----MVIMLIGNKSDL-DARREVKKEEGEVFAREHG-LVFMETSAKLAT 213
++ H+N N +++GNK D ++++ V ++ + A+ G + TSAK A
Sbjct: 104 RDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163
Query: 214 NVEEAFIDTAKEIYEKIQ 231
NV+ AF + A+ ++ Q
Sbjct: 164 NVDTAFEEIARSALQQNQ 181
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
+ + +D +Q L+I DTAG E F ++ Y + G LVY IT + TFN L E
Sbjct: 42 KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL 101
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDT 222
R ++ ++L+GNK DL+ R V KE+G+ AR+ + F+E+SAK NV E F D
Sbjct: 102 RVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDL 161
Query: 223 AKEI 226
++I
Sbjct: 162 VRQI 165
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL+ R V KE+G+ AR+ + F+E+SAK NV E F D ++I
Sbjct: 111 MILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
+ + +D +Q L+I DTAG E F ++ Y + G LVY IT + TFN L E
Sbjct: 44 KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL 103
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDT 222
R ++ ++L+GNK DL+ R V KE+G+ AR+ + F+E+SAK NV E F D
Sbjct: 104 RVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDL 163
Query: 223 AKEI 226
++I
Sbjct: 164 VRQI 167
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL+ R V KE+G+ AR+ + F+E+SAK NV E F D ++I
Sbjct: 113 MILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
+ + +DG+++++ I DTAG E + +I +Y+R G L V+ IT E+F + E
Sbjct: 45 KKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 104
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
R + N+ +L+GNKSDL+ +R+V EE + A + + ++ETSAK NV++ F D
Sbjct: 105 RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 164
Query: 224 KEI 226
+EI
Sbjct: 165 REI 167
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+L+GNKSDL+ +R+V EE + A + + ++ETSAK NV++ F D +EI
Sbjct: 114 FLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
+ + +D +Q L+I DTAG E F ++ Y + G LVY IT + TFN L E
Sbjct: 42 KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL 101
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDT 222
R ++ ++L+GNK DL+ R V KE+G+ AR+ F+E+SAK NV E F D
Sbjct: 102 RVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161
Query: 223 AKEI 226
++I
Sbjct: 162 VRQI 165
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL+ R V KE+G+ AR+ F+E+SAK NV E F D ++I
Sbjct: 111 MILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
+ + +D +Q L+I DTAG E F ++ Y + G LVY IT + TFN L E
Sbjct: 42 KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL 101
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDT 222
R ++ ++L+GNK DL+ R V KE+G+ AR+ F+E+SAK NV E F D
Sbjct: 102 RVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161
Query: 223 AKEI 226
++I
Sbjct: 162 VRQI 165
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL+ R V KE+G+ AR+ F+E+SAK NV E F D ++I
Sbjct: 111 MILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNKSDL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKSDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNKSDL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKSDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNKSDL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKSDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNKSDL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKSDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 48 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 107
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 108 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 166
Query: 224 KEI 226
+EI
Sbjct: 167 REI 169
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 117 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 47 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 107 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 165
Query: 224 KEI 226
+EI
Sbjct: 166 REI 168
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 116 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 47 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 107 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 165
Query: 224 KEI 226
+EI
Sbjct: 166 REI 168
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 116 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 49 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 108
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 109 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 167
Query: 224 KEI 226
+EI
Sbjct: 168 REI 170
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 118 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 43 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S V M L+GNKSDL +R V ++ + AR +G+ F+ETSAK V++AF
Sbjct: 103 RVKDSEDVPMVLVGNKSDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
Query: 224 KEI 226
+EI
Sbjct: 162 REI 164
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNKSDL +R V ++ + AR +G+ F+ETSAK V++AF +EI
Sbjct: 112 MVLVGNKSDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 43 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S V M L+GNKSDL +R V ++ + AR +G+ F+ETSAK V++AF
Sbjct: 103 RVKDSEDVPMVLVGNKSDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
Query: 224 KEI 226
+EI
Sbjct: 162 REI 164
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNKSDL +R V ++ + AR +G+ F+ETSAK V++AF +EI
Sbjct: 112 MVLVGNKSDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 43 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S V M L+GNKSDL +R V ++ + AR +G+ F+ETSAK V++AF
Sbjct: 103 RVKDSEDVPMVLVGNKSDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
Query: 224 KEI 226
+EI
Sbjct: 162 REI 164
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNKSDL +R V ++ + AR +G+ F+ETSAK V++AF +EI
Sbjct: 112 MVLVGNKSDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Query: 100 VEFGARMITIDGK-QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
++F R IT+ G + LQIWD GQ + Y GA G LLVYDIT ++F +L
Sbjct: 41 LDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLED 100
Query: 159 W---LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNV 215
W ++ + S + ++ L+GNK DL+ R +K E+ F +E+G SAK +V
Sbjct: 101 WYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSV 160
Query: 216 EEAFIDTAKEI 226
F A EI
Sbjct: 161 FLCFQKVAAEI 171
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 2 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++ L+GNK DL+ R +K E+ F +E+G SAK +V F A EI
Sbjct: 117 LVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GN+ DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNRCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GN+ DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNRCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 43 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S V M L+GNK DL + R V ++ + AR +G+ F+ETSAK V++AF
Sbjct: 103 RVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
Query: 224 KEI 226
+EI
Sbjct: 162 REI 164
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL +R V ++ + AR +G+ F+ETSAK V++AF +EI
Sbjct: 112 MVLVGNKCDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DT GQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 2/122 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KE 225
+E
Sbjct: 161 RE 162
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 55
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +E
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DT GQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAG+E + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 60 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK 119
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL R V ++ A+ +G+ F+ETSAK VE+AF
Sbjct: 120 RVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLV 178
Query: 224 KEI 226
+EI
Sbjct: 179 REI 181
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL R V ++ A+ +G+ F+ETSAK VE+AF +EI
Sbjct: 129 MVLVGNKCDLPTR-TVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAG E + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAG E + ++ Y R G L V+ I ++F + + E +
Sbjct: 47 KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 107 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 165
Query: 224 KEI 226
+EI
Sbjct: 166 REI 168
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 116 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTA QE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKXDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKXDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTA QE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKXDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKXDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAG E + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAG E + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAG E + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAG E + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
IK +WDTAGQE F + YY A A++++D+T R T+ ++ W D + N+
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 116
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
I+L GNK D+ R+ K + VF R+ L + + SAK N E+ F+ A+++
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAG E + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V M L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
+EI
Sbjct: 161 REI 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL A R V+ + + AR +G+ ++ETSAK VE+AF +EI
