Query psy13390
Match_columns 245
No_of_seqs 266 out of 2435
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 18:16:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 3.5E-31 1.2E-35 206.6 16.5 142 89-230 37-178 (216)
2 2hup_A RAS-related protein RAB 99.9 8E-26 2.7E-30 174.7 19.0 142 92-233 56-198 (201)
3 2ew1_A RAS-related protein RAB 99.9 1.8E-25 6.2E-30 172.7 19.6 142 92-233 53-194 (201)
4 2a5j_A RAS-related protein RAB 99.9 2.6E-25 9E-30 170.3 19.7 143 91-233 47-189 (191)
5 3tkl_A RAS-related protein RAB 99.9 5.5E-25 1.9E-29 168.8 20.1 145 91-235 42-186 (196)
6 2fu5_C RAS-related protein RAB 99.9 9.6E-26 3.3E-30 171.3 15.5 143 92-234 35-177 (183)
7 2bme_A RAB4A, RAS-related prot 99.9 6.4E-25 2.2E-29 167.1 20.0 144 92-235 37-180 (186)
8 1zbd_A Rabphilin-3A; G protein 99.9 1.4E-24 4.9E-29 167.6 20.3 142 92-233 35-176 (203)
9 2gf9_A RAS-related protein RAB 99.9 1.1E-24 3.8E-29 166.4 19.4 141 91-231 48-188 (189)
10 2o52_A RAS-related protein RAB 99.9 6.8E-25 2.3E-29 169.3 18.4 144 92-235 52-195 (200)
11 2bcg_Y Protein YP2, GTP-bindin 99.9 9.4E-25 3.2E-29 169.1 18.8 141 91-231 34-174 (206)
12 1z0f_A RAB14, member RAS oncog 99.9 1.5E-24 5E-29 163.8 19.0 138 91-228 41-178 (179)
13 2oil_A CATX-8, RAS-related pro 99.9 1.7E-24 5.8E-29 165.9 19.6 141 92-232 52-192 (193)
14 2efe_B Small GTP-binding prote 99.9 1.5E-24 5.2E-29 164.2 18.9 138 92-229 39-176 (181)
15 3dz8_A RAS-related protein RAB 99.9 2.2E-25 7.4E-30 170.7 14.1 142 91-232 49-190 (191)
16 3tw8_B RAS-related protein RAB 99.9 1.8E-24 6.1E-29 163.6 18.6 142 91-233 35-176 (181)
17 1r2q_A RAS-related protein RAB 99.9 2.1E-24 7E-29 161.6 18.8 135 92-226 33-167 (170)
18 2g6b_A RAS-related protein RAB 99.9 1.3E-24 4.5E-29 164.4 17.8 138 92-229 38-175 (180)
19 3cpj_B GTP-binding protein YPT 99.9 5.2E-25 1.8E-29 172.8 15.8 146 92-237 40-185 (223)
20 1z08_A RAS-related protein RAB 99.9 1E-24 3.5E-29 163.4 15.9 136 92-227 33-168 (170)
21 1ek0_A Protein (GTP-binding pr 99.9 2.8E-24 9.6E-29 160.8 18.2 135 92-226 30-167 (170)
22 2il1_A RAB12; G-protein, GDP, 99.9 1.3E-24 4.6E-29 166.6 16.7 137 92-228 53-190 (192)
23 1z0j_A RAB-22, RAS-related pro 99.9 5.5E-24 1.9E-28 159.3 19.4 135 92-226 33-167 (170)
24 2hjg_A GTP-binding protein ENG 99.9 2.3E-26 7.7E-31 197.5 6.6 215 1-229 112-350 (436)
25 1g16_A RAS-related protein SEC 99.9 2E-24 6.7E-29 161.8 16.3 138 92-230 30-167 (170)
26 2fg5_A RAB-22B, RAS-related pr 99.9 2.1E-24 7.2E-29 165.4 16.6 138 91-228 49-186 (192)
27 3q72_A GTP-binding protein RAD 99.9 3.8E-24 1.3E-28 159.8 17.5 137 92-229 28-165 (166)
28 3t5g_A GTP-binding protein RHE 99.9 2.4E-24 8.1E-29 163.3 16.6 140 91-231 32-172 (181)
29 2nzj_A GTP-binding protein REM 99.9 6.6E-24 2.2E-28 159.7 18.9 138 94-231 32-172 (175)
30 3q3j_B RHO-related GTP-binding 99.9 1.4E-24 4.9E-29 169.3 15.7 139 91-231 53-206 (214)
31 2f7s_A C25KG, RAS-related prot 99.9 9E-25 3.1E-29 170.5 14.0 143 92-234 52-205 (217)
32 3cbq_A GTP-binding protein REM 99.9 4E-24 1.4E-28 164.4 17.1 135 94-228 52-188 (195)
33 1z2a_A RAS-related protein RAB 99.9 4.7E-24 1.6E-28 159.4 17.0 136 92-228 32-167 (168)
34 3cph_A RAS-related protein SEC 99.9 1.6E-23 5.4E-28 162.8 20.4 143 92-235 47-189 (213)
35 3kkq_A RAS-related protein M-R 99.9 8.8E-24 3E-28 160.4 18.5 137 91-228 44-182 (183)
36 3bc1_A RAS-related protein RAB 99.9 1.2E-23 4.2E-28 160.8 19.4 143 91-233 37-190 (195)
37 2y8e_A RAB-protein 6, GH09086P 99.9 4.8E-24 1.6E-28 161.0 16.5 138 91-228 40-177 (179)
38 2p5s_A RAS and EF-hand domain 99.9 2.6E-24 9E-29 165.8 15.3 137 91-227 54-196 (199)
39 2fn4_A P23, RAS-related protei 99.9 9E-24 3.1E-28 159.7 17.9 140 91-231 35-175 (181)
40 2g3y_A GTP-binding protein GEM 99.9 8.8E-24 3E-28 164.3 18.0 136 95-230 68-205 (211)
41 2yc2_C IFT27, small RAB-relate 99.9 2.9E-24 1E-28 166.2 15.2 141 92-232 49-196 (208)
42 4dcu_A GTP-binding protein ENG 99.9 8.1E-26 2.8E-30 195.1 6.9 216 1-230 132-371 (456)
43 1z06_A RAS-related protein RAB 99.9 1.1E-23 3.6E-28 161.0 17.8 136 92-227 47-187 (189)
44 3c5c_A RAS-like protein 12; GD 99.9 4.8E-24 1.7E-28 162.8 15.8 135 91-227 47-185 (187)
45 2hxs_A RAB-26, RAS-related pro 99.9 4.9E-24 1.7E-28 160.9 15.3 136 93-228 34-173 (178)
46 2q3h_A RAS homolog gene family 99.9 1.2E-23 4.2E-28 162.1 17.8 140 91-232 46-199 (201)
47 3q85_A GTP-binding protein REM 99.9 7.1E-24 2.4E-28 158.7 15.9 136 94-229 31-168 (169)
48 1wms_A RAB-9, RAB9, RAS-relate 99.9 3.1E-23 1.1E-27 156.4 18.9 136 92-228 34-174 (177)
49 1x3s_A RAS-related protein RAB 99.9 2.7E-23 9.3E-28 159.1 18.7 139 91-230 41-180 (195)
50 2bov_A RAla, RAS-related prote 99.9 3.2E-23 1.1E-27 160.1 18.6 140 91-231 40-180 (206)
51 3t1o_A Gliding protein MGLA; G 99.9 1.5E-24 5E-29 166.4 10.8 137 93-232 52-196 (198)
52 2a9k_A RAS-related protein RAL 99.9 4.1E-23 1.4E-27 156.9 18.6 141 91-232 44-185 (187)
53 2iwr_A Centaurin gamma 1; ANK 99.9 2E-23 7E-28 157.7 16.8 133 94-232 35-173 (178)
54 3reg_A RHO-like small GTPase; 99.9 3.9E-23 1.3E-27 158.5 18.5 137 91-229 49-189 (194)
55 3ihw_A Centg3; RAS, centaurin, 99.9 3.4E-23 1.2E-27 157.7 18.0 133 92-231 47-183 (184)
56 2atx_A Small GTP binding prote 99.9 3E-23 1E-27 159.1 17.8 135 91-227 44-192 (194)
57 3oes_A GTPase rhebl1; small GT 99.9 5.2E-24 1.8E-28 164.4 13.6 141 91-232 50-191 (201)
58 1u8z_A RAS-related protein RAL 99.9 3E-23 1E-27 154.7 17.2 136 92-228 31-167 (168)
59 1c1y_A RAS-related protein RAP 99.9 3.1E-23 1.1E-27 154.7 16.4 134 92-226 30-165 (167)
60 1ky3_A GTP-binding protein YPT 99.9 2.3E-23 8E-28 157.6 15.9 139 92-230 35-180 (182)
61 1kao_A RAP2A; GTP-binding prot 99.9 4.9E-23 1.7E-27 153.4 16.8 136 92-228 30-166 (167)
62 3clv_A RAB5 protein, putative; 99.9 1.1E-22 3.6E-27 156.8 19.1 136 92-230 34-206 (208)
63 1m7b_A RND3/RHOE small GTP-bin 99.9 2.2E-23 7.5E-28 158.6 14.9 135 92-228 34-183 (184)
64 2atv_A RERG, RAS-like estrogen 99.9 7.1E-23 2.4E-27 157.3 17.8 138 91-230 54-193 (196)
65 2j0v_A RAC-like GTP-binding pr 99.9 1.2E-23 4.1E-28 163.6 13.2 139 92-232 36-184 (212)
66 1vg8_A RAS-related protein RAB 99.9 5.6E-23 1.9E-27 159.0 16.9 139 92-231 35-178 (207)
67 2gco_A H9, RHO-related GTP-bin 99.9 1.4E-22 4.9E-27 156.3 18.4 136 91-228 51-200 (201)
68 1gwn_A RHO-related GTP-binding 99.9 3.8E-23 1.3E-27 160.1 15.2 135 92-228 55-204 (205)
69 1mky_A Probable GTP-binding pr 99.9 6.7E-24 2.3E-28 182.3 11.7 219 1-229 111-356 (439)
70 2cjw_A GTP-binding protein GEM 99.9 1.4E-22 4.9E-27 155.3 17.4 136 95-230 37-174 (192)
71 1mh1_A RAC1; GTP-binding, GTPa 99.9 1.9E-22 6.4E-27 153.2 17.7 135 92-228 32-180 (186)
72 2j1l_A RHO-related GTP-binding 99.9 7.8E-23 2.7E-27 159.4 15.5 138 91-230 60-211 (214)
73 4dsu_A GTPase KRAS, isoform 2B 99.9 3.6E-22 1.2E-26 152.0 18.6 139 92-232 31-170 (189)
74 2fv8_A H6, RHO-related GTP-bin 99.9 1.9E-22 6.6E-27 156.3 16.6 135 92-228 52-200 (207)
75 4djt_A GTP-binding nuclear pro 99.9 6E-23 2E-27 160.3 13.4 140 91-230 37-177 (218)
76 3gj0_A GTP-binding nuclear pro 99.9 4.4E-23 1.5E-27 161.5 12.2 137 91-230 41-177 (221)
77 3l0i_B RAS-related protein RAB 99.9 1.1E-24 3.6E-29 168.0 2.9 136 93-228 61-196 (199)
78 2erx_A GTP-binding protein DI- 99.9 3.1E-22 1.1E-26 149.9 15.3 134 92-226 30-165 (172)
79 3bwd_D RAC-like GTP-binding pr 99.9 4.7E-23 1.6E-27 156.1 10.8 134 92-227 35-180 (182)
80 3con_A GTPase NRAS; structural 99.9 1.1E-21 3.7E-26 149.8 18.4 137 93-231 49-186 (190)
81 4gzl_A RAS-related C3 botulinu 99.9 8.9E-23 3E-27 157.9 11.4 136 89-226 54-203 (204)
82 2ce2_X GTPase HRAS; signaling 99.9 2.2E-21 7.6E-26 144.2 18.2 133 93-227 31-164 (166)
83 4bas_A ADP-ribosylation factor 99.9 4E-22 1.4E-26 153.1 13.1 136 93-232 46-193 (199)
84 2gf0_A GTP-binding protein DI- 99.9 2E-21 6.7E-26 149.3 16.4 135 92-228 35-171 (199)
85 1f6b_A SAR1; gtpases, N-termin 99.9 5.5E-22 1.9E-26 152.7 13.0 128 92-225 51-196 (198)
86 1r8s_A ADP-ribosylation factor 99.9 1.5E-22 5.2E-27 150.7 8.8 129 94-228 28-162 (164)
87 2f9l_A RAB11B, member RAS onco 99.9 1.5E-20 5.2E-25 144.6 19.9 143 92-234 32-174 (199)
88 1m2o_B GTP-binding protein SAR 99.9 1.8E-21 6.2E-26 148.8 14.2 128 92-225 49-189 (190)
89 1upt_A ARL1, ADP-ribosylation 99.9 4.2E-22 1.4E-26 149.2 9.7 130 93-228 34-169 (171)
90 2zej_A Dardarin, leucine-rich 99.9 2.3E-22 7.7E-27 153.0 7.0 136 92-228 31-178 (184)
91 1fzq_A ADP-ribosylation factor 99.9 2.2E-21 7.4E-26 147.3 12.0 132 92-229 42-179 (181)
92 2wkq_A NPH1-1, RAS-related C3 99.9 1.6E-20 5.5E-25 155.4 17.4 137 90-228 180-330 (332)
93 2h57_A ADP-ribosylation factor 99.9 1.5E-20 5.1E-25 143.5 15.2 131 92-228 49-187 (190)
94 1ksh_A ARF-like protein 2; sma 99.9 1.1E-20 3.8E-25 143.6 14.4 132 91-228 43-180 (186)
95 1zd9_A ADP-ribosylation factor 99.9 8E-22 2.7E-26 150.5 7.8 131 92-228 49-185 (188)
96 1cip_A Protein (guanine nucleo 99.9 9.7E-22 3.3E-26 163.4 8.6 133 94-230 177-346 (353)
97 3llu_A RAS-related GTP-binding 99.9 8.9E-22 3.1E-26 151.2 7.5 129 96-226 48-195 (196)
98 2b6h_A ADP-ribosylation factor 99.9 1.4E-21 4.8E-26 149.7 8.4 129 93-227 56-190 (192)
99 3th5_A RAS-related C3 botulinu 99.8 5.1E-23 1.7E-27 159.1 0.0 134 91-226 56-203 (204)
100 1zj6_A ADP-ribosylation factor 99.8 1.9E-20 6.5E-25 142.6 14.1 130 93-228 43-178 (187)
101 2x77_A ADP-ribosylation factor 99.8 1.5E-21 5E-26 149.0 7.7 131 93-229 49-185 (189)
102 1oix_A RAS-related protein RAB 99.8 1.4E-19 4.8E-24 138.4 17.2 136 91-226 55-190 (191)
103 2h17_A ADP-ribosylation factor 99.8 1.4E-20 4.9E-25 142.6 11.2 128 92-225 47-180 (181)
104 1moz_A ARL1, ADP-ribosylation 99.8 6.3E-21 2.1E-25 144.5 9.2 133 92-230 44-182 (183)
105 3r7w_B Gtpase2, GTP-binding pr 99.8 7.2E-22 2.5E-26 161.2 4.1 129 93-228 30-174 (331)
106 2xtz_A Guanine nucleotide-bind 99.8 1.5E-20 5E-25 156.3 10.4 120 112-231 181-348 (354)
107 1azs_C GS-alpha; complex (lyas 99.8 4.5E-20 1.5E-24 155.1 12.2 130 97-230 204-387 (402)
108 3ohm_A Guanine nucleotide-bind 99.8 1.6E-20 5.6E-25 153.9 8.7 132 94-229 151-319 (327)
109 1zcb_A G alpha I/13; GTP-bindi 99.8 3.8E-20 1.3E-24 154.4 9.1 135 94-232 185-357 (362)
110 3c5h_A Glucocorticoid receptor 99.8 5.9E-21 2E-25 152.6 3.7 117 109-227 90-254 (255)
111 4fid_A G protein alpha subunit 99.8 7.4E-20 2.5E-24 150.6 9.7 135 94-232 145-332 (340)
112 3lvq_E ARF-GAP with SH3 domain 99.8 5.5E-20 1.9E-24 160.4 7.8 134 91-230 347-486 (497)
113 3r7w_A Gtpase1, GTP-binding pr 99.8 4.6E-19 1.6E-23 145.3 11.0 129 93-226 34-179 (307)
114 3o47_A ADP-ribosylation factor 99.8 8.9E-20 3.1E-24 150.9 6.4 129 94-228 193-327 (329)
115 1u0l_A Probable GTPase ENGC; p 99.8 4.1E-19 1.4E-23 145.2 9.6 121 92-223 45-168 (301)
116 2fh5_B SR-beta, signal recogni 99.8 2.8E-18 9.7E-23 133.3 13.0 127 97-225 38-213 (214)
117 2wji_A Ferrous iron transport 99.8 1.6E-18 5.6E-23 129.3 11.1 122 96-226 34-163 (165)
118 2qu8_A Putative nucleolar GTP- 99.8 1.3E-17 4.3E-22 131.0 13.8 116 114-231 76-208 (228)
119 2lkc_A Translation initiation 99.8 9.4E-18 3.2E-22 126.3 11.7 129 93-230 36-173 (178)
120 1svi_A GTP-binding protein YSX 99.7 1.5E-17 5.2E-22 127.1 10.7 128 92-226 50-193 (195)
121 3dpu_A RAB family protein; roc 99.7 2.3E-18 7.7E-23 151.4 5.1 133 92-228 68-208 (535)
122 2cxx_A Probable GTP-binding pr 99.7 2.3E-17 7.7E-22 125.5 9.7 113 115-230 45-186 (190)
123 2gj8_A MNME, tRNA modification 99.7 5.5E-18 1.9E-22 127.4 5.7 120 98-227 38-165 (172)
124 2wjg_A FEOB, ferrous iron tran 99.7 4E-17 1.4E-21 124.0 10.5 126 95-229 37-170 (188)
125 3iev_A GTP-binding protein ERA 99.7 8.3E-17 2.8E-21 131.9 13.0 130 95-227 39-181 (308)
126 2dyk_A GTP-binding protein; GT 99.7 7E-17 2.4E-21 119.4 10.1 116 100-226 37-160 (161)
127 3pqc_A Probable GTP-binding pr 99.7 3.5E-16 1.2E-20 119.2 12.9 129 91-228 48-194 (195)
128 3b1v_A Ferrous iron uptake tra 99.7 6.5E-17 2.2E-21 130.1 8.0 120 99-226 35-162 (272)
129 3a1s_A Iron(II) transport prot 99.7 1.2E-16 4.1E-21 127.7 9.0 122 99-227 37-166 (258)
130 4dhe_A Probable GTP-binding pr 99.7 3.4E-16 1.2E-20 122.2 10.1 134 93-230 57-213 (223)
131 3iby_A Ferrous iron transport 99.6 3E-16 1E-20 125.2 8.3 121 96-225 32-164 (256)
132 3cb4_D GTP-binding protein LEP 99.6 2.5E-15 8.6E-20 132.6 13.4 127 96-228 48-182 (599)
133 3gee_A MNME, tRNA modification 99.6 1.7E-16 5.8E-21 136.9 5.7 123 98-227 267-397 (476)
134 1nrj_B SR-beta, signal recogni 99.6 7.8E-17 2.7E-21 125.4 2.5 103 112-214 53-170 (218)
135 1mky_A Probable GTP-binding pr 99.6 1.9E-15 6.5E-20 129.7 9.9 122 98-229 35-167 (439)
136 2ywe_A GTP-binding protein LEP 99.6 7.1E-15 2.4E-19 129.6 13.0 113 110-228 69-184 (600)
137 3qq5_A Small GTP-binding prote 99.6 5.2E-16 1.8E-20 131.8 5.2 120 100-228 70-196 (423)
138 3i8s_A Ferrous iron transport 99.6 9.2E-16 3.1E-20 123.7 5.9 119 99-226 37-167 (274)
139 1wf3_A GTP-binding protein; GT 99.6 3.1E-15 1E-19 122.1 9.0 109 112-226 53-171 (301)
140 3k53_A Ferrous iron transport 99.6 5.7E-15 2E-19 118.9 10.5 126 95-228 33-166 (271)
141 2hjg_A GTP-binding protein ENG 99.6 7E-16 2.4E-20 132.3 5.3 127 92-227 29-164 (436)
142 2e87_A Hypothetical protein PH 99.6 2.9E-14 9.9E-19 119.2 13.0 114 113-229 213-337 (357)
143 1xzp_A Probable tRNA modificat 99.6 4.6E-14 1.6E-18 121.8 13.9 123 96-229 275-406 (482)
144 3tr5_A RF-3, peptide chain rel 99.5 3.3E-14 1.1E-18 124.1 10.9 69 112-184 80-148 (528)
145 3sjy_A Translation initiation 99.5 5E-14 1.7E-18 119.6 11.5 113 113-227 74-191 (403)
146 1lnz_A SPO0B-associated GTP-bi 99.5 1.8E-14 6E-19 119.3 8.0 111 114-228 206-330 (342)
147 1s0u_A EIF-2-gamma, translatio 99.5 2.2E-13 7.5E-18 115.8 13.9 109 113-227 80-197 (408)
148 4dkx_A RAS-related protein RAB 99.5 2.5E-14 8.6E-19 111.2 7.3 59 1-59 119-177 (216)
149 2yv5_A YJEQ protein; hydrolase 99.5 4.1E-14 1.4E-18 115.5 8.6 97 124-223 66-164 (302)
150 3p26_A Elongation factor 1 alp 99.5 4.1E-14 1.4E-18 122.8 9.1 119 98-218 95-228 (483)
151 3j2k_7 ERF3, eukaryotic polype 99.5 6E-14 2.1E-18 120.2 9.8 118 100-220 81-217 (439)
152 1wb1_A Translation elongation 99.5 2.4E-13 8.1E-18 117.8 12.5 113 106-227 67-188 (482)
153 1d2e_A Elongation factor TU (E 99.5 9.5E-14 3.3E-18 117.6 9.4 124 99-226 51-193 (397)
154 2elf_A Protein translation elo 99.5 9.2E-14 3.1E-18 116.4 9.2 117 107-229 53-181 (370)
155 2c78_A Elongation factor TU-A; 99.5 5.2E-14 1.8E-18 119.6 7.6 112 99-214 60-180 (405)
156 3l82_B F-box only protein 4; T 99.5 3.3E-14 1.1E-18 107.8 5.6 105 120-227 108-222 (227)
157 4dcu_A GTP-binding protein ENG 99.5 2.2E-14 7.4E-19 123.7 5.2 127 92-227 49-184 (456)
158 3geh_A MNME, tRNA modification 99.5 8.2E-14 2.8E-18 119.7 8.6 122 95-228 255-384 (462)
159 1jny_A EF-1-alpha, elongation 99.5 1.5E-14 5.1E-19 124.0 3.6 110 110-220 80-205 (435)
160 1kk1_A EIF2gamma; initiation o 99.5 6.7E-13 2.3E-17 112.9 13.2 109 113-227 82-199 (410)
161 1zun_B Sulfate adenylate trans 99.5 1.4E-13 4.8E-18 117.9 8.5 109 109-220 99-216 (434)
162 1r5b_A Eukaryotic peptide chai 99.4 1.4E-14 4.8E-19 125.0 1.6 107 113-219 120-243 (467)
163 3izy_P Translation initiation 99.4 5.7E-15 1.9E-19 128.6 -1.1 108 115-226 53-166 (537)
164 3avx_A Elongation factor TS, e 99.4 1.8E-13 6E-18 126.9 7.8 128 95-226 340-484 (1289)
165 1ega_A Protein (GTP-binding pr 99.4 3E-13 1E-17 110.4 7.8 109 113-226 55-173 (301)
166 1g7s_A Translation initiation 99.4 1.9E-12 6.7E-17 114.3 13.4 109 115-230 71-220 (594)
167 2qtf_A Protein HFLX, GTP-bindi 99.4 4.8E-12 1.6E-16 105.7 14.6 126 102-230 216-356 (364)
168 2qag_A Septin-2, protein NEDD5 99.4 3.3E-14 1.1E-18 118.9 1.1 130 95-230 76-235 (361)
169 1f60_A Elongation factor EEF1A 99.4 1.6E-13 5.3E-18 118.3 4.9 107 109-218 80-202 (458)
170 3t5d_A Septin-7; GTP-binding p 99.4 4.7E-13 1.6E-17 107.8 5.4 129 94-226 45-202 (274)
171 3izq_1 HBS1P, elongation facto 99.4 1.8E-13 6.2E-18 121.5 3.3 120 99-218 230-362 (611)
172 3l2o_B F-box only protein 4; s 99.4 4.9E-13 1.7E-17 106.2 5.1 104 121-227 194-307 (312)
173 2xtp_A GTPase IMAP family memb 99.3 9.1E-12 3.1E-16 99.4 11.1 124 101-228 60-208 (260)
174 2dy1_A Elongation factor G; tr 99.3 5.3E-12 1.8E-16 113.3 10.8 80 100-183 60-139 (665)
175 1zo1_I IF2, translation initia 99.3 4.6E-14 1.6E-18 121.9 -4.1 106 115-224 52-163 (501)
176 2h5e_A Peptide chain release f 99.3 1.2E-11 4.2E-16 108.0 11.1 87 94-184 62-148 (529)
177 3lxx_A GTPase IMAP family memb 99.3 1E-11 3.5E-16 97.9 9.5 124 101-228 67-214 (239)
178 2g3y_A GTP-binding protein GEM 99.3 6.9E-12 2.4E-16 97.0 8.2 59 1-59 146-204 (211)
179 2aka_B Dynamin-1; fusion prote 99.3 1.8E-12 6E-17 105.5 5.0 113 114-229 125-254 (299)
180 2ged_A SR-beta, signal recogni 99.3 1.8E-12 6.1E-17 98.6 4.2 75 112-186 89-172 (193)
181 1dar_A EF-G, elongation factor 99.2 2.5E-11 8.7E-16 109.3 10.2 68 113-184 76-143 (691)
182 2rdo_7 EF-G, elongation factor 99.2 1.2E-10 4.2E-15 105.0 12.9 69 112-184 80-148 (704)
183 3mca_A HBS1, elongation factor 99.2 2.7E-13 9.1E-18 120.1 -4.5 115 99-216 240-371 (592)
184 3lxw_A GTPase IMAP family memb 99.2 6E-11 2.1E-15 94.0 9.4 130 99-228 55-208 (247)
185 1pui_A ENGB, probable GTP-bind 99.2 4.7E-11 1.6E-15 91.9 8.4 126 93-227 54-198 (210)
186 2nzj_A GTP-binding protein REM 99.2 7.2E-11 2.5E-15 87.9 8.7 60 1-60 112-171 (175)
187 2cjw_A GTP-binding protein GEM 99.2 8E-11 2.7E-15 89.6 8.6 60 1-60 115-174 (192)
188 3q85_A GTP-binding protein REM 99.2 7.4E-11 2.5E-15 87.4 7.9 58 1-58 110-167 (169)
189 3cbq_A GTP-binding protein REM 99.2 7.7E-11 2.6E-15 89.9 7.9 58 1-58 131-188 (195)
190 3q72_A GTP-binding protein RAD 99.2 1.1E-10 3.9E-15 86.1 8.6 59 1-59 107-165 (166)
191 2xex_A Elongation factor G; GT 99.2 1.5E-10 5E-15 104.4 10.5 68 113-184 74-141 (693)
192 2j69_A Bacterial dynamin-like 99.1 8.7E-11 3E-15 105.9 8.8 111 115-228 175-325 (695)
193 3dz8_A RAS-related protein RAB 99.1 1.3E-10 4.5E-15 88.1 8.4 60 1-60 129-188 (191)
194 2a5j_A RAS-related protein RAB 99.1 1.9E-10 6.4E-15 87.2 9.0 61 1-61 127-187 (191)
195 3h2y_A GTPase family protein; 99.1 2.7E-12 9.1E-17 107.5 -1.8 187 1-209 97-311 (368)
196 2fu5_C RAS-related protein RAB 99.1 1.8E-10 6.2E-15 86.5 8.4 61 1-61 114-174 (183)
197 3ihw_A Centg3; RAS, centaurin, 99.1 2.1E-10 7E-15 86.7 8.6 59 1-59 120-181 (184)
198 3t34_A Dynamin-related protein 99.1 2.2E-11 7.6E-16 101.8 3.4 112 114-227 136-260 (360)
199 3tkl_A RAS-related protein RAB 99.1 2.7E-10 9.2E-15 86.5 8.9 61 1-61 122-182 (196)
200 3ec1_A YQEH GTPase; atnos1, at 99.1 5.4E-12 1.9E-16 105.7 -0.9 192 1-214 99-317 (369)
201 2ew1_A RAS-related protein RAB 99.1 2.5E-10 8.4E-15 87.6 8.4 61 1-61 132-192 (201)
202 2hup_A RAS-related protein RAB 99.1 2.9E-10 9.8E-15 87.1 8.7 60 1-60 135-195 (201)
203 2iwr_A Centaurin gamma 1; ANK 99.1 2.8E-10 9.6E-15 85.1 8.4 60 1-60 109-171 (178)
204 2o52_A RAS-related protein RAB 99.1 3.1E-10 1.1E-14 86.8 8.8 62 1-62 131-192 (200)
205 2bme_A RAB4A, RAS-related prot 99.1 2.9E-10 9.8E-15 85.6 8.5 62 1-62 116-177 (186)
206 2gf9_A RAS-related protein RAB 99.1 3.7E-10 1.3E-14 85.4 8.8 60 1-60 128-187 (189)
207 3vqt_A RF-3, peptide chain rel 99.1 4.5E-10 1.5E-14 98.5 10.3 72 109-184 95-166 (548)
208 3t5g_A GTP-binding protein RHE 99.1 1.9E-10 6.6E-15 86.2 6.7 59 1-59 112-170 (181)
209 2fn4_A P23, RAS-related protei 99.1 3.9E-10 1.3E-14 84.3 8.1 60 1-60 115-174 (181)
210 3h2y_A GTPase family protein; 99.1 4.5E-10 1.5E-14 94.0 9.3 96 123-225 55-157 (368)
211 1z08_A RAS-related protein RAB 99.1 3.2E-10 1.1E-14 84.0 7.3 57 1-57 112-168 (170)
212 2atv_A RERG, RAS-like estrogen 99.1 4.7E-10 1.6E-14 85.4 8.1 59 1-59 133-192 (196)
213 3tw8_B RAS-related protein RAB 99.1 6.2E-10 2.1E-14 83.2 8.6 61 1-61 114-174 (181)
214 1u8z_A RAS-related protein RAL 99.1 3.3E-10 1.1E-14 83.5 6.9 57 1-57 110-166 (168)
215 3oes_A GTPase rhebl1; small GT 99.0 2.8E-10 9.5E-15 87.1 6.5 60 1-60 130-189 (201)
216 2qnr_A Septin-2, protein NEDD5 99.0 5.9E-11 2E-15 96.7 2.9 114 110-228 72-214 (301)
217 1udx_A The GTP-binding protein 99.0 1.1E-09 3.7E-14 92.8 10.6 114 114-230 205-327 (416)
218 2a9k_A RAS-related protein RAL 99.0 6.5E-10 2.2E-14 83.5 8.3 60 1-60 124-183 (187)
219 1zbd_A Rabphilin-3A; G protein 99.0 6.7E-10 2.3E-14 84.9 8.3 61 1-61 114-174 (203)
220 2oil_A CATX-8, RAS-related pro 99.0 8E-10 2.7E-14 83.8 8.5 60 1-60 131-190 (193)
221 3bc1_A RAS-related protein RAB 99.0 7.8E-10 2.7E-14 83.6 8.4 61 1-61 128-188 (195)
222 2bov_A RAla, RAS-related prote 99.0 8.3E-10 2.9E-14 84.4 8.6 60 1-60 120-179 (206)
223 1kao_A RAP2A; GTP-binding prot 99.0 4.5E-10 1.5E-14 82.7 6.6 57 1-57 109-165 (167)
224 2g6b_A RAS-related protein RAB 99.0 8.5E-10 2.9E-14 82.5 8.0 58 1-58 117-174 (180)
225 2hxs_A RAB-26, RAS-related pro 99.0 7.8E-10 2.7E-14 82.5 7.8 57 2-58 117-173 (178)
226 1c1y_A RAS-related protein RAP 99.0 8.4E-10 2.9E-14 81.3 7.9 56 1-56 109-165 (167)
227 1r2q_A RAS-related protein RAB 99.0 4.7E-10 1.6E-14 82.9 6.5 56 1-56 112-167 (170)
228 3q3j_B RHO-related GTP-binding 99.0 4.4E-10 1.5E-14 87.0 6.6 59 1-59 132-204 (214)
229 1g16_A RAS-related protein SEC 99.0 1E-09 3.4E-14 81.1 8.3 58 1-59 109-166 (170)
230 2f7s_A C25KG, RAS-related prot 99.0 1.1E-09 3.9E-14 84.6 8.7 61 1-61 142-202 (217)
231 2il1_A RAB12; G-protein, GDP, 99.0 6.3E-10 2.1E-14 84.5 7.1 59 1-59 132-191 (192)
232 2bcg_Y Protein YP2, GTP-bindin 99.0 1.3E-09 4.6E-14 83.4 8.9 61 1-61 114-174 (206)
233 3def_A T7I23.11 protein; chlor 99.0 6.7E-10 2.3E-14 88.7 7.5 88 98-186 68-167 (262)
234 3t1o_A Gliding protein MGLA; G 99.0 7.4E-10 2.5E-14 84.0 7.2 59 1-61 136-195 (198)
235 3reg_A RHO-like small GTPase; 99.0 1.1E-09 3.9E-14 83.1 8.1 59 1-59 128-189 (194)
236 1z2a_A RAS-related protein RAB 99.0 6.9E-10 2.4E-14 81.9 6.6 57 1-57 110-166 (168)
237 1z0j_A RAB-22, RAS-related pro 99.0 9.2E-10 3.1E-14 81.4 7.2 56 1-56 112-167 (170)
238 3cpj_B GTP-binding protein YPT 99.0 5.8E-10 2E-14 86.7 6.2 61 1-61 119-179 (223)
239 1jwy_B Dynamin A GTPase domain 99.0 8.3E-10 2.8E-14 90.4 7.3 112 114-228 131-262 (315)
240 2efe_B Small GTP-binding prote 99.0 8.4E-10 2.9E-14 82.6 6.6 58 1-58 118-175 (181)
241 2wsm_A Hydrogenase expression/ 99.0 8.7E-10 3E-14 85.5 6.3 106 114-230 109-216 (221)
242 2p5s_A RAS and EF-hand domain 99.0 9.9E-10 3.4E-14 83.8 6.5 57 1-57 134-196 (199)
243 1yrb_A ATP(GTP)binding protein 99.0 2.5E-09 8.6E-14 85.1 9.1 111 114-227 109-256 (262)
244 1h65_A Chloroplast outer envel 98.9 5.2E-10 1.8E-14 89.7 4.9 92 94-186 67-170 (270)
245 2q3h_A RAS homolog gene family 98.9 2.3E-09 7.9E-14 81.7 8.3 60 1-60 125-197 (201)
246 3p32_A Probable GTPase RV1496/ 98.9 4.7E-10 1.6E-14 93.5 4.6 105 113-229 171-285 (355)
247 3ec1_A YQEH GTPase; atnos1, at 98.9 9.6E-10 3.3E-14 92.0 6.4 98 122-226 56-160 (369)
248 2fg5_A RAB-22B, RAS-related pr 98.9 1E-09 3.5E-14 83.3 5.8 57 1-57 129-185 (192)
249 1ky3_A GTP-binding protein YPT 98.9 2.9E-09 1E-13 79.5 8.2 59 1-59 119-179 (182)
250 2yc2_C IFT27, small RAB-relate 98.9 1.7E-09 5.7E-14 82.8 6.9 60 1-60 133-194 (208)
251 2y8e_A RAB-protein 6, GH09086P 98.9 1.2E-09 4.2E-14 81.4 5.8 56 1-56 120-175 (179)
252 3cph_A RAS-related protein SEC 98.9 4.3E-09 1.5E-13 80.9 9.0 60 1-61 126-185 (213)
253 2j1l_A RHO-related GTP-binding 98.9 2.4E-09 8.1E-14 82.7 7.5 59 1-59 139-210 (214)
254 2erx_A GTP-binding protein DI- 98.9 2.4E-09 8.3E-14 79.1 7.1 56 1-56 110-165 (172)
255 4dsu_A GTPase KRAS, isoform 2B 98.9 4.8E-09 1.6E-13 78.9 8.9 59 1-60 110-168 (189)
256 1ek0_A Protein (GTP-binding pr 98.9 1.7E-09 5.8E-14 79.9 6.2 56 1-56 109-167 (170)
257 1wms_A RAB-9, RAB9, RAS-relate 98.9 2.7E-09 9.2E-14 79.5 7.2 57 1-58 117-174 (177)
258 3clv_A RAB5 protein, putative; 98.9 5.7E-09 2E-13 79.4 8.9 59 1-60 148-206 (208)
259 4djt_A GTP-binding nuclear pro 98.9 2.5E-09 8.5E-14 82.7 6.6 60 1-60 118-177 (218)
260 1x3s_A RAS-related protein RAB 98.9 5.1E-09 1.7E-13 79.2 8.2 58 1-59 122-179 (195)
261 2wji_A Ferrous iron transport 98.9 6.4E-10 2.2E-14 82.3 3.0 55 1-56 109-163 (165)
262 1n0u_A EF-2, elongation factor 98.9 4.2E-09 1.4E-13 96.9 8.7 70 110-183 94-163 (842)
263 3con_A GTPase NRAS; structural 98.9 7.5E-09 2.6E-13 78.1 8.7 58 1-59 127-184 (190)
264 2ce2_X GTPase HRAS; signaling 98.9 6.1E-09 2.1E-13 76.4 7.7 56 1-57 109-164 (166)
265 1mh1_A RAC1; GTP-binding, GTPa 98.9 3.2E-09 1.1E-13 79.7 6.3 57 1-57 110-179 (186)
266 2fv8_A H6, RHO-related GTP-bin 98.9 6.3E-09 2.1E-13 79.9 7.9 58 1-58 130-200 (207)
267 1vg8_A RAS-related protein RAB 98.8 8.7E-09 3E-13 78.8 8.2 59 1-60 118-177 (207)
268 3j25_A Tetracycline resistance 98.8 8.1E-10 2.8E-14 98.8 2.2 72 108-183 61-132 (638)
269 2qag_C Septin-7; cell cycle, c 98.8 1.3E-09 4.4E-14 92.4 3.3 126 96-226 70-225 (418)
270 2j0v_A RAC-like GTP-binding pr 98.8 2.7E-09 9.2E-14 82.1 4.9 59 1-59 114-181 (212)
271 2gf0_A GTP-binding protein DI- 98.8 7.4E-09 2.5E-13 78.6 7.3 56 1-57 115-170 (199)
272 2qu8_A Putative nucleolar GTP- 98.8 9.1E-09 3.1E-13 80.2 7.6 60 1-60 143-207 (228)
273 1puj_A YLQF, conserved hypothe 98.8 1.4E-08 4.9E-13 81.7 8.6 102 118-229 3-107 (282)
274 2x2e_A Dynamin-1; nitration, h 98.8 7.7E-10 2.6E-14 92.2 0.5 109 114-225 130-255 (353)
275 2cxx_A Probable GTP-binding pr 98.8 1.4E-08 4.9E-13 76.4 6.9 56 1-59 123-185 (190)
276 1wxq_A GTP-binding protein; st 98.7 8.6E-09 3E-13 86.9 5.7 49 170-220 214-262 (397)
277 3l0i_B RAS-related protein RAB 98.7 4.3E-10 1.5E-14 85.8 -2.1 57 1-57 139-195 (199)
278 2p67_A LAO/AO transport system 98.7 1.2E-08 4.2E-13 84.4 5.4 104 113-227 148-260 (341)
279 2wkq_A NPH1-1, RAS-related C3 98.7 1.8E-08 6E-13 82.8 5.8 58 1-58 260-330 (332)
280 2wjg_A FEOB, ferrous iron tran 98.7 9.7E-09 3.3E-13 77.3 3.5 57 1-58 113-169 (188)
281 4bas_A ADP-ribosylation factor 98.7 1.3E-08 4.6E-13 77.2 4.0 58 1-60 128-191 (199)
282 4fn5_A EF-G 1, elongation fact 98.6 1.6E-07 5.6E-12 85.0 11.2 68 112-183 83-150 (709)
283 3gj0_A GTP-binding nuclear pro 98.6 1.8E-08 6.3E-13 78.0 4.4 58 1-60 120-177 (221)
284 1r8s_A ADP-ribosylation factor 98.6 3.8E-09 1.3E-13 77.6 0.1 56 1-58 102-162 (164)
285 2f9l_A RAB11B, member RAS onco 98.6 1.4E-07 4.8E-12 71.8 8.9 60 1-60 111-170 (199)
286 3r7w_B Gtpase2, GTP-binding pr 98.6 3.3E-09 1.1E-13 86.6 -0.7 57 1-58 107-174 (331)
287 1upt_A ARL1, ADP-ribosylation 98.6 8.1E-09 2.8E-13 76.3 1.2 56 1-58 109-169 (171)
288 2zej_A Dardarin, leucine-rich 98.6 1.5E-08 5.2E-13 76.2 2.7 58 1-58 113-178 (184)
289 2hf9_A Probable hydrogenase ni 98.6 9.7E-10 3.3E-14 85.5 -4.7 58 171-228 165-224 (226)
290 2www_A Methylmalonic aciduria 98.6 4.2E-07 1.4E-11 75.4 10.5 103 114-228 167-279 (349)
291 1u0l_A Probable GTPase ENGC; p 98.5 5.5E-08 1.9E-12 79.1 4.5 51 1-53 116-168 (301)
292 2x77_A ADP-ribosylation factor 98.5 1.6E-08 5.5E-13 76.3 1.1 57 1-59 124-185 (189)
293 1fzq_A ADP-ribosylation factor 98.5 1.6E-08 5.4E-13 75.9 0.5 56 1-58 118-178 (181)
294 1cip_A Protein (guanine nucleo 98.5 5.3E-08 1.8E-12 80.8 3.0 59 1-59 261-345 (353)
295 3a1s_A Iron(II) transport prot 98.5 7.6E-08 2.6E-12 76.5 3.7 55 1-56 111-165 (258)
296 2h57_A ADP-ribosylation factor 98.5 1.7E-07 5.7E-12 70.7 5.4 55 1-57 127-186 (190)
297 3b1v_A Ferrous iron uptake tra 98.5 6.8E-08 2.3E-12 77.4 3.2 54 1-55 108-161 (272)
298 1jal_A YCHF protein; nucleotid 98.5 1.2E-06 4.2E-11 72.6 10.7 42 170-211 199-240 (363)
299 1puj_A YLQF, conserved hypothe 98.5 3.4E-08 1.2E-12 79.6 1.2 117 1-125 51-176 (282)
300 1zj6_A ADP-ribosylation factor 98.4 2.1E-07 7.1E-12 70.0 5.3 55 1-57 118-177 (187)
301 3zvr_A Dynamin-1; hydrolase, D 98.4 5.5E-08 1.9E-12 87.7 2.1 108 115-225 151-275 (772)
302 1moz_A ARL1, ADP-ribosylation 98.4 3.5E-07 1.2E-11 68.2 6.1 57 1-59 120-181 (183)
303 2hf9_A Probable hydrogenase ni 98.4 2.5E-07 8.7E-12 71.7 5.4 56 2-57 166-223 (226)
304 1ksh_A ARF-like protein 2; sma 98.4 3.3E-07 1.1E-11 68.7 5.7 56 1-58 120-180 (186)
305 3ohm_A Guanine nucleotide-bind 98.4 7.6E-08 2.6E-12 78.8 1.7 59 1-59 235-319 (327)
306 1zd9_A ADP-ribosylation factor 98.4 2.5E-08 8.4E-13 75.3 -1.1 55 1-57 125-184 (188)
307 3dpu_A RAB family protein; roc 98.4 2E-07 6.9E-12 81.8 4.5 58 1-58 151-208 (535)
308 2lkc_A Translation initiation 98.4 6.5E-07 2.2E-11 66.4 6.6 56 1-59 108-172 (178)
309 2qpt_A EH domain-containing pr 98.3 2.4E-07 8.1E-12 81.4 4.0 68 115-185 155-233 (550)
310 1z06_A RAS-related protein RAB 98.3 6.9E-07 2.4E-11 67.2 5.4 42 1-42 128-169 (189)
311 2yv5_A YJEQ protein; hydrolase 98.3 3.1E-07 1.1E-11 74.7 3.6 53 1-53 111-164 (302)
312 1zcb_A G alpha I/13; GTP-bindi 98.3 2.8E-07 9.6E-12 76.7 3.3 60 1-60 269-355 (362)
313 2xtz_A Guanine nucleotide-bind 98.3 3.6E-07 1.2E-11 75.8 3.6 59 1-59 251-346 (354)
314 3iev_A GTP-binding protein ERA 98.3 1.1E-06 3.6E-11 71.7 6.2 57 1-57 123-181 (308)
315 3o47_A ADP-ribosylation factor 98.3 1.7E-07 6E-12 77.1 1.4 56 1-58 267-327 (329)
316 2qm8_A GTPase/ATPase; G protei 98.3 1.6E-06 5.5E-11 71.5 7.2 103 114-227 148-260 (337)
317 2dby_A GTP-binding protein; GD 98.3 2.7E-06 9.1E-11 70.9 8.4 52 170-221 201-255 (368)
318 1t9h_A YLOQ, probable GTPase E 98.2 4.9E-07 1.7E-11 73.4 3.4 92 127-221 76-170 (307)
319 2e87_A Hypothetical protein PH 98.2 1.1E-06 3.6E-11 73.3 5.4 57 1-59 281-337 (357)
320 3r7w_A Gtpase1, GTP-binding pr 98.2 5.4E-07 1.8E-11 73.5 3.2 55 1-56 116-179 (307)
321 3cnl_A YLQF, putative uncharac 98.2 6.4E-08 2.2E-12 77.1 -2.3 105 1-126 47-156 (262)
322 3cnl_A YLQF, putative uncharac 98.2 7.7E-07 2.6E-11 70.8 4.0 84 130-224 14-97 (262)
323 4dhe_A Probable GTP-binding pr 98.2 1.1E-06 3.8E-11 67.8 4.4 59 1-59 145-212 (223)
324 3k53_A Ferrous iron transport 98.2 6.1E-07 2.1E-11 71.8 2.8 55 1-56 110-164 (271)
325 3kkq_A RAS-related protein M-R 98.2 3.2E-06 1.1E-10 63.0 6.0 42 1-42 124-165 (183)
326 2wsm_A Hydrogenase expression/ 98.1 1.6E-06 5.4E-11 66.9 4.4 58 1-58 155-214 (221)
327 3iby_A Ferrous iron transport 98.1 6.2E-07 2.1E-11 71.1 2.0 54 1-55 111-164 (256)
328 3qq5_A Small GTP-binding prote 98.1 4.9E-07 1.7E-11 76.7 0.8 55 1-57 141-195 (423)
329 3c5c_A RAS-like protein 12; GD 98.1 3.3E-06 1.1E-10 63.4 5.0 56 1-59 128-183 (187)
330 3i8s_A Ferrous iron transport 98.1 5.5E-07 1.9E-11 72.2 0.7 55 1-56 113-167 (274)
331 1azs_C GS-alpha; complex (lyas 98.1 1.3E-06 4.3E-11 73.5 2.3 59 1-59 285-386 (402)
332 3lvq_E ARF-GAP with SH3 domain 98.0 6.9E-07 2.4E-11 77.7 -0.4 57 1-59 424-485 (497)
333 1xzp_A Probable tRNA modificat 98.0 9.1E-06 3.1E-10 70.2 6.4 55 1-58 351-405 (482)
334 1m7b_A RND3/RHOE small GTP-bin 98.0 1E-05 3.5E-10 60.4 5.4 55 1-58 112-179 (184)
335 2qnr_A Septin-2, protein NEDD5 98.0 1.7E-06 5.9E-11 70.2 1.1 56 1-57 156-213 (301)
336 3gee_A MNME, tRNA modification 97.9 9.4E-06 3.2E-10 70.0 5.5 54 1-57 344-397 (476)
337 1lnz_A SPO0B-associated GTP-bi 97.9 4.2E-06 1.4E-10 69.1 3.0 53 1-57 275-329 (342)
338 2rcn_A Probable GTPase ENGC; Y 97.9 4.8E-05 1.6E-09 63.0 8.9 84 134-221 127-212 (358)
339 2qag_A Septin-2, protein NEDD5 97.9 1.7E-06 6E-11 72.0 -0.3 58 1-59 175-234 (361)
340 1gwn_A RHO-related GTP-binding 97.8 2E-05 6.9E-10 60.1 5.3 55 1-58 133-200 (205)
341 4fid_A G protein alpha subunit 97.8 5.9E-06 2E-10 67.9 2.3 58 1-58 229-328 (340)
342 1s0u_A EIF-2-gamma, translatio 97.7 3.1E-05 1.1E-09 65.5 5.1 56 2-57 137-197 (408)
343 3geh_A MNME, tRNA modification 97.7 2E-05 6.7E-10 67.7 3.0 52 1-56 331-382 (462)
344 3cb4_D GTP-binding protein LEP 97.6 7.1E-05 2.4E-09 66.2 6.3 55 1-57 124-181 (599)
345 1ega_A Protein (GTP-binding pr 97.6 3.4E-05 1.2E-09 62.6 3.9 56 1-56 117-173 (301)
346 1wf3_A GTP-binding protein; GT 97.6 1.8E-05 6.3E-10 64.1 2.1 52 1-56 118-171 (301)
347 1nrj_B SR-beta, signal recogni 97.5 1.3E-05 4.3E-10 61.6 0.1 44 1-44 121-170 (218)
348 2ywe_A GTP-binding protein LEP 97.5 9.2E-05 3.2E-09 65.4 5.6 55 1-57 126-183 (600)
349 1wb1_A Translation elongation 97.5 6.7E-05 2.3E-09 64.8 3.9 57 1-57 126-188 (482)
350 2qag_C Septin-7; cell cycle, c 97.4 2.4E-05 8E-10 66.3 0.5 55 1-55 168-224 (418)
351 1kk1_A EIF2gamma; initiation o 97.4 6E-05 2.1E-09 63.8 3.0 56 2-57 139-199 (410)
352 3sjy_A Translation initiation 97.4 0.00025 8.4E-09 59.9 6.4 55 2-56 131-190 (403)
353 4a9a_A Ribosome-interacting GT 97.3 0.0024 8.2E-08 53.2 11.6 109 93-202 98-222 (376)
354 1udx_A The GTP-binding protein 97.3 0.00022 7.7E-09 60.3 5.4 56 1-58 270-325 (416)
355 2fh5_B SR-beta, signal recogni 97.3 2.2E-05 7.4E-10 60.0 -0.9 16 1-16 116-131 (214)
356 3p32_A Probable GTPase RV1496/ 97.3 0.00014 4.9E-09 60.3 3.7 56 2-58 219-284 (355)
357 2qtf_A Protein HFLX, GTP-bindi 97.3 0.00032 1.1E-08 58.3 5.5 59 1-59 293-355 (364)
358 1yrb_A ATP(GTP)binding protein 97.3 0.00035 1.2E-08 55.0 5.5 26 32-57 231-256 (262)
359 3p26_A Elongation factor 1 alp 97.2 0.00015 5E-09 62.8 3.0 47 2-48 173-228 (483)
360 2j37_W Signal recognition part 97.1 0.00066 2.3E-08 58.8 6.0 102 113-225 183-310 (504)
361 3izy_P Translation initiation 97.1 0.00012 4E-09 63.9 0.8 55 1-56 105-166 (537)
362 2elf_A Protein translation elo 97.0 0.00036 1.2E-08 58.2 3.4 56 2-58 113-180 (370)
363 2aka_B Dynamin-1; fusion prote 97.0 6.3E-05 2.1E-09 60.6 -1.5 56 1-56 193-251 (299)
364 3t5d_A Septin-7; GTP-binding p 96.9 0.00011 3.9E-09 58.6 -0.5 55 1-55 145-201 (274)
365 3tr5_A RF-3, peptide chain rel 96.9 0.0015 5.1E-08 57.0 6.5 26 33-58 252-277 (528)
366 2xtp_A GTPase IMAP family memb 96.9 0.00033 1.1E-08 55.3 2.1 57 2-59 141-209 (260)
367 1d2e_A Elongation factor TU (E 96.9 0.00039 1.3E-08 58.6 2.6 56 1-56 119-193 (397)
368 1pui_A ENGB, probable GTP-bind 96.9 0.00064 2.2E-08 51.5 3.6 56 1-56 138-197 (210)
369 1g7s_A Translation initiation 96.8 0.0035 1.2E-07 55.5 8.3 26 33-58 193-218 (594)
370 1zun_B Sulfate adenylate trans 96.8 0.00026 8.9E-09 60.4 0.9 50 2-51 159-217 (434)
371 2c78_A Elongation factor TU-A; 96.8 0.00049 1.7E-08 58.1 2.4 44 1-44 128-180 (405)
372 1zo1_I IF2, translation initia 96.8 9.4E-05 3.2E-09 64.0 -2.2 54 1-54 104-163 (501)
373 2dy1_A Elongation factor G; tr 96.7 0.0019 6.6E-08 58.0 5.5 27 32-58 248-274 (665)
374 3lxx_A GTPase IMAP family memb 96.7 0.0026 8.7E-08 49.4 5.6 57 2-58 147-214 (239)
375 1jny_A EF-1-alpha, elongation 96.6 0.00036 1.2E-08 59.5 0.4 49 2-50 146-205 (435)
376 3j2k_7 ERF3, eukaryotic polype 96.6 0.00082 2.8E-08 57.3 2.7 48 3-50 158-217 (439)
377 3izq_1 HBS1P, elongation facto 96.6 0.00074 2.5E-08 60.0 2.2 48 2-49 307-363 (611)
378 1r5b_A Eukaryotic peptide chai 96.5 0.00056 1.9E-08 58.8 0.6 49 1-49 181-243 (467)
379 3avx_A Elongation factor TS, e 96.4 0.0024 8.4E-08 60.2 4.7 56 1-56 412-484 (1289)
380 2p67_A LAO/AO transport system 96.3 0.0028 9.5E-08 52.2 3.9 56 2-57 196-260 (341)
381 1f60_A Elongation factor EEF1A 96.3 0.0015 5.1E-08 56.0 2.1 47 2-48 147-202 (458)
382 2ohf_A Protein OLA1, GTP-bindi 96.2 0.0026 8.9E-08 53.3 3.3 38 115-152 87-131 (396)
383 1ni3_A YCHF GTPase, YCHF GTP-b 96.2 0.077 2.6E-06 44.4 12.2 42 170-211 224-269 (392)
384 3t34_A Dynamin-related protein 96.0 0.00094 3.2E-08 55.4 -0.4 56 1-56 204-259 (360)
385 3dm5_A SRP54, signal recogniti 96.0 0.024 8.2E-07 48.2 8.0 92 114-217 183-280 (443)
386 3mca_A HBS1, elongation factor 95.9 0.0027 9.1E-08 56.3 2.0 44 3-46 318-371 (592)
387 2atx_A Small GTP binding prote 95.6 0.014 4.6E-07 43.4 4.8 35 1-35 123-169 (194)
388 2www_A Methylmalonic aciduria 95.6 0.02 6.7E-07 47.2 6.0 55 2-57 214-278 (349)
389 2rcn_A Probable GTPase ENGC; Y 95.6 0.0087 3E-07 49.4 3.8 49 1-51 161-212 (358)
390 3lxw_A GTPase IMAP family memb 95.6 0.013 4.4E-07 45.8 4.5 58 1-58 140-208 (247)
391 1t9h_A YLOQ, probable GTPase E 95.5 0.0025 8.4E-08 51.6 0.1 51 1-51 118-170 (307)
392 3l82_B F-box only protein 4; T 95.5 0.011 3.9E-07 44.9 3.7 55 1-57 163-222 (227)
393 1jwy_B Dynamin A GTPase domain 95.4 0.013 4.4E-07 47.3 4.3 57 1-57 199-261 (315)
394 1j8m_F SRP54, signal recogniti 95.4 0.044 1.5E-06 44.1 7.3 93 113-218 180-281 (297)
395 2x2e_A Dynamin-1; nitration, h 95.3 0.00035 1.2E-08 57.8 -5.6 54 1-54 198-254 (353)
396 2gco_A H9, RHO-related GTP-bin 95.3 0.018 6E-07 43.2 4.4 35 1-35 130-176 (201)
397 2j69_A Bacterial dynamin-like 95.2 0.013 4.5E-07 52.9 3.7 57 1-57 231-324 (695)
398 3l2o_B F-box only protein 4; s 94.9 0.054 1.9E-06 43.3 6.2 55 1-57 248-307 (312)
399 2dyk_A GTP-binding protein; GT 94.7 0.0057 2E-07 43.7 0.1 33 23-56 127-160 (161)
400 2qm8_A GTPase/ATPase; G protei 94.7 0.039 1.3E-06 45.2 5.0 56 2-57 195-260 (337)
401 3bwd_D RAC-like GTP-binding pr 94.6 0.012 4.2E-07 42.9 1.8 32 1-32 113-154 (182)
402 2v3c_C SRP54, signal recogniti 94.6 0.19 6.4E-06 42.6 9.1 85 113-208 180-272 (432)
403 3kl4_A SRP54, signal recogniti 94.3 0.1 3.5E-06 44.2 6.9 92 113-216 179-278 (433)
404 4dzz_A Plasmid partitioning pr 94.2 0.12 4.2E-06 38.4 6.6 65 114-182 76-142 (206)
405 2gj8_A MNME, tRNA modification 93.5 0.037 1.3E-06 40.3 2.5 27 31-57 139-165 (172)
406 1f6b_A SAR1; gtpases, N-termin 93.1 0.079 2.7E-06 39.5 3.8 26 1-28 127-152 (198)
407 2dby_A GTP-binding protein; GD 92.9 0.046 1.6E-06 45.3 2.4 58 1-58 202-262 (368)
408 3llu_A RAS-related GTP-binding 92.9 0.029 9.8E-07 41.8 1.1 14 1-14 130-143 (196)
409 3ea0_A ATPase, para family; al 92.9 0.97 3.3E-05 34.5 9.9 87 113-207 118-204 (245)
410 1wxq_A GTP-binding protein; st 92.7 0.021 7.2E-07 47.9 0.1 45 1-50 215-262 (397)
411 3cwq_A Para family chromosome 92.4 0.86 2.9E-05 34.2 8.8 66 113-183 67-133 (209)
412 1m2o_B GTP-binding protein SAR 92.0 0.13 4.5E-06 37.9 3.7 24 1-26 125-148 (190)
413 1dar_A EF-G, elongation factor 91.7 0.22 7.6E-06 44.9 5.4 27 32-58 256-282 (691)
414 3end_A Light-independent proto 91.6 2 6.9E-05 34.1 10.6 84 113-205 156-241 (307)
415 2h5e_A Peptide chain release f 89.7 0.16 5.6E-06 44.2 2.6 46 1-48 135-185 (529)
416 3k9g_A PF-32 protein; ssgcid, 89.4 1.2 4.2E-05 34.6 7.3 65 113-181 144-208 (267)
417 2rdo_7 EF-G, elongation factor 89.4 0.67 2.3E-05 41.8 6.4 27 32-58 262-288 (704)
418 1wcv_1 SOJ, segregation protei 89.1 2.2 7.4E-05 33.0 8.6 68 113-183 111-182 (257)
419 3pg5_A Uncharacterized protein 88.5 2.2 7.5E-05 35.0 8.6 123 113-238 153-357 (361)
420 3pqc_A Probable GTP-binding pr 88.3 0.13 4.4E-06 37.7 0.8 14 1-14 134-147 (195)
421 2qag_B Septin-6, protein NEDD5 87.8 0.69 2.4E-05 39.0 5.1 66 140-210 151-218 (427)
422 1hyq_A MIND, cell division inh 87.6 3.6 0.00012 31.7 8.9 82 114-204 111-192 (263)
423 1g3q_A MIND ATPase, cell divis 87.4 4 0.00014 30.8 8.9 66 113-183 111-176 (237)
424 2xex_A Elongation factor G; GT 87.2 1.2 4E-05 40.2 6.5 27 33-59 255-281 (693)
425 3zvr_A Dynamin-1; hydrolase, D 86.6 0.18 6.3E-06 45.8 1.0 55 1-55 218-275 (772)
426 2ph1_A Nucleotide-binding prot 86.1 2 6.8E-05 33.3 6.6 91 112-206 127-224 (262)
427 2b6h_A ADP-ribosylation factor 85.8 0.41 1.4E-05 35.2 2.4 15 1-15 131-145 (192)
428 3q9l_A Septum site-determining 85.8 1.9 6.7E-05 33.1 6.5 67 113-182 113-185 (260)
429 1tq4_A IIGP1, interferon-induc 84.5 8.7 0.0003 32.2 10.1 107 115-227 121-252 (413)
430 2ffh_A Protein (FFH); SRP54, s 84.2 2.7 9.3E-05 35.4 7.0 92 114-217 181-278 (425)
431 3kjh_A CO dehydrogenase/acetyl 84.0 3.2 0.00011 31.5 7.0 64 113-181 131-194 (254)
432 3e70_C DPA, signal recognition 83.3 1.9 6.5E-05 35.0 5.5 92 115-218 213-310 (328)
433 1svi_A GTP-binding protein YSX 83.2 0.41 1.4E-05 35.0 1.4 16 1-16 135-150 (195)
434 1cp2_A CP2, nitrogenase iron p 83.2 14 0.00047 28.4 10.5 87 114-205 116-205 (269)
435 3vqt_A RF-3, peptide chain rel 81.8 2.4 8.2E-05 37.0 5.9 26 33-58 270-295 (548)
436 1jal_A YCHF protein; nucleotid 81.7 1.3 4.4E-05 36.5 3.9 41 1-41 200-240 (363)
437 1ls1_A Signal recognition part 79.2 7.8 0.00027 30.7 7.7 94 113-218 180-279 (295)
438 4gzl_A RAS-related C3 botulinu 79.1 0.37 1.3E-05 35.8 -0.1 15 1-15 135-149 (204)
439 2xxa_A Signal recognition part 77.9 9.7 0.00033 32.1 8.3 84 113-207 183-273 (433)
440 2oze_A ORF delta'; para, walke 77.4 7.8 0.00027 30.4 7.3 68 113-183 154-225 (298)
441 2afh_E Nitrogenase iron protei 77.0 20 0.0007 27.8 9.6 88 113-205 118-208 (289)
442 3th5_A RAS-related C3 botulinu 78.3 0.51 1.8E-05 34.9 0.0 15 1-15 135-149 (204)
443 1h65_A Chloroplast outer envel 75.1 2.4 8.3E-05 33.0 3.6 21 2-22 156-176 (270)
444 3bfv_A CAPA1, CAPB2, membrane 73.2 5.9 0.0002 31.0 5.4 66 113-183 191-257 (271)
445 3def_A T7I23.11 protein; chlor 71.9 3.2 0.00011 32.2 3.5 21 2-22 153-173 (262)
446 1zu4_A FTSY; GTPase, signal re 71.3 24 0.00082 28.3 8.7 93 113-218 191-296 (320)
447 4a9a_A Ribosome-interacting GT 70.1 16 0.00055 30.1 7.5 51 169-226 248-298 (376)
448 3j25_A Tetracycline resistance 69.6 3.6 0.00012 36.6 3.7 27 32-58 213-239 (638)
449 2yhs_A FTSY, cell division pro 68.7 9.7 0.00033 32.8 6.0 93 114-218 376-480 (503)
450 1rj9_A FTSY, signal recognitio 67.7 21 0.00071 28.4 7.6 91 115-217 186-288 (304)
451 1vma_A Cell division protein F 67.5 23 0.00078 28.2 7.7 93 114-218 187-291 (306)
452 2xj4_A MIPZ; replication, cell 67.3 2.7 9.2E-05 33.1 2.2 68 113-183 103-191 (286)
453 1bif_A 6-phosphofructo-2-kinas 64.9 9 0.00031 32.5 5.2 62 116-181 89-160 (469)
454 3sop_A Neuronal-specific septi 64.0 7.6 0.00026 30.4 4.2 67 135-206 109-178 (270)
455 3la6_A Tyrosine-protein kinase 63.4 27 0.00094 27.4 7.4 67 113-183 201-267 (286)
456 3szr_A Interferon-induced GTP- 61.3 14 0.00049 32.5 5.9 66 115-183 148-227 (608)
457 2px0_A Flagellar biosynthesis 57.3 23 0.00077 28.0 5.9 90 114-215 183-278 (296)
458 3cio_A ETK, tyrosine-protein k 56.4 19 0.00066 28.4 5.4 66 113-183 213-279 (299)
459 3ez9_A Para; DNA binding, wing 50.9 38 0.0013 27.8 6.6 66 113-181 247-321 (403)
460 1byi_A Dethiobiotin synthase; 49.8 73 0.0025 23.3 9.5 87 114-206 109-201 (224)
461 1ko7_A HPR kinase/phosphatase; 41.3 29 0.00098 27.8 4.2 50 169-225 79-128 (314)
462 4fn5_A EF-G 1, elongation fact 38.4 56 0.0019 29.3 6.0 27 33-59 266-292 (709)
463 1ni3_A YCHF GTPase, YCHF GTP-b 37.8 47 0.0016 27.5 5.1 40 2-41 226-269 (392)
464 3do6_A Formate--tetrahydrofola 35.9 72 0.0025 27.4 5.8 66 156-226 349-416 (543)
465 2ark_A Flavodoxin; FMN, struct 34.8 1.2E+02 0.0042 21.5 7.1 47 134-180 49-98 (188)
466 1uf3_A Hypothetical protein TT 32.7 99 0.0034 22.4 5.9 63 116-182 9-75 (228)
467 2yvt_A Hypothetical protein AQ 30.9 1.4E+02 0.0048 22.2 6.6 37 116-152 9-47 (260)
468 3u7r_A NADPH-dependent FMN red 30.1 52 0.0018 24.0 3.7 72 131-203 61-136 (190)
469 2og2_A Putative signal recogni 29.6 2.3E+02 0.0077 23.0 8.0 90 116-217 243-344 (359)
470 3hyn_A Putative signal transdu 28.6 85 0.0029 23.0 4.5 59 119-181 60-120 (189)
471 1tq4_A IIGP1, interferon-induc 28.5 1E+02 0.0035 25.7 5.6 56 1-56 176-251 (413)
472 3fkq_A NTRC-like two-domain pr 26.9 63 0.0022 26.2 4.1 48 113-163 259-306 (373)
473 2a5l_A Trp repressor binding p 25.8 1.3E+02 0.0044 21.4 5.4 73 133-205 67-143 (200)
474 2zki_A 199AA long hypothetical 25.8 1.1E+02 0.0037 21.9 4.9 72 134-205 67-142 (199)
475 3ez2_A Plasmid partition prote 25.7 1.1E+02 0.0039 24.8 5.5 34 113-148 244-277 (398)
476 2ale_A SNU13, NHP2/L7AE family 25.3 72 0.0024 21.9 3.5 80 137-232 48-127 (134)
477 2vzf_A NADH-dependent FMN redu 25.0 38 0.0013 24.6 2.2 70 133-204 65-135 (197)
478 2qpt_A EH domain-containing pr 25.0 14 0.00049 32.1 -0.2 15 1-15 219-233 (550)
479 1n0u_A EF-2, elongation factor 24.7 37 0.0012 31.3 2.4 22 1-22 151-173 (842)
480 3b9q_A Chloroplast SRP recepto 24.4 2.6E+02 0.0087 21.9 7.5 90 116-217 186-287 (302)
481 3k1y_A Oxidoreductase; structu 24.4 76 0.0026 23.1 3.8 71 132-203 80-150 (191)
482 3uhf_A Glutamate racemase; str 23.3 1.5E+02 0.0051 23.1 5.4 46 99-146 10-57 (274)
483 4hs4_A Chromate reductase; tri 23.2 96 0.0033 22.6 4.2 72 132-204 68-142 (199)
484 3pzx_A Formate--tetrahydrofola 23.2 59 0.002 28.0 3.2 58 169-228 373-430 (557)
485 2fz5_A Flavodoxin; alpha/beta 22.0 86 0.0029 20.7 3.5 68 134-205 43-112 (137)
486 3fwy_A Light-independent proto 21.7 3E+02 0.01 21.7 11.1 82 114-204 164-247 (314)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.97 E-value=3.5e-31 Score=206.63 Aligned_cols=142 Identities=40% Similarity=0.658 Sum_probs=122.2
Q ss_pred CCCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC
Q psy13390 89 SGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN 168 (245)
Q Consensus 89 ~~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~ 168 (245)
.....|.||+|.++..+.+.+++..+.+.||||+|+++|+.+++.|+++++++++|||++++.||+.+..|+..+.....
T Consensus 37 ~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~ 116 (216)
T 4dkx_A 37 SFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG 116 (216)
T ss_dssp CCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT
T ss_pred CCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred CCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390 169 SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 230 (245)
Q Consensus 169 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 230 (245)
+++|++|||||+|+...+.++.+++..++..+++++++|||++|.||+++|+++++.+....
T Consensus 117 ~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 117 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME 178 (216)
T ss_dssp TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC----
T ss_pred CCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhh
Confidence 88999999999999888899999999999999999999999999999999999999886543
No 2
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.94 E-value=8e-26 Score=174.70 Aligned_cols=142 Identities=49% Similarity=0.754 Sum_probs=122.4
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM 171 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 171 (245)
..+.||+|.++....+.+++..+.+.||||+|++++..++..+++++|++|+|||++++.+++.+..|+..+......++
T Consensus 56 ~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~ 135 (201)
T 2hup_A 56 ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNI 135 (201)
T ss_dssp ---------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTC
T ss_pred CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 46789999999888899999999999999999999999999999999999999999999999999999999988766789
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKIQEG 233 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~ 233 (245)
|+++|+||+|+...+.+..+++..++...++ +++++||++|.|++++|+++.+.+.+.....
T Consensus 136 piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~ 198 (201)
T 2hup_A 136 VQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGP 198 (201)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHTTC-
T ss_pred CEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhcccc
Confidence 9999999999987777888899999999999 8999999999999999999999998765543
No 3
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=1.8e-25 Score=172.73 Aligned_cols=142 Identities=43% Similarity=0.751 Sum_probs=129.4
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM 171 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 171 (245)
..+.||+|.++....+.+++..+.+.||||+|++++..++..+++.+|++++|||++++.+++.+..|+..+......++
T Consensus 53 ~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~ 132 (201)
T 2ew1_A 53 PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKV 132 (201)
T ss_dssp TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC
T ss_pred CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 46789999999989999999999999999999999999999999999999999999999999999999999988766689
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEG 233 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~ 233 (245)
|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|.++.+.+.+.....
T Consensus 133 piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~ 194 (201)
T 2ew1_A 133 ITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQN 194 (201)
T ss_dssp EEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred CEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999877778888889999889999999999999999999999999998766443
No 4
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.94 E-value=2.6e-25 Score=170.26 Aligned_cols=143 Identities=83% Similarity=1.224 Sum_probs=127.1
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN 170 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 170 (245)
...+.+|+|.++....+.+++..+.+.||||+|++.+..++..+++++|++++|||++++.+++.+..|+..+......+
T Consensus 47 ~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~ 126 (191)
T 2a5j_A 47 QPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN 126 (191)
T ss_dssp CC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred CCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 34567899999988899999999999999999999999999999999999999999999999999999999998876678
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEG 233 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~ 233 (245)
+|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.++..++
T Consensus 127 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~ 189 (191)
T 2a5j_A 127 MVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG 189 (191)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999877778888899999999999999999999999999999999998877654
No 5
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.94 E-value=5.5e-25 Score=168.83 Aligned_cols=145 Identities=47% Similarity=0.773 Sum_probs=130.9
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN 170 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 170 (245)
...+.||+|.++....+.+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+......+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 121 (196)
T 3tkl_A 42 TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN 121 (196)
T ss_dssp CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999998877678
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVF 235 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~~~ 235 (245)
+|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|+++.+.+.++......
T Consensus 122 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~~~ 186 (196)
T 3tkl_A 122 VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGAT 186 (196)
T ss_dssp CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC-----
T ss_pred CCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhccccc
Confidence 99999999999988788888899999999999999999999999999999999999887765443
No 6
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.94 E-value=9.6e-26 Score=171.30 Aligned_cols=143 Identities=48% Similarity=0.821 Sum_probs=116.2
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM 171 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 171 (245)
..+.||+|.++....+.+++..+.+.||||+|++.+..++..+++++|++++|||++++.+++.+..|+..+......++
T Consensus 35 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 114 (183)
T 2fu5_C 35 STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114 (183)
T ss_dssp -CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC
T ss_pred CCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence 35678999999888888999999999999999999999999999999999999999999999999999999988765689
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcCC
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGV 234 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~~ 234 (245)
|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+++.+.+.++..+..
T Consensus 115 piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~~~ 177 (183)
T 2fu5_C 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNW 177 (183)
T ss_dssp EEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 999999999998777788889999999999999999999999999999999999988766543
No 7
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.94 E-value=6.4e-25 Score=167.06 Aligned_cols=144 Identities=60% Similarity=0.928 Sum_probs=131.0
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM 171 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 171 (245)
..+.||+|.++....+.+++..+.+.+|||+|++.+...+..+++++|++++|||++++.+++.+..|+..+......++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 116 (186)
T 2bme_A 37 DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI 116 (186)
T ss_dssp TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC
T ss_pred CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence 45678999999888899999999999999999999999999999999999999999999999999999998887766789
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVF 235 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~~~ 235 (245)
|+++|+||+|+...+.+...++..++...+++++++||++|.|++++|+++.+.+.+...+...
T Consensus 117 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~ 180 (186)
T 2bme_A 117 VIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGEL 180 (186)
T ss_dssp EEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSCC-
T ss_pred cEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhhcCC
Confidence 9999999999977677888889999999999999999999999999999999999987766544
No 8
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.93 E-value=1.4e-24 Score=167.59 Aligned_cols=142 Identities=42% Similarity=0.678 Sum_probs=130.3
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM 171 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 171 (245)
..+.||+|.++....+.+++..+.+.||||+|++.+..++..+++++|++++|||++++.+++.+..|+..+......+.
T Consensus 35 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 114 (203)
T 1zbd_A 35 PAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNA 114 (203)
T ss_dssp SCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSC
T ss_pred CCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence 45788999999888889999999999999999999999999999999999999999999999999999999887765679
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEG 233 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~ 233 (245)
|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|+++.+.+.++..++
T Consensus 115 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 115 QVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSES 176 (203)
T ss_dssp EEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999877778888899999999999999999999999999999999998876554
No 9
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.93 E-value=1.1e-24 Score=166.42 Aligned_cols=141 Identities=41% Similarity=0.686 Sum_probs=128.7
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN 170 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 170 (245)
...+.+|+|.++....+.+.+..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+......+
T Consensus 48 ~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 127 (189)
T 2gf9_A 48 TPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN 127 (189)
T ss_dssp CCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred CCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 35678899999988888899999999999999999999999999999999999999999999999999999988876567
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 231 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~ 231 (245)
.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.++..
T Consensus 128 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 188 (189)
T 2gf9_A 128 AQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMN 188 (189)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999998777788888999999999999999999999999999999999987653
No 10
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.93 E-value=6.8e-25 Score=169.28 Aligned_cols=144 Identities=58% Similarity=0.920 Sum_probs=125.2
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM 171 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 171 (245)
..+.||+|.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++.+++.+..|+..+......++
T Consensus 52 ~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 131 (200)
T 2o52_A 52 QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNI 131 (200)
T ss_dssp --------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTC
T ss_pred ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence 45678999999888999999999999999999999999999999999999999999999999999999999887766789
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVF 235 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~~~ 235 (245)
|+++|+||+|+...+.+...++..++...+++++++||++|.|++++|+++.+.+.+...+...