Sbjct: 111 MVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
IK +WDTAGQE F + YY A A++++D+T R T+ ++ W D + N+
Sbjct: 51 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 109
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
I+L GNK D+ R+ K + VF R+ L + + SAK N E+ F+ A+++
Sbjct: 110 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
IK +WDTAGQE F + YY A A++++D+T R T+ ++ W D + N+
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 116
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
I+L GNK D+ R+ K + VF R+ L + + SAK N E+ F+ A+++
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
IK +WDTAGQE F + YY A A++++D+T R T+ ++ W D + N+
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 116
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
I+L GNK D+ R+ K + VF R+ L + + SAK N E+ F+ A+++
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAG E + ++ Y R G L V+ I ++F + + E +
Sbjct: 60 KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 119
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S V M L+GNK DL + R V ++ + AR +G+ F+ETSAK V++AF
Sbjct: 120 RVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 178
Query: 224 KEI 226
+EI
Sbjct: 179 REI 181
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL +R V ++ + AR +G+ F+ETSAK V++AF +EI
Sbjct: 129 MVLVGNKCDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
IK +WDTAGQE F + YY A A++++D+T R T+ ++ W D + N+
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 116
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
I+L GNK D+ R+ K + VF R+ L + + SAK N E+ F+ A+++
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
IK +WDTAGQE F + YY A A++++D+T R T+ ++ W D + N+
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 116
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
I+L GNK D+ R+ K + VF R+ L + + SAK N E+ F+ A+++
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
IK +WDTAGQE F + YY A A++++D+T R T+ ++ W D + N+
Sbjct: 58 PIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 116
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
I+L GNK D+ R+ K + VF R+ L + + SAK N E+ F+ A+++
Sbjct: 117 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
IK +WDTAGQE F + YY A A++++D+T R T+ ++ W D + N+
Sbjct: 63 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 121
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
I+L GNK D+ R+ K + VF R+ L + + SAK N E+ F+ A+++
Sbjct: 122 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
IK +WDTAGQE F + YY A A++++D+T R T+ ++ W D + N+
Sbjct: 63 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 121
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
I+L GNK D+ R+ K + VF R+ L + + SAK N E+ F+ A+++
Sbjct: 122 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
++I+ D LQI DT G F ++ R +LVY IT R++ L E
Sbjct: 42 QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQIC 101
Query: 165 QHSNS--NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
+ ++ IML+GNK D REV+ E E AR FMETSAKL NV+E F
Sbjct: 102 EIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELF 158
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
+ IML+GNK D REV+ E E AR FMETSAKL NV+E F
Sbjct: 110 IPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELF 158
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
IK +WDTAGQE F + YY A A++ +D+T R T+ ++ W D + N+
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVC-ENIP 116
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
I+L GNK D+ R+ K + VF R+ L + + SAK N E+ F+ A+++
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
IK +WDTAGQE + + YY A A++++D+T R T+ ++ W D + N+
Sbjct: 58 PIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 116
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
I+L GNK D+ R+ K + VF R+ L + + SAK N E+ F+ A+++
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
IK +WDTAG E F + YY A A++++D+T R T+ ++ W D + N+
Sbjct: 54 PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 112
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
I+L GNK D+ R+ K + VF R+ L + + SAK N E+ F+ A+++
Sbjct: 113 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
IK +WDTAG E F + YY A A++++D+T R T+ ++ W D + N+
Sbjct: 60 PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 118
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
I+L GNK D+ R+ K + VF R+ L + + SAK N E+ F+ A+++
Sbjct: 119 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
IK +WDTAG E F + YY A A++++D+T R T+ ++ W D + N+
Sbjct: 58 PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 116
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
I+L GNK D+ R+ K + VF R+ L + + SAK N E+ F+ A+++
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 9/124 (7%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITR-SYYRGAAGALLVYDITRRETFNH---LTTWLEDA 163
TID + + ++I DTAGQE +I R + R G +LVYDIT R +F L L++
Sbjct: 70 TIDDEVVSMEILDTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI 127
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT-NVEEAFIDT 222
++ N+ ++L+GNK+DLD R+V EEGE A E F E SA N+ E F +
Sbjct: 128 KK--PKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL 185
Query: 223 AKEI 226
+E+
Sbjct: 186 CREV 189
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT-NVEEAFIDTAKEI 56
+ ++L+GNK+DLD R+V EEGE A E F E SA N+ E F + +E+
Sbjct: 133 VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA 163
++++T+ + L + DTAGQ+ + + S+ G G +LVY +T +F + + +
Sbjct: 62 SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKL 121
Query: 164 RQ-HSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDT 222
+ H + + ++L+GNK+DL REV+ EG+ A G FME+SA+ + F
Sbjct: 122 HEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKV 181
Query: 223 AKEI 226
+EI
Sbjct: 182 IQEI 185
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK+DL REV+ EG+ A G FME+SA+ + F +EI
Sbjct: 132 VVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
+IK +WDTAG E F + YY A A++++D+T R T+ ++ W D + N+
Sbjct: 52 EIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIP 110
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
I+L GNK D+ R+ K + F R+ L + + SAK N E+ F+ A+++
Sbjct: 111 IVLCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 162
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
+IK +WDTAG E F + YY A A++++D+T R T+ ++ W D + N+
Sbjct: 53 EIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIP 111
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
I+L GNK D+ R+ K + F R+ L + + SAK N E+ F+ A+++
Sbjct: 112 IVLCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 163
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
+IK +WDTAG E F + YY A A++++D+T R T+ ++ W D + N+
Sbjct: 60 EIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIP 118
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
I+L GNK D+ R+ K + F R+ L + + SAK N E+ F+ A+++
Sbjct: 119 IVLCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%)
Query: 111 GKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN 170
G IK +WDTAGQE + YY GA+GA+L +D+T R T +L W+++ + +
Sbjct: 58 GNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE 117
Query: 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAK 224
I++ NK D+ R+++ K+ + + E SAK A N F+ A+
Sbjct: 118 APIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLAR 171
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWL 160
+F + I +D L+I DTAG E F S+ Y + G +LVY + +++F +
Sbjct: 38 DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMR 97
Query: 161 EDA-RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
+ R + ++L+GNK DL++ REV EG A E G FMETSAK T V+E F
Sbjct: 98 DQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF 157
Query: 220 IDTAKEI 226
+ +++
Sbjct: 158 AEIVRQM 164
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL++ REV EG A E G FMETSAK T V+E F + +++
Sbjct: 111 VILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH 166
I +DGKQ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 44 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 103
Query: 167 SNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLAT 213
N+ I+L+GNK DL RRE VK EEG A G +ME SAK
Sbjct: 104 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 163
Query: 214 NVEEAF 219
V E F
Sbjct: 164 GVREVF 169
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 3 IMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+L+GNK DL RRE VK EEG A G +ME SAK V E F
Sbjct: 110 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
I +DGKQ++L +WDTAGQE + + Y L+ + I ++ ++ W + +
Sbjct: 44 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 102
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
H N+ I+L+GNK DL RRE VK EEG A G +ME SAK
Sbjct: 103 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 162
Query: 213 TNVEEAF 219
V E F
Sbjct: 163 DGVREVF 169
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 3 IMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+L+GNK DL RRE VK EEG A G +ME SAK V E F
Sbjct: 110 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
I +DGKQ++L +WDTAGQE + + Y L+ + I ++ ++ W + +
Sbjct: 46 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 104
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
H N+ I+L+GNK DL RRE VK EEG A G +ME SAK
Sbjct: 105 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
Query: 213 TNVEEAF 219
V E F
Sbjct: 165 DGVREVF 171