T Consensus 132 piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~~~ 195 (200)
T 2o52_A 132 VVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGEL 195 (200)
T ss_dssp EEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTTSS
T ss_pred cEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999987777888888999999999999999999999999999999999987766543
No 11
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.93 E-value=9.4e-25 Score=169.08 Aligned_cols=141 Identities=44% Similarity=0.764 Sum_probs=129.4
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN 170 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 170 (245)
...+.||+|.++....+.+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+......+
T Consensus 34 ~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~ 113 (206)
T 2bcg_Y 34 TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST 113 (206)
T ss_dssp CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence 34678999999988899999999999999999999999999999999999999999999999999999999998876678
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 231 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~ 231 (245)
.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|+++.+.+.+...
T Consensus 114 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 174 (206)
T 2bcg_Y 114 VLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174 (206)
T ss_dssp CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCC
T ss_pred CCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999998777788888999999999999999999999999999999999977654
No 12
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.93 E-value=1.5e-24 Score=163.81 Aligned_cols=138 Identities=62% Similarity=1.035 Sum_probs=126.4
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN 170 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 170 (245)
...+.+|+|.++....+.+++..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+......+
T Consensus 41 ~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 120 (179)
T 1z0f_A 41 MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN 120 (179)
T ss_dssp CSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred CCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999988877678
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
.|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|+++.+.+.+
T Consensus 121 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 121 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999998777788889999999999999999999999999999999988753
No 13
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.93 E-value=1.7e-24 Score=165.88 Aligned_cols=141 Identities=48% Similarity=0.804 Sum_probs=129.1
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM 171 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 171 (245)
..+.+|+|.++....+.+++..+.+.||||+|++++..++..+++++|++|+|||++++.+++.+..|+..+......++
T Consensus 52 ~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~ 131 (193)
T 2oil_A 52 HDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATI 131 (193)
T ss_dssp SSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTC
T ss_pred CCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 45688999999888899999999999999999999999999999999999999999999999999999998887765689
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 232 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~ 232 (245)
|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.++..+
T Consensus 132 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 192 (193)
T 2oil_A 132 VVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 192 (193)
T ss_dssp EEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999987677788889999999999999999999999999999999999887654
No 14
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.93 E-value=1.5e-24 Score=164.19 Aligned_cols=138 Identities=41% Similarity=0.716 Sum_probs=125.7
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM 171 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 171 (245)
..+.+|+|.++....+.+++..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+.....+++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (181)
T 2efe_B 39 EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNM 118 (181)
T ss_dssp TTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC
T ss_pred CcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 45678999999989999999999999999999999999999999999999999999999999999999999988766689
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 229 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 229 (245)
|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.+.
T Consensus 119 p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 119 VMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp EEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred cEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999987777888899999999999999999999999999999999887554
No 15
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=2.2e-25 Score=170.75 Aligned_cols=142 Identities=39% Similarity=0.694 Sum_probs=129.8
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN 170 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 170 (245)
...+.||+|.++....+.+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+......+
T Consensus 49 ~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 128 (191)
T 3dz8_A 49 TPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN 128 (191)
T ss_dssp CCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred CcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence 35677899999999999999888999999999999999999999999999999999999999999999999998877678
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 232 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~ 232 (245)
+|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.++..+
T Consensus 129 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 190 (191)
T 3dz8_A 129 AQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190 (191)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC--
T ss_pred CCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhccC
Confidence 99999999999987778888999999999999999999999999999999999999876543
No 16
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.8e-24 Score=163.62 Aligned_cols=142 Identities=40% Similarity=0.691 Sum_probs=129.5
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN 170 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 170 (245)
...+.||+|.++....+.+++..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+.... .+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~ 113 (181)
T 3tw8_B 35 SGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DD 113 (181)
T ss_dssp --CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-TT
T ss_pred CCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999988766 57
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEG 233 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~ 233 (245)
+|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.+...+.
T Consensus 114 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 114 VCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN 176 (181)
T ss_dssp SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 999999999999877778888899999999999999999999999999999999998876543
No 17
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.93 E-value=2.1e-24 Score=161.55 Aligned_cols=135 Identities=41% Similarity=0.722 Sum_probs=124.0
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM 171 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 171 (245)
..+.+|+|.++....+.+++..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+.....+++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 112 (170)
T 1r2q_A 33 EFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI 112 (170)
T ss_dssp TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC
T ss_pred CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 45678999999888999999999999999999999999999999999999999999999999999999999888765789
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i 226 (245)
|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+
T Consensus 113 ~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 113 VIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp EEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred cEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999977677788888999999999999999999999999999998765
No 18
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.3e-24 Score=164.38 Aligned_cols=138 Identities=44% Similarity=0.776 Sum_probs=118.5
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM 171 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 171 (245)
..+.||+|.++....+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+......++
T Consensus 38 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 117 (180)
T 2g6b_A 38 GTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDV 117 (180)
T ss_dssp CCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC
T ss_pred CCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 35788999999888888999999999999999999999999999999999999999999999999999999888765689
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 229 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 229 (245)
|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|+++.+.+.+.
T Consensus 118 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 118 ALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp EEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred cEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999987777888888999988999999999999999999999999988643
No 19
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.2e-25 Score=172.78 Aligned_cols=146 Identities=47% Similarity=0.799 Sum_probs=120.1
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM 171 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 171 (245)
..+.||+|.++....+.+++..+.+.||||+|+++|..++..+++.+|++|+|||++++.+++.+..|+..+......++
T Consensus 40 ~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~ 119 (223)
T 3cpj_B 40 MDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNV 119 (223)
T ss_dssp C------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--C
T ss_pred CCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 45678999999888899999999999999999999999999999999999999999999999999999999987765679
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcCCCCC
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDI 237 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~~~~~ 237 (245)
|++||+||+|+...+.+..+++..++...+++++++||++|.|++++|+++.+.+.+.....+..+
T Consensus 120 piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~ 185 (223)
T 3cpj_B 120 AVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDL 185 (223)
T ss_dssp EEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC-------
T ss_pred eEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcccCc
Confidence 999999999998777788888999999999999999999999999999999999987666655443
No 20
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.93 E-value=1e-24 Score=163.44 Aligned_cols=136 Identities=36% Similarity=0.668 Sum_probs=117.9
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM 171 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 171 (245)
..+.||+|.++....+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+......++
T Consensus 33 ~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 112 (170)
T 1z08_A 33 DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI 112 (170)
T ss_dssp SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred cCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence 45678999999888888899999999999999999999999999999999999999999999999999998877655679
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.
T Consensus 113 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 113 CLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp EEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred eEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 99999999999877778888899999999999999999999999999999998875
No 21
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=2.8e-24 Score=160.82 Aligned_cols=135 Identities=39% Similarity=0.722 Sum_probs=123.3
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM 171 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 171 (245)
..+.||+|.++....+.+++..+.+.+|||+|++.+...+..+++++|++++|||++++.+++.+..|+..+......++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 109 (170)
T 1ek0_A 30 ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDI 109 (170)
T ss_dssp TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC
T ss_pred CCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCC
Confidence 45778999999888999999999999999999999999999999999999999999999999999999999888766789
Q ss_pred eEEEEEeCCCCccC---cccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390 172 VIMLIGNKSDLDAR---REVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 172 piivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i 226 (245)
|+++|+||+|+... +.+..++...++...+++++++||++|.|++++|+++.+.+
T Consensus 110 piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 110 IIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp EEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred cEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999755 56788888889988999999999999999999999998765
No 22
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.3e-24 Score=166.55 Aligned_cols=137 Identities=43% Similarity=0.779 Sum_probs=122.6
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM 171 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 171 (245)
..+.||+|.++....+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+......++
T Consensus 53 ~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~ 132 (192)
T 2il1_A 53 EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA 132 (192)
T ss_dssp ----CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC
T ss_pred cCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999998887766689
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREH-GLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
|+++|+||+|+...+.+..++...++... +++++++||++|.|++++|+++.+.+.+
T Consensus 133 piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 133 ELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp EEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999877778888888888774 7889999999999999999999998865
No 23
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.93 E-value=5.5e-24 Score=159.30 Aligned_cols=135 Identities=39% Similarity=0.690 Sum_probs=124.7
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM 171 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 171 (245)
..+.||+|.++....+.+.+..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+.....+..
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~ 112 (170)
T 1z0j_A 33 PNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSI 112 (170)
T ss_dssp TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTS
T ss_pred CCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC
Confidence 45688999999888999999999999999999999999999999999999999999999999999999999988766789
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i 226 (245)
|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+
T Consensus 113 ~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 113 VVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred cEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 9999999999987777888889999999999999999999999999999998865
No 24
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=2.3e-26 Score=197.52 Aligned_cols=215 Identities=15% Similarity=0.042 Sum_probs=135.1
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHHHHhccCccccccccCCcccCCC
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEANGIKIGPQ 79 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (245)
.|++||+||+|+.+.+. ++..+. ..+. .++++||++|.|++++|+.+++.+.+.. ..........+.+.+.
T Consensus 112 ~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~---~~~~~~~~~ki~lvG~ 183 (436)
T 2hjg_A 112 KPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIP---ETKYNEEVIQFCLIGR 183 (436)
T ss_dssp SCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCC---SSCCCTTCEEEEEECS
T ss_pred CCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcCccc---cccccccCcEEEEEcC
Confidence 48999999999865321 112222 3454 6899999999999999999988774211 0001111112222222
Q ss_pred CCCCCCC-----CCCCCC--CCCCCCcceeeEEEEEECCeEEEEEEEcCCCh----------hhhhhhhH-hhccCCcEE
Q psy13390 80 HSPNNPS-----LPSGSS--GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQ----------EAFRSITR-SYYRGAAGA 141 (245)
Q Consensus 80 ~~~~~~~-----l~~~~~--~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~~-~~~~~~d~v 141 (245)
.+..+++ ++.... ...|+++.+.....+.+++. .+.||||||+ ++|..++. .+++.+|++
T Consensus 184 ~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ 261 (436)
T 2hjg_A 184 PNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVV 261 (436)
T ss_dssp TTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEE
T ss_pred CCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEE
Confidence 2221111 222221 22333444444445566665 4899999998 66666655 489999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHH-HH----HHcCCcEEEeccCCCCCHH
Q psy13390 142 LLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEV-FA----REHGLVFMETSAKLATNVE 216 (245)
Q Consensus 142 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~i~ 216 (245)
++|+|++++.++++. .|+..+.. .++|+++|+||+|+.+.+....++... +. ...+++++++||++|.|++
T Consensus 262 llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~ 337 (436)
T 2hjg_A 262 AVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIH 337 (436)
T ss_dssp EEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGG
T ss_pred EEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHH
Confidence 999999998888775 46665543 458999999999997655443333322 22 2236789999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy13390 217 EAFIDTAKEIYEK 229 (245)
Q Consensus 217 ~~~~~i~~~i~~~ 229 (245)
++|+.+.+.+...
T Consensus 338 ~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 338 TLMPAIIKASENH 350 (436)
T ss_dssp GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887653
No 25
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.92 E-value=2e-24 Score=161.76 Aligned_cols=138 Identities=47% Similarity=0.819 Sum_probs=119.1
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM 171 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 171 (245)
..+.||+|.++....+.+++..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+......+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 109 (170)
T 1g16_A 30 PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEA 109 (170)
T ss_dssp C-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC
T ss_pred CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 45678899999888888888899999999999999999999999999999999999999999999999999888766689
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 230 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 230 (245)
|+++|+||+|+ ..+.+..++...++...+++++++||++|.|++++|+++.+.+.++.
T Consensus 110 piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 167 (170)
T 1g16_A 110 QLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167 (170)
T ss_dssp EEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHTC
T ss_pred cEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999 44567778888899889999999999999999999999999987643
No 26
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=2.1e-24 Score=165.40 Aligned_cols=138 Identities=38% Similarity=0.651 Sum_probs=126.1
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN 170 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 170 (245)
...+.||+|.++....+.+++..+.+.||||+|++++...+..+++.+|++++|||++++.+++.+..|+..+......+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~ 128 (192)
T 2fg5_A 49 DHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN 128 (192)
T ss_dssp CTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 34688999999988888888899999999999999999999999999999999999999999999999999998876568
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
+|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.+
T Consensus 129 ~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 129 IVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 9999999999997767788889999999999999999999999999999999987643
No 27
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.92 E-value=3.8e-24 Score=159.76 Aligned_cols=137 Identities=28% Similarity=0.421 Sum_probs=102.7
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN 170 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~ 170 (245)
..+.++.|.++ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+.... ..+
T Consensus 28 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 106 (166)
T 3q72_A 28 GPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD 106 (166)
T ss_dssp --------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---C
T ss_pred cCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 34567788777 4667889999999999999999999999999999999999999999999999999999887754 267
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 229 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 229 (245)
+|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.++
T Consensus 107 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 107 VPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp CCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999988788889999999999999999999999999999999999998764
No 28
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.92 E-value=2.4e-24 Score=163.28 Aligned_cols=140 Identities=27% Similarity=0.405 Sum_probs=124.5
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-C
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-S 169 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~ 169 (245)
...+.||++.++ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .
T Consensus 32 ~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 110 (181)
T 3t5g_A 32 VDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV 110 (181)
T ss_dssp CSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---
T ss_pred CCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 456778999888 77788899999999999999999999999999999999999999999999999999998876643 5
Q ss_pred CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390 170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 231 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~ 231 (245)
++|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+++++.+.....
T Consensus 111 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 111 QIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDG 172 (181)
T ss_dssp -CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC--
T ss_pred CCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 79999999999998778889999999999999999999999999999999999999876543
No 29
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.92 E-value=6.6e-24 Score=159.73 Aligned_cols=138 Identities=30% Similarity=0.392 Sum_probs=115.9
Q ss_pred CCCCCcceeeEEEEEECCeEEEEEEEcCCChhh--hhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390 94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEA--FRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN 170 (245)
Q Consensus 94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~ 170 (245)
..+++|.++....+.+++..+.+.+|||+|++. +..++..+++.+|++++|||++++.+++.+..|+..+.... ..+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~ 111 (175)
T 2nzj_A 32 LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADH 111 (175)
T ss_dssp -CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----
T ss_pred ccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCC
Confidence 456788888888888999999999999999988 56777889999999999999999999999999998887653 257
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 231 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~ 231 (245)
+|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|+++.+.+.....
T Consensus 112 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 112 VPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRR 172 (175)
T ss_dssp CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999998777788888888888899999999999999999999999999876543
No 30
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.92 E-value=1.4e-24 Score=169.28 Aligned_cols=139 Identities=22% Similarity=0.413 Sum_probs=121.3
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHH-HHHHHHHHHhhcCC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH-LTTWLEDARQHSNS 169 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~-~~~~~~~~~~~~~~ 169 (245)
...+.||+|.++ ...+.+++..+.+.||||+|++.|..++..+++++|++|+|||++++.+++. +..|+..+.... +
T Consensus 53 ~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~ 130 (214)
T 3q3j_B 53 PETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-P 130 (214)
T ss_dssp CSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-T
T ss_pred CCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-C
Confidence 456789999887 5667788889999999999999999999999999999999999999999998 688999988876 6
Q ss_pred CCeEEEEEeCCCCccC------------cccCHHHHHHHHHHcCC-cEEEeccCCCCC-HHHHHHHHHHHHHHHHh
Q psy13390 170 NMVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATN-VEEAFIDTAKEIYEKIQ 231 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~~~~i~~~i~~~~~ 231 (245)
++|+++|+||+|+... +.+..+++..++..+++ ++++|||++|.| ++++|+++++.+.....
T Consensus 131 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 131 STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 7999999999999753 56888999999999999 899999999998 99999999999876554
No 31
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.92 E-value=9e-25 Score=170.53 Aligned_cols=143 Identities=34% Similarity=0.619 Sum_probs=126.2
Q ss_pred CCCCCCCcceeeEEEEEECCe----------EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHH
Q psy13390 92 SGSSSGGGVEFGARMITIDGK----------QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~----------~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~ 161 (245)
..+.||+|.++....+.+++. .+.+.||||+|++.+...+..+++.+|++|+|||++++.+++.+..|+.
T Consensus 52 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~ 131 (217)
T 2f7s_A 52 PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMS 131 (217)
T ss_dssp CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHH
T ss_pred cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHH
Confidence 456788998888877777766 7899999999999999999999999999999999999999999999988
Q ss_pred HHHhhcC-CCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcCC
Q psy13390 162 DARQHSN-SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGV 234 (245)
Q Consensus 162 ~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~~ 234 (245)
.+..... .++|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.+......
T Consensus 132 ~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~~ 205 (217)
T 2f7s_A 132 QLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCV 205 (217)
T ss_dssp TCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 8766543 579999999999998777788889999999999999999999999999999999999988665443
No 32
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.92 E-value=4e-24 Score=164.41 Aligned_cols=135 Identities=27% Similarity=0.366 Sum_probs=121.3
Q ss_pred CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhh-hhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCC
Q psy13390 94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRS-ITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNM 171 (245)
Q Consensus 94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~ 171 (245)
+.|+++.++....+.+++..+.+.+|||+|++.+.. ++..+++.+|++++|||++++.+|+.+..|+..+..... .++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 131 (195)
T 3cbq_A 52 HEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDL 131 (195)
T ss_dssp GTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCC
T ss_pred CCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 457788888888888999999999999999988765 788899999999999999999999999999998877653 479
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+++++.+..
T Consensus 132 piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 132 PVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp CEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred CEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 999999999998777788889999999999999999999999999999999998854
No 33
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.92 E-value=4.7e-24 Score=159.39 Aligned_cols=136 Identities=36% Similarity=0.577 Sum_probs=124.7
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM 171 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 171 (245)
..+.||+|.++....+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+.... .+.
T Consensus 32 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~ 110 (168)
T 1z2a_A 32 KDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDI 110 (168)
T ss_dssp CCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSC
T ss_pred CCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCC
Confidence 4578899999998999999999999999999999999999999999999999999999999999999999887766 678
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.+
T Consensus 111 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 111 PTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp CEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred CEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 999999999998767778888899999999999999999999999999999988753
No 34
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=1.6e-23 Score=162.81 Aligned_cols=143 Identities=44% Similarity=0.790 Sum_probs=128.8
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM 171 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 171 (245)
..+.||+|.++....+.+++..+.+.||||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+......++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 126 (213)
T 3cph_A 47 PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEA 126 (213)
T ss_dssp CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCS
T ss_pred cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 46788999999888999999999999999999999999999999999999999999999999999999999888765679
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVF 235 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~~~ 235 (245)
|+++|+||+|+ ..+.+..++...++..++++++++||++|.|++++|+++.+.+.+.......
T Consensus 127 piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~ 189 (213)
T 3cph_A 127 QLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKL 189 (213)
T ss_dssp EEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHHTTSC
T ss_pred CEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999 4456777888888888999999999999999999999999999887765543
No 35
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.92 E-value=8.8e-24 Score=160.42 Aligned_cols=137 Identities=28% Similarity=0.456 Sum_probs=124.4
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NS 169 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~ 169 (245)
...+.||++.++ .....+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+.... ..
T Consensus 44 ~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 122 (183)
T 3kkq_A 44 VDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE 122 (183)
T ss_dssp CSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS
T ss_pred CCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 456778898888 7778889999999999999999999999999999999999999999999999999999886643 36
Q ss_pred CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccC-CCCCHHHHHHHHHHHHHH
Q psy13390 170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK-LATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~~~~i~~~i~~ 228 (245)
++|+++|+||+|+...+.+..+++..++..++++++++||+ +|.|++++|+++.+.+.+
T Consensus 123 ~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 123 SFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp CCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 79999999999998778889999999999999999999999 999999999999998764
No 36
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.92 E-value=1.2e-23 Score=160.75 Aligned_cols=143 Identities=36% Similarity=0.607 Sum_probs=127.0
Q ss_pred CCCCCCCCcceee-EEEEEECCe---------EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHH
Q psy13390 91 SSGSSSGGGVEFG-ARMITIDGK---------QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWL 160 (245)
Q Consensus 91 ~~~~~~tig~~~~-~~~~~~~~~---------~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~ 160 (245)
...+.||+|.++. ...+.+.+. .+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+
T Consensus 37 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 116 (195)
T 3bc1_A 37 NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWI 116 (195)
T ss_dssp CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHH
T ss_pred CcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHH
Confidence 3457789999887 566666665 789999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC-CCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy13390 161 EDARQHSN-SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEG 233 (245)
Q Consensus 161 ~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~ 233 (245)
..+..+.. .++|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.++...+
T Consensus 117 ~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 190 (195)
T 3bc1_A 117 SQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERS 190 (195)
T ss_dssp HHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 99887664 67999999999999876778888899999889999999999999999999999999998876553
No 37
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.92 E-value=4.8e-24 Score=160.96 Aligned_cols=138 Identities=39% Similarity=0.699 Sum_probs=124.9
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN 170 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 170 (245)
...+.||+|.++....+.+++..+.+.+|||+|++.+...+..+++++|++++|||++++.+++.+..|+..+......+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 119 (179)
T 2y8e_A 40 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD 119 (179)
T ss_dssp CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS
T ss_pred CCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 34568899999988899999999999999999999999999999999999999999999999999999999888776568
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
+|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.+
T Consensus 120 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 120 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp SEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred CcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999998777788888888998899999999999999999999999886643
No 38
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.92 E-value=2.6e-24 Score=165.77 Aligned_cols=137 Identities=39% Similarity=0.673 Sum_probs=114.1
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN 170 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 170 (245)
...+.||+|.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++.+++.+..|+..+......+
T Consensus 54 ~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~ 133 (199)
T 2p5s_A 54 RENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET 133 (199)
T ss_dssp C----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---
T ss_pred CccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC
Confidence 34678999999988899999999999999999999999999999999999999999999999999999999888776567
Q ss_pred CeEEEEEeCCCCc------cCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLD------ARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 171 ~piivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
+|+++|+||+|+. ..+.+..+++..++...+++++++||++|.|++++|+++++.+.
T Consensus 134 ~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999996 34567788888999999999999999999999999999998874
No 39
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.92 E-value=9e-24 Score=159.73 Aligned_cols=140 Identities=31% Similarity=0.544 Sum_probs=124.4
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NS 169 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~ 169 (245)
...+.+|++.++. ..+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+.... ..
T Consensus 35 ~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 113 (181)
T 2fn4_A 35 VSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD 113 (181)
T ss_dssp CSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSS
T ss_pred ccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 3457788888875 677888989999999999999999999999999999999999999999999999998885543 36
Q ss_pred CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390 170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 231 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~ 231 (245)
++|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.+...
T Consensus 114 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 114 DFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp CCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 79999999999998777788888999999999999999999999999999999999977554
No 40
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=8.8e-24 Score=164.27 Aligned_cols=136 Identities=26% Similarity=0.349 Sum_probs=117.7
Q ss_pred CCCCcceeeEEEEEECCeEEEEEEEcCCChhh-hhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCe
Q psy13390 95 SSGGGVEFGARMITIDGKQIKLQIWDTAGQEA-FRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSNMV 172 (245)
Q Consensus 95 ~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p 172 (245)
.+++|.++....+.+++..+.+.+|||+|++. +..+++.+++.+|++++|||++++.+|+.+..|+..+.... ..++|
T Consensus 68 ~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p 147 (211)
T 2g3y_A 68 CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP 147 (211)
T ss_dssp ---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC
T ss_pred CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 46688888888888999999999999999887 56677788999999999999999999999999988876543 25799
Q ss_pred EEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 230 (245)
Q Consensus 173 iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 230 (245)
+++|+||+|+...+.+..+++..++..+++++++|||++|.||+++|+++++.+....
T Consensus 148 iilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 148 IILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred EEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999876778888888888889999999999999999999999999986543
No 41
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.92 E-value=2.9e-24 Score=166.17 Aligned_cols=141 Identities=25% Similarity=0.473 Sum_probs=107.7
Q ss_pred CCCCCCCcceeeEEEEEECCe--EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-
Q psy13390 92 SGSSSGGGVEFGARMITIDGK--QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN- 168 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~- 168 (245)
..+.||+|.++....+.+++. .+.+.||||+|++.+..++..+++++|++++|||++++.+++.+..|+..+.....
T Consensus 49 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 128 (208)
T 2yc2_C 49 KDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPD 128 (208)
T ss_dssp ------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSC
T ss_pred CCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcc
Confidence 467899998888888888887 89999999999999999999999999999999999999999999999999988765
Q ss_pred --CCCeEEEEEeCCCCcc-CcccCHHHHHHHHHHcCCcEEEeccCC-CCCHHHHHHHHHHHHHHHHhc
Q psy13390 169 --SNMVIMLIGNKSDLDA-RREVKKEEGEVFAREHGLVFMETSAKL-ATNVEEAFIDTAKEIYEKIQE 232 (245)
Q Consensus 169 --~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~~i~~~~~~i~~~i~~~~~~ 232 (245)
.++|+++|+||+|+.. .+.+..+++..++..++++++++||++ |.|++++|+++.+.+.+...+
T Consensus 129 ~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~~ 196 (208)
T 2yc2_C 129 RERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED 196 (208)
T ss_dssp TTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHHHH
T ss_pred cccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 5899999999999987 677888999999999999999999999 999999999999998776543
No 42
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=8.1e-26 Score=195.12 Aligned_cols=216 Identities=16% Similarity=0.063 Sum_probs=134.0
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHHHHhccCccccccccCCcccCCC
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEANGIKIGPQ 79 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (245)
.|++||+||+|+...+ +....+. ..+. ..+++||++|.|+.++|+.+.+.+.... ..........+.+.+.
T Consensus 132 ~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~---~~~~~~~~~ki~ivG~ 203 (456)
T 4dcu_A 132 KPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIP---ETKYNEEVIQFCLIGR 203 (456)
T ss_dssp SCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSC---SSCCCTTCEEEEEECS
T ss_pred CCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccchHHHHHHHHhhccccc---ccccccccceeEEecC
Confidence 4899999999986432 1111111 2333 4679999999999999999987653211 0011111112222222
Q ss_pred CCCCCCC-----CCCCCC--CCCCCCcceeeEEEEEECCeEEEEEEEcCCC----------hhhhhhhhHh-hccCCcEE
Q psy13390 80 HSPNNPS-----LPSGSS--GSSSGGGVEFGARMITIDGKQIKLQIWDTAG----------QEAFRSITRS-YYRGAAGA 141 (245)
Q Consensus 80 ~~~~~~~-----l~~~~~--~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~~~~-~~~~~d~v 141 (245)
.+..+++ .+.... ...|+++.+.....+.+++. .+.|||||| +++|..++.. +++.+|++
T Consensus 204 ~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ 281 (456)
T 4dcu_A 204 PNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVV 281 (456)
T ss_dssp TTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEE
T ss_pred CCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEE
Confidence 2211111 112222 23334444444455666665 699999999 6888777664 88999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHc-----CCcEEEeccCCCCCHH
Q psy13390 142 LLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREH-----GLVFMETSAKLATNVE 216 (245)
Q Consensus 142 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~ 216 (245)
++|+|++++.+.++ ..|+..+.. .++|+++|+||+|+...+....++....+... +++++++||++|.|++
T Consensus 282 llviD~~~~~~~~~-~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 357 (456)
T 4dcu_A 282 AVVLDGEEGIIEQD-KRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIH 357 (456)
T ss_dssp EEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGG
T ss_pred EEEEeCCCCcCHHH-HHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHH
Confidence 99999998655333 344444443 45899999999999876666666666665544 5789999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy13390 217 EAFIDTAKEIYEKI 230 (245)
Q Consensus 217 ~~~~~i~~~i~~~~ 230 (245)
++|+++.+.+....
T Consensus 358 ~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 358 TLMPAIIKASENHS 371 (456)
T ss_dssp GHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998875543
No 43
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.92 E-value=1.1e-23 Score=160.96 Aligned_cols=136 Identities=38% Similarity=0.707 Sum_probs=121.5
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhh-hhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFR-SITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NS 169 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~ 169 (245)
..+.||+|.++....+.+++..+.+.||||+|++++. .++..+++.+|++++|||++++.+++.+..|+..+.... ..
T Consensus 47 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~ 126 (189)
T 1z06_A 47 DRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN 126 (189)
T ss_dssp SSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCS
T ss_pred CCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence 4568899999988899999999999999999999998 889999999999999999999999999999999988765 36
Q ss_pred CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCC---CCHHHHHHHHHHHHH
Q psy13390 170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLA---TNVEEAFIDTAKEIY 227 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~~~~~~i~~~i~ 227 (245)
++|+++|+||+|+...+.+..++...++...+++++++||++| .|++++|+++++.+.
T Consensus 127 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 127 DIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred CCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 7999999999999877778888899999999999999999999 999999999988764
No 44
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.92 E-value=4.8e-24 Score=162.78 Aligned_cols=135 Identities=27% Similarity=0.412 Sum_probs=117.5
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-- 168 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-- 168 (245)
...+.||+|.++ ...+.+++..+.+.||||+|++.++.+ ..+++.+|++++|||++++.+++.+..|+..+.....
T Consensus 47 ~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~ 124 (187)
T 3c5c_A 47 ISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKET 124 (187)
T ss_dssp CSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhcc
Confidence 456788999887 556778999999999999999988875 6799999999999999999999999999998877631
Q ss_pred -CCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEecc-CCCCCHHHHHHHHHHHHH
Q psy13390 169 -SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSA-KLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 169 -~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~~~~~~i~~~i~ 227 (245)
.++|+++|+||+|+...+.+..+++..++..++++++++|| ++|.|++++|+++++.+.
T Consensus 125 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 125 QRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp CCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 57999999999999877788889999999999999999999 899999999999998875
No 45
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.92 E-value=4.9e-24 Score=160.93 Aligned_cols=136 Identities=35% Similarity=0.512 Sum_probs=120.3
Q ss_pred CCCCCCcceeeEEEEEECC-eEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--C
Q psy13390 93 GSSSGGGVEFGARMITIDG-KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN--S 169 (245)
Q Consensus 93 ~~~~tig~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~ 169 (245)
.+.||+|.++....+.+.+ ..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+..... .
T Consensus 34 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 113 (178)
T 2hxs_A 34 QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESE 113 (178)
T ss_dssp HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHT
T ss_pred CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccC
Confidence 4578999998888888876 678999999999999999999999999999999999999999999999988876432 2
Q ss_pred CCe-EEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 170 NMV-IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 170 ~~p-iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
+.| +++|+||+|+...+.+..++...++..++++++++||++|.|++++|+++.+.+.+
T Consensus 114 ~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 114 TQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp CCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 345 89999999998767788888999999999999999999999999999999988754
No 46
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.92 E-value=1.2e-23 Score=162.13 Aligned_cols=140 Identities=24% Similarity=0.439 Sum_probs=119.0
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQHSNS 169 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~ 169 (245)
...+.||++..+ ...+.+++..+.+.+|||+|+++|..++..+++++|++++|||++++.+++.+. .|+..+..+. .
T Consensus 46 ~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~ 123 (201)
T 2q3h_A 46 PTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-P 123 (201)
T ss_dssp -----CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-S
T ss_pred CCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C
Confidence 356778888666 556778899999999999999999999999999999999999999999999987 6998888765 5
Q ss_pred CCeEEEEEeCCCCcc------------CcccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390 170 NMVIMLIGNKSDLDA------------RREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKIQE 232 (245)
Q Consensus 170 ~~piivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~ 232 (245)
++|+++|+||+|+.. .+.+..+++..++..+++ +++++||++|.|++++|+++++.+.+....
T Consensus 124 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 199 (201)
T 2q3h_A 124 KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDT 199 (201)
T ss_dssp SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhccccc
Confidence 799999999999965 255778888889988887 899999999999999999999999876654
No 47
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.92 E-value=7.1e-24 Score=158.72 Aligned_cols=136 Identities=26% Similarity=0.370 Sum_probs=112.2
Q ss_pred CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhh-hhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCC
Q psy13390 94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRS-ITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNM 171 (245)
Q Consensus 94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~ 171 (245)
+.++.+.++....+.+++..+.+.+|||+|++.+.. ++..+++.+|++++|||++++.+++.+..|+..+..... .++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 110 (169)
T 3q85_A 31 HEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDL 110 (169)
T ss_dssp -------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCC
T ss_pred ccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCC
Confidence 345556777788888999999999999999998876 777889999999999999999999999999999887664 479
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 229 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 229 (245)
|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++.+.+..+
T Consensus 111 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 111 PVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp CEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 9999999999987788899999999999999999999999999999999999988653
No 48
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.92 E-value=3.1e-23 Score=156.37 Aligned_cols=136 Identities=34% Similarity=0.625 Sum_probs=119.1
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN--- 168 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--- 168 (245)
..+.||+|.++....+.+++..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+.....
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 113 (177)
T 1wms_A 34 TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKE 113 (177)
T ss_dssp C----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSC
T ss_pred CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccc
Confidence 45789999999888999999999999999999999999999999999999999999999999999999988876543
Q ss_pred -CCCeEEEEEeCCCCccCcccCHHHHHHHHH-HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 169 -SNMVIMLIGNKSDLDARREVKKEEGEVFAR-EHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 169 -~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
.++|+++|+||+|+. .+.+..++...++. ..+++++++||++|.|++++|+++++.+.+
T Consensus 114 ~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 114 PESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 578999999999997 45677888888887 567899999999999999999999998864
No 49
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=2.7e-23 Score=159.11 Aligned_cols=139 Identities=45% Similarity=0.793 Sum_probs=125.3
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-C
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-S 169 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~ 169 (245)
...+.||+|.++....+.+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .
T Consensus 41 ~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 120 (195)
T 1x3s_A 41 DPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRN 120 (195)
T ss_dssp CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCS
T ss_pred CccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcC
Confidence 356789999999989999999999999999999999999999999999999999999999999999999998877653 5
Q ss_pred CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390 170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 230 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 230 (245)
++|+++|+||+|+. .+.+..++...++...+++++++||++|.|++++|+++.+.+.+..
T Consensus 121 ~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 121 DIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp CCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred CCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence 79999999999994 3567788888999999999999999999999999999999987543
No 50
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.91 E-value=3.2e-23 Score=160.14 Aligned_cols=140 Identities=31% Similarity=0.538 Sum_probs=124.9
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-C
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-S 169 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~ 169 (245)
...+.||++..+ ...+.+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .
T Consensus 40 ~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 118 (206)
T 2bov_A 40 VEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE 118 (206)
T ss_dssp CTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 356778888776 45677888889999999999999999999999999999999999999999999999999887653 5
Q ss_pred CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390 170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 231 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~ 231 (245)
++|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+++++.+.+...
T Consensus 119 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 180 (206)
T 2bov_A 119 NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKM 180 (206)
T ss_dssp CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHccc
Confidence 79999999999998777788889999999899999999999999999999999999987543
No 51
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.91 E-value=1.5e-24 Score=166.42 Aligned_cols=137 Identities=17% Similarity=0.239 Sum_probs=118.2
Q ss_pred CCCCCCcceeeEEEE-EECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCC------ChhhHHHHHHHHHHHHh
Q psy13390 93 GSSSGGGVEFGARMI-TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDIT------RRETFNHLTTWLEDARQ 165 (245)
Q Consensus 93 ~~~~tig~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~------~~~s~~~~~~~~~~~~~ 165 (245)
.+.||+|.++....+ .+++..+.+.+|||+|++++..+++.+++++|++++|||++ +..+++.+..|+..+..
T Consensus 52 ~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~ 131 (198)
T 3t1o_A 52 EDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL 131 (198)
T ss_dssp SSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc
Confidence 466888888877766 67888999999999999999999999999999999999999 55677777788877743
Q ss_pred hcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390 166 HSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKIQE 232 (245)
Q Consensus 166 ~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~ 232 (245)
. ..++|+++|+||+|+.. .+..+++..++...++ +++++||++|.|++++|+++.+.+.++..+
T Consensus 132 ~-~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 132 T-LDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp C-TTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred c-cCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 2 26899999999999964 3678888999988998 999999999999999999999999887654
No 52
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.91 E-value=4.1e-23 Score=156.90 Aligned_cols=141 Identities=32% Similarity=0.542 Sum_probs=125.0
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-C
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-S 169 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~ 169 (245)
...+.+|++.++ ...+.+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .
T Consensus 44 ~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 122 (187)
T 2a9k_A 44 VEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE 122 (187)
T ss_dssp CCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred CCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence 345678887776 45567888889999999999999999999999999999999999999999999999998877654 4
Q ss_pred CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390 170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 232 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~ 232 (245)
++|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|+++.+.+.+.+.+
T Consensus 123 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 185 (187)
T 2a9k_A 123 NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 185 (187)
T ss_dssp TCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 799999999999987777888889999999999999999999999999999999999876644
No 53
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.91 E-value=2e-23 Score=157.68 Aligned_cols=133 Identities=14% Similarity=0.302 Sum_probs=113.1
Q ss_pred CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc---CCC
Q psy13390 94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS---NSN 170 (245)
Q Consensus 94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~---~~~ 170 (245)
+.||+|..+ ...+.+++..+.+.+|||+|+++ ..+++++|++++|||++++.+++.+..|+..+.... ..+
T Consensus 35 ~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~ 108 (178)
T 2iwr_A 35 LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGG 108 (178)
T ss_dssp CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCC
T ss_pred cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 678888666 67778899999999999999986 458889999999999999999999999766655443 257
Q ss_pred CeEEEEEeCCCCc--cCcccCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390 171 MVIMLIGNKSDLD--ARREVKKEEGEVFAREH-GLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 232 (245)
Q Consensus 171 ~piivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~ 232 (245)
+|+++|+||+|+. ..+.+..+++..++... +++++++||++|.|++++|+++++.+.+....
T Consensus 109 ~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 109 LALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQ 173 (178)
T ss_dssp CEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999994 45667888888888776 68999999999999999999999999876654
No 54
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.91 E-value=3.9e-23 Score=158.47 Aligned_cols=137 Identities=23% Similarity=0.467 Sum_probs=121.5
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQHSNS 169 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~ 169 (245)
...+.||+|.++. ..+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+ ..|+..+.... .
T Consensus 49 ~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~ 126 (194)
T 3reg_A 49 PTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-D 126 (194)
T ss_dssp CSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-T
T ss_pred CCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C
Confidence 4567889988875 4677899999999999999999999999999999999999999999999997 67888887665 6
Q ss_pred CCeEEEEEeCCCCccC--cccCHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390 170 NMVIMLIGNKSDLDAR--REVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDTAKEIYEK 229 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~~i~~~ 229 (245)
++|+++|+||+|+... +.+..+++..++..++++ ++++||++|.|++++|+++.+.+.+.
T Consensus 127 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 127 TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 7999999999999643 667889999999999998 99999999999999999999988653
No 55
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.91 E-value=3.4e-23 Score=157.68 Aligned_cols=133 Identities=20% Similarity=0.362 Sum_probs=115.3
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SN 170 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~ 170 (245)
..+.|| +.++ ...+.+++..+.+.+|||+|++.+. +++++|++++|||++++.+|+.+..|+..+..... .+
T Consensus 47 ~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 119 (184)
T 3ihw_A 47 QEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASE 119 (184)
T ss_dssp CCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGG
T ss_pred CCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence 446677 4455 4778889999999999999998876 88899999999999999999999999999987753 57
Q ss_pred CeEEEEEeCCCCc--cCcccCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390 171 MVIMLIGNKSDLD--ARREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIYEKIQ 231 (245)
Q Consensus 171 ~piivv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~ 231 (245)
+|+++|+||+|+. ..+.+..+++..++...+ ++++++||++|.|++++|+++++.+.+.+.
T Consensus 120 ~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 120 VPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRK 183 (184)
T ss_dssp SCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred CCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999994 456788899999999887 899999999999999999999999987653
No 56
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=3e-23 Score=159.06 Aligned_cols=135 Identities=24% Similarity=0.413 Sum_probs=118.8
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQHSNS 169 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~ 169 (245)
...+.||+|.++ ...+.+++..+.+.+|||+|++++..++..+++++|++++|||++++.+++.+. .|+..+..+. +
T Consensus 44 ~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~ 121 (194)
T 2atx_A 44 PEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-P 121 (194)
T ss_dssp CCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-T
T ss_pred CCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C
Confidence 346778888776 456677888899999999999999999999999999999999999999999987 7988888765 4
Q ss_pred CCeEEEEEeCCCCccC------------cccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 170 NMVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
++|+++|+||+|+... +.+..+++..++..+++ +++++||++|.|++++|+++.+.++
T Consensus 122 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 122 NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 7999999999999653 46778889999988887 8999999999999999999998875
No 57
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=5.2e-24 Score=164.37 Aligned_cols=141 Identities=27% Similarity=0.470 Sum_probs=119.6
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-C
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-S 169 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~ 169 (245)
...+.||++.++ ...+.+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .
T Consensus 50 ~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 128 (201)
T 3oes_A 50 SEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKT 128 (201)
T ss_dssp CSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----
T ss_pred CCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 356778888887 66677778889999999999999999999999999999999999999999999999999877643 5
Q ss_pred CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390 170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 232 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~ 232 (245)
++|+++|+||+|+...+.+...++..++...+++++++||++|.|++++|+++.+.+.+....
T Consensus 129 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 129 RVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENS 191 (201)
T ss_dssp CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC---
T ss_pred CCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 789999999999987788888999999999999999999999999999999999999775544
No 58
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.91 E-value=3e-23 Score=154.75 Aligned_cols=136 Identities=32% Similarity=0.555 Sum_probs=118.1
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SN 170 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~ 170 (245)
..+.||++.++ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .+
T Consensus 31 ~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 109 (168)
T 1u8z_A 31 EDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 109 (168)
T ss_dssp SCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred CCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 45667887766 45567888899999999999999999999999999999999999999999999999998887654 47
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
+|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|+++.+.+.+
T Consensus 110 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 110 VPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp SCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999998777788889999999899999999999999999999999998753
No 59
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.91 E-value=3.1e-23 Score=154.72 Aligned_cols=134 Identities=34% Similarity=0.530 Sum_probs=118.7
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN 170 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~ 170 (245)
..+.||++.++ ...+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+.... ..+
T Consensus 30 ~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 108 (167)
T 1c1y_A 30 EKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED 108 (167)
T ss_dssp CSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSC
T ss_pred CCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCC
Confidence 45678888776 4566778889999999999999999999999999999999999999999999999998887754 257
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREH-GLVFMETSAKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~i 226 (245)
+|+++|+||+|+.+.+.+..++...++... +++++++||++|.|++++|+++.+.+
T Consensus 109 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 109 VPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 999999999999877778888888888887 78999999999999999999999876
No 60
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.91 E-value=2.3e-23 Score=157.58 Aligned_cols=139 Identities=32% Similarity=0.577 Sum_probs=109.1
Q ss_pred CCCCCCCcceeeEEEEEEC-CeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--
Q psy13390 92 SGSSSGGGVEFGARMITID-GKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-- 168 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-- 168 (245)
..+.||+|.++....+.++ +..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+.....
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 114 (182)
T 1ky3_A 35 QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVN 114 (182)
T ss_dssp TTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCS
T ss_pred cccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhccc
Confidence 4577899999888888777 6678999999999999999999999999999999999999999999999988877643
Q ss_pred --CCCeEEEEEeCCCCc-cCcccCHHHHHHHHH-HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390 169 --SNMVIMLIGNKSDLD-ARREVKKEEGEVFAR-EHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 230 (245)
Q Consensus 169 --~~~piivv~nK~Dl~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 230 (245)
.++|+++|+||+|+. ..+.+..++...++. ..+++++++||++|.|++++|+++.+.+.+..
T Consensus 115 ~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 115 SPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp CTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 578999999999995 334567788888887 56788999999999999999999999997754
No 61
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.91 E-value=4.9e-23 Score=153.45 Aligned_cols=136 Identities=31% Similarity=0.492 Sum_probs=120.5
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SN 170 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~ 170 (245)
..+.||++..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .+
T Consensus 30 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 108 (167)
T 1kao_A 30 EKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK 108 (167)
T ss_dssp SCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSC
T ss_pred ccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 35567777555 67778899999999999999999999999999999999999999999999999999888877643 57
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.+
T Consensus 109 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 109 VPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp CCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 9999999999998777788888899998899999999999999999999999988743
No 62
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.91 E-value=1.1e-22 Score=156.75 Aligned_cols=136 Identities=37% Similarity=0.657 Sum_probs=117.5
Q ss_pred CCCCCCCcceeeEEEEEECCeE-------------------------------------EEEEEEcCCChhhhhhhhHhh
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQ-------------------------------------IKLQIWDTAGQEAFRSITRSY 134 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~-------------------------------------~~~~l~Dt~G~~~~~~~~~~~ 134 (245)
..+.||+|.++....+.+++.. +.+.||||+|++.+...+..+
T Consensus 34 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 113 (208)
T 3clv_A 34 ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLY 113 (208)
T ss_dssp SSCCCCCSCEEEEEEEETTC-------------------------------CCCTTTCEEEEEEEECTTGGGCTTTHHHH
T ss_pred CCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCccceeEEEEEECCCcHHHHHHHHHH
Confidence 3566777777777666666544 889999999999999999999
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCC
Q psy13390 135 YRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATN 214 (245)
Q Consensus 135 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 214 (245)
++.+|++++|||++++.+++.+..|+..+..... .|+++|+||+| ...+.+..++...++...+++++++||++|.|
T Consensus 114 ~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 190 (208)
T 3clv_A 114 YRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTN 190 (208)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999999999999999999999998887653 89999999999 45567788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy13390 215 VEEAFIDTAKEIYEKI 230 (245)
Q Consensus 215 i~~~~~~i~~~i~~~~ 230 (245)
++++|+++.+.+.+..
T Consensus 191 i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 191 IKNIFYMLAEEIYKNI 206 (208)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999987654
No 63
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.91 E-value=2.2e-23 Score=158.61 Aligned_cols=135 Identities=24% Similarity=0.446 Sum_probs=117.8
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQHSNSN 170 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~~ 170 (245)
..+.||++.++ ...+.+++..+.+.+|||+|++.|..++..+++++|++++|||++++.+++.+ ..|+..+.... ++
T Consensus 34 ~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~ 111 (184)
T 1m7b_A 34 ENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PN 111 (184)
T ss_dssp SSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TT
T ss_pred CCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CC
Confidence 45778888777 45667788899999999999999999999999999999999999999999998 67988887765 57
Q ss_pred CeEEEEEeCCCCccC------------cccCHHHHHHHHHHcC-CcEEEeccC-CCCCHHHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHG-LVFMETSAK-LATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 171 ~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~~~~~i~~~i~~ 228 (245)
.|+++|+||+|+... +.++.+++..++..++ ++++++||+ +|.|++++|+++++.+++
T Consensus 112 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 112 TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 999999999999642 5578888999998887 689999999 689999999999998764
No 64
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=7.1e-23 Score=157.30 Aligned_cols=138 Identities=32% Similarity=0.438 Sum_probs=122.1
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-C
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-S 169 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~ 169 (245)
...+.||++.++ ...+.+++..+.+.+|||+|++. ...+..+++.+|++++|||++++.+++.+..|+..+..... .
T Consensus 54 ~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~ 131 (196)
T 2atv_A 54 IWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPK 131 (196)
T ss_dssp CSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS
T ss_pred CcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCC
Confidence 345778888776 55677889999999999999988 77888999999999999999999999999999988877543 5
Q ss_pred CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCC-CHHHHHHHHHHHHHHHH
Q psy13390 170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT-NVEEAFIDTAKEIYEKI 230 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~i~~~i~~~~ 230 (245)
++|+++|+||+|+...+.+..+++..++...+++++++||++|. |++++|+++++.+.++.
T Consensus 132 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 132 NVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 79999999999998777788889999999899999999999999 99999999999987654
No 65
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.91 E-value=1.2e-23 Score=163.57 Aligned_cols=139 Identities=25% Similarity=0.510 Sum_probs=117.1
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQHSNSN 170 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~ 170 (245)
..+.||+|..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++++|||++++.+++.+. .|+..+..+. ++
T Consensus 36 ~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~ 113 (212)
T 2j0v_A 36 TDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PN 113 (212)
T ss_dssp SSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TT
T ss_pred ccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CC
Confidence 45778888776 456678888899999999999999999999999999999999999999999987 7998888775 47
Q ss_pred CeEEEEEeCCCCccCcc--------cCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390 171 MVIMLIGNKSDLDARRE--------VKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKIQE 232 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~ 232 (245)
+|+++|+||+|+...+. +..+++..++..+++ +++++||++|.|++++|+++++.+.+....
T Consensus 114 ~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 114 VPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp CCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC---
T ss_pred CCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhhhh
Confidence 99999999999865443 367888888888886 899999999999999999999998765443
No 66
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.91 E-value=5.6e-23 Score=158.97 Aligned_cols=139 Identities=33% Similarity=0.613 Sum_probs=123.0
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN--- 168 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--- 168 (245)
..+.||+|.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+.....
T Consensus 35 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 114 (207)
T 1vg8_A 35 NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 114 (207)
T ss_dssp SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSS
T ss_pred CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhccccc
Confidence 45778999999888888899899999999999999999999999999999999999999999999999988876542
Q ss_pred -CCCeEEEEEeCCCCccCcccCHHHHHHHHH-HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390 169 -SNMVIMLIGNKSDLDARREVKKEEGEVFAR-EHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 231 (245)
Q Consensus 169 -~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~ 231 (245)
.++|+++|+||+|+. .+.+..++...++. ..+++++++||++|.|++++|+++.+.+.+...
T Consensus 115 ~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 115 PENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET 178 (207)
T ss_dssp GGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 468999999999997 45567777888877 667899999999999999999999999987654
No 67
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.90 E-value=1.4e-22 Score=156.32 Aligned_cols=136 Identities=27% Similarity=0.457 Sum_probs=118.4
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQHSNS 169 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~ 169 (245)
...+.||++.++. ..+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+ ..|+..+.... +
T Consensus 51 ~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~ 128 (201)
T 2gco_A 51 PEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-P 128 (201)
T ss_dssp CSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-T
T ss_pred CcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C
Confidence 3457888888875 4467889999999999999999999999999999999999999999999998 57888877765 5
Q ss_pred CCeEEEEEeCCCCccC------------cccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 170 NMVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
++|+++|+||+|+... +.+..+++..++...++ +++++||++|.|++++|+++.+.+++
T Consensus 129 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 129 NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 7999999999999654 45777888889988888 79999999999999999999988753
No 68
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.90 E-value=3.8e-23 Score=160.15 Aligned_cols=135 Identities=24% Similarity=0.446 Sum_probs=118.3
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQHSNSN 170 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~~ 170 (245)
..+.||++.++ ...+.+++..+.+.||||+|++.|..++..+++++|++++|||++++.+++.+ ..|+..+.... .+
T Consensus 55 ~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~ 132 (205)
T 1gwn_A 55 ENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PN 132 (205)
T ss_dssp SSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TT
T ss_pred CCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CC
Confidence 45788998887 45667788899999999999999999999999999999999999999999998 67988887765 57
Q ss_pred CeEEEEEeCCCCccC------------cccCHHHHHHHHHHcC-CcEEEeccC-CCCCHHHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHG-LVFMETSAK-LATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 171 ~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~~~~~i~~~i~~ 228 (245)
+|+++|+||+|+... +.+..+++..++..++ +++++|||+ +|.|++++|+++++.+++
T Consensus 133 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 133 TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 999999999999642 4578888899998887 689999999 689999999999998865
No 69
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=6.7e-24 Score=182.31 Aligned_cols=219 Identities=18% Similarity=0.083 Sum_probs=131.3
Q ss_pred CeEEEEeecCCCccCCCCCHHHH-HHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHHHHhcc-CccccccccCCcccC
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEG-EVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKIQE-GVFDITNEANGIKIG 77 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~-~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (245)
.|++||+||+|+... . ..++ ..++ ..+. .++++||++|.|++++|+.+++.+.+.... ...........+.+.
T Consensus 111 ~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaiv 186 (439)
T 1mky_A 111 VDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIV 186 (439)
T ss_dssp CCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEE
T ss_pred CCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEE
Confidence 489999999998532 1 1222 3343 4565 689999999999999999999988643211 000001111122222
Q ss_pred CCCCCCCCC-----CCCCCCCCCCCCcce--eeEEEEEECCeEEEEEEEcCCChhhhhhh-----------h-HhhccCC
Q psy13390 78 PQHSPNNPS-----LPSGSSGSSSGGGVE--FGARMITIDGKQIKLQIWDTAGQEAFRSI-----------T-RSYYRGA 138 (245)
Q Consensus 78 ~~~~~~~~~-----l~~~~~~~~~tig~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~-~~~~~~~ 138 (245)
+.+...+++ .+.......+..|++ .....+.+++. .+.+|||+|++++... . ..+++.+
T Consensus 187 G~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~a 264 (439)
T 1mky_A 187 GRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKA 264 (439)
T ss_dssp CSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhC
Confidence 222211111 122222233333433 33445666775 5789999998543322 1 3478899
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHH-----HHHHcCCcEEEeccCCCC
Q psy13390 139 AGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEV-----FAREHGLVFMETSAKLAT 213 (245)
Q Consensus 139 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 213 (245)
|++++|+|++++.+.++. .+...+.. .++|+++|+||||+...+..+.++... +....+++++++||++|.
T Consensus 265 d~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 340 (439)
T 1mky_A 265 DVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGW 340 (439)
T ss_dssp SEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTB
T ss_pred CEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCC
Confidence 999999999987666552 22222222 468999999999987544433333322 222235789999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy13390 214 NVEEAFIDTAKEIYEK 229 (245)
Q Consensus 214 ~i~~~~~~i~~~i~~~ 229 (245)
|++++|+.+.+.+...
T Consensus 341 gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 341 NIDRMIDAMNLAYASY 356 (439)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999998876543
No 70
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.90 E-value=1.4e-22 Score=155.31 Aligned_cols=136 Identities=26% Similarity=0.360 Sum_probs=116.2
Q ss_pred CCCCcceeeEEEEEECCeEEEEEEEcCCChhh-hhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCe
Q psy13390 95 SSGGGVEFGARMITIDGKQIKLQIWDTAGQEA-FRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSNMV 172 (245)
Q Consensus 95 ~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p 172 (245)
.+++|.++....+.+++..+.+.+|||+|.+. ++.+++.+++.+|++++|||++++.||+.+..|+..+.... ..++|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~p 116 (192)
T 2cjw_A 37 XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP 116 (192)
T ss_dssp -GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCe
Confidence 35678888788888999999999999999876 56677889999999999999999999999999988777653 25799
Q ss_pred EEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 230 (245)
Q Consensus 173 iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 230 (245)
+++|+||+|+...+.+..+++..++..+++++++|||++|.||+++|+++++.+....
T Consensus 117 iilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 117 IILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred EEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence 9999999999776778888888888888999999999999999999999999986544
No 71
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.90 E-value=1.9e-22 Score=153.18 Aligned_cols=135 Identities=24% Similarity=0.464 Sum_probs=117.6
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQHSNSN 170 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~ 170 (245)
..+.||++..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+. .|+..+.... .+
T Consensus 32 ~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~ 109 (186)
T 1mh1_A 32 GEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PN 109 (186)
T ss_dssp SSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TT
T ss_pred CCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC-CC
Confidence 45677887666 456678899999999999999999999999999999999999999999999987 6888887765 47
Q ss_pred CeEEEEEeCCCCccC------------cccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 171 ~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
+|+++|+||+|+... +.+..+++..++...++ +++++||++|.|++++|+++.+.+.+
T Consensus 110 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 110 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred CCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 999999999998643 45677888889988887 89999999999999999999988753
No 72
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.90 E-value=7.8e-23 Score=159.38 Aligned_cols=138 Identities=26% Similarity=0.513 Sum_probs=103.3
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQHSNS 169 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~ 169 (245)
...+.||++..+ ...+.+++..+.+.||||+|++.+..++..+++++|++++|||++++.+++.+. .|+..+.... .
T Consensus 60 ~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~ 137 (214)
T 2j1l_A 60 PESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-K 137 (214)
T ss_dssp ----CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC-S
T ss_pred CCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-C
Confidence 345778887666 556778899999999999999999999999999999999999999999999987 6888887765 5
Q ss_pred CCeEEEEEeCCCCccCc------------ccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390 170 NMVIMLIGNKSDLDARR------------EVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKI 230 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 230 (245)
++|+++|+||+|+...+ .+..+++..++...++ +++++||++|.|++++|+++.+.+.+..
T Consensus 138 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 138 KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 79999999999996542 5677888899988887 8999999999999999999999987643
No 73
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.90 E-value=3.6e-22 Score=151.97 Aligned_cols=139 Identities=29% Similarity=0.492 Sum_probs=117.7
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SN 170 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~ 170 (245)
..+.+|.+. .....+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .+
T Consensus 31 ~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 109 (189)
T 4dsu_A 31 DEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED 109 (189)
T ss_dssp CCCCTTCCE-EEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSC
T ss_pred CCCCCCchh-eEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 345566654 3456677889999999999999999999999999999999999999999999999999998877543 57
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 232 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~ 232 (245)
.|+++|+||+|+.. +....+....++...+++++++||++|.|++++|+++.+.+.+....
T Consensus 110 ~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 170 (189)
T 4dsu_A 110 VPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170 (189)
T ss_dssp CCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 99999999999963 55677888999999999999999999999999999999999766543
No 74
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1.9e-22 Score=156.30 Aligned_cols=135 Identities=25% Similarity=0.475 Sum_probs=112.7
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQHSNSN 170 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~~ 170 (245)
..+.||++.++.. .+.+++..+.+.||||+|++.+..++..+++++|++++|||++++.+++.+ ..|+..+.... ++
T Consensus 52 ~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~ 129 (207)
T 2fv8_A 52 EVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PN 129 (207)
T ss_dssp -------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TT
T ss_pred CcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CC
Confidence 4567888887754 467889899999999999999999999999999999999999999999998 56888887765 57
Q ss_pred CeEEEEEeCCCCccC------------cccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 171 ~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
+|+++|+||+|+... +.+..+++..++...++ +++++||++|.|++++|+++.+.+..
T Consensus 130 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 130 VPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp CCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred CCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999654 45677788888888887 89999999999999999999998864
No 75
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.90 E-value=6e-23 Score=160.28 Aligned_cols=140 Identities=28% Similarity=0.430 Sum_probs=121.1
Q ss_pred CCCCCCCCcceeeEEEEEEC-CeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC
Q psy13390 91 SSGSSSGGGVEFGARMITID-GKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS 169 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~ 169 (245)
...+.+|+|.++....+... +..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+......
T Consensus 37 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 116 (218)
T 4djt_A 37 EKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN 116 (218)
T ss_dssp TCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCS
T ss_pred CCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC
Confidence 35568899988877776654 44589999999999999999999999999999999999999999999999999887766
Q ss_pred CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390 170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 230 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 230 (245)
++|+++|+||+|+...+.+..+....++...+++++++||++|.|++++|+++.+.+.+..
T Consensus 117 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 117 EAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp SSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred CCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 7999999999999877778888888888889999999999999999999999999986644
No 76
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.89 E-value=4.4e-23 Score=161.46 Aligned_cols=137 Identities=31% Similarity=0.528 Sum_probs=122.0
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN 170 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 170 (245)
...+.||+|.++......+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+.... .+
T Consensus 41 ~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~ 119 (221)
T 3gj0_A 41 EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-EN 119 (221)
T ss_dssp TCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TT
T ss_pred CCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999998876 57
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 230 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 230 (245)
+|+++|+||+|+.+... . .+...++...+++++++||++|.|++++|+++.+.+....
T Consensus 120 ~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 120 IPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp CCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred CCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 99999999999965432 2 2455677778999999999999999999999999987654
No 77
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.89 E-value=1.1e-24 Score=168.02 Aligned_cols=136 Identities=49% Similarity=0.800 Sum_probs=113.4
Q ss_pred CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe
Q psy13390 93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172 (245)
Q Consensus 93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 172 (245)
.+.||+|.++....+.+++..+.+.||||+|++.+..++..+++++|++++|||++++.+++.+..|+..+......++|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 140 (199)
T 3l0i_B 61 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN 140 (199)
T ss_dssp HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSE
T ss_pred CcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 45688899998899999999999999999999999999999999999999999999999999999999999877666899
Q ss_pred EEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 173 iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
+++|+||+|+...+.+..++...++..++++++++||++|.|++++|+++.+.+.+
T Consensus 141 ~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 141 KLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp EEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred EEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999998777666677788888899999999999999999999999877643
No 78
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=3.1e-22 Score=149.91 Aligned_cols=134 Identities=33% Similarity=0.425 Sum_probs=116.3
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--C
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN--S 169 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~ 169 (245)
..+.||++.++ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .
T Consensus 30 ~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~ 108 (172)
T 2erx_A 30 ESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE 108 (172)
T ss_dssp SSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---
T ss_pred CCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCC
Confidence 35667887666 34566788889999999999999999999999999999999999999999998888887776542 4
Q ss_pred CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390 170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i 226 (245)
++|+++|+||+|+...+.+...+...++...+++++++||++|.|++++|+++.+.+
T Consensus 109 ~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 109 SIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred CCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 789999999999987777888888888888899999999999999999999998755
No 79
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.89 E-value=4.7e-23 Score=156.08 Aligned_cols=134 Identities=23% Similarity=0.499 Sum_probs=100.9
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQHSNSN 170 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~ 170 (245)
..+.||+|..+. ..+.+++..+.+.+|||+|++++..++..+++++|++++|||++++.+++.+. .|+..+.... .+
T Consensus 35 ~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~ 112 (182)
T 3bwd_D 35 TDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PG 112 (182)
T ss_dssp ----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TT
T ss_pred CCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CC
Confidence 345667765553 23445677788999999999999999999999999999999999999999987 6988887765 47
Q ss_pred CeEEEEEeCCCCccCcc----------cCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARRE----------VKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
+|+++|+||+|+...+. +..+++..++..+++ +++++||++|.|++++|+++.+.++
T Consensus 113 ~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 113 VPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp CCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred CCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999865443 467888889888886 8999999999999999999998764
No 80
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.89 E-value=1.1e-21 Score=149.79 Aligned_cols=137 Identities=30% Similarity=0.504 Sum_probs=109.3
Q ss_pred CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCC
Q psy13390 93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNM 171 (245)
Q Consensus 93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~ 171 (245)
.+.+|++..+ ...+.+++..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+..... .++
T Consensus 49 ~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 127 (190)
T 3con_A 49 EYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDV 127 (190)
T ss_dssp CCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred ccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4567776655 45677888899999999999999999999999999999999999999999999999988877653 579
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 231 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~ 231 (245)
|+++|+||+|+.. +.+..++...++...+++++++||++|.|++++|+++.+.+.+.+.
T Consensus 128 p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 128 PMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRM 186 (190)
T ss_dssp CEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999865 5567888899999999999999999999999999999999876543
No 81
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.89 E-value=8.9e-23 Score=157.89 Aligned_cols=136 Identities=23% Similarity=0.448 Sum_probs=115.1
Q ss_pred CCCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhc
Q psy13390 89 SGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQHS 167 (245)
Q Consensus 89 ~~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~ 167 (245)
.....+.+|++..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+. .|+..+....
T Consensus 54 ~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 132 (204)
T 4gzl_A 54 AFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 132 (204)
T ss_dssp CCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC
T ss_pred CCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC
Confidence 33456778886554 566778888999999999999999999999999999999999999999999987 7888887776
Q ss_pred CCCCeEEEEEeCCCCccCc------------ccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q psy13390 168 NSNMVIMLIGNKSDLDARR------------EVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 168 ~~~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i 226 (245)
.++|+++|+||+|+...+ .+..+++..++...++ +++++||++|.|++++|+++.+.+
T Consensus 133 -~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 133 -PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp -SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred -CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 679999999999986543 2677888889988886 499999999999999999998754
No 82
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.88 E-value=2.2e-21 Score=144.17 Aligned_cols=133 Identities=32% Similarity=0.549 Sum_probs=116.2
Q ss_pred CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCC
Q psy13390 93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNM 171 (245)
Q Consensus 93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~ 171 (245)
.+.+|++..+ ...+.+++..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+..... .++
T Consensus 31 ~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 109 (166)
T 2ce2_X 31 ECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDV 109 (166)
T ss_dssp CCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred ccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3456666554 55667888899999999999999999999999999999999999999999999999998877653 479
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
|+++|+||+|+.. +....++...++..++++++++||++|.|++++|+++.+.+.
T Consensus 110 p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 110 PMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp CEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred cEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 9999999999865 456778888899889999999999999999999999998874
No 83
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.88 E-value=4e-22 Score=153.12 Aligned_cols=136 Identities=14% Similarity=0.267 Sum_probs=106.2
Q ss_pred CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC----
Q psy13390 93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN---- 168 (245)
Q Consensus 93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~---- 168 (245)
.+.||+|..+.. +++..+.+.||||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+.....
T Consensus 46 ~~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~ 121 (199)
T 4bas_A 46 HITATVGYNVET----FEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRE 121 (199)
T ss_dssp CCCCCSSEEEEE----EEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSB
T ss_pred ccccccceeEEE----EEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhc
Confidence 568899855432 334557899999999999999999999999999999999999999999999888866521
Q ss_pred ----CCCeEEEEEeCCCCccCcc---cCHHHHHH-HHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390 169 ----SNMVIMLIGNKSDLDARRE---VKKEEGEV-FAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 232 (245)
Q Consensus 169 ----~~~piivv~nK~Dl~~~~~---~~~~~~~~-~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~ 232 (245)
.++|+++|+||+|+..... +....... ++...+++++++||++|.||+++|+++.+.+.+...+
T Consensus 122 ~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 122 LPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp CTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred ccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence 2689999999999975422 11111111 1144677899999999999999999999999876544
No 84
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=2e-21 Score=149.27 Aligned_cols=135 Identities=28% Similarity=0.361 Sum_probs=116.6
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--C
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN--S 169 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~ 169 (245)
..+.||++.++. ..+.+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .
T Consensus 35 ~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 113 (199)
T 2gf0_A 35 DTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE 113 (199)
T ss_dssp CTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGG
T ss_pred CcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCC
Confidence 456788886664 4567788899999999999999999999999999999999999999999998888877766542 4
Q ss_pred CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
++|+++|+||+|+.. +.+..++...++..++++++++||++|.|++++|+++.+.+.+
T Consensus 114 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 114 DIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp GSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred CCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 689999999999965 5567788888888899999999999999999999999987754
No 85
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.88 E-value=5.5e-22 Score=152.73 Aligned_cols=128 Identities=18% Similarity=0.188 Sum_probs=100.1
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN 170 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~ 170 (245)
..+.||+|.+. ..+.+++ +.+.+|||+|++.++.++..+++++|++++|||++++.+++.+..|+..+.... ..+
T Consensus 51 ~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~ 126 (198)
T 1f6b_A 51 GQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIAN 126 (198)
T ss_dssp ----CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred CccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCC
Confidence 35778888774 3455665 789999999999999999999999999999999999999999999998887653 257
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHH-----------------cCCcEEEeccCCCCCHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFARE-----------------HGLVFMETSAKLATNVEEAFIDTAKE 225 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 225 (245)
+|+++|+||+|+.. .+..++...++.. .++++++|||++|.|++++|+++.+.
T Consensus 127 ~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 127 VPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp SCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred CcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999964 4566666666542 34579999999999999999999764
No 86
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.87 E-value=1.5e-22 Score=150.71 Aligned_cols=129 Identities=21% Similarity=0.309 Sum_probs=98.7
Q ss_pred CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCe
Q psy13390 94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSNMV 172 (245)
Q Consensus 94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p 172 (245)
+.||+|.. ...+.+ ..+.+.+|||+|++.++.++..+++++|++++|||++++.+++....|+..+.... ..+.|
T Consensus 28 ~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 103 (164)
T 1r8s_A 28 TIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 103 (164)
T ss_dssp CCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE
T ss_pred ccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe
Confidence 35677733 233333 45789999999999999999999999999999999999999999999988876542 25799
Q ss_pred EEEEEeCCCCccCcccCHHHHHHH-----HHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 173 IMLIGNKSDLDARREVKKEEGEVF-----AREHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 173 iivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
+++|+||+|+.... ..++.... +...+++++++||++|.|++++|+++.+.+.+
T Consensus 104 iilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 104 LLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp EEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 99999999996532 22222211 11234679999999999999999999988754
No 87
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.87 E-value=1.5e-20 Score=144.65 Aligned_cols=143 Identities=53% Similarity=0.834 Sum_probs=125.4
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM 171 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 171 (245)
..+.||+|.++....+.+++..+.+.+|||+|++.++.++..+++.++++++|||+++..+++.+..|+..+......+.
T Consensus 32 ~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 111 (199)
T 2f9l_A 32 LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 111 (199)
T ss_dssp C---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC
T ss_pred CCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence 35678999999888899999999999999999999999999999999999999999999999998889888766554678
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcCC
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGV 234 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~~ 234 (245)
|+++++||+|+...+....++++.++...++.++++||+++.|++++|+++.+.+.+......
T Consensus 112 ~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~~~~~ 174 (199)
T 2f9l_A 112 VIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 174 (199)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHTSC
T ss_pred eEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 999999999997766777888899999999999999999999999999999999987665544
No 88
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.87 E-value=1.8e-21 Score=148.84 Aligned_cols=128 Identities=17% Similarity=0.192 Sum_probs=105.1
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN 170 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~ 170 (245)
..+.||+|.+. ..+.+++ +.+.+|||+|++.++.++..+++++|++++|||++++.+++.+..|+..+.... ..+
T Consensus 49 ~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 124 (190)
T 1m2o_B 49 ATLQPTWHPTS--EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKD 124 (190)
T ss_dssp CCCCCCCSCEE--EEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred CccccCCCCCe--EEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcC
Confidence 35778888764 4455565 789999999999999999999999999999999999999999999998887643 257
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHH------------cCCcEEEeccCCCCCHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFARE------------HGLVFMETSAKLATNVEEAFIDTAKE 225 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 225 (245)
.|+++|+||+|+.. .+..++....... .+++++++||++|.|++++|+++.+.
T Consensus 125 ~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 125 VPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred CCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 99999999999964 4556666554432 34679999999999999999999764
No 89
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.87 E-value=4.2e-22 Score=149.20 Aligned_cols=130 Identities=19% Similarity=0.308 Sum_probs=102.4
Q ss_pred CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCC
Q psy13390 93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNM 171 (245)
Q Consensus 93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~ 171 (245)
.+.||+|.++ ..+.++ ...+.+|||+|++.+...+..+++++|++++|||++++.++.....|+..+..... .++
T Consensus 34 ~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 109 (171)
T 1upt_A 34 TTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKA 109 (171)
T ss_dssp CCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTC
T ss_pred CcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCC
Confidence 4567887554 344444 46799999999999999999999999999999999999999999988887766432 579
Q ss_pred eEEEEEeCCCCccCcccCHHHHHH-----HHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEV-----FAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
|+++|+||+|+.... ...+... .+...+++++++||++|.|++++|+++.+.+.+
T Consensus 110 piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 110 ILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp EEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 999999999996542 1222221 122345689999999999999999999988754
No 90
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.86 E-value=2.3e-22 Score=153.05 Aligned_cols=136 Identities=20% Similarity=0.354 Sum_probs=102.9
Q ss_pred CCCCCCCcceeeEEEEEE---CCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhc
Q psy13390 92 SGSSSGGGVEFGARMITI---DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR-ETFNHLTTWLEDARQHS 167 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~-~s~~~~~~~~~~~~~~~ 167 (245)
..+.||+|.++....+.+ ++..+.+.+|||+|+++|..+++.++++++++++|||++++ .+++.+..|+..+....
T Consensus 31 ~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~ 110 (184)
T 2zej_A 31 GMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA 110 (184)
T ss_dssp ------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC
T ss_pred CCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC
Confidence 456789999887766554 34677899999999999999999999999999999999987 57999999999887665
Q ss_pred CCCCeEEEEEeCCCCccCcccC---HHHHHHHHHHcCCc----EEEeccCCCC-CHHHHHHHHHHHHHH
Q psy13390 168 NSNMVIMLIGNKSDLDARREVK---KEEGEVFAREHGLV----FMETSAKLAT-NVEEAFIDTAKEIYE 228 (245)
Q Consensus 168 ~~~~piivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~~~-~i~~~~~~i~~~i~~ 228 (245)
++.|+++|+||+|+...+.+. .+....++..++++ ++++||++|. +++++++.+.+.+.+
T Consensus 111 -~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 111 -SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp -TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred -CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 578999999999996544322 23344555556776 9999999997 999999999887755
No 91
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.86 E-value=2.2e-21 Score=147.26 Aligned_cols=132 Identities=22% Similarity=0.287 Sum_probs=101.9
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN 170 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~ 170 (245)
..+.||+|.++ ..+.++ .+.+.+|||+|++.++..+..+++++|++++|||++++.+++.+..|+..+.... ..+
T Consensus 42 ~~~~~t~g~~~--~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 117 (181)
T 1fzq_A 42 SHITPTQGFNI--KSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSC 117 (181)
T ss_dssp EEEEEETTEEE--EEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTT
T ss_pred CcccCcCCeEE--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcC
Confidence 35678888543 344454 4679999999999999999999999999999999999999999999888775542 257
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFA-----REHGLVFMETSAKLATNVEEAFIDTAKEIYEK 229 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 229 (245)
.|+++|+||+|+.+... .++..... ...+++++++||++|.|++++|+++.+.+.++
T Consensus 118 ~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 118 VPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp CCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC---
T ss_pred CCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHhc
Confidence 89999999999975432 22222211 12346799999999999999999999887553
No 92
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.86 E-value=1.6e-20 Score=155.40 Aligned_cols=137 Identities=23% Similarity=0.440 Sum_probs=119.8
Q ss_pred CCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcC
Q psy13390 90 GSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQHSN 168 (245)
Q Consensus 90 ~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~ 168 (245)
....+.+|++..+ ...+.+++..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+. .|+..+....
T Consensus 180 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~- 257 (332)
T 2wkq_A 180 FPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC- 257 (332)
T ss_dssp CCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-
T ss_pred CCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC-
Confidence 3456788888766 556778899999999999999999999999999999999999999999999987 6888887765
Q ss_pred CCCeEEEEEeCCCCccC------------cccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 169 SNMVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 169 ~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
.++|+++|+||+|+... +.+..+++..++...++ +++++||++|.|++++|+++.+.++.
T Consensus 258 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 258 PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 47999999999998643 46778888999999987 89999999999999999999988754
No 93
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=143.54 Aligned_cols=131 Identities=16% Similarity=0.230 Sum_probs=104.6
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN--- 168 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--- 168 (245)
..+.||+|.. ...+.+++ +.+.+|||+|++.+...+..+++++|++++|||++++.+++.+..|+..+.....
T Consensus 49 ~~~~~t~~~~--~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 124 (190)
T 2h57_A 49 QNILPTIGFS--IEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH 124 (190)
T ss_dssp SSCCCCSSEE--EEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTT
T ss_pred CCcCCcccee--EEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcc
Confidence 4467888743 34444444 6799999999999999999999999999999999999999999999888876543
Q ss_pred CCCeEEEEEeCCCCccCcccCHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 169 SNMVIMLIGNKSDLDARREVKKEEGEVFAR-----EHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 169 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
.++|+++|+||+|+... ...++...... ..+++++++||++|.|++++|+++.+.+.+
T Consensus 125 ~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 125 RRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp SCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred CCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 47999999999999643 34455555442 235689999999999999999999988744
No 94
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.85 E-value=1.1e-20 Score=143.63 Aligned_cols=132 Identities=20% Similarity=0.264 Sum_probs=105.3
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NS 169 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~ 169 (245)
...+.||+|.+. ..+.++ .+.+.+|||+|++++...+..+++++|++++|||++++.+++.+..|+..+.... ..