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 3 IMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+L+GNK DL RRE VK EEG A G +ME SAK V E F
Sbjct: 112 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
I +DGKQ++L +WDTAGQE + + Y L+ + I ++ ++ W + +
Sbjct: 47 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 105
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
H N+ I+L+GNK DL RRE VK EEG A G +ME SAK
Sbjct: 106 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 165
Query: 213 TNVEEAF 219
V E F
Sbjct: 166 DGVREVF 172
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 3 IMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+L+GNK DL RRE VK EEG A G +ME SAK V E F
Sbjct: 113 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH 166
I +DGKQ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 47 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 106
Query: 167 SNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLAT 213
N+ I+L+GNK DL RRE VK EEG A G +ME SAK
Sbjct: 107 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 166
Query: 214 NVEEAF 219
V E F
Sbjct: 167 GVREVF 172
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 3 IMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+L+GNK DL RRE VK EEG A G +ME SAK V E F
Sbjct: 113 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH 166
I +DGKQ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 50 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 109
Query: 167 SNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLAT 213
N+ I+L+GNK DL RRE VK EEG A G +ME SAK
Sbjct: 110 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 169
Query: 214 NVEEAF 219
V E F
Sbjct: 170 GVREVF 175
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 3 IMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+L+GNK DL RRE VK EEG A G +ME SAK V E F
Sbjct: 116 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
I +DGKQ++L +WDTAGQE + + Y L+ + I ++ ++ W + +
Sbjct: 48 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 106
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
H N+ I+L+GNK DL RRE VK EEG A G +ME SAK
Sbjct: 107 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166
Query: 213 TNVEEAF 219
V E F
Sbjct: 167 DGVREVF 173
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 3 IMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+L+GNK DL RRE VK EEG A G +ME SAK V E F
Sbjct: 114 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
I +DGKQ++L +WDTAGQE + + Y L+ + I ++ ++ W + +
Sbjct: 46 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 104
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
H N+ I+L+GNK DL RRE VK EEG A G +ME SAK
Sbjct: 105 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
Query: 213 TNVEEAF 219
V E F
Sbjct: 165 DGVREVF 171
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 3 IMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+L+GNK DL RRE VK EEG A G +ME SAK V E F
Sbjct: 112 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
I +DGKQ++L +WDTAGQE + + Y L+ + I ++ ++ W + +
Sbjct: 46 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 104
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
H N+ I+L+GNK DL RRE VK EEG A G +ME SAK
Sbjct: 105 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
Query: 213 TNVEEAF 219
V E F
Sbjct: 165 DGVREVF 171
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 3 IMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+L+GNK DL RRE VK EEG A G +ME SAK V E F
Sbjct: 112 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH 166
I +DGKQ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 49 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 108
Query: 167 SNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLAT 213
N+ I+L+GNK DL RRE VK EEG A G +ME SAK
Sbjct: 109 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 168
Query: 214 NVEEAF 219
V E F
Sbjct: 169 GVREVF 174
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 3 IMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+L+GNK DL RRE VK EEG A G +ME SAK V E F
Sbjct: 115 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
I +DGKQ++L +WDTAGQE + + Y L+ + I ++ ++ W + +
Sbjct: 46 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 104
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
H N+ I+L+GNK DL RRE VK EEG A G +ME SAK
Sbjct: 105 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
Query: 213 TNVEEAF 219
V E F
Sbjct: 165 DGVREVF 171
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 3 IMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+L+GNK DL RRE VK EEG A G +ME SAK V E F
Sbjct: 112 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
I +DGKQ++L +WDTAGQE + + Y L+ + I ++ ++ W + +
Sbjct: 48 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 106
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
H N+ I+L+GNK DL RRE VK EEG A G +ME SAK
Sbjct: 107 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166
Query: 213 TNVEEAF 219
V E F
Sbjct: 167 DGVREVF 173
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 3 IMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+L+GNK DL RRE VK EEG A G +ME SAK V E F
Sbjct: 114 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
I +DGKQ++L +WDTAGQE + + Y L+ + I ++ ++ W + +
Sbjct: 48 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 106
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
H N+ I+L+GNK DL RRE VK EEG A G +ME SAK
Sbjct: 107 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166
Query: 213 TNVEEAF 219
V E F
Sbjct: 167 DGVREVF 173
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 3 IMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+L+GNK DL RRE VK EEG A G +ME SAK V E F
Sbjct: 114 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE-DARQHS 167
ID + L + DTAGQE F ++ Y R G L+VY +T + +F H+ + + R
Sbjct: 61 IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 120
Query: 168 NSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK-LATNVEEAFIDTAKEI 226
+ ++L+ NK DL R+V +++G+ A ++ + ++ETSAK NV++ F D + I
Sbjct: 121 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
Query: 227 YEK 229
++
Sbjct: 181 RQQ 183
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK-LATNVEEAFIDTAKEIYEK 59
++L+ NK DL R+V +++G+ A ++ + ++ETSAK NV++ F D + I ++
Sbjct: 126 MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE-DARQHS 167
ID + L + DTAGQE F ++ Y R G L+VY +T + +F H+ + + R
Sbjct: 56 IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 115
Query: 168 NSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK-LATNVEEAFIDTAKEI 226
+ ++L+ NK DL R+V +++G+ A ++ + ++ETSAK NV++ F D + I
Sbjct: 116 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175
Query: 227 YEK 229
++
Sbjct: 176 RQQ 178
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK-LATNVEEAFIDTAKEIYEK 59
++L+ NK DL R+V +++G+ A ++ + ++ETSAK NV++ F D + I ++
Sbjct: 121 MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 178
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE-DARQHS 167
ID + L + DTAGQE F ++ Y R G L+VY +T + +F H+ + + R
Sbjct: 61 IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 120
Query: 168 NSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK-LATNVEEAFIDTAKEI 226
+ ++L+ NK DL R+V +++G+ A ++ + ++ETSAK NV++ F D + I
Sbjct: 121 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
Query: 227 YEK 229
++
Sbjct: 181 RQQ 183
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK-LATNVEEAFIDTAKEIYEK 59
++L+ NK DL R+V +++G+ A ++ + ++ETSAK NV++ F D + I ++
Sbjct: 126 MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE-DARQHS 167
ID + L + DTAGQE F ++ Y R G L+VY +T + +F H+ + + R
Sbjct: 61 IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 120
Query: 168 NSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK-LATNVEEAFIDTAKEI 226
+ ++L+ NK DL R+V +++G+ A ++ + ++ETSAK NV++ F D + I
Sbjct: 121 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
Query: 227 YEK 229
++
Sbjct: 181 RQQ 183
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK-LATNVEEAFIDTAKEIYEK 59
++L+ NK DL R+V +++G+ A ++ + ++ETSAK NV++ F D + I ++
Sbjct: 126 MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
I +DGKQ++L +WDTAG E + + Y L+ + I ++ ++ W + +
Sbjct: 49 IEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 107
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
H N+ I+L+GNK DL RRE VK EEG A G +ME SAK
Sbjct: 108 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 167
Query: 213 TNVEEAF 219
V E F
Sbjct: 168 DGVREVF 174
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 3 IMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+L+GNK DL RRE VK EEG A G +ME SAK V E F
Sbjct: 115 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
I +DGKQ++L +WDTAGQE + + Y L+ + I ++ ++ W + +
Sbjct: 46 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 104
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFA-REHGLVFMETSAKLA 212
H N+ I+L+GNK DL RRE V+ EEG A R ++E SAK
Sbjct: 105 HFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTK 164
Query: 213 TNVEEAF 219
V E F
Sbjct: 165 EGVREVF 171
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 3 IMLIGNKSDL----DARRE--------VKKEEGEVFA-REHGLVFMETSAKLATNVEEAF 49
I+L+GNK DL RRE V+ EEG A R ++E SAK V E F
Sbjct: 112 IILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
I +DGKQ++L +WDTAGQE + + Y L+ + I ++ ++ W + +
Sbjct: 66 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 124
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFA-REHGLVFMETSAKLA 212
H N+ I+L+GNK DL RRE V+ EEG A R ++E SAK
Sbjct: 125 HFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTK 184
Query: 213 TNVEEAF 219
V E F
Sbjct: 185 EGVREVF 191
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 3 IMLIGNKSDL----DARRE--------VKKEEGEVFA-REHGLVFMETSAKLATNVEEAF 49
I+L+GNK DL RRE V+ EEG A R ++E SAK V E F
Sbjct: 132 IILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH 166
I +DGKQ++L +WDTAGQE + + Y L+ + I ++ ++ +H
Sbjct: 66 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 125
Query: 167 SNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFA-REHGLVFMETSAKLAT 213
N+ I+L+GNK DL RRE V+ EEG A R ++E SAK
Sbjct: 126 FXPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE 185
Query: 214 NVEEAF 219
V E F
Sbjct: 186 GVREVF 191
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 3 IMLIGNKSDL----DARRE--------VKKEEGEVFA-REHGLVFMETSAKLATNVEEAF 49
I+L+GNK DL RRE V+ EEG A R ++E SAK V E F
Sbjct: 132 IILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
++I+ D LQI DT G F ++ R +LV+ +T +++ L +
Sbjct: 47 QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIV 106
Query: 165 QHSNS--NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
Q S ++ +ML+GNK D + +REV E + A+E FMETSAK+ NV+E F
Sbjct: 107 QIKGSVEDIPVMLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
+ML+GNK D + +REV E + A+E FMETSAK+ NV+E F
Sbjct: 117 VMLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW---LE 161
++IT++G++ LQ+ DTAGQ+ + ++Y G +LVY +T ++F + L
Sbjct: 45 KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLL 104
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK 210
D + IML+GNK DL R + EEG+ A F+E+SAK
Sbjct: 105 DMV--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 151
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK 40
IML+GNK DL R + EEG+ A F+E+SAK
Sbjct: 114 IMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 151
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW---LE 161
++IT++G++ LQ+ DTAGQ+ + ++Y G +LVY +T ++F + L
Sbjct: 40 KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLL 99
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK 210
D + IML+GNK DL R + EEG+ A F+E+SAK
Sbjct: 100 DMV--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 146
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK 40
IML+GNK DL R + EEG+ A F+E+SAK
Sbjct: 109 IMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 146
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 15/131 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ + GK + L IWDTAGQ+ + + +Y A+ LL +D+T +F+++ W +
Sbjct: 75 LQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-N 133
Query: 166 HSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKLA 212
H + I+++G K+DL + V G+ AR G V ++E SA+L
Sbjct: 134 HFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLH 193
Query: 213 TNVEEAFIDTA 223
NV F + A
Sbjct: 194 DNVHAVFQEAA 204
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW---LE 161
++IT++G++ LQ+ DTAGQ+ + ++Y G +LVY +T ++F + L
Sbjct: 43 KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLL 102
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK 210
D + IML+GNK DL R + EEG+ A F+E+SAK
Sbjct: 103 DMV--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 149
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK 40
IML+GNK DL R + EEG+ A F+E+SAK
Sbjct: 112 IMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 149
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW---LE 161
++IT++G++ LQ+ DTAGQ+ + ++Y G +LVY +T ++F + L
Sbjct: 45 KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLL 104
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK 210
D + IML+GNK DL R + EEG+ A F+E+SAK
Sbjct: 105 DMV--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 151
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK 40
IML+GNK DL R + EEG+ A F+E+SAK
Sbjct: 114 IMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 151
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 12/130 (9%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDARQ 165
+ +DG+ + L +WDTAGQE + + YRGA +L + + + ++ N L W+ + R+
Sbjct: 50 VAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRR 109
Query: 166 HSNSNMVIMLIGNKSDL--------DARREVKKEEGEVFAREHG-LVFMETSAKLATNVE 216
+ N+ I+L+G K DL D + +GE ++ G ++E S+K NV+
Sbjct: 110 FA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVK 168
Query: 217 EAFIDTAKEI 226
F DTA ++
Sbjct: 169 AVF-DTAIKV 177
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
I +DGKQ++L +WDTAGQE + Y L+ + I ++ ++ W + +
Sbjct: 46 IEVDGKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 104
Query: 166 HSNSNMVIMLIGNKSDL-----DAR-------REVKKEEGEVFAREHGLV-FMETSAKLA 212
H N+ I+L+GNK DL AR VK EG A G +ME SAK
Sbjct: 105 HFCPNVPIILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTK 164
Query: 213 TNVEEAF 219
V E F
Sbjct: 165 DGVREVF 171
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAF-RSITR-SYYRGAAGALLVYDITRRETFNHLTTW-LE 161
R +T+DG+ L + DT E +S ++ S +G + ++VY I R +F + ++
Sbjct: 43 RTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQ 102
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
R H ++ I+L+GNK+DL REV EEG A F+ETSA L NV E F
Sbjct: 103 LRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 28/47 (59%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
I+L+GNK+DL REV EEG A F+ETSA L NV E F
Sbjct: 114 IILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF---NHLTTWLE 161
R I +DG++ L ++D Q+ R + ++VY +T + +F + L L
Sbjct: 40 RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR 99
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
ARQ ++ I+L+GNKSDL REV +EG A F+ETSA L NV+ F
Sbjct: 100 RARQ--TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEG 157
Query: 222 TAKEI 226
++I
Sbjct: 158 VVRQI 162
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
I+L+GNKSDL REV +EG A F+ETSA L NV+ F ++I
Sbjct: 109 IILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF---NHLTTWLE 161
R I +DG++ L ++D Q+ R + ++VY +T + +F + L L
Sbjct: 45 RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR 104
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
ARQ ++ I+L+GNKSDL REV +EG A F+ETSA L NV+ F
Sbjct: 105 RARQ--TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEG 162
Query: 222 TAKEI 226
++I
Sbjct: 163 VVRQI 167
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
I+L+GNKSDL REV +EG A F+ETSA L NV+ F ++I
Sbjct: 114 IILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF---NHLTTWLE 161
R I +DG++ L ++D Q+ R + ++VY +T + +F + L L
Sbjct: 45 RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR 104
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
ARQ ++ I+L+GNKSDL REV +EG A F+ETSA L NV+ F
Sbjct: 105 RARQ--TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEG 162
Query: 222 TAKEI 226
++I
Sbjct: 163 VVRQI 167
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
I+L+GNKSDL REV +EG A F+ETSA L NV+ F ++I
Sbjct: 114 IILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DG + L +WDTAGQE + + YRGA LL + + + ++ ++ WL + +
Sbjct: 47 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK- 105
Query: 166 HSNSNMVIMLIGNKSDLDARREVKKE----------EGEVFAREHGLV-FMETSAKLATN 214
H + I+L+G K DL ++ K+ +GE + G V ++E S+K N
Sbjct: 106 HYAPGIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQN 165
Query: 215 VEEAFIDTA 223
V+ F DTA
Sbjct: 166 VKAVF-DTA 173
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
I +DGKQ++L +WDTAGQE + + Y L+ + + ++ ++ W+ + +
Sbjct: 66 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK- 124
Query: 166 HSNSNMVIMLIGNKSDLDA------------RREVKKEEGEVFA-REHGLVFMETSAKLA 212
H N+ I+L+ NK DL + + V+ ++G A R ++E SAK
Sbjct: 125 HFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTK 184
Query: 213 TNVEEAF 219
V E F
Sbjct: 185 EGVREVF 191
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDAR 164
++++DG+ ++LQ+ DTAGQ+ F + Y LL + + +F +++ W+ + R
Sbjct: 60 VVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR 119
Query: 165 QHSNSNMVIMLIGNKSDL--DAR----------REVKKEEGEVFARE-HGLVFMETSAKL 211
H I+L+G +SDL D + + V +E ++ A E ++E SA
Sbjct: 120 CHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALT 178
Query: 212 ATNVEEAF 219
N++E F
Sbjct: 179 QKNLKEVF 186
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 100 VEFGARMITIDGKQIKLQIW--DTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT 157
VE +TI + ++++ DTAG + ++ Y+ G A+LV+D++ E+F
Sbjct: 57 VEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCK 116
Query: 158 TW---LEDARQHSNSNMVIMLIGNKSDLDARR-EVKKEEGEVFAREHGLVFMETSA-KLA 212
W L+ AR + +L+ NK+DL +R +V+ + + +A + L F + SA
Sbjct: 117 AWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPG 176
Query: 213 TNVEEAFIDTAKEIYEKIQEGV 234
+ + F+ A Y ++ V
Sbjct: 177 KDADAPFLSIATTFYRNYEDKV 198
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDARQ 165
+ +DG + L +WDTAGQE + + YRGA +L + + + ++ N W+ + R
Sbjct: 47 VVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR- 105
Query: 166 HSNSNMVIMLIGNKSDLDARRE----------VKKEEGEVFAREHG-LVFMETSAKLATN 214
H + I+L+G K DL ++ + +GE + G +++E S+K N
Sbjct: 106 HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQN 165
Query: 215 VEEAF 219
V+ F
Sbjct: 166 VKAVF 170