T Consensus 43 ~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 118 (186)
T 1ksh_A 43 VDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLA 118 (186)
T ss_dssp CSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGT
T ss_pred CCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcC
Confidence 556788988554 344444 4679999999999999999999999999999999999999999999988876653 25
Q ss_pred CCeEEEEEeCCCCccCcccCHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 170 NMVIMLIGNKSDLDARREVKKEEGEVFA-----REHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
++|+++|+||+|+.... ..++..... ...+++++++||++|.|++++|+++.+.+.+
T Consensus 119 ~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 119 GATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp TCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 79999999999996543 223332221 1245679999999999999999999998754
No 95
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.85 E-value=8e-22 Score=150.46 Aligned_cols=131 Identities=19% Similarity=0.297 Sum_probs=102.8
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN 170 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~ 170 (245)
..+.||+|.++.. +. ...+.+.||||+|++.+..++..+++++|++++|||++++.+++.+..|+..+.... ..+
T Consensus 49 ~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~ 124 (188)
T 1zd9_A 49 EDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG 124 (188)
T ss_dssp CSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred CccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCC
Confidence 4577899987753 23 345779999999999999999999999999999999999999999999988876642 257
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFA-----REHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
+|+++|+||+|+.... ..++..... ...+++++++||++|.|++++|+++.+.+.+
T Consensus 125 ~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 125 IPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred CCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999996432 222222211 1234579999999999999999999987644
No 96
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.85 E-value=9.7e-22 Score=163.43 Aligned_cols=133 Identities=16% Similarity=0.213 Sum_probs=108.4
Q ss_pred CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHH
Q psy13390 94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITR----------RETFNHLTTWLEDA 163 (245)
Q Consensus 94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~~ 163 (245)
+.||+|.+. ..+.++ .+.+++|||+|++.++..|..||++++++|||||+++ ..++++...|+..+
T Consensus 177 ~~~T~Gi~~--~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i 252 (353)
T 1cip_A 177 RVKTTGIVE--THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI 252 (353)
T ss_dssp CCCCCSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHH
T ss_pred cCceeceEE--EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHH
Confidence 456777553 333443 5789999999999999999999999999999999998 56788888899888
Q ss_pred HhhcC-CCCeEEEEEeCCCCccCc---------------ccCHHHHHHHHH-----------HcCCcEEEeccCCCCCHH
Q psy13390 164 RQHSN-SNMVIMLIGNKSDLDARR---------------EVKKEEGEVFAR-----------EHGLVFMETSAKLATNVE 216 (245)
Q Consensus 164 ~~~~~-~~~piivv~nK~Dl~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~ 216 (245)
..... .++|++|++||+|+...+ .++.+++..++. ..++.+++|||++|.||+
T Consensus 253 ~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~ 332 (353)
T 1cip_A 253 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQ 332 (353)
T ss_dssp HTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHH
T ss_pred HcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHH
Confidence 76532 679999999999985332 356778888776 356779999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy13390 217 EAFIDTAKEIYEKI 230 (245)
Q Consensus 217 ~~~~~i~~~i~~~~ 230 (245)
++|+++.+.+....
T Consensus 333 ~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 333 FVFDAVTDVIIKNN 346 (353)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987643
No 97
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.85 E-value=8.9e-22 Score=151.23 Aligned_cols=129 Identities=22% Similarity=0.297 Sum_probs=102.5
Q ss_pred CCCcceeeEEEEE--EC-CeEEEEEEEcCCChhhhhhhh---HhhccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhc
Q psy13390 96 SGGGVEFGARMIT--ID-GKQIKLQIWDTAGQEAFRSIT---RSYYRGAAGALLVYDITRR--ETFNHLTTWLEDARQHS 167 (245)
Q Consensus 96 ~tig~~~~~~~~~--~~-~~~~~~~l~Dt~G~~~~~~~~---~~~~~~~d~vi~v~d~~~~--~s~~~~~~~~~~~~~~~ 167 (245)
+|+|.++...... +. +..+.+.+|||+|+++|.... ..+++++|++|+|||++++ .+++.+..|+..+....
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~ 127 (196)
T 3llu_A 48 ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN 127 (196)
T ss_dssp GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC
T ss_pred ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC
Confidence 5555555444433 33 667889999999999987766 8999999999999999997 67777777887775444
Q ss_pred CCCCeEEEEEeCCCCcc-------CcccCHHHHHHHHH----HcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390 168 NSNMVIMLIGNKSDLDA-------RREVKKEEGEVFAR----EHGLVFMETSAKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 168 ~~~~piivv~nK~Dl~~-------~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~i~~~i 226 (245)
.++|+++|+||+|+.. .+.+..+....++. ..+++++++||++ .||+++|..+++.+
T Consensus 128 -~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 128 -PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp -TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred -CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 6799999999999754 23455566677777 6778899999999 99999999999865
No 98
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.85 E-value=1.4e-21 Score=149.70 Aligned_cols=129 Identities=20% Similarity=0.294 Sum_probs=95.3
Q ss_pred CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCC
Q psy13390 93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSNM 171 (245)
Q Consensus 93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~ 171 (245)
.+.||+|.. ...+.+. .+.+.+|||+|++.++.++..+++++|++++|||++++.+++.+..|+..+.... ..++
T Consensus 56 ~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~ 131 (192)
T 2b6h_A 56 TTIPTIGFN--VETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDA 131 (192)
T ss_dssp EEEEETTEE--EEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred ccCCcCcee--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCC
Confidence 356788733 3334443 4789999999999999999999999999999999999999999999988876543 2579
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHH-----HHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVF-----AREHGLVFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
|+++|+||+|+.+.. ..++.... +...+++++++||++|.|++++|+++.+.+.
T Consensus 132 piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 132 VLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp EEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred eEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 999999999996532 22222211 1123457999999999999999999998763
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.76 E-value=5.1e-23 Score=159.11 Aligned_cols=134 Identities=24% Similarity=0.475 Sum_probs=112.4
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQHSNS 169 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~ 169 (245)
...+.||++..+ ...+.+++..+.+.+|||+|++++...+..+++++|++++|||++++.+++.+. .|+..+.... .
T Consensus 56 ~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~-~ 133 (204)
T 3th5_A 56 PGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-P 133 (204)
Confidence 345678887666 455667788889999999999999999999999999999999999999999887 7887776654 4
Q ss_pred CCeEEEEEeCCCCccCc------------ccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q psy13390 170 NMVIMLIGNKSDLDARR------------EVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i 226 (245)
++|+++|+||+|+...+ .+..++...++...++ +++++||++|.|++++|+++.+.+
T Consensus 134 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 134 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 79999999999996532 4555667777877887 899999999999999999998765
No 100
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.9e-20 Score=142.57 Aligned_cols=130 Identities=21% Similarity=0.270 Sum_probs=100.6
Q ss_pred CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCC
Q psy13390 93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSNM 171 (245)
Q Consensus 93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~ 171 (245)
.+.||+|.+. ..+.+++ +.+.+|||+|++++..++..+++++|++++|||++++.+++.+..|+..+.... ..+.
T Consensus 43 ~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 118 (187)
T 1zj6_A 43 HTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKA 118 (187)
T ss_dssp EEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTC
T ss_pred cCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCC
Confidence 5678888554 3444544 789999999999999999999999999999999999999999999998887653 2579
Q ss_pred eEEEEEeCCCCccCcccCHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEVFAR-----EHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
|+++|+||+|+... ...++...... ..+++++++||++|.|++++|+++++.+..
T Consensus 119 piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 119 GLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp EEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred eEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999643 23344433322 245689999999999999999999987744
No 101
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.85 E-value=1.5e-21 Score=148.96 Aligned_cols=131 Identities=18% Similarity=0.291 Sum_probs=102.5
Q ss_pred CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCC
Q psy13390 93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNM 171 (245)
Q Consensus 93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~ 171 (245)
.+.||+|... ..+.++ .+.+.+|||+|+++++..+..+++++|++++|||++++.+++....|+..+..... .++
T Consensus 49 ~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 124 (189)
T 2x77_A 49 TTVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKS 124 (189)
T ss_dssp EECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTC
T ss_pred CcCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCC
Confidence 4577888543 344444 46799999999999999999999999999999999999999999988888766432 579
Q ss_pred eEEEEEeCCCCccCcccCHHHHHH-----HHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390 172 VIMLIGNKSDLDARREVKKEEGEV-----FAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 229 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 229 (245)
|+++|+||+|+.... ..++... .+...+++++++||++|.|++++|+++.+.+.+.
T Consensus 125 piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 125 LLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp EEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred eEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 999999999996542 2222221 1122356799999999999999999999988653
No 102
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.84 E-value=1.4e-19 Score=138.44 Aligned_cols=136 Identities=54% Similarity=0.852 Sum_probs=121.9
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN 170 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 170 (245)
...+.||+|.++....+.+++..+.+.+|||+|++++..++..+++.++++++|||.++..+++.+..|+..+......+
T Consensus 55 ~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 134 (191)
T 1oix_A 55 NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN 134 (191)
T ss_dssp CCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred CCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence 34678999999988899999999999999999999999999999999999999999999999998888988776655467
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i 226 (245)
.|+++++||+|+...+....++++.++...++.++++||+++.|++++|+++.+.+
T Consensus 135 ~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 135 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 89999999999976666778889999999999999999999999999999998765
No 103
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.84 E-value=1.4e-20 Score=142.55 Aligned_cols=128 Identities=21% Similarity=0.274 Sum_probs=101.7
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN 170 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~ 170 (245)
..+.||+|.++. .+.+++ +.+.+|||+|+++++.++..+++++|++++|||++++.+++.+..|+..+.... ..+
T Consensus 47 ~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~ 122 (181)
T 2h17_A 47 VHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRK 122 (181)
T ss_dssp EEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTT
T ss_pred CccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCC
Confidence 456788886653 444544 789999999999999999999999999999999999999999999988877642 257
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFA-----REHGLVFMETSAKLATNVEEAFIDTAKE 225 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 225 (245)
+|+++|+||+|+... ...++..... ...+++++++||++|.|++++|+++.+.
T Consensus 123 ~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 123 AGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp CEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred CeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 999999999999643 2333333332 2234679999999999999999999764
No 104
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=6.3e-21 Score=144.51 Aligned_cols=133 Identities=20% Similarity=0.282 Sum_probs=101.8
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN 170 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~ 170 (245)
..+.||+|... ..+.+++ ..+.+|||+|++.+...+..+++++|++++|||++++.+++.+..|+..+.... ..+
T Consensus 44 ~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 119 (183)
T 1moz_A 44 VTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQD 119 (183)
T ss_dssp EEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSS
T ss_pred CccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCC
Confidence 45678888554 3444544 779999999999999999999999999999999999999999999988887654 367
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAR-----EHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 230 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 230 (245)
+|+++|+||+|+... ...++...... ..+++++++||++|.|++++|+++.+.+.+++
T Consensus 120 ~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~q 182 (183)
T 1moz_A 120 AALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 182 (183)
T ss_dssp CEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhcc
Confidence 999999999998643 23333333221 12457999999999999999999999987653
No 105
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.84 E-value=7.2e-22 Score=161.18 Aligned_cols=129 Identities=17% Similarity=0.199 Sum_probs=100.7
Q ss_pred CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhh---hhHhhccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhc
Q psy13390 93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRS---ITRSYYRGAAGALLVYDITRR--ETFNHLTTWLEDARQHS 167 (245)
Q Consensus 93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~vi~v~d~~~~--~s~~~~~~~~~~~~~~~ 167 (245)
.+.||+|.++.. ++ ..+++++|||||+++|+. .++.||++++++|+|||++++ .+++....|+..+....
T Consensus 30 ~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~ 104 (331)
T 3r7w_B 30 YLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN 104 (331)
T ss_dssp TCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC
T ss_pred eecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC
Confidence 467899988853 23 347899999999999964 468899999999999999987 33344444455554444
Q ss_pred CCCCeEEEEEeCCCCccC-------cccCHHHHHHHHHH----cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 168 NSNMVIMLIGNKSDLDAR-------REVKKEEGEVFARE----HGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 168 ~~~~piivv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
+++|++++|||+|+... +.+..+++..++.. .++++++|||++ .+|.+.|..+++.+.+
T Consensus 105 -~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 105 -PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp -TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred -CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 68999999999999653 34666777777775 578899999998 5999999999987754
No 106
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.83 E-value=1.5e-20 Score=156.29 Aligned_cols=120 Identities=15% Similarity=0.184 Sum_probs=95.7
Q ss_pred eEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCC
Q psy13390 112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDIT----------RRETFNHLTTWLEDARQHSN-SNMVIMLIGNKS 180 (245)
Q Consensus 112 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~ 180 (245)
+.+.+++|||+|++.++.+|..||++++++|||||++ +..+++....|+..+..... .++|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 6789999999999999999999999999999999998 77899999999988876532 679999999999
Q ss_pred CCccCcc--c-------------------CHHHHHHHHHH----------------cCCcEEEeccCCCCCHHHHHHHHH
Q psy13390 181 DLDARRE--V-------------------KKEEGEVFARE----------------HGLVFMETSAKLATNVEEAFIDTA 223 (245)
Q Consensus 181 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~i~ 223 (245)
|+..++. + +.+++..++.. ..+.+++|||+++.||+++|.++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9853321 1 14556665432 123468999999999999999999
Q ss_pred HHHHHHHh
Q psy13390 224 KEIYEKIQ 231 (245)
Q Consensus 224 ~~i~~~~~ 231 (245)
+.+.+...
T Consensus 341 ~~I~~~~l 348 (354)
T 2xtz_A 341 ETLRRRNL 348 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99876543
No 107
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.82 E-value=4.5e-20 Score=155.09 Aligned_cols=130 Identities=17% Similarity=0.194 Sum_probs=102.2
Q ss_pred CCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhh
Q psy13390 97 GGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITR----------RETFNHLTTWLEDARQH 166 (245)
Q Consensus 97 tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~~~~~ 166 (245)
|+|.+. ..+.+++ +.+++|||+|++.++.+|..||++++++|||||+++ ..+|+....|+..+...
T Consensus 204 TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 204 TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp CCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred eeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 455443 3344443 789999999999999999999999999999999999 88999999999998775
Q ss_pred c-CCCCeEEEEEeCCCCccCcc---c---------------------------CHHHHHHHH-----HH--------cCC
Q psy13390 167 S-NSNMVIMLIGNKSDLDARRE---V---------------------------KKEEGEVFA-----RE--------HGL 202 (245)
Q Consensus 167 ~-~~~~piivv~nK~Dl~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~ 202 (245)
. ..++|++||+||+|+...+. + ..+++..++ .. ..+
T Consensus 280 ~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~ 359 (402)
T 1azs_C 280 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC 359 (402)
T ss_dssp TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE
T ss_pred ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc
Confidence 3 36799999999999854322 1 134455543 21 245
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390 203 VFMETSAKLATNVEEAFIDTAKEIYEKI 230 (245)
Q Consensus 203 ~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 230 (245)
.+++|||+++.||+++|.++.+.+....
T Consensus 360 ~~~~TSA~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 360 YPHFTCAVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeecCcCHHHHHHHHHHHHHHHH
Confidence 5789999999999999999998887654
No 108
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.82 E-value=1.6e-20 Score=153.92 Aligned_cols=132 Identities=13% Similarity=0.163 Sum_probs=105.6
Q ss_pred CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHH
Q psy13390 94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDIT----------RRETFNHLTTWLEDA 163 (245)
Q Consensus 94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~~ 163 (245)
..||+|.. ...+.+ +.+.+++|||+|+++++.+|..||++++++|||||++ +..++++...|+..+
T Consensus 151 r~~TiGi~--~~~~~~--~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i 226 (327)
T 3ohm_A 151 RVPTTGII--EYPFDL--QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTI 226 (327)
T ss_dssp CCCCCSEE--EEEEEE--TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred cCceeeEE--EEEEEe--eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHH
Confidence 56777743 233333 4588999999999999999999999999999999654 667888888888888
Q ss_pred HhhcC-CCCeEEEEEeCCCCccCc----------------ccCHHHHHHHHH----------HcCCcEEEeccCCCCCHH
Q psy13390 164 RQHSN-SNMVIMLIGNKSDLDARR----------------EVKKEEGEVFAR----------EHGLVFMETSAKLATNVE 216 (245)
Q Consensus 164 ~~~~~-~~~piivv~nK~Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~ 216 (245)
..... .++|++|++||+|+...+ ..+.+++..++. ..++.+++|||+++.||+
T Consensus 227 ~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~ 306 (327)
T 3ohm_A 227 ITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIR 306 (327)
T ss_dssp HTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHH
T ss_pred hhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHH
Confidence 76543 679999999999986533 356777777742 345668999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy13390 217 EAFIDTAKEIYEK 229 (245)
Q Consensus 217 ~~~~~i~~~i~~~ 229 (245)
.+|..+.+.+++.
T Consensus 307 ~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 307 FVFAAVKDTILQL 319 (327)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999764
No 109
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.81 E-value=3.8e-20 Score=154.37 Aligned_cols=135 Identities=18% Similarity=0.183 Sum_probs=100.9
Q ss_pred CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHH
Q psy13390 94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITR----------RETFNHLTTWLEDA 163 (245)
Q Consensus 94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~~ 163 (245)
..||+|.+. ..+.++ .+.+.+|||+|++.++..|..|+++++++|||||+++ ..++++...|+..+
T Consensus 185 r~~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i 260 (362)
T 1zcb_A 185 RRPTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETI 260 (362)
T ss_dssp CCCCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHH
T ss_pred cCCccceEE--EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHH
Confidence 346677654 334444 4789999999999999999999999999999999999 77899999999888
Q ss_pred Hhhc-CCCCeEEEEEeCCCCccCc----------------ccCHHHHHHHHH-----------HcCCcEEEeccCCCCCH
Q psy13390 164 RQHS-NSNMVIMLIGNKSDLDARR----------------EVKKEEGEVFAR-----------EHGLVFMETSAKLATNV 215 (245)
Q Consensus 164 ~~~~-~~~~piivv~nK~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i 215 (245)
.... ..++|+||++||+|+..++ .++.+++..++. ...+.+++|||+++.||
T Consensus 261 ~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV 340 (362)
T 1zcb_A 261 VNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENI 340 (362)
T ss_dssp HTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHH
T ss_pred hcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhH
Confidence 7653 2679999999999986422 256677777652 34577899999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy13390 216 EEAFIDTAKEIYEKIQE 232 (245)
Q Consensus 216 ~~~~~~i~~~i~~~~~~ 232 (245)
+++|.++.+.+.+...+
T Consensus 341 ~~vF~~v~~~i~~~~l~ 357 (362)
T 1zcb_A 341 RLVFRDVKDTILHDNLK 357 (362)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999765543
No 110
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.81 E-value=5.9e-21 Score=152.64 Aligned_cols=117 Identities=24% Similarity=0.316 Sum_probs=93.1
Q ss_pred ECCeEEEEEEEc-----------------------CCChhhhhhhhHhhcc---------------------CCcEEEEE
Q psy13390 109 IDGKQIKLQIWD-----------------------TAGQEAFRSITRSYYR---------------------GAAGALLV 144 (245)
Q Consensus 109 ~~~~~~~~~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~~d~vi~v 144 (245)
+++..+.+.||| ++|+++|..++..+++ +||++|+|
T Consensus 90 ~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV 169 (255)
T 3c5h_A 90 EDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLG 169 (255)
T ss_dssp ------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEE
T ss_pred cCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEE
Confidence 456788999999 7888888888888888 89999999
Q ss_pred EeCCCh--hhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCccCcccCHHHHHHHHHH-cCCcEEEeccCCCCCHHHHHH
Q psy13390 145 YDITRR--ETFNHLTTWLEDARQH-SNSNMVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFI 220 (245)
Q Consensus 145 ~d~~~~--~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~ 220 (245)
||++++ .+|+.+..|+..+... ...++|+++|+||+|+...+.+ ++...++.. .+++++++||++|.|++++|+
T Consensus 170 ~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~ 247 (255)
T 3c5h_A 170 IDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFS 247 (255)
T ss_dssp EECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHH
T ss_pred EECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHH
Confidence 999998 9999999999988765 2357999999999999654443 566677765 478999999999999999999
Q ss_pred HHHHHHH
Q psy13390 221 DTAKEIY 227 (245)
Q Consensus 221 ~i~~~i~ 227 (245)
++++.+.
T Consensus 248 ~l~~~l~ 254 (255)
T 3c5h_A 248 TLVQLID 254 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988763
No 111
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.81 E-value=7.4e-20 Score=150.56 Aligned_cols=135 Identities=16% Similarity=0.224 Sum_probs=104.9
Q ss_pred CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHH
Q psy13390 94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDIT----------RRETFNHLTTWLEDA 163 (245)
Q Consensus 94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~~ 163 (245)
+.||+|.. ...+..+.+.+++|||+|+++++.+|..||++++++|||||++ +..++.+...|+..+
T Consensus 145 ~~~TiGi~----~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i 220 (340)
T 4fid_A 145 RTKTTGIH----EYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI 220 (340)
T ss_dssp CCCCCSCE----EEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH
T ss_pred ccceeeeE----EEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH
Confidence 44556643 3344445688999999999999999999999999999999998 678898888888888
Q ss_pred HhhcC-CCCeEEEEEeCCCCccCc---------------ccCHHHHHHHHHH---------------------------c
Q psy13390 164 RQHSN-SNMVIMLIGNKSDLDARR---------------EVKKEEGEVFARE---------------------------H 200 (245)
Q Consensus 164 ~~~~~-~~~piivv~nK~Dl~~~~---------------~~~~~~~~~~~~~---------------------------~ 200 (245)
..... .++|++|++||+|+..++ ....+++..++.. .
T Consensus 221 ~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (340)
T 4fid_A 221 MTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNE 300 (340)
T ss_dssp HHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------C
T ss_pred hhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCc
Confidence 76543 679999999999985321 1234555444322 2
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390 201 GLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 232 (245)
Q Consensus 201 ~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~ 232 (245)
.+.++++||+++.||+.+|..+.+.|++...+
T Consensus 301 ~iy~h~TsA~dt~nv~~vF~~v~~~Il~~l~~ 332 (340)
T 4fid_A 301 KVYTNPTNATDGSNIKRVFMLAVDVIMKNMAA 332 (340)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeeCcHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999874433
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=5.5e-20 Score=160.44 Aligned_cols=134 Identities=22% Similarity=0.356 Sum_probs=103.7
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-C
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-S 169 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~ 169 (245)
...+.||+|.++.. +....+.+.||||+|++.++.++..+++++|++|+|||++++.+++.+..|+..+..... .
T Consensus 347 ~~~~~~T~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~ 422 (497)
T 3lvq_E 347 SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMR 422 (497)
T ss_dssp CCCCCCCSSEEEEE----EESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGT
T ss_pred CCCcCCccceeEEE----EEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcC
Confidence 34567888877653 333457899999999999999999999999999999999999999999999888866432 5
Q ss_pred CCeEEEEEeCCCCccCcccCHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390 170 NMVIMLIGNKSDLDARREVKKEEGEVFA-----REHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 230 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 230 (245)
++|++||+||+|+.... ...+..... ...+++++++||++|.||+++|++|.+.+.+..
T Consensus 423 ~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 423 DAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp TCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC---
T ss_pred CCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 79999999999996432 222222211 112456999999999999999999998875443
No 113
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.79 E-value=4.6e-19 Score=145.34 Aligned_cols=129 Identities=20% Similarity=0.294 Sum_probs=104.7
Q ss_pred CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhh-----hhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHH---H
Q psy13390 93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAF-----RSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA---R 164 (245)
Q Consensus 93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~---~ 164 (245)
.+.+|++.++.... +.+ .+.+.+|||||++.+ ..++..+++++|++++|||++++.+++++..|...+ .
T Consensus 34 ~~~~Ti~~~~~~~~--~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~ 110 (307)
T 3r7w_A 34 RLGATIDVEHSHLR--FLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLR 110 (307)
T ss_dssp GCCCCCSEEEEEEE--ETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHH
T ss_pred CcCCccceEEEEEE--eCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHH
Confidence 56778887776433 434 578999999999988 678889999999999999999999999887765444 3
Q ss_pred hhcCCCCeEEEEEeCCCCcc--Ccc----cCHHHHHHHHHHcC---CcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390 165 QHSNSNMVIMLIGNKSDLDA--RRE----VKKEEGEVFAREHG---LVFMETSAKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 165 ~~~~~~~piivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~~~~i~~~i 226 (245)
... +++|+++|+||+|+.. .+. +..+++..++..++ ++++++||++ .++.++|..+++.+
T Consensus 111 ~~~-~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 111 KYS-PDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp HHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred HhC-CCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 333 5799999999999975 343 55577888888887 6899999999 89999999888755
No 114
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.79 E-value=8.9e-20 Score=150.90 Aligned_cols=129 Identities=21% Similarity=0.318 Sum_probs=94.9
Q ss_pred CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCe
Q psy13390 94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNMV 172 (245)
Q Consensus 94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p 172 (245)
..||++..+.. ++...+.+.||||+|++.+..++..+++.+|++|+|||++++.+++.+..|+..+..... .++|
T Consensus 193 ~~pT~~~~~~~----~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p 268 (329)
T 3o47_A 193 TIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 268 (329)
T ss_dssp EEEETTEEEEE----EEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE
T ss_pred cccccceEEEE----EecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe
Confidence 34677755432 333457899999999999999999999999999999999999999999888777655432 5799
Q ss_pred EEEEEeCCCCccCcccCHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 173 IMLIGNKSDLDARREVKKEEGEVFA-----REHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 173 iivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
++||+||+|+.... ..++..... ...+++++++||++|.||+++|+++.+.+.+
T Consensus 269 iilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 269 LLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp EEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred EEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 99999999997543 222222211 1234579999999999999999999988754
No 115
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.78 E-value=4.1e-19 Score=145.16 Aligned_cols=121 Identities=16% Similarity=0.080 Sum_probs=98.2
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCC
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRE-TFNHLTTWLEDARQHSNSN 170 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~ 170 (245)
..+.||+|..+. ..+..++ .+.+||| +++|+.+++.+++++|++|+|||++++. ++..+..|+..+.. .+
T Consensus 45 ~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~ 115 (301)
T 1u0l_A 45 QNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NE 115 (301)
T ss_dssp TTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TT
T ss_pred cCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CC
Confidence 568899995553 3322222 6899999 9999999999999999999999999987 78888999987754 36
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHG--LVFMETSAKLATNVEEAFIDTA 223 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~ 223 (245)
+|+++|+||+|+...+.+ ++...++..+. ++++++||++|.|++++|..+.
T Consensus 116 ~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 116 LETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp CEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred CCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 899999999999654332 34566666666 8999999999999999998765
No 116
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.78 E-value=2.8e-18 Score=133.25 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=87.2
Q ss_pred CCcceeeEEEEEECCe-EEEEEEEcCCChhhhhh-hhHhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhh---cCCC
Q psy13390 97 GGGVEFGARMITIDGK-QIKLQIWDTAGQEAFRS-ITRSYYRGAAGALLVYDITRRE-TFNHLTTWLEDARQH---SNSN 170 (245)
Q Consensus 97 tig~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~---~~~~ 170 (245)
+++.++.. +.+++. .+.+.+|||+|++++.. ++..+++++|++++|||+++.. ++.....|+..+... ...+
T Consensus 38 ~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (214)
T 2fh5_B 38 SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNS 115 (214)
T ss_dssp CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccC
Confidence 44444433 555543 67899999999999988 8889999999999999999854 455555544443222 2357
Q ss_pred CeEEEEEeCCCCccCcccCH--HHHHHHHH---------------------------------Hc--CCcEEEeccCCC-
Q psy13390 171 MVIMLIGNKSDLDARREVKK--EEGEVFAR---------------------------------EH--GLVFMETSAKLA- 212 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~--~~~~~~~~---------------------------------~~--~~~~~~~Sa~~~- 212 (245)
+|+++|+||+|+........ +....... .+ ++++++|||++|
T Consensus 116 ~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~ 195 (214)
T 2fh5_B 116 PSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGR 195 (214)
T ss_dssp CEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC---
T ss_pred CCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCC
Confidence 89999999999975432110 11111101 11 567999999999
Q ss_pred -----CCHHHHHHHHHHH
Q psy13390 213 -----TNVEEAFIDTAKE 225 (245)
Q Consensus 213 -----~~i~~~~~~i~~~ 225 (245)
.||+++|+++.+.
T Consensus 196 ~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 196 GDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----CCBCHHHHHHHHHH
T ss_pred ccccccChHHHHHHHHHh
Confidence 9999999999875
No 117
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.78 E-value=1.6e-18 Score=129.32 Aligned_cols=122 Identities=19% Similarity=0.155 Sum_probs=90.5
Q ss_pred CCCcceeeEEEEEECCeEEEEEEEcCCChhhhh------hhhHhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhc
Q psy13390 96 SGGGVEFGARMITIDGKQIKLQIWDTAGQEAFR------SITRSYYR--GAAGALLVYDITRRETFNHLTTWLEDARQHS 167 (245)
Q Consensus 96 ~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~ 167 (245)
|+++.+.....+.+++ ..+.+|||+|++.+. .+...+++ ++|++++|+|+++.. ....|+..+..
T Consensus 34 ~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~-- 106 (165)
T 2wji_A 34 PGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALE---RNLYLTLQLME-- 106 (165)
T ss_dssp ---CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHH---HHHHHHHHHHH--
T ss_pred CCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchh---HhHHHHHHHHh--
Confidence 4444455455555655 479999999998764 34566765 899999999998754 34456666654
Q ss_pred CCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390 168 NSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 168 ~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i 226 (245)
.++|+++|+||+|+...+.+.. +...++..++++++++||++|.|++++|+++.+.+
T Consensus 107 -~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 107 -MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp -TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred -cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3589999999999865444432 35667777889999999999999999999998764
No 118
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.76 E-value=1.3e-17 Score=131.03 Aligned_cols=116 Identities=18% Similarity=0.113 Sum_probs=87.5
Q ss_pred EEEEEEcCCCh------hh----hhhhhHhhccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCC
Q psy13390 114 IKLQIWDTAGQ------EA----FRSITRSYYRGAAGALLVYDITRRETFN--HLTTWLEDARQHSNSNMVIMLIGNKSD 181 (245)
Q Consensus 114 ~~~~l~Dt~G~------~~----~~~~~~~~~~~~d~vi~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piivv~nK~D 181 (245)
..+.||||+|+ ++ +.. +..++..+|++++|||++++.+++ ....|+..+.... .++|+++|+||+|
T Consensus 76 ~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~D 153 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFENRNTIEMTT-ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKID 153 (228)
T ss_dssp EEEEEEECTTTTTSCGGGCCHHHHHH-HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGG
T ss_pred CeEEEEECCCCcCcccchhhhHHHHH-HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcc
Confidence 67999999999 43 222 234678999999999999987764 2335666555442 4789999999999
Q ss_pred CccCcccCHH---HHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390 182 LDARREVKKE---EGEVFAREHG--LVFMETSAKLATNVEEAFIDTAKEIYEKIQ 231 (245)
Q Consensus 182 l~~~~~~~~~---~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~ 231 (245)
+...+.+... ....++...+ ++++++||++|.|++++|+++.+.+.+.+.
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 154 KCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp GCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHH
Confidence 9766666554 4556666666 789999999999999999999999976653
No 119
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.75 E-value=9.4e-18 Score=126.26 Aligned_cols=129 Identities=20% Similarity=0.177 Sum_probs=92.4
Q ss_pred CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe
Q psy13390 93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172 (245)
Q Consensus 93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 172 (245)
.+.|+++.++....+.+++. .+.+|||+|++.+..++..+++.+|++++|||++++...+... ++..+. ..++|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~l~~~~---~~~~p 109 (178)
T 2lkc_A 36 QEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVE-AINHAK---AANVP 109 (178)
T ss_dssp SSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHH-HHHHHG---GGSCC
T ss_pred CCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHH---hCCCC
Confidence 34566666666667777765 4789999999999999999999999999999998843322221 222222 24689
Q ss_pred EEEEEeCCCCccCcccCHHHHHHHHHHc-------C--CcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390 173 IMLIGNKSDLDARREVKKEEGEVFAREH-------G--LVFMETSAKLATNVEEAFIDTAKEIYEKI 230 (245)
Q Consensus 173 iivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 230 (245)
+++|+||+|+... ..++........ + ++++++||++|.|++++|+++.+.+...+
T Consensus 110 ~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 110 IIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp EEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhc
Confidence 9999999999643 222222222221 1 47999999999999999999998876543
No 120
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.73 E-value=1.5e-17 Score=127.06 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=87.9
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCC----------hhhhhhhhHhhccCC---cEEEEEEeCCChhhHHHHHH
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAG----------QEAFRSITRSYYRGA---AGALLVYDITRRETFNHLTT 158 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~~~~~~~~~---d~vi~v~d~~~~~s~~~~~~ 158 (245)
..+.++.|.++......+++ .+.+|||+| ++.+..++..+++.+ |++++|+|++++.++.+..
T Consensus 50 ~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~- 125 (195)
T 1svi_A 50 ARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ- 125 (195)
T ss_dssp ----------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-
T ss_pred cccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-
Confidence 45667777777666666654 599999999 888888888888877 9999999999887776542
Q ss_pred HHHHHHhhcCCCCeEEEEEeCCCCccCcccCH--HHHHH-HHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKK--EEGEV-FAREHGLVFMETSAKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 159 ~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~-~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i 226 (245)
++..+.. .+.|+++|+||+|+...+.+.. ++... ++...+++++++||++|.|++++|+++.+.+
T Consensus 126 ~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 126 MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 2222222 4689999999999976543322 22222 2223457899999999999999999998876
No 121
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.72 E-value=2.3e-18 Score=151.45 Aligned_cols=133 Identities=15% Similarity=0.210 Sum_probs=102.1
Q ss_pred CCCCCCCcceeeEEE------E--EECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHH
Q psy13390 92 SGSSSGGGVEFGARM------I--TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA 163 (245)
Q Consensus 92 ~~~~~tig~~~~~~~------~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~ 163 (245)
..+.||+|.++.... + ..++..+.+.+|||+|++.+..++..+++.+|++++|||+++. +....|+..+
T Consensus 68 ~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l 144 (535)
T 3dpu_A 68 PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHI 144 (535)
T ss_dssp -------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHH
T ss_pred CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHH
Confidence 567899998887552 1 2234467899999999999999999999999999999999765 5566788888
Q ss_pred HhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 164 ~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
..+. .+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.+
T Consensus 145 ~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 145 EKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp HHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred HHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 7776 578999999999998777778888888888889999999999999999999999988755
No 122
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.72 E-value=2.3e-17 Score=125.46 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=86.1
Q ss_pred EEEEEcCCC-----------hhhhhhhhHhhccC-CcEEEEEEeCCChhhHHHH-HHHHHH--------H-HhhcCCCCe
Q psy13390 115 KLQIWDTAG-----------QEAFRSITRSYYRG-AAGALLVYDITRRETFNHL-TTWLED--------A-RQHSNSNMV 172 (245)
Q Consensus 115 ~~~l~Dt~G-----------~~~~~~~~~~~~~~-~d~vi~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~p 172 (245)
.+.+|||+| ++.+...+..+++. ++++++||++.+..++..+ ..|... + ......++|
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 124 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 124 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence 589999999 78888888888887 7766666666666777766 455542 2 222225799
Q ss_pred EEEEEeCCCCccCcccCHHHHHHHHHHcCCc-------EEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLV-------FMETSAKLATNVEEAFIDTAKEIYEKI 230 (245)
Q Consensus 173 iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 230 (245)
+++|+||+|+...+ .+....++..++++ ++++||++|.|++++|+++.+.+.+..
T Consensus 125 iilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 125 TIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp EEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred eEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 99999999997543 55677777777764 799999999999999999999886644
No 123
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.71 E-value=5.5e-18 Score=127.36 Aligned_cols=120 Identities=19% Similarity=0.198 Sum_probs=87.9
Q ss_pred CcceeeEEEEEECCeEEEEEEEcCCChhhhhh------h--hHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC
Q psy13390 98 GGVEFGARMITIDGKQIKLQIWDTAGQEAFRS------I--TRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS 169 (245)
Q Consensus 98 ig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~--~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~ 169 (245)
.+.++....+.+++. .+.+|||+|++.+.. + ...+++.+|++++|||++++.+++. ..|+..+......
T Consensus 38 ~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~ 114 (172)
T 2gj8_A 38 TTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPA 114 (172)
T ss_dssp CCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCT
T ss_pred ceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhccc
Confidence 344555666777764 489999999864321 1 1246899999999999999888763 4677777666545
Q ss_pred CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
++|+++|+||+|+..... .++...+.+++++||++|.|++++|+++.+.+.
T Consensus 115 ~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 115 KLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp TCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred CCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 799999999999853211 011224568999999999999999999988763
No 124
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.71 E-value=4e-17 Score=123.98 Aligned_cols=126 Identities=18% Similarity=0.154 Sum_probs=96.3
Q ss_pred CCCCcceeeEEEEEECCeEEEEEEEcCCChhhhh------hhhHhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy13390 95 SSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFR------SITRSYYR--GAAGALLVYDITRRETFNHLTTWLEDARQH 166 (245)
Q Consensus 95 ~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~ 166 (245)
.|+++.+.....+.+++ ..+.+|||+|++.+. .++..++. .+|++++|+|.++ ++....|+..+..
T Consensus 37 ~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~- 110 (188)
T 2wjg_A 37 WPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME- 110 (188)
T ss_dssp CTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT-
T ss_pred CCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh-
Confidence 34555555555566655 679999999998774 45666665 5999999999875 5566677776654
Q ss_pred cCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390 167 SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 229 (245)
Q Consensus 167 ~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 229 (245)
.+.|+++|+||+|+...+.+. .....++...+++++++||++|.|++++|+++.+.+.+.