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAGQE + + Y +L+ + + +F ++ W + R
Sbjct: 46 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 105
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 106 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAGQE + + Y +L+ + + +F ++ W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAGQE + + Y +L+ + + +F ++ W + R
Sbjct: 48 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 107
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 108 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 163
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 105 RMITIDGKQ---IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF---NHLTT 158
R + +DG+ I L +W+ G+ + + + L+VY IT R +F + L
Sbjct: 78 RTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI 135
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
L ARQ ++ I+L+GNKSDL REV EG A F+ETSA + NV+E
Sbjct: 136 QLRRARQ--TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 193
Query: 219 F 219
F
Sbjct: 194 F 194
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
I+L+GNKSDL REV EG A F+ETSA + NV+E F
Sbjct: 148 IILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAGQE + + Y +L+ + + +F ++ W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 105 RMITIDGKQ---IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF---NHLTT 158
R + +DG+ I L +W+ G+ + + + L+VY IT R +F + L
Sbjct: 47 RTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI 104
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
L ARQ ++ I+L+GNKSDL REV EG A F+ETSA + NV+E
Sbjct: 105 QLRRARQ--TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 162
Query: 219 F 219
F
Sbjct: 163 F 163
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
I+L+GNKSDL REV EG A F+ETSA + NV+E F
Sbjct: 117 IILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 163
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 15/125 (12%)
Query: 116 LQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIML 175
L +WDTAGQE + + Y + LL + + R +F++++T E +H +L
Sbjct: 73 LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVL 132
Query: 176 IGNKSDL--DARREVKKEEGEVFAREHGLV-FMETS--AKLATNVEEAFIDTAKEIYEKI 230
+G K DL D +V K+EG+ ++ G V ++E S AK+ N E++EK
Sbjct: 133 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN----------EVFEKS 182
Query: 231 QEGVF 235
+ +F
Sbjct: 183 VDCIF 187
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 15/125 (12%)
Query: 116 LQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIML 175
L +WDTAGQE + + Y + LL + + R +F++++T E +H +L
Sbjct: 72 LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVL 131
Query: 176 IGNKSDL--DARREVKKEEGEVFAREHGLV-FMETS--AKLATNVEEAFIDTAKEIYEKI 230
+G K DL D +V K+EG+ ++ G V ++E S AK+ N E++EK
Sbjct: 132 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN----------EVFEKS 181
Query: 231 QEGVF 235
+ +F
Sbjct: 182 VDCIF 186
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 105 RMITIDGKQ---IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF---NHLTT 158
R + +DG+ I L +W+ G+ + + + L+VY IT R +F + L
Sbjct: 47 RTLMVDGESATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRI 104
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
L ARQ ++ I+L+GNKSDL REV EG A F+ETSA + NV+E
Sbjct: 105 QLRRARQ--TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKEL 162
Query: 219 F 219
F
Sbjct: 163 F 163
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
I+L+GNKSDL REV EG A F+ETSA + NV+E F
Sbjct: 117 IILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 105 RMITIDGKQ---IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF---NHLTT 158
R + +DG+ I L +W+ G+ + + + L+VY IT R +F + L
Sbjct: 47 RTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI 104
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
L ARQ ++ I+L+GNKSDL REV EG A F+ETSA + NV+E
Sbjct: 105 QLRRARQ--TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162
Query: 219 F 219
F
Sbjct: 163 F 163
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
I+L+GNKSDL REV EG A F+ETSA + NV+E F
Sbjct: 117 IILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAGQE + + Y L+ + + +F ++ W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAG E + + Y L+ + + +F+H+ W + R
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH 255
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSAKLA 212
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 256 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314
Query: 213 TNVEEAF 219
++ F
Sbjct: 315 RGLKTVF 321
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAG E + + Y L+ + + +F+H+ W + R
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH 255
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSAKLA 212
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 256 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314
Query: 213 TNVEEAF 219
++ F
Sbjct: 315 RGLKTVF 321
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAG E + + Y L+ + + +F+H+ W + R
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH 255
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 256 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAGQE + + Y L+ + + +F ++ W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAGQE + + Y L+ + + +F ++ W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAGQE + + Y L+ + + +F ++ W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAGQE + + Y L+ + + +F ++ W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAGQE + + Y L+ + + +F ++ W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAGQE + + Y L+ + + +F ++ W + R
Sbjct: 63 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 122
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 123 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 178
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAGQE + + Y L+ + + +F ++ W + R
Sbjct: 71 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSAKLA 212
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 131 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 189
Query: 213 TNVEEAF 219
++ F
Sbjct: 190 RGLKTVF 196
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAGQE + + Y L+ + + +F ++ W + R
Sbjct: 51 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 110
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 111 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 166
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAGQE + + Y L+ + + +F ++ W + R
Sbjct: 71 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSAKLA 212
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 131 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 189
Query: 213 TNVEEAF 219
++ F
Sbjct: 190 RGLKTVF 196
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAGQE + + Y L+ + + +F ++ W + R
Sbjct: 54 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 113
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 114 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 169
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGA-LLVYDITRRETFNHLT-TWLED 162
R I +D +++ L ++D Q R + A L+V+ +T R +F+ + T L
Sbjct: 63 RRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRL 122
Query: 163 ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDT 222
+ ++ ++L+GNKSDL REV EEG A +ETSA L N E F
Sbjct: 123 RAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 182
Query: 223 AKEI 226
++I
Sbjct: 183 VRQI 186
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+ ++L+GNKSDL REV EEG A +ETSA L N E F ++I
Sbjct: 131 LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
+ +DG++++L +WDTAGQE + + Y + L+ + I ++ ++ W+ +
Sbjct: 51 VEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL- 109
Query: 166 HSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKLA 212
H + I+L+G K DL + ++ V +EG+ A + G + E SAK
Sbjct: 110 HFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTG 169
Query: 213 TNVEEAF 219
V E F
Sbjct: 170 YGVREVF 176
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAGQE + + Y L+ + + +F ++ W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDLDARRE------------VKKEEGEVFAREHGLV-FMETSAKLA 212
H + I+L+G K DL ++ + +G ARE G V ++E SA
Sbjct: 104 HC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQ 162
Query: 213 TNVEEAF 219
++ F
Sbjct: 163 RGLKTVF 169
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAGQE + + Y L+ + + +F ++ W + R
Sbjct: 45 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 104
Query: 166 HSNSNMVIMLIGNKSDLDARRE------------VKKEEGEVFAREHGLV-FMETSAKLA 212
H + I+L+G K DL ++ + +G ARE G V ++E SA
Sbjct: 105 HC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQ 163
Query: 213 TNVEEAF 219
++ F
Sbjct: 164 RGLKTVF 170
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAGQE + + Y L+ + + +F ++ W + R
Sbjct: 45 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 104
Query: 166 HSNSNMVIMLIGNKSDLDARRE------------VKKEEGEVFAREHGLV-FMETSAKLA 212
H + I+L+G K DL ++ + +G ARE G V ++E SA
Sbjct: 105 HC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQ 163
Query: 213 TNVEEAF 219
++ F
Sbjct: 164 RGLKTVF 170
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH- 166
T+D + + L++ DTA + R+ R Y A L+VY + R++F+ +++LE H
Sbjct: 63 TVDHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHA 121
Query: 167 --SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKL-ATNVEEAFIDTA 223
+ ++ +L+GNK D+ R+V K EG A G +F E SA L +V+ F +
Sbjct: 122 KETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181
Query: 224 KE 225
+E
Sbjct: 182 RE 183
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 4 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKL-ATNVEEAFIDTAKE 55
+L+GNK D+ R+V K EG A G +F E SA L +V+ F + +E
Sbjct: 131 LLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 17/136 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
+ ++G + L +WDTAGQE + + YRGA +L + + + ++ +++ W+ + +
Sbjct: 49 VVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK- 107
Query: 166 HSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETS-----AKLATNVEEAFI 220
H + I+L+G K DL +++ + F G V + T KL A+I
Sbjct: 108 HYAPGVPIVLVGTKLDL-------RDDKQFFIDHPGAVPITTVQGEELKKLIG--APAYI 158
Query: 221 DTAKEIYEKIQEGVFD 236
+ + + E ++ GVFD
Sbjct: 159 ECSSKSQENVK-GVFD 173
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAG E + + Y L+ + + +F ++ W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDARQ 165
+ +DGK + L +WDTAG E + + Y L+ + + +F N W + R
Sbjct: 44 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQ-EAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
R I +D +++ L ++D Q +A + + L+V+ +T R +F+ + T L
Sbjct: 42 RRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRL 101
Query: 163 ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDT 222
+ ++ ++L+GNKSDL REV EEG A +ETSA L N E F
Sbjct: 102 RAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161
Query: 223 AKEI 226
++I
Sbjct: 162 VRQI 165
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+ ++L+GNKSDL REV EEG A +ETSA L N E F ++I
Sbjct: 110 LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAG E + + Y L+ + + +F ++ W + R
Sbjct: 47 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 106
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 107 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 162
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQ-EAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
R I +D +++ L ++D Q +A + + L+V+ +T R +F+ + T L
Sbjct: 52 RRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRL 111
Query: 163 ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDT 222
+ ++ ++L+GNKSDL REV EEG A +ETSA L N E F
Sbjct: 112 RAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 171
Query: 223 AKEI 226
++I
Sbjct: 172 VRQI 175
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+ ++L+GNKSDL REV EEG A +ETSA L N E F ++I
Sbjct: 120 LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +DGK + L +WDTAG E + + Y L+ + + +F ++ W + R
Sbjct: 71 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSAKLA 212
H N I+L+G K DL D + ++K +G A+E G V ++E SA
Sbjct: 131 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 189
Query: 213 TNVEEAF 219
++ F
Sbjct: 190 RGLKTVF 196
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN 168
ID ++I+L +WDT+G + ++ Y + L+ +DI+R ET + + + Q
Sbjct: 50 IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 109
Query: 169 SNMVIMLIGNKSDL 182
N ++L+G KSDL
Sbjct: 110 PNTKMLLVGCKSDL 123
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN 168
ID ++I+L +WDT+G + ++ Y + L+ +DI+R ET + + + Q
Sbjct: 66 IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 125
Query: 169 SNMVIMLIGNKSDL 182
N ++L+G KSDL
Sbjct: 126 PNTKMLLVGCKSDL 139
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN 168
ID ++I+L +WDT+G + ++ Y + L+ +DI+R ET + + + Q
Sbjct: 71 IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 130
Query: 169 SNMVIMLIGNKSDL 182
N ++L+G KSDL
Sbjct: 131 PNTKMLLVGCKSDL 144
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 15/112 (13%)
Query: 112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH-LTTWLEDARQHSNSN 170
++++L +WDT+G + ++ Y + LL +DI+R ET + L W + + S
Sbjct: 56 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST 115
Query: 171 MVIMLIGNKSDL------------DARREVKKEEGEVFAREHGL-VFMETSA 209
V +LIG K+DL + + E+G A++ G +++E SA
Sbjct: 116 RV-LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 166
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 15/112 (13%)
Query: 112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH-LTTWLEDARQHSNSN 170
++++L +WDT+G + ++ Y + LL +DI+R ET + L W + + S
Sbjct: 57 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST 116
Query: 171 MVIMLIGNKSDL------------DARREVKKEEGEVFAREHGL-VFMETSA 209
V +LIG K+DL + + E+G A++ G +++E SA
Sbjct: 117 RV-LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 167
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 15/112 (13%)
Query: 112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH-LTTWLEDARQHSNSN 170
++++L +WDT+G + ++ Y + LL +DI+R ET + L W + + S
Sbjct: 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST 132
Query: 171 MVIMLIGNKSDL------------DARREVKKEEGEVFAREHGL-VFMETSA 209
V +LIG K+DL + + E+G A++ G +++E SA
Sbjct: 133 RV-LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 34/136 (25%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR-------ETF------ 153
+ +DGK + L +WDTAGQE + + Y G DIT R + F
Sbjct: 46 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSL 105
Query: 154 -------NHLTTWLEDARQHSNSNMVIMLIGNKSDL-DARREVKK-----------EEGE 194
N W + R H N I+L+G K DL D + ++K +G
Sbjct: 106 VSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 164
Query: 195 VFAREHGLV-FMETSA 209
A+E G V ++E SA
Sbjct: 165 AMAKEIGAVKYLECSA 180
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 19/135 (14%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A +T+ GKQ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 56 AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPE 115
Query: 163 ARQHSNSNMVIMLIGNKSDL--DAR----------REVKKEEGEVFAREHG-LVFMETSA 209
++++ N+ +LIG + DL D + + + E+G+ A+E G ++E SA
Sbjct: 116 LKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174
Query: 210 ----KLATNVEEAFI 220
L T +EA I
Sbjct: 175 LTQKGLKTVFDEAII 189
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +D K + L +WDTAGQE + + Y L+ + + ++ ++ W + R
Sbjct: 44 VMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL 182
H S +I L+G K DL
Sbjct: 104 HCPSTPII-LVGTKLDL 119
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +D K + L +WDTAGQE + + Y L+ + + ++ ++ W + R
Sbjct: 50 VMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH 109
Query: 166 HSNSNMVIMLIGNKSDL 182
H S +I L+G K DL
Sbjct: 110 HCPSTPII-LVGTKLDL 125
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
+ +D K + L +WDTAGQE + + Y L+ + + ++ ++ W + R
Sbjct: 51 VMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH 110
Query: 166 HSNSNMVIMLIGNKSDL 182
H S +I L+G K DL
Sbjct: 111 HCPSTPII-LVGTKLDL 126
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ-- 165
T+ K +K +WD GQ+ R + R YY G G + V D R+ +++ARQ
Sbjct: 38 TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 90
Query: 166 ------HSNSNMVIMLIGNKSDL-DARR--EVKKEEGEVFAREHGLVFMETSAKLATNVE 216
+ +I++ NK DL DA + E++++ G R+ + A +
Sbjct: 91 HRIINDREXRDAIILIFANKQDLPDAXKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 150
Query: 217 EAF 219
E
Sbjct: 151 EGL 153
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
T+ K +K +WD GQ+ R + R YY G G + V D R+ +++ARQ
Sbjct: 51 TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 103
Query: 168 N--------SNMVIMLIGNKSDL-DARR--EVKKEEGEVFAREHGLVFMETSAKLATNVE 216
+ + +I++ NK DL DA + E++++ G R+ + A +
Sbjct: 104 HRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 163
Query: 217 EAF 219
E
Sbjct: 164 EGL 166
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
T+ K +K +WD GQ+ R + R YY G G + V D R+ +++ARQ
Sbjct: 50 TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 102
Query: 168 N--------SNMVIMLIGNKSDL-DARR--EVKKEEGEVFAREHGLVFMETSAKLATNVE 216
+ + +I++ NK DL DA + E++++ G R+ + A +
Sbjct: 103 HRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 162
Query: 217 EAF 219
E
Sbjct: 163 EGL 165
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
T+ K +K +WD GQ+ R + R YY G G + V D R+ +++ARQ
Sbjct: 38 TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 90
Query: 168 N--------SNMVIMLIGNKSDL-DARR--EVKKEEGEVFAREHGLVFMETSAKLATNVE 216
+ + +I++ NK DL DA + E++++ G R+ + A +
Sbjct: 91 HRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 150
Query: 217 EAF 219
E
Sbjct: 151 EGL 153
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
T+ K +K +WD GQ+ R + R YY G G + V D R+ +++ARQ
Sbjct: 38 TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 90
Query: 168 N--------SNMVIMLIGNKSDL-DARR--EVKKEEGEVFAREHGLVFMETSAKLATNVE 216
+ + +I++ NK DL DA + E++++ G R+ + A +
Sbjct: 91 HRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 150
Query: 217 EAF 219
E
Sbjct: 151 EGL 153
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
T+ K +K +WD GQ+ R + R YY G G + V D R+ +++ARQ
Sbjct: 360 TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 412
Query: 168 N--------SNMVIMLIGNKSDL 182
+ + +I++ NK DL
Sbjct: 413 HRIINDREMRDAIILIFANKQDL 435
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
T+ K +K +WD G + R + R YY G G + V D R+ +++ARQ
Sbjct: 51 TVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 103
Query: 168 N--------SNMVIMLIGNKSDL-DARR--EVKKEEGEVFAREHGLVFMETSAKLATNVE 216
+ + +I++ NK DL DA + E++++ G R+ + A +
Sbjct: 104 HRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 163
Query: 217 EAF 219
E
Sbjct: 164 EGL 166
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