T Consensus 111 --~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 111 --MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp --TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred --cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 458999999999986544444 346677778889999999999999999999999887543
No 125
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.71 E-value=8.3e-17 Score=131.93 Aligned_cols=130 Identities=15% Similarity=0.045 Sum_probs=98.8
Q ss_pred CCCCcceeeEEEEEECCe-EEEEEEEcCCChhhh----------hhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHH
Q psy13390 95 SSGGGVEFGARMITIDGK-QIKLQIWDTAGQEAF----------RSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA 163 (245)
Q Consensus 95 ~~tig~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~----------~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~ 163 (245)
.++.+++.......+... ...+.||||||+... ...+..+++.+|++++|+|++++.++++...|+..+
T Consensus 39 s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l 118 (308)
T 3iev_A 39 SPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI 118 (308)
T ss_dssp CSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHT
T ss_pred CCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHH
Confidence 344444444333333333 567999999998443 356678899999999999999988888877777776
Q ss_pred HhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHG--LVFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 164 ~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
... ++|+++|+||+|+...+....+....+....+ .+++++||++|.|++++|+++.+.+.
T Consensus 119 ~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 119 KPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp GGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred Hhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 653 58999999999997444455666777777765 77999999999999999999998774
No 126
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.70 E-value=7e-17 Score=119.38 Aligned_cols=116 Identities=15% Similarity=0.096 Sum_probs=83.3
Q ss_pred ceeeEEEEEECCeEEEEEEEcCCChhh-------hhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe
Q psy13390 100 VEFGARMITIDGKQIKLQIWDTAGQEA-------FRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172 (245)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 172 (245)
.+.....+.+++. .+.+|||+|++. +...+..+++.+|++++|+|++++.+... .|+..+... .+.|
T Consensus 37 ~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p 110 (161)
T 2dyk_A 37 RDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKP 110 (161)
T ss_dssp -CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCC
T ss_pred ecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh--cCCC
Confidence 3444455555554 689999999987 45566778999999999999998644432 222222222 3589
Q ss_pred EEEEEeCCCCccCcccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q psy13390 173 IMLIGNKSDLDARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 173 iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i 226 (245)
+++|+||+|+.... ++...++ ..++ +++++||++|.|++++|+++.+.+
T Consensus 111 ~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 111 VILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp EEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 99999999996542 2233444 5677 799999999999999999998764
No 127
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.69 E-value=3.5e-16 Score=119.21 Aligned_cols=129 Identities=15% Similarity=0.160 Sum_probs=94.4
Q ss_pred CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCC----------hhhhhhhhHhhccCC---cEEEEEEeCCChhhHH--H
Q psy13390 91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAG----------QEAFRSITRSYYRGA---AGALLVYDITRRETFN--H 155 (245)
Q Consensus 91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~~~~~~~~~---d~vi~v~d~~~~~s~~--~ 155 (245)
...+.++.|.++.......+. .+.+|||+| ++.+..++..+++.+ |++++|+|++++.+.. .
T Consensus 48 ~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~ 124 (195)
T 3pqc_A 48 IAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM 124 (195)
T ss_dssp CSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH
T ss_pred cccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHH
Confidence 456677888777666555544 478999999 777888888888877 9999999998764433 3
Q ss_pred HHHHHHHHHhhcCCCCeEEEEEeCCCCccCc--ccCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 156 LTTWLEDARQHSNSNMVIMLIGNKSDLDARR--EVKKEEGEVFAREH-GLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 156 ~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
+..|+.. .++|+++|+||+|+.... ....++...++... .++++++||++|.|++++|+++.+.+.+
T Consensus 125 ~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 125 MVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp HHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 3334332 258999999999986432 23334555555553 4789999999999999999999988743
No 128
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.68 E-value=6.5e-17 Score=130.09 Aligned_cols=120 Identities=20% Similarity=0.179 Sum_probs=92.1
Q ss_pred cceeeEEEEEECCeEEEEEEEcCCChhhhh------hhhHhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFR------SITRSYYR--GAAGALLVYDITRRETFNHLTTWLEDARQHSNSN 170 (245)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 170 (245)
|.++......+.. ...+.+|||||+..+. .+++.|+. .+|++++|+|+++.++ ...|...+.. .+
T Consensus 35 g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~---~~~~~~~l~~---~~ 107 (272)
T 3b1v_A 35 GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLER---NLYLTTQLIE---TG 107 (272)
T ss_dssp CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHH---HHHHHHHHHH---TC
T ss_pred CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHh---HHHHHHHHHh---cC
Confidence 5555555555665 6679999999998775 45666776 6999999999987544 3445555544 35
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i 226 (245)
+|+++|+||+|+...+.+. .+...++..++++++++||++|.|++++|+++.+.+
T Consensus 108 ~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 108 IPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp SCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred CCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 8999999999986544444 345677788899999999999999999999998754
No 129
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.67 E-value=1.2e-16 Score=127.73 Aligned_cols=122 Identities=18% Similarity=0.146 Sum_probs=90.0
Q ss_pred cceeeEEEEEECCeEEEEEEEcCCChhhhhh------hhHhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRS------ITRSYY--RGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN 170 (245)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 170 (245)
|.++......+......+.||||||+..+.. +.+.++ ..+|++++|+|+++..+. ..|...+.. .+
T Consensus 37 g~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~ 110 (258)
T 3a1s_A 37 GVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILE---ME 110 (258)
T ss_dssp TSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHT---TT
T ss_pred CceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHh---cC
Confidence 3344444433433346899999999987754 335565 589999999999986543 335555544 35
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
+|+++|+||+|+...+.+.. +...++..++++++++||++|.|++++|+++.+.+.
T Consensus 111 ~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 111 KKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 89999999999865444442 366778888999999999999999999999988653
No 130
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.66 E-value=3.4e-16 Score=122.16 Aligned_cols=134 Identities=16% Similarity=0.083 Sum_probs=91.1
Q ss_pred CCCCCCcceeeEEEEEEC-CeEEEEEEEcCCC----------hhhhhhhhHhhccC---CcEEEEEEeCCChhhHHHHHH
Q psy13390 93 GSSSGGGVEFGARMITID-GKQIKLQIWDTAG----------QEAFRSITRSYYRG---AAGALLVYDITRRETFNHLTT 158 (245)
Q Consensus 93 ~~~~tig~~~~~~~~~~~-~~~~~~~l~Dt~G----------~~~~~~~~~~~~~~---~d~vi~v~d~~~~~s~~~~~~ 158 (245)
...++.|.+.......+. .....+.|||||| ++.+..+...+++. +|++++|+|++++.+.. ...
T Consensus 57 ~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~ 135 (223)
T 4dhe_A 57 FASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRR 135 (223)
T ss_dssp CTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHH
T ss_pred eecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHH
Confidence 445566666666666665 4456799999999 46666777777776 78899999998764432 233
Q ss_pred HHHHHHhhcCCCCeEEEEEeCCCCccCcccC--HHHHHH-HHHH------cCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVK--KEEGEV-FARE------HGLVFMETSAKLATNVEEAFIDTAKEIYEK 229 (245)
Q Consensus 159 ~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~-~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 229 (245)
|+..+.. .++|+++|+||+|+....... .+.... +... .+.+++++||++|.|++++|+++.+.+...
T Consensus 136 ~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 136 MIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred HHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 4444443 358999999999986533221 111222 2222 457799999999999999999999988654
Q ss_pred H
Q psy13390 230 I 230 (245)
Q Consensus 230 ~ 230 (245)
.
T Consensus 213 ~ 213 (223)
T 4dhe_A 213 A 213 (223)
T ss_dssp -
T ss_pred C
Confidence 3
No 131
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.65 E-value=3e-16 Score=125.20 Aligned_cols=121 Identities=15% Similarity=0.068 Sum_probs=88.7
Q ss_pred CCCcceeeEEEEEECCeEEEEEEEcCCChhhhhh----------hhHhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHH
Q psy13390 96 SGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRS----------ITRSYY--RGAAGALLVYDITRRETFNHLTTWLEDA 163 (245)
Q Consensus 96 ~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~ 163 (245)
|+++.+.....+.+++. .+.+|||||...+.. +++.++ +++|++++|+|+++.++...+..+ +
T Consensus 32 pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~---l 106 (256)
T 3iby_A 32 PGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQ---L 106 (256)
T ss_dssp TTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHH---H
T ss_pred CCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHH---H
Confidence 34444555555666664 799999999977653 556677 899999999999986554443332 3
Q ss_pred HhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q psy13390 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 225 (245)
Q Consensus 164 ~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 225 (245)
.. .++|+++|+||+|+...+.+.. ....+...++++++++||++|.|++++|+++.+.
T Consensus 107 ~~---~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 107 FE---LGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp TT---SCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred HH---cCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 22 3689999999999865443222 2344667789999999999999999999999775
No 132
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.63 E-value=2.5e-15 Score=132.63 Aligned_cols=127 Identities=23% Similarity=0.292 Sum_probs=94.3
Q ss_pred CCCcceeeEEEEEE-----CCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390 96 SGGGVEFGARMITI-----DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN 170 (245)
Q Consensus 96 ~tig~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 170 (245)
.+.|.++......+ ++..+.++||||||+.+|...+..+++.+|++++|+|++++.+.+....|..... .+
T Consensus 48 rerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ 123 (599)
T 3cb4_D 48 RERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MD 123 (599)
T ss_dssp ---------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TT
T ss_pred hcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CC
Confidence 34455554443333 4567899999999999999999999999999999999999888787777765442 35
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCc---EEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLV---FMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
+|+++|+||+|+...+ ..+....+...+++. ++++||++|.|++++|+++.+.+..
T Consensus 124 ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 124 LEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp CEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred CCEEEeeeccCccccc--HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 8999999999997543 233345566666664 8999999999999999999887743
No 133
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.63 E-value=1.7e-16 Score=136.88 Aligned_cols=123 Identities=17% Similarity=0.104 Sum_probs=76.8
Q ss_pred CcceeeEEEEEECCeEEEEEEEcCCChhhhhhhh--------HhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC
Q psy13390 98 GGVEFGARMITIDGKQIKLQIWDTAGQEAFRSIT--------RSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS 169 (245)
Q Consensus 98 ig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~ 169 (245)
++.++....+.+++ +.+.||||+|++.+...+ ..+++.+|++++|+|++++.+++.+..+...+... .
T Consensus 267 tT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~ 342 (476)
T 3gee_A 267 TTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH--P 342 (476)
T ss_dssp ------CEEEEETT--EEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--T
T ss_pred ceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc--C
Confidence 33444445556665 569999999998766543 33789999999999999988775433332222222 2
Q ss_pred CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
++|+++|+||+|+....... ...+......+++++||++|.|++++|+++.+.+.
T Consensus 343 ~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 343 AAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred CCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 68999999999997554321 23343332468999999999999999999998875
No 134
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.62 E-value=7.8e-17 Score=125.42 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=77.5
Q ss_pred eEEEEEEEcCCChhhhhhhhHhhccC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHhh----cCCCCeEEEEEeCCCC
Q psy13390 112 KQIKLQIWDTAGQEAFRSITRSYYRG----AAGALLVYDIT-RRETFNHLTTWLEDARQH----SNSNMVIMLIGNKSDL 182 (245)
Q Consensus 112 ~~~~~~l~Dt~G~~~~~~~~~~~~~~----~d~vi~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~piivv~nK~Dl 182 (245)
....+.+|||+|++.++..+..+++. +|++++|||++ ++.++.....|+..+... ...++|+++|+||+|+
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 34569999999999999988888887 99999999999 888999888888887654 2357999999999999
Q ss_pred ccCcccC------HHHHHHHHHHcCCcEEEeccCCCCC
Q psy13390 183 DARREVK------KEEGEVFAREHGLVFMETSAKLATN 214 (245)
Q Consensus 183 ~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~~~ 214 (245)
...+.+. .+++..++...+++++++||++|.+
T Consensus 133 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 133 FTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 7655433 4556667777777899999998775
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.61 E-value=1.9e-15 Score=129.72 Aligned_cols=122 Identities=22% Similarity=0.179 Sum_probs=84.2
Q ss_pred CcceeeEEEEEECCeEEEEEEEcCCChhh---------hhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC
Q psy13390 98 GGVEFGARMITIDGKQIKLQIWDTAGQEA---------FRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN 168 (245)
Q Consensus 98 ig~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~ 168 (245)
++.++....+.+++. .+.+|||||++. +...+..++++||++++|+|++++.+..+ .++..+...
T Consensus 35 ~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~-- 108 (439)
T 1mky_A 35 VTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK-- 108 (439)
T ss_dssp ---CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH--
T ss_pred CccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--
Confidence 334444555666665 489999999764 34566789999999999999987655433 222222222
Q ss_pred CCCeEEEEEeCCCCccCcccCHHHH-HHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390 169 SNMVIMLIGNKSDLDARREVKKEEG-EVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEK 229 (245)
Q Consensus 169 ~~~piivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 229 (245)
.++|+++|+||+|+.... ..+. ..+. .+++ +++++||++|.|++++|+++.+.+.+.
T Consensus 109 ~~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 109 STVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp HTCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence 258999999999985320 1222 3333 4566 689999999999999999999988653
No 136
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.60 E-value=7.1e-15 Score=129.59 Aligned_cols=113 Identities=24% Similarity=0.297 Sum_probs=92.3
Q ss_pred CCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccC
Q psy13390 110 DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVK 189 (245)
Q Consensus 110 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~ 189 (245)
++..+.++||||||+.+|...+..+++.+|++++|+|++++.+.+....|..... .++|+++|+||+|+...+ .
T Consensus 69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~ 142 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--V 142 (600)
T ss_dssp TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--H
T ss_pred CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--H
Confidence 4667899999999999999999999999999999999999888888777765432 368999999999996543 2
Q ss_pred HHHHHHHHHHcCC---cEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 190 KEEGEVFAREHGL---VFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 190 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
.+....+....++ +++++||++|.|++++|+++.+.+..
T Consensus 143 ~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 143 DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 2334555555666 48999999999999999999887753
No 137
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.60 E-value=5.2e-16 Score=131.76 Aligned_cols=120 Identities=12% Similarity=0.098 Sum_probs=90.1
Q ss_pred ceeeEEEEEECCeEEEEEEEcCCChhhhhhh-------hHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe
Q psy13390 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSI-------TRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172 (245)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 172 (245)
.+.....+.+.+.. .+.||||+|++.+..+ +..+++.+|++++|+|++.. .....|+..+... ++|
T Consensus 70 ~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~p 142 (423)
T 3qq5_A 70 TDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIP 142 (423)
T ss_dssp CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCC
T ss_pred eeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCC
Confidence 33444455555442 7999999999877654 35589999999999999433 2335566666554 589
Q ss_pred EEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 173 iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
+++|+||+|+...+.. +....++..++++++++||++|.|++++|+++.+.+.+
T Consensus 143 iIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 143 FVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp EEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred EEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 9999999999765543 55566666678899999999999999999999988844
No 138
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.59 E-value=9.2e-16 Score=123.69 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=84.2
Q ss_pred cceeeEEEEEECCeEEEEEEEcCCChhhhhh----------hhHhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy13390 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRS----------ITRSYY--RGAAGALLVYDITRRETFNHLTTWLEDARQH 166 (245)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~ 166 (245)
+.+.....+...+ ..+.+|||||+..+.. .+..|+ +.+|++++|+|+++.++... |...+...
T Consensus 37 t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~ 111 (274)
T 3i8s_A 37 TVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLY---LTLQLLEL 111 (274)
T ss_dssp SSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH
T ss_pred eEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHH---HHHHHHhc
Confidence 3344444444444 4688999999877652 233343 79999999999998654433 33334333
Q ss_pred cCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390 167 SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 167 ~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i 226 (245)
++|+++|+||+|+...+.+. .....++..++++++++||++|.|++++|+++.+.+
T Consensus 112 ---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 112 ---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp ---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred ---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 58999999999986443322 224556777899999999999999999999987765
No 139
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.59 E-value=3.1e-15 Score=122.08 Aligned_cols=109 Identities=17% Similarity=0.088 Sum_probs=78.9
Q ss_pred eEEEEEEEcCCChhh--------hhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHH-HHHHhhcCCCCeEEEEEeCCCC
Q psy13390 112 KQIKLQIWDTAGQEA--------FRSITRSYYRGAAGALLVYDITRRETFNHLTTWL-EDARQHSNSNMVIMLIGNKSDL 182 (245)
Q Consensus 112 ~~~~~~l~Dt~G~~~--------~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~piivv~nK~Dl 182 (245)
...++.||||||+.. +......+++.+|++++|+|++++.+..+ .|+ ..+.... .++|+++|+||+|+
T Consensus 53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~-~~~p~ilV~NK~Dl 129 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLV-GKVPILLVGNKLDA 129 (301)
T ss_dssp TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGT-TTSCEEEEEECGGG
T ss_pred CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhc-CCCCEEEEEECccc
Confidence 346799999999865 45566778999999999999998755443 343 4444432 46899999999998
Q ss_pred ccCcc-cCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390 183 DARRE-VKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 183 ~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i 226 (245)
..... + .+....+ ....+++++||++|.|++++|+++.+.+
T Consensus 130 ~~~~~~~-~~~~~~~--~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 130 AKYPEEA-MKAYHEL--LPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp CSSHHHH-HHHHHHT--STTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCchHHH-HHHHHHh--cCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 64332 1 1222222 1234689999999999999999998765
No 140
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.59 E-value=5.7e-15 Score=118.87 Aligned_cols=126 Identities=21% Similarity=0.133 Sum_probs=92.7
Q ss_pred CCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhh------hhHhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy13390 95 SSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRS------ITRSYY--RGAAGALLVYDITRRETFNHLTTWLEDARQH 166 (245)
Q Consensus 95 ~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~ 166 (245)
.|+++.+.....+.+.+. .+.+|||||+..+.. .++.|+ .++|++++|+|+++.. ....|...+...
T Consensus 33 ~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~ 107 (271)
T 3k53_A 33 WPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEM 107 (271)
T ss_dssp CTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT
T ss_pred CCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhc
Confidence 445556665556666664 499999999987765 566666 7899999999998753 333344444433
Q ss_pred cCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 167 SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 167 ~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
. ..|+++|+||+|+...+.+... ...+...++++++++||++|.|++++|+++.+.+..
T Consensus 108 ~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 108 E--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp T--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred C--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 2 3899999999998644333322 566777889999999999999999999999887643
No 141
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.59 E-value=7e-16 Score=132.31 Aligned_cols=127 Identities=14% Similarity=0.040 Sum_probs=80.6
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChh--------hhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHH
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQE--------AFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA 163 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~ 163 (245)
..+.++.|.+++.....+......+.+|||+|++ .+...+..+++.||+++||+|++++.+..+ .|+..+
T Consensus 29 ~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~ 106 (436)
T 2hjg_A 29 SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKI 106 (436)
T ss_dssp C-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHH
T ss_pred eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHH
Confidence 3456778888777777776666789999999985 667778889999999999999998766554 333333
Q ss_pred HhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 164 ~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
.. ..++|+++|+||+|+...... ...+. .+++ +++++||++|.|++++++++.+.+.
T Consensus 107 l~--~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 107 LY--RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp HT--TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred HH--HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 32 246899999999998643211 11122 3455 6899999999999999999988775
No 142
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.57 E-value=2.9e-14 Score=119.18 Aligned_cols=114 Identities=17% Similarity=0.187 Sum_probs=88.5
Q ss_pred EEEEEEEcCCChhhhh---------hhhHhhccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q psy13390 113 QIKLQIWDTAGQEAFR---------SITRSYYRGAAGALLVYDITRRE--TFNHLTTWLEDARQHSNSNMVIMLIGNKSD 181 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~---------~~~~~~~~~~d~vi~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piivv~nK~D 181 (245)
...+.+|||+|..... .....+...+|++++|+|++++. +++....|+..+.... .+.|+++|+||+|
T Consensus 213 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~D 291 (357)
T 2e87_A 213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKID 291 (357)
T ss_dssp TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTT
T ss_pred CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcc
Confidence 3569999999985431 11223456799999999998876 6787788888887655 2789999999999
Q ss_pred CccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390 182 LDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 229 (245)
Q Consensus 182 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 229 (245)
+.....+ ++...++...+++++++||++|.|++++|+++.+.+...
T Consensus 292 l~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 292 VADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TCCHHHH--HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred cCChHHH--HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 8654322 445556667788999999999999999999999988654
No 143
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.56 E-value=4.6e-14 Score=121.80 Aligned_cols=123 Identities=22% Similarity=0.141 Sum_probs=89.7
Q ss_pred CCCcceeeEEEEEECCeEEEEEEEcCCChh-hhhh--------hhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy13390 96 SGGGVEFGARMITIDGKQIKLQIWDTAGQE-AFRS--------ITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH 166 (245)
Q Consensus 96 ~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~-~~~~--------~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~ 166 (245)
|+...++....+.+++. .+.||||+|++ .+.. ....+++.+|++|+|+|++++.++++.. +++.+
T Consensus 275 ~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l--- 348 (482)
T 1xzp_A 275 PGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI--- 348 (482)
T ss_dssp SCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH---
T ss_pred CCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh---
Confidence 33444555566667664 58999999998 5532 2346899999999999999887776543 23322
Q ss_pred cCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390 167 SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 229 (245)
Q Consensus 167 ~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 229 (245)
.++|+++|+||+|+... +..++...+.. .+++++++||++|.|++++|+++.+.+...
T Consensus 349 --~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~~~ 406 (482)
T 1xzp_A 349 --KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQEI 406 (482)
T ss_dssp --TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTHHH
T ss_pred --cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 36899999999999643 34444444432 446899999999999999999999987643
No 144
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.53 E-value=3.3e-14 Score=124.15 Aligned_cols=69 Identities=25% Similarity=0.246 Sum_probs=57.1
Q ss_pred eEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q psy13390 112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDA 184 (245)
Q Consensus 112 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 184 (245)
..+.++||||||+.+|...+..+++.+|++|+|+|++++.+.+....|. .+.. .++|+++|+||+|+..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCC
T ss_pred CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCcc
Confidence 4567999999999999999999999999999999999887777655443 2332 4689999999999864
No 145
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.53 E-value=5e-14 Score=119.61 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=86.9
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccC--H
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVK--K 190 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~ 190 (245)
...+.||||||+++|...+..++..+|++++|+|++++.++.....|+..+.... ..|+++|+||+|+....... .
T Consensus 74 ~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~ 151 (403)
T 3sjy_A 74 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQY 151 (403)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred cceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHH
Confidence 4679999999999999999999999999999999998876777777776665543 25899999999986432111 1
Q ss_pred HHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 191 EEGEVFAREH---GLVFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 191 ~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
++...+.... +++++++||++|.|++++|+++.+.+.
T Consensus 152 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 152 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 2222222221 568999999999999999999987663
No 146
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.52 E-value=1.8e-14 Score=119.33 Aligned_cols=111 Identities=14% Similarity=0.194 Sum_probs=87.9
Q ss_pred EEEEEEcCCChhh----hhhhhHhhc---cCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCC
Q psy13390 114 IKLQIWDTAGQEA----FRSITRSYY---RGAAGALLVYDITR---RETFNHLTTWLEDARQHSN--SNMVIMLIGNKSD 181 (245)
Q Consensus 114 ~~~~l~Dt~G~~~----~~~~~~~~~---~~~d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~D 181 (245)
..+.||||+|... +..+...|+ +.++++|+|+|+++ +.+++++..|+.++..+.. .++|+++|+||+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 4699999999754 333445454 45999999999998 7889999999998887653 4799999999999
Q ss_pred CccCcccCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 182 LDARREVKKEEGEVFAREHG--LVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 182 l~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
+...+ +....+...+. .+++++||+++.|++++|+++.+.+.+
T Consensus 286 l~~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 286 MPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp STTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred CCCCH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 86432 34555666665 689999999999999999999988754
No 147
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.51 E-value=2.2e-13 Score=115.81 Aligned_cols=109 Identities=20% Similarity=0.192 Sum_probs=75.5
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcc-
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR----ETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARRE- 187 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~- 187 (245)
...+.||||||++.|...+...+..+|++++|+|++++ .+++.+. .+... ...|+++++||+|+.....
T Consensus 80 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l--~~~~iivv~NK~Dl~~~~~~ 153 (408)
T 1s0u_A 80 LRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL--GIDKIIIVQNKIDLVDEKQA 153 (408)
T ss_dssp EEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT--TCCCEEEEEECTTSSCTTTT
T ss_pred ccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc--CCCeEEEEEEccCCCCHHHH
Confidence 36899999999999988777788899999999999964 3443332 22222 2358999999999965432
Q ss_pred -cCHHHHHHHHHH---cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 188 -VKKEEGEVFARE---HGLVFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 188 -~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
...++...++.. .+++++++||++|.|++++++++.+.+.
T Consensus 154 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 154 EENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp TTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 233455555543 3578999999999999999999987653
No 148
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.51 E-value=2.5e-14 Score=111.17 Aligned_cols=59 Identities=44% Similarity=0.622 Sum_probs=54.4
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|++|||||+||.+.|+|+.+++..+|+.+++.|+||||++|.||+++|..+++.+...
T Consensus 119 ~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 119 VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 177 (216)
T ss_dssp SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC---
T ss_pred CeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 58999999999999999999999999999999999999999999999999999988654
No 149
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.50 E-value=4.1e-14 Score=115.51 Aligned_cols=97 Identities=20% Similarity=0.119 Sum_probs=79.4
Q ss_pred hhhhhhhhHhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccC-HHHHHHHHHHcC
Q psy13390 124 QEAFRSITRSYYRGAAGALLVYDITRRE-TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVK-KEEGEVFAREHG 201 (245)
Q Consensus 124 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 201 (245)
+++++.+.+.+++++|++++|+|++++. +++.+..|+..+.. .++|+++|+||+|+.+...+. .++...++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 6788888888999999999999999986 88888899886654 468999999999986433222 344555666778
Q ss_pred CcEEEeccCCCCCHHHHHHHHH
Q psy13390 202 LVFMETSAKLATNVEEAFIDTA 223 (245)
Q Consensus 202 ~~~~~~Sa~~~~~i~~~~~~i~ 223 (245)
++++++||++|.|++++|..+.
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHhhcc
Confidence 9999999999999999998764
No 150
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.50 E-value=4.1e-14 Score=122.78 Aligned_cols=119 Identities=13% Similarity=0.053 Sum_probs=78.4
Q ss_pred CcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHH------HHHHHHHHHhhcCCCC
Q psy13390 98 GGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH------LTTWLEDARQHSNSNM 171 (245)
Q Consensus 98 ig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~ 171 (245)
.|.++......+......+.||||||+++|...+..+++.+|++|+|+|++++.++.. ....+. +.... ...
T Consensus 95 ~GiTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~-~~~~~-~~~ 172 (483)
T 3p26_A 95 RGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASSL-GIH 172 (483)
T ss_dssp CCSSCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHH-HHHHT-TCC
T ss_pred cCcceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHH-HHHHc-CCC
Confidence 3555555555565666789999999999999999999999999999999998754322 112122 22222 234
Q ss_pred eEEEEEeCCCCccCcccCHH----HHHHHHHHc-----CCcEEEeccCCCCCHHHH
Q psy13390 172 VIMLIGNKSDLDARREVKKE----EGEVFAREH-----GLVFMETSAKLATNVEEA 218 (245)
Q Consensus 172 piivv~nK~Dl~~~~~~~~~----~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~ 218 (245)
|+++|+||+|+.+.+....+ +...+.... +++++++||++|.|+.++
T Consensus 173 ~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 173 NLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred cEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 69999999999753322222 223333333 357999999999999853
No 151
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.50 E-value=6e-14 Score=120.21 Aligned_cols=118 Identities=20% Similarity=0.185 Sum_probs=79.1
Q ss_pred ceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhh---HH---HHHHHHHHHHhhcCCCCe-
Q psy13390 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRET---FN---HLTTWLEDARQHSNSNMV- 172 (245)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p- 172 (245)
.++......+......+.||||||+++|...+..+++.+|++++|+|++++.. |+ .....+..+.. .++|
T Consensus 81 iTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~ 157 (439)
T 3j2k_7 81 KTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKH 157 (439)
T ss_pred ceEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCe
Confidence 33333334444445689999999999999988889999999999999998642 11 11222222222 3466
Q ss_pred EEEEEeCCCCccCc------ccCHHHHHHHHHHcC------CcEEEeccCCCCCHHHHHH
Q psy13390 173 IMLIGNKSDLDARR------EVKKEEGEVFAREHG------LVFMETSAKLATNVEEAFI 220 (245)
Q Consensus 173 iivv~nK~Dl~~~~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~ 220 (245)
+++++||+|+.... ....++...+....+ ++++++||++|.|+.++++
T Consensus 158 iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 158 LIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99999999985321 111233344444444 4699999999999999765
No 152
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.49 E-value=2.4e-13 Score=117.77 Aligned_cols=113 Identities=18% Similarity=0.124 Sum_probs=84.4
Q ss_pred EEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q psy13390 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR---ETFNHLTTWLEDARQHSNSNMVIMLIGNKSDL 182 (245)
Q Consensus 106 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 182 (245)
.+.+++ ..+.||||||++.|...+..++..+|++++|+|++++ .+.+.+ ..+.. .++|+++|+||+|+
T Consensus 67 ~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~---~~ip~IvviNK~Dl 137 (482)
T 1wb1_A 67 AFKLEN--YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM----LILDH---FNIPIIVVITKSDN 137 (482)
T ss_dssp EEEETT--EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH----HHHHH---TTCCBCEEEECTTS
T ss_pred EEEECC--EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH----HHHHH---cCCCEEEEEECCCc
Confidence 344444 5799999999999988888899999999999999983 343332 22222 35888999999998
Q ss_pred ccCcc--cCHHHHHHHHHHc----CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 183 DARRE--VKKEEGEVFAREH----GLVFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 183 ~~~~~--~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
..... ...++...+.... .++++++||++|.|++++++++.+.+.
T Consensus 138 ~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 138 AGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 64221 1223444555444 568999999999999999999998875
No 153
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.48 E-value=9.5e-14 Score=117.61 Aligned_cols=124 Identities=19% Similarity=0.121 Sum_probs=86.8
Q ss_pred cceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEE
Q psy13390 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV-IMLIG 177 (245)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~ 177 (245)
|.++......+......+.||||||+++|...+..+++.+|++|+|+|++++...+.... +..+.. .++| +++++
T Consensus 51 giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~-l~~~~~---~~vp~iivvi 126 (397)
T 1d2e_A 51 GITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREH-LLLARQ---IGVEHVVVYV 126 (397)
T ss_dssp TEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHH-HHHHHH---TTCCCEEEEE
T ss_pred CcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCeEEEEE
Confidence 334433344455555679999999999998888889999999999999998654443333 233332 3578 78999
Q ss_pred eCCCCccCcc---cCHHHHHHHHHHcC-----CcEEEeccCCCCC----------HHHHHHHHHHHH
Q psy13390 178 NKSDLDARRE---VKKEEGEVFAREHG-----LVFMETSAKLATN----------VEEAFIDTAKEI 226 (245)
Q Consensus 178 nK~Dl~~~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~----------i~~~~~~i~~~i 226 (245)
||+|+..... ...++.+.++...+ ++++++||++|.| +.++++.+.+.+
T Consensus 127 NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 127 NKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp ECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred ECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 9999864221 12234555666655 5899999999775 778887776655
No 154
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.48 E-value=9.2e-14 Score=116.40 Aligned_cols=117 Identities=8% Similarity=-0.049 Sum_probs=84.5
Q ss_pred EEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEe-CCCCcc
Q psy13390 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVI-MLIGN-KSDLDA 184 (245)
Q Consensus 107 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ivv~n-K~Dl~~ 184 (245)
..+......+.||||||+++|.......++.+|++++|+| ++. .+.....++..+... ++|. ++++| |+|+ +
T Consensus 53 ~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g-~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~ 126 (370)
T 2elf_A 53 YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQG-LDAHTGECIIALDLL---GFKHGIIALTRSDST-H 126 (370)
T ss_dssp EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC-CCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-C
T ss_pred EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC-CcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-C
Confidence 3455455579999999999998877788899999999999 543 334445555544433 4677 88899 9998 4
Q ss_pred CcccCH--HHHHHHHHHc---CCcEEE--eccCC---CCCHHHHHHHHHHHHHHH
Q psy13390 185 RREVKK--EEGEVFAREH---GLVFME--TSAKL---ATNVEEAFIDTAKEIYEK 229 (245)
Q Consensus 185 ~~~~~~--~~~~~~~~~~---~~~~~~--~Sa~~---~~~i~~~~~~i~~~i~~~ 229 (245)
.+.+.. ++...+.... .+++++ +||++ |.|++++++.+.+.+...
T Consensus 127 ~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 127 MHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcccc
Confidence 322211 3444444433 368999 99999 999999999999887654
No 155
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.48 E-value=5.2e-14 Score=119.58 Aligned_cols=112 Identities=18% Similarity=0.149 Sum_probs=79.9
Q ss_pred cceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEE
Q psy13390 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV-IMLIG 177 (245)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~ 177 (245)
|.++......+......+.||||||+++|...+..+++.+|++|+|+|++++...+ ...|+..+... ++| +++++
T Consensus 60 GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~---~ip~iivvi 135 (405)
T 2c78_A 60 GITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV---GVPYIVVFM 135 (405)
T ss_dssp TCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT---TCCCEEEEE
T ss_pred CCCEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEE
Confidence 33343444455555567999999999999888888999999999999999875443 34455544433 478 89999
Q ss_pred eCCCCccCcc---cCHHHHHHHHHHcC-----CcEEEeccCCCCC
Q psy13390 178 NKSDLDARRE---VKKEEGEVFAREHG-----LVFMETSAKLATN 214 (245)
Q Consensus 178 nK~Dl~~~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~ 214 (245)
||+|+..... ...++...+....+ ++++++||++|.|
T Consensus 136 NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 136 NKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp ECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred ECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 9999864221 11234555665555 6799999999987
No 156
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.48 E-value=3.3e-14 Score=107.84 Aligned_cols=105 Identities=9% Similarity=-0.010 Sum_probs=69.3
Q ss_pred cCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHH---HHhhc--CCCCeEEEEEeCC-CCccCcccCHHHH
Q psy13390 120 DTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED---ARQHS--NSNMVIMLIGNKS-DLDARREVKKEEG 193 (245)
Q Consensus 120 Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~---~~~~~--~~~~piivv~nK~-Dl~~~~~~~~~~~ 193 (245)
|.+|++.++.+|+.||+++|++|||+|++|.+.++ ....+.+ +.... ..++|++|++||. |++. ..+..+.
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI 184 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYL 184 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHH
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHH
Confidence 35699999999999999999999999999876544 4444422 22222 1579999999995 7753 3344443
Q ss_pred HHHHH----HcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 194 EVFAR----EHGLVFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 194 ~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
..... .+.+.+..|||++|+|+.+.++|+.+.+.
T Consensus 185 ~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 185 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 33211 24566899999999999999999987763
No 157
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.48 E-value=2.2e-14 Score=123.74 Aligned_cols=127 Identities=14% Similarity=0.041 Sum_probs=81.8
Q ss_pred CCCCCCCcceeeEEEEEECCeEEEEEEEcCCC--------hhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHH
Q psy13390 92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAG--------QEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA 163 (245)
Q Consensus 92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G--------~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~ 163 (245)
..+.++.|.++......+......+.+|||+| ++.+...+..+++.+|++|||+|..++.+.. ..|+..+
T Consensus 49 ~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~--d~~l~~~ 126 (456)
T 4dcu_A 49 SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA--DEEVAKI 126 (456)
T ss_dssp C-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH--HHHHHHH
T ss_pred cccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH--HHHHHHH
Confidence 34566778888888877777777899999999 7788888899999999999999988754333 2333333
Q ss_pred HhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 164 ~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
... .++|+++|+||+|+.... .....+. ..++ +.+++||++|.|+.++++.+.+.+.
T Consensus 127 l~~--~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 127 LYR--TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp HTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred HHH--cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccchHHHHHHHHhhcc
Confidence 332 468999999999985322 1111111 2333 4789999999999999999988764
No 158
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.47 E-value=8.2e-14 Score=119.74 Aligned_cols=122 Identities=17% Similarity=0.127 Sum_probs=80.1
Q ss_pred CCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhH--------hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy13390 95 SSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITR--------SYYRGAAGALLVYDITRRETFNHLTTWLEDARQH 166 (245)
Q Consensus 95 ~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~ 166 (245)
.|+.+.++....+.+++. .+.||||+|.+.+...++ .+++.+|++++|+|++++.+... ..|+..+
T Consensus 255 ~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l--- 328 (462)
T 3geh_A 255 LPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV--- 328 (462)
T ss_dssp CTTCCHHHHHHEEEETTE--EEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH---
T ss_pred CCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc---
Confidence 455556666666777774 589999999876654332 36889999999999998776654 3444443
Q ss_pred cCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 167 SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 167 ~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
...|+++|+||+|+....... ....+. ...+++++||++|.|++++|+++.+.+..
T Consensus 329 --~~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 329 --KHRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp --TTSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred --cCCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 236999999999997544332 111111 35679999999999999999999988754
No 159
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.47 E-value=1.5e-14 Score=123.98 Aligned_cols=110 Identities=19% Similarity=0.220 Sum_probs=78.5
Q ss_pred CCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc----CCCC-eEEEEEeCCCCcc
Q psy13390 110 DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS----NSNM-VIMLIGNKSDLDA 184 (245)
Q Consensus 110 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~-piivv~nK~Dl~~ 184 (245)
+.....+.||||||+++|...+..+++.+|++|+|+|+++ .+|+....|......+. ..++ |+++++||+|+..
T Consensus 80 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 80 ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred ecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 3344579999999999999989899999999999999998 66765433222221111 1234 6899999999865
Q ss_pred Cc------ccCHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHH
Q psy13390 185 RR------EVKKEEGEVFAREHG-----LVFMETSAKLATNVEEAFI 220 (245)
Q Consensus 185 ~~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 220 (245)
.. ....++...++...+ ++++++||++|.|+.+++.