T+ K +K +WD G + R + R YY G G + V D R+ +++ARQ
Sbjct: 41 TVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 93
Query: 168 N--------SNMVIMLIGNKSDL-DARR--EVKKEEGEVFAREHGLVFMETSAKLATNVE 216
+ + +I++ NK DL DA + E++++ G R+ + A +
Sbjct: 94 HRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 153
Query: 217 EAF 219
E
Sbjct: 154 EGL 156
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
T+ K +K +WD G + R + R YY G G + V D R+ +++ARQ
Sbjct: 40 TVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 92
Query: 168 N--------SNMVIMLIGNKSDL-DARR--EVKKEEGEVFAREHGLVFMETSAKLATNVE 216
+ + +I++ NK DL DA + E++++ G R+ + A +
Sbjct: 93 HRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 152
Query: 217 EAF 219
E
Sbjct: 153 EGL 155
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
T++ + I +WD GQ+ R + R YY G + V D RE ++DAR+
Sbjct: 55 TVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRER-------IDDAREEL 107
Query: 168 N--------SNMVIMLIGNKSDL 182
+ + +I++ NK DL
Sbjct: 108 HRMINEEELKDAIILVFANKQDL 130
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF----NH 155
V F R IT IKL WD GQ FRS+ Y RG + + + D +E N
Sbjct: 55 VGFNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNE 112
Query: 156 LTTWLEDARQHSNSNMVIMLIGNKSDLDA 184
L L+ + + ++++GNK DL
Sbjct: 113 LHNLLDKPQLQG---IPVLVLGNKRDLPG 138
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 7/125 (5%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
T+ K +KL +WD GQ + R R YY A + V D T ++ + + L Q
Sbjct: 56 TLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE 115
Query: 168 N-SNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA---FI 220
+ +++ NK D + EV KE V ++ + +SA + E I
Sbjct: 116 ELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLI 175
Query: 221 DTAKE 225
D KE
Sbjct: 176 DVIKE 180
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 24/128 (18%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
G + T++ + KL IWD GQ++ RS R+Y+ G + V D R+ ++
Sbjct: 48 LGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR-------MQ 100
Query: 162 DARQHSNSNMV--------IMLIGNKSDL------DARREVKKEEGEVFAREHGLVFMET 207
D ++ S +V +++ NK DL +A REV + + R H
Sbjct: 101 DCQRELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDS---IRSHHWCIQGC 157
Query: 208 SAKLATNV 215
SA N+
Sbjct: 158 SAVTGENL 165
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF----NH 155
V F R +T + ++IWD GQ FRS+ Y RG + + D RE N
Sbjct: 55 VGFNMRKVT--KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNE 112
Query: 156 LTTWLEDARQHSNSNMVIMLIGNKSDL 182
L L+ + + ++++GNK DL
Sbjct: 113 LHNLLDKPQLQG---IPVLVLGNKRDL 136
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR 150
T+ K I +WD GQ+ RS+ R YYR G + V D R
Sbjct: 55 TVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDR 97
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR 150
T+ K I +WD GQ+ RS+ R YYR G + V D R
Sbjct: 55 TVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDR 97
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR 150
T+ K I +WD GQ+ RS+ R YYR G + V D R
Sbjct: 38 TVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDR 80
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
G + T++ + KL IWD GQ++ RS R+Y+ G + V D R+ ++
Sbjct: 50 LGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR-------MQ 102
Query: 162 DARQHSNSNMV--------IMLIGNKSDL 182
D ++ S +V +++ NK DL
Sbjct: 103 DCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
G + T++ + KL IWD GQ++ RS R+Y+ G + V D R+ ++
Sbjct: 50 LGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR-------MQ 102
Query: 162 DARQHSNSNMV--------IMLIGNKSDL 182
D ++ S +V +++ NK DL
Sbjct: 103 DCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF----NH 155
V F R IT IKL WD GQ FRS+ Y RG + + + D +E N
Sbjct: 64 VGFNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNE 121
Query: 156 LTTWLEDARQHSNSNMVIMLIGNKSDLDA 184
L L+ + + ++++GNK DL
Sbjct: 122 LHNLLDKPQLQG---IPVLVLGNKRDLPG 147
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH-----LTTWLED 162
T++ K I +WD GQ+ R + R Y++ G + V D RE N + ED
Sbjct: 55 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 114
Query: 163 ARQHSNSNMVIMLIGNKSDL 182
+ + V+++ NK DL
Sbjct: 115 ELRDA----VLLVFANKQDL 130
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
T++ K I +WD GQ+ R + R Y++ G + V D RE N E R +
Sbjct: 203 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLA 260
Query: 168 NSNM---VIMLIGNKSDL 182
+ V+++ NK DL
Sbjct: 261 EDELRDAVLLVFANKQDL 278
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH-----LTTWLED 162
T++ K I +WD GQ+ R + R Y++ G + V D RE N + ED
Sbjct: 54 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 113
Query: 163 ARQHSNSNMVIMLIGNKSDL 182
+ + V+++ NK DL
Sbjct: 114 ELRDA----VLLVFANKQDL 129
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFN 154
T++ K I +WD GQ+ R + R Y++ G + V D RE N
Sbjct: 38 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN 84
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
T++ K I +WD GQ+ R + R Y++ G + V D RE L+ Q
Sbjct: 67 TVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQED 126
Query: 168 N-SNMVIMLIGNKSDL 182
+ V+++ NK D+
Sbjct: 127 ELRDAVLLVFANKQDM 142
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
G + T++ + KL IWD GQ++ RS R+Y+ G + V D R+ +
Sbjct: 50 LGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRX-------Q 102
Query: 162 DARQHSNSNMV--------IMLIGNKSDL 182
D ++ S +V +++ NK DL
Sbjct: 103 DCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 10/119 (8%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF----NHLTTWLEDA 163
T+ K +K Q+WD GQ + R R YY + V D R+ + L LE+
Sbjct: 40 TVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE 99
Query: 164 RQHSNSNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
++++ NK D++ E+ G ++ +TSA T ++EA
Sbjct: 100 ELR---KAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAM 155
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
T++ K I +WD GQ+ R + + Y++ G + V D RE + L+
Sbjct: 55 TVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVD 114
Query: 168 N-SNMVIMLIGNKSDL 182
+ V++L NK DL
Sbjct: 115 ELRDAVLLLFANKQDL 130
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
G + T++ + KL IWD G ++ RS R+Y+ G + V D R+ ++
Sbjct: 33 LGFNIKTLEHRGFKLNIWDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQR-------MQ 85
Query: 162 DARQHSNSNMV--------IMLIGNKSDL 182
D ++ S +V +++ NK DL
Sbjct: 86 DCQRELQSLLVEERLAGATLLIFANKQDL 114
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRE 151
T++ K I +WD GQ+ R + R Y++ G + V D R+
Sbjct: 58 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 101
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
T++ K I +WD GQ+ R + R YY+ + V D R+ E+ +
Sbjct: 55 TVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAR---EELMKML 111
Query: 168 N----SNMVIMLIGNKSDL 182
N N ++++ NK DL
Sbjct: 112 NEDEMRNAILLVFANKHDL 130
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFN 154
T++ K I +WD G + R + R Y++ G + V D RE N
Sbjct: 40 TVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVN 86
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 10/119 (8%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF----NHLTTWLEDA 163
T+ K +K Q+WD G + R R YY + V D R+ + L LE+
Sbjct: 42 TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE 101
Query: 164 RQHSNSNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
++++ NK D++ E+ G ++ +TSA T ++EA
Sbjct: 102 ELR---KAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 157
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 51 AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 110
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 111 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 169
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 41 AVTVXIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 100
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 101 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 41 AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 100
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 101 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 41 AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 100
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 101 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 41 AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 100
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 101 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 41 AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 100
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 101 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 45 AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 104
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 105 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 163
Query: 210 KLATNVEEAF 219
++ F
Sbjct: 164 LTQKGLKNVF 173
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 43 AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 102
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 103 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 161
Query: 210 KLATNVEEAF 219
++ F
Sbjct: 162 LTQKGLKNVF 171
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 41 AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 100