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 21 112345566666665 6799999999999986654
No 160
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.46 E-value=6.7e-13 Score=112.91 Aligned_cols=109 Identities=18% Similarity=0.164 Sum_probs=79.6
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcc-
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR----ETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARRE- 187 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~- 187 (245)
...+.||||||++.|.......+..+|++++|+|++++ .+.+.+.. +.... ..|+++|+||+|+.....
T Consensus 82 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~--~~~iivviNK~Dl~~~~~~ 155 (410)
T 1kk1_A 82 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQIIG--QKNIIIAQNKIELVDKEKA 155 (410)
T ss_dssp EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHHT--CCCEEEEEECGGGSCHHHH
T ss_pred ccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEECccCCCHHHH
Confidence 36799999999999988777788899999999999964 33333322 22222 258999999999864321
Q ss_pred -cCHHHHHHHHHH---cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 188 -VKKEEGEVFARE---HGLVFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 188 -~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
...++...+... .+++++++||++|.|++++++++.+.+.
T Consensus 156 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 156 LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 122334444433 3578999999999999999999987654
No 161
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.45 E-value=1.4e-13 Score=117.88 Aligned_cols=109 Identities=21% Similarity=0.105 Sum_probs=78.6
Q ss_pred ECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcc-
Q psy13390 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARRE- 187 (245)
Q Consensus 109 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~- 187 (245)
+......+.||||||+++|...+..+++.+|++++|+|++++...+ ...++..+.... -.|+++|+||+|+.....
T Consensus 99 ~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 99 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLLG--IKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHTT--CCEEEEEEECTTTTTSCHH
T ss_pred eecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHcC--CCeEEEEEEcCcCCcccHH
Confidence 3444567999999999999888888999999999999999865433 233444333322 236999999999964211
Q ss_pred -c--CHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHH
Q psy13390 188 -V--KKEEGEVFAREHG-----LVFMETSAKLATNVEEAFI 220 (245)
Q Consensus 188 -~--~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 220 (245)
+ ..++...++...+ ++++++||++|.|++++|.
T Consensus 176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 1 2244555666666 6799999999999998543
No 162
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.44 E-value=1.4e-14 Score=125.05 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=65.4
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCccCc--
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRE---TFNHLTTWLEDARQHSNSNMV-IMLIGNKSDLDARR-- 186 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~-- 186 (245)
...+.||||||+++|...+..+++.+|++|+|+|++++. +|+...+|...+......++| +++++||+|+....
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 457999999999999888888999999999999999863 333222233322222224577 99999999985321
Q ss_pred ----ccCHHHHHHHHHHc-------CCcEEEeccCCCCCHHHHH
Q psy13390 187 ----EVKKEEGEVFAREH-------GLVFMETSAKLATNVEEAF 219 (245)
Q Consensus 187 ----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~ 219 (245)
....++...++... .++++++||++|.|+.++|
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11123455555554 3569999999999998866
No 163
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.44 E-value=5.7e-15 Score=128.61 Aligned_cols=108 Identities=19% Similarity=0.151 Sum_probs=79.2
Q ss_pred EEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCccc-CHHHH
Q psy13390 115 KLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREV-KKEEG 193 (245)
Q Consensus 115 ~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~ 193 (245)
.+.||||||++.|..++..+++.+|++++|+|++++...+....| ..+. ..++|+++++||+|+...+.. ...+.
T Consensus 53 ~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l 128 (537)
T 3izy_P 53 KITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESI-QHAK---DAHVPIVLAINKCDKAEADPEKVKKEL 128 (537)
T ss_dssp CCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHH---TTTCCEEECCBSGGGTTTSCCSSSSHH
T ss_pred EEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHH-HHHH---HcCCcEEEEEecccccccchHHHHHHH
Confidence 489999999999999999999999999999999987665554332 2222 346899999999998643211 11111
Q ss_pred HHH---HHHc--CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390 194 EVF---AREH--GLVFMETSAKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 194 ~~~---~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~i 226 (245)
..+ +..+ .++++++||++|.|++++|+++...+
T Consensus 129 ~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 129 LAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp HHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred HhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 111 1111 24799999999999999999998765
No 164
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.43 E-value=1.8e-13 Score=126.92 Aligned_cols=128 Identities=17% Similarity=0.100 Sum_probs=87.5
Q ss_pred CCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-E
Q psy13390 95 SSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV-I 173 (245)
Q Consensus 95 ~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-i 173 (245)
+.+.|.++....+.++.....+.||||||+++|......+++.+|++|+|+|++++...+. ..++..+... ++| +
T Consensus 340 ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l---gIP~I 415 (1289)
T 3avx_A 340 EKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV---GVPYI 415 (1289)
T ss_dssp --------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH---TCSCE
T ss_pred cccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc---CCCeE
Confidence 4566777665556666666789999999999998888889999999999999998654333 3344444433 478 8
Q ss_pred EEEEeCCCCccCcc---cCHHHHHHHHHHcC-----CcEEEeccCCC--------CCHHHHHHHHHHHH
Q psy13390 174 MLIGNKSDLDARRE---VKKEEGEVFAREHG-----LVFMETSAKLA--------TNVEEAFIDTAKEI 226 (245)
Q Consensus 174 ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~--------~~i~~~~~~i~~~i 226 (245)
|+++||+|+..... ...++...+....+ ++++++||++| .|+.++|+.+.+.+
T Consensus 416 IVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 416 IVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp EEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred EEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 89999999964221 12244555666655 67999999999 45777777776644
No 165
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.42 E-value=3e-13 Score=110.39 Aligned_cols=109 Identities=17% Similarity=0.088 Sum_probs=77.1
Q ss_pred EEEEEEEcCCChh-h--------hhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390 113 QIKLQIWDTAGQE-A--------FRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD 183 (245)
Q Consensus 113 ~~~~~l~Dt~G~~-~--------~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 183 (245)
...+.+|||||+. . +......+++.+|++++|+|+++ .+ ....|+..... ..+.|+++++||+|+.
T Consensus 55 ~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~--~~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 55 AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WT--PDDEMVLNKLR--EGKAPVILAVNKVDNV 129 (301)
T ss_dssp TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CC--HHHHHHHHHHH--SSSSCEEEEEESTTTC
T ss_pred CeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CC--HHHHHHHHHHH--hcCCCEEEEEECcccC
Confidence 3579999999987 2 22334567889999999999976 33 22334333222 2468999999999986
Q ss_pred cCcccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q psy13390 184 ARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i 226 (245)
..+....+....+...+++ +++.+||++|.|++++++.+.+.+
T Consensus 130 ~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp CCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 5222223444555555666 599999999999999999988765
No 166
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.42 E-value=1.9e-12 Score=114.33 Aligned_cols=109 Identities=23% Similarity=0.169 Sum_probs=79.2
Q ss_pred EEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCccc---
Q psy13390 115 KLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITR---RETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREV--- 188 (245)
Q Consensus 115 ~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--- 188 (245)
.++||||||++.|..++..+++.+|++|+|+|+++ +.+++.+.. +.. .++|+++++||+|+......
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~ 143 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEG 143 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTT
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccC
Confidence 48999999999999999999999999999999998 555554332 222 46899999999998532110
Q ss_pred ----------CHH----------HHHHHHHHcC---------------CcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390 189 ----------KKE----------EGEVFAREHG---------------LVFMETSAKLATNVEEAFIDTAKEIYEKI 230 (245)
Q Consensus 189 ----------~~~----------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 230 (245)
..+ +........+ ++++.+||++|.|++++++++...+....
T Consensus 144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~ 220 (594)
T 1g7s_A 144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL 220 (594)
T ss_dssp CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence 000 0111111122 37999999999999999999998876443
No 167
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.41 E-value=4.8e-12 Score=105.71 Aligned_cols=126 Identities=23% Similarity=0.092 Sum_probs=86.6
Q ss_pred eeEEEEEECCeEEEEEEEcCCCh---------hhhhhhhHhhccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCC
Q psy13390 102 FGARMITIDGKQIKLQIWDTAGQ---------EAFRSITRSYYRGAAGALLVYDITRRE--TFNHLTTWLEDARQHSNSN 170 (245)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~vi~v~d~~~~~--s~~~~~~~~~~~~~~~~~~ 170 (245)
.....+.+++ ..+.+|||+|. +.+...+. .+..+|++++|+|++++. ..+....|...+......+
T Consensus 216 ~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~ 292 (364)
T 2qtf_A 216 PKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG 292 (364)
T ss_dssp SCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred CEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC
Confidence 3345566666 45899999996 22333333 688999999999999876 5555555655555544356
Q ss_pred CeEEEEEeCCCCccCccc-CHHHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREV-KKEEGEVFAREH---GLVFMETSAKLATNVEEAFIDTAKEIYEKI 230 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 230 (245)
.|+++|+||+|+...... ..+.+..++... ..+++++||++|.|++++++++.+.+....
T Consensus 293 ~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 293 KPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp CCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 899999999998643210 011222233443 236899999999999999999998776544
No 168
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.40 E-value=3.3e-14 Score=118.87 Aligned_cols=130 Identities=15% Similarity=0.226 Sum_probs=70.8
Q ss_pred CCCCcceeeEEEEEECCeEEEEEEEcCCCh-------hhhhhhhH-------hhccCC-------------cEEEEEEeC
Q psy13390 95 SSGGGVEFGARMITIDGKQIKLQIWDTAGQ-------EAFRSITR-------SYYRGA-------------AGALLVYDI 147 (245)
Q Consensus 95 ~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~~~~~~~-------~~~~~~-------------d~vi~v~d~ 147 (245)
.+|++.++....+...+..+.+.+|||+|. +.+..++. .|++.+ |+++++++.
T Consensus 76 ~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~ 155 (361)
T 2qag_A 76 ERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISP 155 (361)
T ss_dssp --CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECS
T ss_pred CCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEec
Confidence 467766665555555677789999999999 66666665 566543 345555553
Q ss_pred CChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCccCcccCH--HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q psy13390 148 TRRETFNHLT-TWLEDARQHSNSNMVIMLIGNKSDLDARREVKK--EEGEVFAREHGLVFMETSAKLATNVEEAFIDTAK 224 (245)
Q Consensus 148 ~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 224 (245)
+ ..++..+. .|+..+ ..++|+|+|+||+|+...+++.. +++..++..++++++++||++|.+ ++.|.++.+
T Consensus 156 ~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~ 229 (361)
T 2qag_A 156 F-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTR 229 (361)
T ss_dssp S-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHH
T ss_pred C-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHH
Confidence 2 33444443 333333 25789999999999976554433 456666667789999999999999 999999998
Q ss_pred HHHHHH
Q psy13390 225 EIYEKI 230 (245)
Q Consensus 225 ~i~~~~ 230 (245)
.+.+..
T Consensus 230 ~i~~~i 235 (361)
T 2qag_A 230 LLKASI 235 (361)
T ss_dssp HHHHTC
T ss_pred HHHhcC
Confidence 886643
No 169
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.39 E-value=1.6e-13 Score=118.26 Aligned_cols=107 Identities=19% Similarity=0.135 Sum_probs=74.9
Q ss_pred ECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCCe-EEEEEeCCC
Q psy13390 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRE---TFN---HLTTWLEDARQHSNSNMV-IMLIGNKSD 181 (245)
Q Consensus 109 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iivv~nK~D 181 (245)
+......+.||||||+++|...+..+++.+|++|+|+|++++. +|+ ....++..+.. .++| +++|+||+|
T Consensus 80 ~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~D 156 (458)
T 1f60_A 80 FETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMD 156 (458)
T ss_dssp EECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGG
T ss_pred EecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccc
Confidence 3344467999999999999998889999999999999999763 231 22222222222 2465 999999999
Q ss_pred CccCcc----cCHHHHHHHHHHcC-----CcEEEeccCCCCCHHHH
Q psy13390 182 LDARRE----VKKEEGEVFAREHG-----LVFMETSAKLATNVEEA 218 (245)
Q Consensus 182 l~~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 218 (245)
+.+... ...++...++...+ ++++++||++|.|+.++
T Consensus 157 l~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 157 SVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 863111 12234455555555 67999999999999754
No 170
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.36 E-value=4.7e-13 Score=107.83 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=72.4
Q ss_pred CCCCCcceeeEEEEEECCeEEEEEEEcCCChh-------hhhhhh-------Hhhcc-------------CCcEEEEEEe
Q psy13390 94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQE-------AFRSIT-------RSYYR-------------GAAGALLVYD 146 (245)
Q Consensus 94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~~~-------~~~~~-------------~~d~vi~v~d 146 (245)
..+|++.++....+..++..+.+.+|||||.. .+..+. ..|+. .+|+++++++
T Consensus 45 ~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~ 124 (274)
T 3t5d_A 45 IKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIA 124 (274)
T ss_dssp ----CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEEC
T ss_pred cCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEec
Confidence 36788888777776667777899999999972 233332 33333 3789999998
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccC--HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q psy13390 147 ITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVK--KEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAK 224 (245)
Q Consensus 147 ~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 224 (245)
.+..........++..+.. ++|+++|+||+|+....+.. .+.........+++++.+||+++.|++++++++.+
T Consensus 125 ~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~ 200 (274)
T 3t5d_A 125 PSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD 200 (274)
T ss_dssp SCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhc
Confidence 7653211222234444432 68999999999985432221 12334445567889999999999999999988876
Q ss_pred HH
Q psy13390 225 EI 226 (245)
Q Consensus 225 ~i 226 (245)
.+
T Consensus 201 ~~ 202 (274)
T 3t5d_A 201 RL 202 (274)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 171
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.8e-13 Score=121.51 Aligned_cols=120 Identities=17% Similarity=0.108 Sum_probs=78.5
Q ss_pred cceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhh---HHHHHHHHHHHHhhcCCC-CeEE
Q psy13390 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRET---FNHLTTWLEDARQHSNSN-MVIM 174 (245)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s---~~~~~~~~~~~~~~~~~~-~pii 174 (245)
|.++......+......+.||||||+++|...+..+++.+|++|+|+|++++.. +....++...+......+ .|++
T Consensus 230 GiTid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iI 309 (611)
T 3izq_1 230 GVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLI 309 (611)
T ss_dssp TTCCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEE
T ss_pred CeeEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEE
Confidence 445544444455556689999999999999988899999999999999987521 100111111111111123 4599
Q ss_pred EEEeCCCCccCcccC----HHHHHHHHHHcC-----CcEEEeccCCCCCHHHH
Q psy13390 175 LIGNKSDLDARREVK----KEEGEVFAREHG-----LVFMETSAKLATNVEEA 218 (245)
Q Consensus 175 vv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 218 (245)
+|+||+|+...+... .++...+....+ ++++++||++|.|+.++
T Consensus 310 VVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 310 IAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 999999986522211 223333444333 57999999999999876
No 172
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.36 E-value=4.9e-13 Score=106.24 Aligned_cols=104 Identities=8% Similarity=-0.021 Sum_probs=73.9
Q ss_pred CCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHH---HHHhhc--CCCCeEEEEEeC-CCCccCcccCHHHHH
Q psy13390 121 TAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE---DARQHS--NSNMVIMLIGNK-SDLDARREVKKEEGE 194 (245)
Q Consensus 121 t~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~---~~~~~~--~~~~piivv~nK-~Dl~~~~~~~~~~~~ 194 (245)
.+||+.++.+|+.||+++|++|||+|++|.+.++ ....+. .+.... ..++|++|++|| .|++. ..+..+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence 4799999999999999999999999999987554 333332 222221 257999999996 68853 33444333
Q ss_pred HHHH----HcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 195 VFAR----EHGLVFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 195 ~~~~----~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
.... .+.+.+..|||++|+|+.+.++|+.+.+.
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 2211 23466899999999999999999998774
No 173
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.33 E-value=9.1e-12 Score=99.41 Aligned_cols=124 Identities=13% Similarity=0.075 Sum_probs=76.4
Q ss_pred eeeEEEEEECCeEEEEEEEcCCChhhhh-----------hhhHhhccCCcEEEEEEeCCChhhH-HHHHHHHHHHHhhcC
Q psy13390 101 EFGARMITIDGKQIKLQIWDTAGQEAFR-----------SITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDARQHSN 168 (245)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~~~~~~~~~~d~vi~v~d~~~~~s~-~~~~~~~~~~~~~~~ 168 (245)
+.......+.+ ..+.||||||+..+. .....+++.+|++++|+|+++.... ..+..|+..+....
T Consensus 60 ~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~- 136 (260)
T 2xtp_A 60 TCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED- 136 (260)
T ss_dssp SCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-
T ss_pred eeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-
Confidence 33334445554 459999999986542 1223478999999999999862221 22223333332111
Q ss_pred CCCeEEEEEe-CCCCccCcccCH-------HHHHHHHHHcCCc---E--EEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 169 SNMVIMLIGN-KSDLDARREVKK-------EEGEVFAREHGLV---F--METSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 169 ~~~piivv~n-K~Dl~~~~~~~~-------~~~~~~~~~~~~~---~--~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
...|.++|+| |+|+... .+.. .+...+....+.. + +++||++|.|++++|.++.+.+..
T Consensus 137 ~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 137 AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 1356666666 9998643 2211 2233355544432 2 789999999999999999998865
No 174
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.33 E-value=5.3e-12 Score=113.33 Aligned_cols=80 Identities=14% Similarity=0.082 Sum_probs=60.0
Q ss_pred ceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q psy13390 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNK 179 (245)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK 179 (245)
.++......+....+.++||||+|+..|...+..+++.+|++++|+|+++....+.. .++..+.. .++|+++|+||
T Consensus 60 iti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~---~~ip~ilv~NK 135 (665)
T 2dy1_A 60 TTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER---LGLPRMVVVTK 135 (665)
T ss_dssp SCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCEEEEEEC
T ss_pred CeEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH---ccCCEEEEecC
Confidence 334344444444467899999999999998899999999999999999876554433 34444433 35899999999
Q ss_pred CCCc
Q psy13390 180 SDLD 183 (245)
Q Consensus 180 ~Dl~ 183 (245)
+|+.
T Consensus 136 iD~~ 139 (665)
T 2dy1_A 136 LDKG 139 (665)
T ss_dssp GGGC
T ss_pred Cchh
Confidence 9986
No 175
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.30 E-value=4.6e-14 Score=121.92 Aligned_cols=106 Identities=22% Similarity=0.271 Sum_probs=74.2
Q ss_pred EEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCc--ccCHH-
Q psy13390 115 KLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARR--EVKKE- 191 (245)
Q Consensus 115 ~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~- 191 (245)
.+.||||||++.|..++..++..+|++++|+|++++..-+.... +..+.. .++|+++++||+|+...+ .+..+
T Consensus 52 ~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~-l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l 127 (501)
T 1zo1_I 52 MITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEA-IQHAKA---AQVPVVVAVNKIDKPEADPDRVKNEL 127 (501)
T ss_dssp CCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHH-HHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCC
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHH-HHHHHh---cCceEEEEEEeccccccCHHHHHHHH
Confidence 58999999999999999899999999999999988432222211 122222 468999999999986421 11100
Q ss_pred -HHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHH
Q psy13390 192 -EGEVFAREHG--LVFMETSAKLATNVEEAFIDTAK 224 (245)
Q Consensus 192 -~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~ 224 (245)
+...++..++ ++++++||++|.|++++|+++..
T Consensus 128 ~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 128 SQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp CCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 0000111222 68999999999999999999864
No 176
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.30 E-value=1.2e-11 Score=108.01 Aligned_cols=87 Identities=20% Similarity=0.222 Sum_probs=58.8
Q ss_pred CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeE
Q psy13390 94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVI 173 (245)
Q Consensus 94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi 173 (245)
..++.|.++......+....+.++||||||+..|...+..+++.+|++|+|+|++++...+. ..++..+. ..++|+
T Consensus 62 ~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~---~~~ipi 137 (529)
T 2h5e_A 62 MEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR---LRDTPI 137 (529)
T ss_dssp --------CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT---TTTCCE
T ss_pred hcccCCcceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH---HcCCCE
Confidence 34455555555555555555789999999999998888889999999999999998643322 22222222 246899
Q ss_pred EEEEeCCCCcc
Q psy13390 174 MLIGNKSDLDA 184 (245)
Q Consensus 174 ivv~nK~Dl~~ 184 (245)
++++||+|+..
T Consensus 138 ivviNK~Dl~~ 148 (529)
T 2h5e_A 138 LTFMNKLDRDI 148 (529)
T ss_dssp EEEEECTTSCC
T ss_pred EEEEcCcCCcc
Confidence 99999999854
No 177
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.30 E-value=1e-11 Score=97.91 Aligned_cols=124 Identities=15% Similarity=0.073 Sum_probs=78.0
Q ss_pred eeeEEEEEECCeEEEEEEEcCCCh-----------hhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-
Q psy13390 101 EFGARMITIDGKQIKLQIWDTAGQ-----------EAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN- 168 (245)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~Dt~G~-----------~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~- 168 (245)
+.......+.+. .+.||||||. +.+...+..+++++|++|+|+|++..... ...|+..+.....
T Consensus 67 ~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~ 142 (239)
T 3lxx_A 67 KCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGE 142 (239)
T ss_dssp SCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHH
T ss_pred eEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhh
Confidence 333344455554 6899999993 34555566678899999999998753331 1223333322110
Q ss_pred -CCCeEEEEEeCCCCccCcccC------HHHHHHHHHHcCCcEEEeccCCC-----CCHHHHHHHHHHHHHH
Q psy13390 169 -SNMVIMLIGNKSDLDARREVK------KEEGEVFAREHGLVFMETSAKLA-----TNVEEAFIDTAKEIYE 228 (245)
Q Consensus 169 -~~~piivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~-----~~i~~~~~~i~~~i~~ 228 (245)
...|+++|+||+|+...+.+. .+....+....+..++.+++..+ .++.++|..+...+.+
T Consensus 143 ~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 143 RARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 236999999999986544332 13566777777878887776644 6888888887776643
No 178
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.29 E-value=6.9e-12 Score=97.04 Aligned_cols=59 Identities=39% Similarity=0.509 Sum_probs=54.7
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|++|||||+||.+.+.+..+++..++..+++.|+++||++|.||+++|..+++.+...
T Consensus 146 ~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 146 IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp SCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 58999999999988888999999999999999999999999999999999999988654
No 179
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.29 E-value=1.8e-12 Score=105.55 Aligned_cols=113 Identities=12% Similarity=0.025 Sum_probs=77.7
Q ss_pred EEEEEEcCCChh-------------hhhhhhHhhccCCcEEE-EEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q psy13390 114 IKLQIWDTAGQE-------------AFRSITRSYYRGAAGAL-LVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNK 179 (245)
Q Consensus 114 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~vi-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK 179 (245)
..+.||||||.. .+..++..|++.++.++ +|+|+++..+.++...++..+. ..+.|+++|+||
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~---~~~~~~i~V~NK 201 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITK 201 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC---TTCSSEEEEEEC
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC---CCCCeEEEEEEc
Confidence 569999999963 45567778999998776 7999987655544434444443 246899999999
Q ss_pred CCCccCcccCHHHHHHHHHH--cC-CcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390 180 SDLDARREVKKEEGEVFARE--HG-LVFMETSAKLATNVEEAFIDTAKEIYEK 229 (245)
Q Consensus 180 ~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 229 (245)
+|+........+........ .+ .+++++||++|.|++++|+++.+...-.
T Consensus 202 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~ 254 (299)
T 2aka_B 202 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFF 254 (299)
T ss_dssp GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred cccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHHHH
Confidence 99975443222222210001 12 3578899999999999999998855433
No 180
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.28 E-value=1.8e-12 Score=98.57 Aligned_cols=75 Identities=20% Similarity=0.299 Sum_probs=62.4
Q ss_pred eEEEEEEEcCCChhhhhhhhHhhccC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHhhc----CCCCeEEEEEeCCCC
Q psy13390 112 KQIKLQIWDTAGQEAFRSITRSYYRG----AAGALLVYDIT-RRETFNHLTTWLEDARQHS----NSNMVIMLIGNKSDL 182 (245)
Q Consensus 112 ~~~~~~l~Dt~G~~~~~~~~~~~~~~----~d~vi~v~d~~-~~~s~~~~~~~~~~~~~~~----~~~~piivv~nK~Dl 182 (245)
..+.+.+|||+|++.+...+..++.. +|++++|||++ +..++.....|+..+.... ..++|+++|+||+|+
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 168 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 168 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence 34569999999999988888777776 89999999999 8999999888887776542 257999999999999
Q ss_pred ccCc
Q psy13390 183 DARR 186 (245)
Q Consensus 183 ~~~~ 186 (245)
...+
T Consensus 169 ~~~~ 172 (193)
T 2ged_A 169 FTAR 172 (193)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 7544
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.24 E-value=2.5e-11 Score=109.34 Aligned_cols=68 Identities=24% Similarity=0.333 Sum_probs=57.5
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDA 184 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 184 (245)
.+.++||||+|+..|...+..+++.+|++|+|+|++++.+.+....|.. +.. .++|+++|+||+|+..
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 4679999999999999999999999999999999999888777665543 333 3589999999999854
No 182
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.21 E-value=1.2e-10 Score=105.03 Aligned_cols=69 Identities=23% Similarity=0.256 Sum_probs=56.0
Q ss_pred eEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q psy13390 112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDA 184 (245)
Q Consensus 112 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 184 (245)
..+.++||||||+.+|...+..+++.+|++|+|+|+++....+....|.. +.. .++|+++|+||+|+..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCEEEEEeCCCccc
Confidence 44889999999999999899999999999999999998766655444432 222 3689999999999853
No 183
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.20 E-value=2.7e-13 Score=120.07 Aligned_cols=115 Identities=25% Similarity=0.202 Sum_probs=57.7
Q ss_pred cceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCCe
Q psy13390 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRE---TF---NHLTTWLEDARQHSNSNMV 172 (245)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p 172 (245)
|.++......+......+.||||||+++|...+..+++.+|++|+|+|++++. .+ ......+..+.. .++|
T Consensus 240 GiTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip 316 (592)
T 3mca_A 240 GVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGIS 316 (592)
T ss_dssp -------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCC
T ss_pred CeeEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCC
Confidence 44444444445555678999999999999888888899999999999998642 11 011111222222 2465
Q ss_pred -EEEEEeCCCCccCccc----CHHHHHHHH-HHcCC-----cEEEeccCCCCCHH
Q psy13390 173 -IMLIGNKSDLDARREV----KKEEGEVFA-REHGL-----VFMETSAKLATNVE 216 (245)
Q Consensus 173 -iivv~nK~Dl~~~~~~----~~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~ 216 (245)
+|+|+||+|+.....- ..++...+. ...++ +++++||++|.|+.
T Consensus 317 ~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 317 EIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp CEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred eEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 9999999998642110 112233333 33454 69999999999998
No 184
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.20 E-value=6e-11 Score=93.98 Aligned_cols=130 Identities=14% Similarity=0.078 Sum_probs=76.7
Q ss_pred cceeeEEEEEECCeEEEEEEEcCCCh--------hhhhhhhHhh----ccCCcEEEEEEeCCChhhH-HHHHHHHHHHHh
Q psy13390 99 GVEFGARMITIDGKQIKLQIWDTAGQ--------EAFRSITRSY----YRGAAGALLVYDITRRETF-NHLTTWLEDARQ 165 (245)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~~~----~~~~d~vi~v~d~~~~~s~-~~~~~~~~~~~~ 165 (245)
|.+.......+......+.||||||. +.+......+ .+++|++|+|+|++..... ..+..|+..+..
T Consensus 55 ~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~ 134 (247)
T 3lxw_A 55 SVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFG 134 (247)
T ss_dssp --CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHC
T ss_pred CccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 34443333333333456999999996 3333323333 3999999999999852111 122223333221
Q ss_pred hcCCCCeEEEEEeCCCCccCcc---c---CHHHHHHHHHHcCCcEEEeccCC-----CCCHHHHHHHHHHHHHH
Q psy13390 166 HSNSNMVIMLIGNKSDLDARRE---V---KKEEGEVFAREHGLVFMETSAKL-----ATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 166 ~~~~~~piivv~nK~Dl~~~~~---~---~~~~~~~~~~~~~~~~~~~Sa~~-----~~~i~~~~~~i~~~i~~ 228 (245)
....+.|+++++||+|+..... + ..+....+....+..++..++.. +.|+.++++.+.+.+.+
T Consensus 135 ~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 135 EDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp GGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 1112689999999999864321 0 01335666677777777666554 57899999888877754
No 185
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.20 E-value=4.7e-11 Score=91.90 Aligned_cols=126 Identities=13% Similarity=0.113 Sum_probs=77.5
Q ss_pred CCCCCCcceeeEEEEEECCeEEEEEEEcCCChh----------hhhhhhHhhc---cCCcEEEEEEeCCChhhHHH--HH
Q psy13390 93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQE----------AFRSITRSYY---RGAAGALLVYDITRRETFNH--LT 157 (245)
Q Consensus 93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~~---~~~d~vi~v~d~~~~~s~~~--~~ 157 (245)
.+.|+.|.++....+.+++ .+.+|||+|.. .++.....++ +.++++++++|++++.+..+ +.
T Consensus 54 ~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~ 130 (210)
T 1pui_A 54 RTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMI 130 (210)
T ss_dssp ---------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHH
T ss_pred cccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHH
Confidence 4478888887655555544 47899999973 2333333444 57899999999998665432 22
Q ss_pred HHHHHHHhhcCCCCeEEEEEeCCCCccCcc--cCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 158 TWLEDARQHSNSNMVIMLIGNKSDLDARRE--VKKEEGEVFAREHG--LVFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 158 ~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
.|+. . .+.|+++++||+|+..... .....++.++...+ +.++++||+++.|++++++++.+.+.
T Consensus 131 ~~~~---~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 131 EWAV---D---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHH---H---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHH---H---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 2322 1 3589999999999854211 11233444444443 46889999999999999999887653
No 186
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.19 E-value=7.2e-11 Score=87.91 Aligned_cols=60 Identities=40% Similarity=0.520 Sum_probs=55.3
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~ 60 (245)
+|+++||||+|+.+.+.+..+++..++..++.+++++||++|.||+++|..+++.+....
T Consensus 112 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 112 VPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRR 171 (175)
T ss_dssp CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 589999999999888889999999999999999999999999999999999999886543
No 187
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.17 E-value=8e-11 Score=89.59 Aligned_cols=60 Identities=38% Similarity=0.510 Sum_probs=54.8
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~ 60 (245)
+|++|||||+||...+.+..+++..++..+++.|+++||++|.||+++|..+++.+....
T Consensus 115 ~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence 589999999999888889999999999999999999999999999999999999986543
No 188
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.17 E-value=7.4e-11 Score=87.41 Aligned_cols=58 Identities=40% Similarity=0.511 Sum_probs=54.7
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
+|+++||||+|+.+.+.+..+++..++...+.+++++||++|.|++++|..+++.+..
T Consensus 110 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 110 LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHh
Confidence 5899999999999889999999999999999999999999999999999999998864
No 189
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.16 E-value=7.7e-11 Score=89.91 Aligned_cols=58 Identities=40% Similarity=0.511 Sum_probs=54.3
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
+|++|||||+|+.+.+.++.+++..++..+++.++++||++|.||+++|..+++.+..
T Consensus 131 ~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 131 LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred CCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 5899999999998888899999999999999999999999999999999999998854
No 190
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.16 E-value=1.1e-10 Score=86.10 Aligned_cols=59 Identities=41% Similarity=0.530 Sum_probs=55.0
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|+++||||+|+.+.+.+..+++..++...+++++++||++|.|++++|..+++.+...
T Consensus 107 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 107 VPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp CCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999998899999999999999999999999999999999999999988653
No 191
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.15 E-value=1.5e-10 Score=104.43 Aligned_cols=68 Identities=24% Similarity=0.232 Sum_probs=56.8
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDA 184 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 184 (245)
.+.++||||+|+..|...+..+++.+|++++|+|++++.+.+....|.. +.. .++|+++|+||+|+..
T Consensus 74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 4679999999999999889999999999999999998877776655543 333 3589999999999854
No 192
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.14 E-value=8.7e-11 Score=105.92 Aligned_cols=111 Identities=12% Similarity=0.085 Sum_probs=79.1
Q ss_pred EEEEEcCCChhhh---hhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHH
Q psy13390 115 KLQIWDTAGQEAF---RSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKE 191 (245)
Q Consensus 115 ~~~l~Dt~G~~~~---~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~ 191 (245)
.+.||||||.... ...+..+++.+|++|+|+|++++.+..+...|...+.. .+.|+++|+||+|+.....++.+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~e 251 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRESLIDPD 251 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGGCSSTT
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECcccccccccChh
Confidence 5899999998653 34556789999999999999988887776655444332 35789999999998644311111
Q ss_pred ----------HHHH-----HHHH--------cCCcEEEeccC--------------CCCCHHHHHHHHHHHHHH
Q psy13390 192 ----------EGEV-----FARE--------HGLVFMETSAK--------------LATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 192 ----------~~~~-----~~~~--------~~~~~~~~Sa~--------------~~~~i~~~~~~i~~~i~~ 228 (245)
.... +... ...+++++||+ +|.|+++++..+.+.+..
T Consensus 252 e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 1111 1111 12369999999 999999999999887754
No 193
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.14 E-value=1.3e-10 Score=88.13 Aligned_cols=60 Identities=35% Similarity=0.593 Sum_probs=56.3
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~ 60 (245)
+|++|||||+|+.+.+.+..+++..++...++.++++||++|.||+++|..+++.+.++.
T Consensus 129 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 129 AQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 589999999999888899999999999999999999999999999999999999987764
No 194
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.13 E-value=1.9e-10 Score=87.24 Aligned_cols=61 Identities=84% Similarity=1.191 Sum_probs=56.5
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 61 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~ 61 (245)
+|+++|+||+|+.+.+.+..+++..++...++.++++||++|.||+++|..+++.+.+...
T Consensus 127 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 187 (191)
T 2a5j_A 127 MVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQ 187 (191)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5899999999998888899999999999999999999999999999999999999987654
No 195
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.13 E-value=2.7e-12 Score=107.49 Aligned_cols=187 Identities=14% Similarity=0.135 Sum_probs=102.3
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHH----HHHhCC---cEEEecccCCCcHHHHHHHHHHHHHHHhccCccccccccCC
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVF----AREHGL---VFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEANG 73 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~----~~~~~~---~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~ 73 (245)
.|+++|+||+||.+. .+..++...| ++..|. .++++||++|.|+++++..+.+.... ..
T Consensus 97 ~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~~-------------~~ 162 (368)
T 3h2y_A 97 NKVLLVGNKADLIPK-SVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRGG-------------KD 162 (368)
T ss_dssp SCEEEEEECGGGSCT-TSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHTT-------------SC
T ss_pred CcEEEEEEChhcCCc-ccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhccc-------------ce
Confidence 489999999999653 3445555544 556677 68999999999999999888764311 01
Q ss_pred cccCCCCCCCCCC-----CC------CCCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhh--------hHhh
Q psy13390 74 IKIGPQHSPNNPS-----LP------SGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSI--------TRSY 134 (245)
Q Consensus 74 ~~~~~~~~~~~~~-----l~------~~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~ 134 (245)
+.+.+..+..++. .+ .......+..|++.....+.+... +.++||||......+ ...+
T Consensus 163 i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~~ 239 (368)
T 3h2y_A 163 VYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLKLI 239 (368)
T ss_dssp EEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHHHh
Confidence 1111111100000 00 112223555666666666655543 899999997432211 1111
Q ss_pred --ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEecc
Q psy13390 135 --YRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSA 209 (245)
Q Consensus 135 --~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 209 (245)
.+..+.++++++.....-+..+.. +......+.|+++++||.|...... .......+.+..+..++..++
T Consensus 240 ~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g~~l~p~~~ 311 (368)
T 3h2y_A 240 TPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAGDLLSPPTP 311 (368)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBTTTBCSSCH
T ss_pred ccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc-HHHHHHHHHHHhCCccCCCch
Confidence 367888999998743211111111 1222235689999999999864332 223333444555554444443
No 196
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.12 E-value=1.8e-10 Score=86.53 Aligned_cols=61 Identities=46% Similarity=0.702 Sum_probs=51.3
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 61 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~ 61 (245)
+|+++|+||+|+.+.+.+..+++..++..++++++++||++|.||+++|..+++.+.+...
T Consensus 114 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 114 VEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174 (183)
T ss_dssp CEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 5899999999998888899999999999999999999999999999999999999876643
No 197
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.12 E-value=2.1e-10 Score=86.69 Aligned_cols=59 Identities=20% Similarity=0.384 Sum_probs=53.9
Q ss_pred CeEEEEeecCCC--ccCCCCCHHHHHHHHHHhC-CcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDL--DARREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl--~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|++|||||+|+ ...+.++.+++..++..++ ..|+++||++|.||+++|..+++.+.+.
T Consensus 120 ~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 120 VPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp SCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 589999999999 4578899999999999997 8999999999999999999999998765
No 198
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.12 E-value=2.2e-11 Score=101.80 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=79.6
Q ss_pred EEEEEEcCCChhhh-------------hhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q psy13390 114 IKLQIWDTAGQEAF-------------RSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKS 180 (245)
Q Consensus 114 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~ 180 (245)
..+.||||||..++ ..+...|++++|++|+|+|.++..... ..|+..+......+.|+++|+||+
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~ 213 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKI 213 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECG
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCC
Confidence 36999999998776 556778999999999999876533221 233444444444568999999999
Q ss_pred CCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 181 DLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 181 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
|+........+....+...++.+|+.+|+.++.++++.+........
T Consensus 214 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~~ 260 (360)
T 3t34_A 214 DLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARKR 260 (360)
T ss_dssp GGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHHH
T ss_pred ccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHHHH
Confidence 99765544444444444456778999999999999887766554443
No 199
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.11 E-value=2.7e-10 Score=86.49 Aligned_cols=61 Identities=41% Similarity=0.608 Sum_probs=56.4
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 61 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~ 61 (245)
+|+++|+||+|+.+.+.+..+++..++..++++++++||++|.||+++|..+++.+.+...