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 101 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 41 AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 100
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 101 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 41 AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 100
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 101 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 44 AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 103
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 104 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 162
Query: 210 KLATNVEEAF 219
++ F
Sbjct: 163 LTQKGLKNVF 172
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 41 AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 100
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 101 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 42 AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 101
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 102 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 160
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 41 AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 100
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 101 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 48 AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 107
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 108 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 166
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 44 AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 103
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 104 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 162
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 41 AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 100
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 101 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 43 AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 102
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 103 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 161
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L ++DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 48 AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 107
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 108 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 166
Query: 210 KLATNVEEAF 219
++ F
Sbjct: 167 LTQKGLKNVF 176
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRE 151
I +WD GQ+ RS+ R YY G + V D R
Sbjct: 60 NISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRS 98
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 116 LQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRET-FNHLTTWLEDARQHSNSNMVIM 174
L +WD AG+E F S + A L VYD+++ + + WL + + ++S+ VI
Sbjct: 56 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI- 114
Query: 175 LIGNKSDLDARREVK 189
L+G D+ ++ K
Sbjct: 115 LVGTHLDVSDEKQRK 129
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 15/130 (11%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
A + I G+ L + DTAGQE + + Y L+ + + +F ++ W+ +
Sbjct: 41 AVTVMIGGEPYTLGLRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 100
Query: 163 ARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSA 209
H +L+G + DL + ++ + E E AR+ V ++E SA
Sbjct: 101 ITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
Query: 210 KLATNVEEAF 219
++ F
Sbjct: 160 LTQKGLKNVF 169
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 116 LQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRET-FNHLTTWLEDARQHSNSNMVIM 174
L +WD AG+E F S + A L VYD+++ + + WL + + ++S+ VI
Sbjct: 58 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI- 116
Query: 175 LIGNKSDLDARREVK 189
L+G D+ ++ K
Sbjct: 117 LVGTHLDVSDEKQRK 131
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYD--------ITRRETFNHLTTWLEDA 163
K +WD GQE+ RS +YY +LV D IT+ E + L ED
Sbjct: 58 KNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAH--EDL 115
Query: 164 RQHSNSNMVIMLIGNKSDL 182
R+ + +++ NK D+
Sbjct: 116 RKAA-----VLIFANKQDM 129
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRE 151
T+ K +K Q+WD G + R R YY + V D R+
Sbjct: 45 TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD 88
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 103 GARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED 162
G + ++ + KL +WD GQ R RSY+ + V D R+ F L +
Sbjct: 50 GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTE 109
Query: 163 ARQHSNSNMVIMLI-GNKSDL 182
+ + V +LI NK DL
Sbjct: 110 LLEEEKLSCVPVLIFANKQDL 130
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 115 KLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRE 151
+ +WD GQE+ RS +YY ++V D T RE
Sbjct: 67 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 103
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 115 KLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRE 151
+ +WD GQE+ RS +YY ++V D T RE
Sbjct: 61 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 115 KLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRE 151
+ +WD GQE+ RS +YY ++V D T RE
Sbjct: 66 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 102
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 115 KLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRE 151
+ +WD GQE+ RS +YY ++V D T RE
Sbjct: 61 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 103 GARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED 162
G + ++ + KL +WD GQ R RSY+ + V D R+ F L +
Sbjct: 49 GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTE 108
Query: 163 ARQHSNSNMVIMLI-GNKSDL 182
+ + V +LI NK DL
Sbjct: 109 LLEEEKLSCVPVLIFANKQDL 129
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFN---HLTTWLEDAR 164
T+ K I ++WD GQ R R Y+ + V D T R+ H L D
Sbjct: 60 TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDED 119
Query: 165 QHSNSNMVIMLIGNKSDL-DARREVKKEE 192
+ S ++++ NK DL DA E + E
Sbjct: 120 ELRKS--LLLIFANKQDLPDAASEAEIAE 146
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 103 GARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED 162
G + ++ + KL +WD GQ R RSY+ + V D R+ F L +
Sbjct: 37 GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTE 96
Query: 163 ARQHSNSNMVIMLI-GNKSDL 182
+ + V +LI NK DL
Sbjct: 97 LLEEEKLSCVPVLIFANKQDL 117
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 103 GARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED 162
G + ++ + KL +WD G R RSY+ + V D R+ F L +
Sbjct: 37 GFNIKSVQSQGFKLNVWDIGGLRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTE 96
Query: 163 ARQHSNSNMVIMLI-GNKSDL 182
+ + V +LI NK DL
Sbjct: 97 LLEEEKLSCVPVLIFANKQDL 117
>pdb|3KCZ|A Chain A, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor 3-Aminobenzamide
pdb|3KCZ|B Chain B, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor 3-Aminobenzamide
pdb|3KJD|A Chain A, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor Abt-888
pdb|3KJD|B Chain B, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor Abt-888
Length = 368
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 186 REVKKEEGEVFAREHGLVFMETSAKLATNVEEAF-------IDTAKEIYEKIQ--EGVFD 236
+ +KK E + A +HG ME + T + F I T KE+ EKIQ E + D
Sbjct: 69 QSLKKIEDCIRAGQHGRALMEACNEFYTRIPHDFGLRTPPLIRTQKELSEKIQLLEALGD 128
Query: 237 ITNEVDLV 244
I + LV
Sbjct: 129 IEIAIKLV 136
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 16 REVKKEEGEVFAREHGLVFMETSAKLATNVEEAF-------IDTAKEIYEKIQ--EGVFD 66
+ +KK E + A +HG ME + T + F I T KE+ EKIQ E + D
Sbjct: 69 QSLKKIEDCIRAGQHGRALMEACNEFYTRIPHDFGLRTPPLIRTQKELSEKIQLLEALGD 128
Query: 67 I 67
I
Sbjct: 129 I 129
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 21/118 (17%)
Query: 110 DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS 169
DG KL + DT G F GALL+ D ++ + + + Q
Sbjct: 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ---- 124
Query: 170 NMVIMLIGNKSDLDAR--REVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 225
++VI+ + NK DL + VKK+ EV L + EEA + +AKE
Sbjct: 125 DLVIIPVINKIDLPSADVDRVKKQIEEV---------------LGLDPEEAILASAKE 167
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 21/118 (17%)
Query: 110 DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS 169
DG KL + DT G F GALL+ D ++ + + + Q
Sbjct: 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ---- 124
Query: 170 NMVIMLIGNKSDLDAR--REVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 225
++VI+ + NK DL + VKK+ EV L + EEA + +AKE
Sbjct: 125 DLVIIPVINKIDLPSADVDRVKKQIEEV---------------LGLDPEEAILASAKE 167
>pdb|2KPO|A Chain A, Solution Nmr Structure Of De Novo Designed Rossmann 2x2
Fold Protein, Northeast Structural Genomics Consortium
Target Or16
pdb|2LV8|A Chain A, Solution Nmr Structure De Novo Designed Rossmann 2x2 Fold
Protein, Northeast Structural Genomics Consortium (nesg)
Target Or16
Length = 110
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 152 TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREV 188
T + L +LE+ R+ S + V++L+ N +LD +E+
Sbjct: 34 TEDELKKYLEEFRKESQNIKVLILVSNDEELDKAKEL 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,933,499
Number of Sequences: 62578
Number of extensions: 201580
Number of successful extensions: 1252
Number of sequences better than 100.0: 344
Number of HSP's better than 100.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 551
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)