T Consensus 122 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 122 VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred CCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence 5899999999999889999999999999999999999999999999999999999987643
No 200
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.10 E-value=5.4e-12 Score=105.68 Aligned_cols=192 Identities=16% Similarity=0.133 Sum_probs=107.9
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHH----HHHhCC---cEEEecccCCCcHHHHHHHHHHHHHHHhccCccccccccCC
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVF----AREHGL---VFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEANG 73 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~----~~~~~~---~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~ 73 (245)
.|+++|+||+||.+. .+..+....| ++..|. .++.+||++|.|+++++..+.+.... ..
T Consensus 99 ~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~-------------~~ 164 (369)
T 3ec1_A 99 NPILLVGNKADLLPR-SVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREG-------------GD 164 (369)
T ss_dssp SCEEEEEECGGGSCT-TCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTT-------------SC
T ss_pred CCEEEEEEChhcCCC-ccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhccc-------------Cc
Confidence 389999999999653 3444445444 445566 68899999999999999888664311 01
Q ss_pred cccCCCCCCCCCC-----CCC-----CCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhh--------hhHhhc
Q psy13390 74 IKIGPQHSPNNPS-----LPS-----GSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRS--------ITRSYY 135 (245)
Q Consensus 74 ~~~~~~~~~~~~~-----l~~-----~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~ 135 (245)
+.+.+..+..++. .+. ......+..|++.....+.+... +.++||||...... ....++
T Consensus 165 i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~~~ 241 (369)
T 3ec1_A 165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKIIT 241 (369)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHHHS
T ss_pred EEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHHHh
Confidence 1111111111111 000 12223445566665555555543 79999999643221 112222
Q ss_pred --cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCC
Q psy13390 136 --RGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT 213 (245)
Q Consensus 136 --~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 213 (245)
+..+.++++++.....-+..+.. +......+.|+++++||.|....... ......+.+..+..+...++....
T Consensus 242 ~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~~~~~ 316 (369)
T 3ec1_A 242 PKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSKRYAA 316 (369)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCGGGTT
T ss_pred cccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCchhhh
Confidence 67899999999843211111111 22222356899999999998643322 233344555566655555555443
Q ss_pred C
Q psy13390 214 N 214 (245)
Q Consensus 214 ~ 214 (245)
+
T Consensus 317 ~ 317 (369)
T 3ec1_A 317 E 317 (369)
T ss_dssp T
T ss_pred h
Confidence 3
No 201
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.10 E-value=2.5e-10 Score=87.58 Aligned_cols=61 Identities=38% Similarity=0.629 Sum_probs=56.1
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 61 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~ 61 (245)
+|+++||||+|+.+.+.+..+++..++...+..++++||++|.||+++|..+++.+.+...
T Consensus 132 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 132 VITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 192 (201)
T ss_dssp CEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 5899999999998888899999999999999999999999999999999999999976643
No 202
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.10 E-value=2.9e-10 Score=87.09 Aligned_cols=60 Identities=45% Similarity=0.577 Sum_probs=55.6
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~~~~ 60 (245)
+|++|||||+|+.+.+.+..+++..++...++ .++++||++|.||+++|..+++.+.+..
T Consensus 135 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 135 IVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 58999999999988888999999999999999 8999999999999999999999987653
No 203
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.10 E-value=2.8e-10 Score=85.09 Aligned_cols=60 Identities=18% Similarity=0.357 Sum_probs=53.6
Q ss_pred CeEEEEeecCCC--ccCCCCCHHHHHHHHHHh-CCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDL--DARREVKKEEGEVFAREH-GLVFMETSAKLATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl--~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~ 60 (245)
+|++|||||+|+ ...+.+..+++..++... +.+++++||++|.||+++|..+++.+.+..
T Consensus 109 ~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 109 LALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLR 171 (178)
T ss_dssp CEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 589999999999 456789999999999887 689999999999999999999999987654
No 204
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.10 E-value=3.1e-10 Score=86.76 Aligned_cols=62 Identities=50% Similarity=0.715 Sum_probs=57.0
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhcc
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 62 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~ 62 (245)
+|+++|+||+|+...+.+..+++..++...++.++++||++|.||+++|..+++.+.+....
T Consensus 131 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~ 192 (200)
T 2o52_A 131 IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDS 192 (200)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 58999999999988888999999999999999999999999999999999999999876544
No 205
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.10 E-value=2.9e-10 Score=85.60 Aligned_cols=62 Identities=53% Similarity=0.743 Sum_probs=57.1
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhcc
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 62 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~ 62 (245)
+|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|..+++.+.+....
T Consensus 116 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 177 (186)
T 2bme_A 116 IVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 177 (186)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHS
T ss_pred CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 58999999999988888999999999999999999999999999999999999999876544
No 206
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.09 E-value=3.7e-10 Score=85.42 Aligned_cols=60 Identities=38% Similarity=0.584 Sum_probs=55.6
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~ 60 (245)
+|+++|+||+|+.+.+.+..+++..++..++..++++||++|.|++++|..+++.+.++.
T Consensus 128 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 128 AQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187 (189)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 589999999999888889999999999999999999999999999999999999987654
No 207
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.08 E-value=4.5e-10 Score=98.54 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=58.0
Q ss_pred ECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q psy13390 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDA 184 (245)
Q Consensus 109 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 184 (245)
+.++.+.++|+||||+-.|..-....++-+|++|+|+|+.++.--+...-|.. +.. .++|.+++.||+|...
T Consensus 95 ~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~---~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 95 FPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRM---RATPVMTFVNKMDREA 166 (548)
T ss_dssp EEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSCC
T ss_pred EEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHH---hCCceEEEEecccchh
Confidence 33445779999999999999999999999999999999998866666555533 333 3589999999999753
No 208
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.08 E-value=1.9e-10 Score=86.21 Aligned_cols=59 Identities=34% Similarity=0.469 Sum_probs=55.3
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|..+++.+...
T Consensus 112 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 112 IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 58999999999988899999999999999999999999999999999999999988654
No 209
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.07 E-value=3.9e-10 Score=84.31 Aligned_cols=60 Identities=35% Similarity=0.624 Sum_probs=55.5
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~ 60 (245)
+|+++|+||+|+.+.+.+..+++..++...+..++++||++|.|++++|..+++.+.+..
T Consensus 115 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 115 FPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp CCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 489999999999888889999999999999999999999999999999999999987654
No 210
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.07 E-value=4.5e-10 Score=93.97 Aligned_cols=96 Identities=23% Similarity=0.274 Sum_probs=73.2
Q ss_pred ChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHH----HHHH
Q psy13390 123 GQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGE----VFAR 198 (245)
Q Consensus 123 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~----~~~~ 198 (245)
..+.|+..++.+++.++++++|+|++++. ..|...+.+.. .++|+++|+||+|+.... ...+... .++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 56788999999999999999999999853 34555565554 478999999999996432 2333333 3356
Q ss_pred HcCC---cEEEeccCCCCCHHHHHHHHHHH
Q psy13390 199 EHGL---VFMETSAKLATNVEEAFIDTAKE 225 (245)
Q Consensus 199 ~~~~---~~~~~Sa~~~~~i~~~~~~i~~~ 225 (245)
..++ +++++||++|.|++++++.+.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6677 79999999999999999988654
No 211
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.06 E-value=3.2e-10 Score=83.98 Aligned_cols=57 Identities=35% Similarity=0.559 Sum_probs=53.4
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+|+++|+||+|+.+.+.+..+++..++...+.+++++||++|.|++++|..+++.+.
T Consensus 112 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 112 ICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp SEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 589999999999888889999999999999999999999999999999999998875
No 212
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.05 E-value=4.7e-10 Score=85.36 Aligned_cols=59 Identities=39% Similarity=0.628 Sum_probs=55.1
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCC-cHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT-NVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~f~~l~~~~~~~ 59 (245)
+|+++|+||+|+.+.+.+..+++..++..++.+++++||++|. ||+++|..+++.+.+.
T Consensus 133 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 133 VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp CCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence 5899999999998888899999999999999999999999999 9999999999998764
No 213
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.05 E-value=6.2e-10 Score=83.16 Aligned_cols=61 Identities=34% Similarity=0.452 Sum_probs=56.4
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 61 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~ 61 (245)
+|+++|+||+|+.+.+.+..+++..++...+.+++++||++|.|++++|..+.+.+.+...
T Consensus 114 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 114 VCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 5899999999999888899999999999999999999999999999999999999876643
No 214
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.05 E-value=3.3e-10 Score=83.51 Aligned_cols=57 Identities=40% Similarity=0.613 Sum_probs=53.4
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+|+++|+||+|+.+.+.+..+++..++..++.+++++||++|.|++++|..+++.+.
T Consensus 110 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 110 VPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp SCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 589999999999888889999999999999999999999999999999999998875
No 215
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.04 E-value=2.8e-10 Score=87.06 Aligned_cols=60 Identities=35% Similarity=0.518 Sum_probs=55.7
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~ 60 (245)
+|+++||||+|+...+.+..+++..++..++.+++++||++|.||+++|..+++.+.+..
T Consensus 130 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 130 VPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred CCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 489999999999988999999999999999999999999999999999999999987653
No 216
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.04 E-value=5.9e-11 Score=96.71 Aligned_cols=114 Identities=16% Similarity=0.206 Sum_probs=65.0
Q ss_pred CCeEEEEEEEcCCCh-------hhhhhhhH-------hhccC-------------CcEEEEEEeCCChhhHHHHHHHHHH
Q psy13390 110 DGKQIKLQIWDTAGQ-------EAFRSITR-------SYYRG-------------AAGALLVYDITRRETFNHLTTWLED 162 (245)
Q Consensus 110 ~~~~~~~~l~Dt~G~-------~~~~~~~~-------~~~~~-------------~d~vi~v~d~~~~~s~~~~~~~~~~ 162 (245)
.+....+++|||+|. +.+..+.. .+++. +++++++.+.+.. +++.... ..
T Consensus 72 ~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~--~~ 148 (301)
T 2qnr_A 72 RGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV--AF 148 (301)
T ss_dssp --CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH--HH
T ss_pred CCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH--HH
Confidence 344568999999998 55555544 44432 3456666654321 2333321 22
Q ss_pred HHhhcCCCCeEEEEEeCCCCccCccc--CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 163 ARQHSNSNMVIMLIGNKSDLDARREV--KKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 163 ~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
+.... .++|+++|+||+|+...+++ ..+++..++..++++++++||++| |++++|.++.+.+.+
T Consensus 149 l~~l~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 149 MKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHT-TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHH-hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 23333 46799999999998654332 245677788888999999999999 999999999998864
No 217
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.04 E-value=1.1e-09 Score=92.76 Aligned_cols=114 Identities=14% Similarity=0.033 Sum_probs=82.5
Q ss_pred EEEEEEcCCChhh----hhhhhH---hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCCcc
Q psy13390 114 IKLQIWDTAGQEA----FRSITR---SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN--SNMVIMLIGNKSDLDA 184 (245)
Q Consensus 114 ~~~~l~Dt~G~~~----~~~~~~---~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~ 184 (245)
..+.+||++|... +..+.. ..++.++.+++++|++ ..++.++..|..++..+.. ...|.++|+||+|+..
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 4689999999742 111222 2356799999999998 5567777777666655431 2579999999999864
Q ss_pred CcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390 185 RREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 230 (245)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 230 (245)
. ...+.........+++++.+||+++.|++++++++.+.+.+..
T Consensus 284 ~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 284 E--EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp H--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred H--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhcc
Confidence 3 1233444445556788999999999999999999999986543
No 218
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.04 E-value=6.5e-10 Score=83.53 Aligned_cols=60 Identities=38% Similarity=0.589 Sum_probs=55.4
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~ 60 (245)
+|+++|+||+|+.+.+.+..+++..++..++.+++++||++|.|++++|..+++.+.+..
T Consensus 124 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 124 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 183 (187)
T ss_dssp CCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence 589999999999888889999999999999999999999999999999999999987653
No 219
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.04 E-value=6.7e-10 Score=84.92 Aligned_cols=61 Identities=36% Similarity=0.552 Sum_probs=56.4
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 61 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~ 61 (245)
+|+++|+||+|+.+.+.+..+++..++..++++++++||++|.||+++|..+++.+.+...
T Consensus 114 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 174 (203)
T 1zbd_A 114 AQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMS 174 (203)
T ss_dssp CEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 5899999999998888899999999999999999999999999999999999999877654
No 220
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.03 E-value=8e-10 Score=83.79 Aligned_cols=60 Identities=55% Similarity=0.797 Sum_probs=55.5
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~ 60 (245)
+|+++|+||+|+...+.+..+++..++...++.++++||++|.|++++|..+++.+.+..
T Consensus 131 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 131 IVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 589999999999888888999999999999999999999999999999999999987654
No 221
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.03 E-value=7.8e-10 Score=83.58 Aligned_cols=61 Identities=38% Similarity=0.498 Sum_probs=56.1
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 61 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~ 61 (245)
+|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|..+++.+.+...
T Consensus 128 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 128 PDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 5899999999998888899999999999999999999999999999999999999876653
No 222
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.03 E-value=8.3e-10 Score=84.41 Aligned_cols=60 Identities=38% Similarity=0.589 Sum_probs=55.6
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~ 60 (245)
+|+++|+||+|+.+.+.+..+++..++..++.+++++||++|.||+++|..+++.+.+..
T Consensus 120 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179 (206)
T ss_dssp CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHcc
Confidence 589999999999888889999999999999999999999999999999999999987653
No 223
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.02 E-value=4.5e-10 Score=82.66 Aligned_cols=57 Identities=44% Similarity=0.685 Sum_probs=53.1
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+|+++|+||+|+.+.+++..+++..++...+.+++++||++|.|++++|..+++.+.
T Consensus 109 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 109 VPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp CCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence 589999999999888889999999999999999999999999999999999998774
No 224
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.02 E-value=8.5e-10 Score=82.47 Aligned_cols=58 Identities=52% Similarity=0.705 Sum_probs=53.9
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
+|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|..+++.+.+
T Consensus 117 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 117 VALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp CEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5899999999998888899999999999999999999999999999999999998854
No 225
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.01 E-value=7.8e-10 Score=82.51 Aligned_cols=57 Identities=35% Similarity=0.433 Sum_probs=52.6
Q ss_pred eEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 2 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 2 ~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
|+++|+||+|+.+.+.+..+++..++...+++++++||++|.||+++|..+++.+.+
T Consensus 117 ~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 117 LVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp EEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred eEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 489999999998888899999999999999999999999999999999999988754
No 226
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.01 E-value=8.4e-10 Score=81.35 Aligned_cols=56 Identities=43% Similarity=0.682 Sum_probs=51.9
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHh-CCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREH-GLVFMETSAKLATNVEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~f~~l~~~~ 56 (245)
+|+++|+||+|+.+.+.+..+++..++..+ +.+++++||++|.|++++|..+++.+
T Consensus 109 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 109 VPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 589999999999888889999999999987 78999999999999999999999876
No 227
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.01 E-value=4.7e-10 Score=82.90 Aligned_cols=56 Identities=46% Similarity=0.711 Sum_probs=51.8
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~ 56 (245)
+|+++||||+|+.+.+.+..+++..++...+.+++++||++|.|++++|..+++.+
T Consensus 112 ~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 112 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred CcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 58999999999988888999999999999999999999999999999999998754
No 228
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.01 E-value=4.4e-10 Score=86.97 Aligned_cols=59 Identities=25% Similarity=0.414 Sum_probs=53.4
Q ss_pred CeEEEEeecCCCccC------------CCCCHHHHHHHHHHhCC-cEEEecccCCCc-HHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATN-VEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~f~~l~~~~~~~ 59 (245)
+|++|||||+|+.+. +.+..+++..++..+++ .|+++||++|.| |+++|..+++.+...
T Consensus 132 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 132 TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp SEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred CCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 589999999999763 78999999999999999 899999999998 999999999988654
No 229
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.01 E-value=1e-09 Score=81.14 Aligned_cols=58 Identities=47% Similarity=0.685 Sum_probs=52.7
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|+++|+||+|+ ..+.+..+++..+++..+++++++||++|.|++++|..+++.+.+.
T Consensus 109 ~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 109 AQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp CEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 589999999999 4567888999999999999999999999999999999999988654
No 230
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.01 E-value=1.1e-09 Score=84.55 Aligned_cols=61 Identities=36% Similarity=0.508 Sum_probs=56.2
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 61 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~ 61 (245)
+|+++|+||+|+.+.+.+..+++..++...++.++++||++|.||+++|..+++.+.+...
T Consensus 142 ~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 142 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 5899999999998888899999999999999999999999999999999999999877543
No 231
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.01 E-value=6.3e-10 Score=84.48 Aligned_cols=59 Identities=39% Similarity=0.660 Sum_probs=53.4
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHh-CCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREH-GLVFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|+++|+||+|+.+.+.+..+++..++... +..++++||++|.||+++|..+++.+.++
T Consensus 132 ~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 132 AELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 589999999999888889999999999885 78999999999999999999999988653
No 232
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.00 E-value=1.3e-09 Score=83.45 Aligned_cols=61 Identities=39% Similarity=0.606 Sum_probs=56.1
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 61 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~ 61 (245)
+|+++|+||+|+.+.+.+..+++..++...+.+++++||++|.||+++|..+++.+.+...
T Consensus 114 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 174 (206)
T 2bcg_Y 114 VLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174 (206)
T ss_dssp CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCC
T ss_pred CCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 5899999999998888899999999999999999999999999999999999999976643
No 233
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.00 E-value=6.7e-10 Score=88.71 Aligned_cols=88 Identities=10% Similarity=0.025 Sum_probs=56.0
Q ss_pred CcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhcc---------CCcEEEEEEeCCChhhHHH-HHHHHHHHHhhc
Q psy13390 98 GGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYR---------GAAGALLVYDITRRETFNH-LTTWLEDARQHS 167 (245)
Q Consensus 98 ig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---------~~d~vi~v~d~~~~~s~~~-~~~~~~~~~~~~ 167 (245)
.+.+.......+......+.||||||++.+....+.+++ ++|++++|+|++... +.. ...|+..+....
T Consensus 68 ~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~ 146 (262)
T 3def_A 68 QAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTF 146 (262)
T ss_dssp CC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHH
T ss_pred CCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHh
Confidence 333333333333333347999999999877554444333 889999999987654 332 245666666544
Q ss_pred CC--CCeEEEEEeCCCCccCc
Q psy13390 168 NS--NMVIMLIGNKSDLDARR 186 (245)
Q Consensus 168 ~~--~~piivv~nK~Dl~~~~ 186 (245)
.. ..|+++|+||+|+...+
T Consensus 147 ~~~~~~~~ivv~nK~Dl~~~~ 167 (262)
T 3def_A 147 GKEIWCKTLLVLTHAQFSPPD 167 (262)
T ss_dssp CGGGGGGEEEEEECTTCCCST
T ss_pred chhhhcCEEEEEeCcccCCCC
Confidence 32 24999999999985433
No 234
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.00 E-value=7.4e-10 Score=83.97 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=53.4
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKIQ 61 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~ 61 (245)
+|++|||||+|+.+ .+..+++..++...+. .++++||++|.||+++|..+++.+.+...
T Consensus 136 ~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 136 VPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp SCEEEEEECTTSTT--CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEchhccc--ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 58999999999965 4789999999999999 99999999999999999999999987653
No 235
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.99 E-value=1.1e-09 Score=83.07 Aligned_cols=59 Identities=27% Similarity=0.475 Sum_probs=53.4
Q ss_pred CeEEEEeecCCCcc--CCCCCHHHHHHHHHHhCCc-EEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDA--RREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~--~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|+++||||+|+.+ .+.+..+++..++..++.. ++++||++|.||+++|..+++.+.+.
T Consensus 128 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 128 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp SEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred CCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999975 3778999999999999988 99999999999999999999988643
No 236
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.99 E-value=6.9e-10 Score=81.89 Aligned_cols=57 Identities=35% Similarity=0.343 Sum_probs=53.2
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+|+++|+||+|+.+.+.+..+++..++...+.+++++||++|.|++++|..+++.+.
T Consensus 110 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 110 IPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp CCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred CCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 589999999999887888999999999999999999999999999999999998875
No 237
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.99 E-value=9.2e-10 Score=81.36 Aligned_cols=56 Identities=39% Similarity=0.609 Sum_probs=52.1
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~ 56 (245)
+|+++|+||+|+.+.+++..+++..++...+.+++++||++|.|++++|..+++.+
T Consensus 112 ~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 112 IVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp SEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred CcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 58999999999988888999999999999999999999999999999999998765
No 238
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.98 E-value=5.8e-10 Score=86.74 Aligned_cols=61 Identities=46% Similarity=0.653 Sum_probs=54.4
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 61 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~ 61 (245)
+|++||+||+|+.+.+.+..+++..++...++.++++||++|.||+++|..+++.+.+...
T Consensus 119 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 119 VAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVS 179 (223)
T ss_dssp CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC-
T ss_pred CeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 5899999999998888899999999999999999999999999999999999999875543
No 239
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.98 E-value=8.3e-10 Score=90.39 Aligned_cols=112 Identities=11% Similarity=0.073 Sum_probs=69.5
Q ss_pred EEEEEEcCCChhh-------------hhhhhHhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q psy13390 114 IKLQIWDTAGQEA-------------FRSITRSYYRGAAGALLVYDITRRE-TFNHLTTWLEDARQHSNSNMVIMLIGNK 179 (245)
Q Consensus 114 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK 179 (245)
..+.||||||... +...+..+++.+|++++|+|.++.. ...+...++..+ ...+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence 4699999999753 4556778999999999999974322 111111222222 2246899999999
Q ss_pred CCCccCcccCHHHHHHHHHHcCCcEEEec---cCC---CCCHHHHHHHHHHHHHH
Q psy13390 180 SDLDARREVKKEEGEVFAREHGLVFMETS---AKL---ATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 180 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S---a~~---~~~i~~~~~~i~~~i~~ 228 (245)
+|+........+.........+..++.+| |.+ +.|+.+++..+...+..
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 99875443222222210011124455555 445 78899999888777643
No 240
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.97 E-value=8.4e-10 Score=82.58 Aligned_cols=58 Identities=52% Similarity=0.737 Sum_probs=53.0
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
+|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|..+++.+.+
T Consensus 118 ~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 118 MVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred CcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999998888899999999999999999999999999999999999987643
No 241
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.96 E-value=8.7e-10 Score=85.51 Aligned_cols=106 Identities=13% Similarity=0.067 Sum_probs=69.5
Q ss_pred EEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHH
Q psy13390 114 IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEG 193 (245)
Q Consensus 114 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 193 (245)
..+.+|||+|+-... ..+...++.+++|+|+++.... ...+.. .. +.|+++|+||+|+........++.
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~---~~---~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPE---IF---RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHH---HH---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhh---hh---hcCCEEEEecccCCcchhhHHHHH
Confidence 458999999951111 1122367899999998865321 111111 11 368899999999864332345555
Q ss_pred HHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390 194 EVFAREH--GLVFMETSAKLATNVEEAFIDTAKEIYEKI 230 (245)
Q Consensus 194 ~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 230 (245)
....... +++++++||++|.|++++|+++.+.+....
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 5555443 478999999999999999999998876544
No 242
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.96 E-value=9.9e-10 Score=83.83 Aligned_cols=57 Identities=40% Similarity=0.549 Sum_probs=52.1
Q ss_pred CeEEEEeecCCCc------cCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLD------ARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~------~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+|+++|+||+|+. ..+.+..+++..++...+++++++||++|.||+++|..+++.+.
T Consensus 134 ~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 5899999999996 45778899999999999999999999999999999999998874
No 243
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.96 E-value=2.5e-09 Score=85.10 Aligned_cols=111 Identities=15% Similarity=-0.041 Sum_probs=68.7
Q ss_pred EEEEEEcCCChhhhhhhhH------hhccCCcEEEEEEeCCChhhHHHHHHHHH-HHHhhcCCCCeEEEEEeCCCCccCc
Q psy13390 114 IKLQIWDTAGQEAFRSITR------SYYRGAAGALLVYDITRRETFNHLTTWLE-DARQHSNSNMVIMLIGNKSDLDARR 186 (245)
Q Consensus 114 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~vi~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~piivv~nK~Dl~~~~ 186 (245)
+.+.||||+|+........ .++.. +++++++|+....+..+...... ........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4699999999876543322 25566 89999998764333222221111 0111111358999999999986432
Q ss_pred ccCHHHHHH----------------------------HHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 187 EVKKEEGEV----------------------------FAREHG--LVFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 187 ~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
.. ++... ++..++ .+++++||++|.|++++++++.+.+.
T Consensus 188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 11 11111 012322 47999999999999999999988764
No 244
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.95 E-value=5.2e-10 Score=89.74 Aligned_cols=92 Identities=12% Similarity=0.008 Sum_probs=59.3
Q ss_pred CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhH-------hh--ccCCcEEEEEEeCCChhhHHH-HHHHHHHH
Q psy13390 94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITR-------SY--YRGAAGALLVYDITRRETFNH-LTTWLEDA 163 (245)
Q Consensus 94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~--~~~~d~vi~v~d~~~~~s~~~-~~~~~~~~ 163 (245)
+.++.|.++......+......+.+|||||...+..... .+ .+.+|++++|+|++.. ++.. ...|+..+
T Consensus 67 ~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l 145 (270)
T 1h65_A 67 ISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAI 145 (270)
T ss_dssp CCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHH
T ss_pred ccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHH
Confidence 344455555555555544556799999999876543211 12 3579999999998753 3332 23566666
Q ss_pred HhhcCCC--CeEEEEEeCCCCccCc
Q psy13390 164 RQHSNSN--MVIMLIGNKSDLDARR 186 (245)
Q Consensus 164 ~~~~~~~--~piivv~nK~Dl~~~~ 186 (245)
......+ +|+++|+||+|+...+
T Consensus 146 ~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 146 TDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHhCcccccCEEEEEECcccCCcC
Confidence 5543222 6999999999986544
No 245
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.95 E-value=2.3e-09 Score=81.73 Aligned_cols=60 Identities=27% Similarity=0.350 Sum_probs=53.8
Q ss_pred CeEEEEeecCCCcc------------CCCCCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDLDA------------RREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~~~~ 60 (245)
+|+++||||+|+.+ .+.+..+++..++..++. .++++||++|.||+++|..+++.+.+..
T Consensus 125 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 125 APIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp SCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 58999999999975 367889999999999987 8999999999999999999999887653
No 246
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.94 E-value=4.7e-10 Score=93.52 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=70.8
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHH
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEE 192 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~ 192 (245)
.+.+.||||+|... .....+..+|++++|+|......++.+... -.+.|+++|+||+|+....... ..
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~~~~~-~~ 238 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHHKEAR-LA 238 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGHHHHH-HH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcChhHHH-HH
Confidence 35689999999543 223346899999999998765444322110 0236899999999986432111 11
Q ss_pred HHHHHHH----------cCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390 193 GEVFARE----------HGLVFMETSAKLATNVEEAFIDTAKEIYEK 229 (245)
Q Consensus 193 ~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 229 (245)
...+... ++.+++.+||++|.|++++++++.+.+...
T Consensus 239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~ 285 (355)
T 3p32_A 239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL 285 (355)
T ss_dssp HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 1112111 246899999999999999999999888653
No 247
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.94 E-value=9.6e-10 Score=92.04 Aligned_cols=98 Identities=21% Similarity=0.207 Sum_probs=71.5
Q ss_pred CChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHH----HH
Q psy13390 122 AGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEV----FA 197 (245)
Q Consensus 122 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~----~~ 197 (245)
..++.|++..+.++++++++++|+|++++.+ .|...+.... .+.|+++|+||+|+.... ...+.... ++
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMA 128 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHH
Confidence 4578899999999999999999999998763 3444444443 368999999999996432 22333333 35
Q ss_pred HHcCC---cEEEeccCCCCCHHHHHHHHHHHH
Q psy13390 198 REHGL---VFMETSAKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 198 ~~~~~---~~~~~Sa~~~~~i~~~~~~i~~~i 226 (245)
...++ +++.+||++|.|++++++.+.+..
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 55676 689999999999999999886543
No 248
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.94 E-value=1e-09 Score=83.27 Aligned_cols=57 Identities=39% Similarity=0.558 Sum_probs=52.8
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+|+++|+||+|+.+.+.+..+++..++...+++++++||++|.||+++|..+++.+.
T Consensus 129 ~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 129 IVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 589999999999887889999999999999999999999999999999999988764
No 249
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.93 E-value=2.9e-09 Score=79.53 Aligned_cols=59 Identities=27% Similarity=0.450 Sum_probs=51.6
Q ss_pred CeEEEEeecCCCc-cCCCCCHHHHHHHHHH-hCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLD-ARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~-~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|+++|+||+|+. ..+.+..+++..++.. .+.+++++||++|.||+++|..+++.+.+.
T Consensus 119 ~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 119 FPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp CCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 4899999999994 4567889999999984 567899999999999999999999988765
No 250
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.93 E-value=1.7e-09 Score=82.77 Aligned_cols=60 Identities=25% Similarity=0.477 Sum_probs=44.2
Q ss_pred CeEEEEeecCCCcc-CCCCCHHHHHHHHHHhCCcEEEecccC-CCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDLDA-RREVKKEEGEVFAREHGLVFMETSAKL-ATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~-~~~i~~~f~~l~~~~~~~~ 60 (245)
+|+++|+||+|+.+ .+.++.+++..++..++..++++||++ |.|++++|..+++.+.+..
T Consensus 133 ~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 133 LRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp CEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHH
T ss_pred CcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence 58999999999987 788999999999999999999999999 9999999999999887654
No 251
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.92 E-value=1.2e-09 Score=81.38 Aligned_cols=56 Identities=46% Similarity=0.704 Sum_probs=52.1
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~ 56 (245)
+|+++|+||+|+.+.+.+..+++..++...+.+++++||++|.|++++|..+++.+
T Consensus 120 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 120 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp SEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred CcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 58999999999988888999999999999999999999999999999999998765
No 252
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.92 E-value=4.3e-09 Score=80.90 Aligned_cols=60 Identities=47% Similarity=0.690 Sum_probs=54.1
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 61 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~ 61 (245)
+|+++|+||+|+ ..+.+..+++..++..++++++++||++|.||+++|..+++.+.+...
T Consensus 126 ~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 185 (213)
T 3cph_A 126 AQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 185 (213)
T ss_dssp SEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 489999999999 457788899999999999999999999999999999999999877654
No 253
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.92 E-value=2.4e-09 Score=82.75 Aligned_cols=59 Identities=31% Similarity=0.499 Sum_probs=52.9
Q ss_pred CeEEEEeecCCCccC------------CCCCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|++|||||+|+... +.++.+++..+++..+. .++++||++|.||+++|..+++.+.+.
T Consensus 139 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 139 VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp CCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 589999999999764 37888999999999997 899999999999999999999988654
No 254
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.92 E-value=2.4e-09 Score=79.14 Aligned_cols=56 Identities=46% Similarity=0.592 Sum_probs=51.7
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~ 56 (245)
+|+++|+||+|+...+.+..+++..++..++.+++++||++|.|++++|..+++.+
T Consensus 110 ~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 110 IPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp CCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred CCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 48999999999988888999999999999999999999999999999999998755
No 255
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.91 E-value=4.8e-09 Score=78.88 Aligned_cols=59 Identities=37% Similarity=0.590 Sum_probs=53.6
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~ 60 (245)
+|+++|+||+|+. .+.+..+++..++..++.+++++||++|.|++++|..+++.+....
T Consensus 110 ~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 110 VPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp CCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhh
Confidence 5899999999997 4678889999999999999999999999999999999999987654
No 256
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.91 E-value=1.7e-09 Score=79.85 Aligned_cols=56 Identities=46% Similarity=0.748 Sum_probs=50.9
Q ss_pred CeEEEEeecCCCccC---CCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDAR---REVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~---~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~ 56 (245)
+|+++|+||+|+... +.+..+++..++...+++++++||++|.|++++|..+++.+
T Consensus 109 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 109 IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp CEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred CcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 589999999999765 77889999999999999999999999999999999998754
No 257
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.91 E-value=2.7e-09 Score=79.46 Aligned_cols=57 Identities=35% Similarity=0.581 Sum_probs=50.9
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHH-HhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAR-EHGLVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
+|+++|+||+|+. .+.+..+++..++. ..+.+++++||++|.|++++|..+++.+.+
T Consensus 117 ~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 117 FPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp SCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 4899999999997 57788999999998 456899999999999999999999998864
No 258
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.90 E-value=5.7e-09 Score=79.36 Aligned_cols=59 Identities=37% Similarity=0.594 Sum_probs=52.9
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~ 60 (245)
+|+++|+||+| ...+.+..+++..++...+.+++++||++|.|++++|..+++.+.+..
T Consensus 148 ~piilv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 148 YIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp CEEEEEEECTT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 58999999999 556788999999999999999999999999999999999999887653
No 259
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.89 E-value=2.5e-09 Score=82.67 Aligned_cols=60 Identities=23% Similarity=0.283 Sum_probs=51.5
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~ 60 (245)
+|+++|+||+|+.+.+.+..+++..++...+..++++||++|.|++++|..+++.+....
T Consensus 118 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 118 APIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp SCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred CCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 489999999999888889999999999999999999999999999999999999886543
No 260
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.89 E-value=5.1e-09 Score=79.20 Aligned_cols=58 Identities=43% Similarity=0.682 Sum_probs=52.4
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|+++|+||+|+. .+.+..+++..++...++.++++||++|.||+++|..+++.+.+.
T Consensus 122 ~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 122 IVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp CEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred CcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 5899999999995 467888999999999999999999999999999999999988653
No 261
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.89 E-value=6.4e-10 Score=82.34 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=47.7
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~ 56 (245)
+|+++|+||+|+...+.+.. ++..++..++.+++++||++|.||+++|..+++.+
T Consensus 109 ~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 109 ANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred CCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999976666654 46788999999999999999999999999998765
No 262
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.88 E-value=4.2e-09 Score=96.85 Aligned_cols=70 Identities=23% Similarity=0.275 Sum_probs=59.8
Q ss_pred CCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390 110 DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD 183 (245)
Q Consensus 110 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 183 (245)
++..+.++||||||+.+|...+..+++.+|++|+|+|++++.+++....|.... . .++|+++|+||+|+.
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA 163 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence 455789999999999999999999999999999999999998888766554432 2 358999999999985
No 263
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.87 E-value=7.5e-09 Score=78.11 Aligned_cols=58 Identities=38% Similarity=0.596 Sum_probs=53.0
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|+++|+||+|+.. +.+..+++..+++.++++++++||++|.|++++|..+++.+.+.
T Consensus 127 ~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 127 VPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp CCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 48999999999976 67888999999999999999999999999999999999988654
No 264
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.87 E-value=6.1e-09 Score=76.36 Aligned_cols=56 Identities=43% Similarity=0.647 Sum_probs=51.1
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+|+++|+||+|+.+ +.+..+++..++..++.+++++||++|.|++++|..+++.+.
T Consensus 109 ~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 109 VPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp CCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 58999999999976 667888999999999999999999999999999999998874
No 265
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.86 E-value=3.2e-09 Score=79.66 Aligned_cols=57 Identities=25% Similarity=0.418 Sum_probs=51.5
Q ss_pred CeEEEEeecCCCccC------------CCCCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+|+++|+||+|+.+. +.+..+++..++...+. +++++||++|.|++++|..+++.+.
T Consensus 110 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 110 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred CCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 589999999999753 67889999999999997 8999999999999999999998874
No 266
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.86 E-value=6.3e-09 Score=79.86 Aligned_cols=58 Identities=28% Similarity=0.449 Sum_probs=52.4
Q ss_pred CeEEEEeecCCCccC------------CCCCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
+|+++|+||+|+... +.+..+++..++...+. .++++||++|.||+++|..+++.+.+
T Consensus 130 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 130 VPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp CCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred CCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999765 66889999999999998 89999999999999999999998864
No 267
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.84 E-value=8.7e-09 Score=78.78 Aligned_cols=59 Identities=32% Similarity=0.533 Sum_probs=52.1
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHH-HhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAR-EHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~ 60 (245)
+|+++|+||+|+. .+.+..+++..++. ..+.+++++||++|.|++++|..+++.+.+..
T Consensus 118 ~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 118 FPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177 (207)
T ss_dssp SCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 4899999999997 56778888998988 56789999999999999999999999987654
No 268
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.83 E-value=8.1e-10 Score=98.78 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=56.5
Q ss_pred EECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD 183 (245)
Q Consensus 108 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 183 (245)
.+.++.+.++|+||||+..|..-....++-+|++|+|+|+.++-.-+...-|.. +..+ ++|.+++.||+|..
T Consensus 61 ~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~~---~lp~i~~INKmDr~ 132 (638)
T 3j25_A 61 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRKM---GIPTIFFINKIDQN 132 (638)
T ss_dssp CCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHHH---TCSCEECCEECCSS
T ss_pred EEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHHc---CCCeEEEEeccccc
Confidence 344455679999999999999999999999999999999998765554433332 3333 48999999999974
No 269
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.83 E-value=1.3e-09 Score=92.39 Aligned_cols=126 Identities=16% Similarity=0.133 Sum_probs=57.9
Q ss_pred CCCcceeeEEEEEECCeEEEEEEEcCCChhhhh-------hh------------------hHhhccCCcE--EEEEEeCC
Q psy13390 96 SGGGVEFGARMITIDGKQIKLQIWDTAGQEAFR-------SI------------------TRSYYRGAAG--ALLVYDIT 148 (245)
Q Consensus 96 ~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~------------------~~~~~~~~d~--vi~v~d~~ 148 (245)
+|++.+.....+...+....+++|||+|...+. .+ .+.++.++++ ++++.+.+
T Consensus 70 ~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt 149 (418)
T 2qag_C 70 KTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPS 149 (418)
T ss_dssp -CCEEEEEECC------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-
T ss_pred cceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCc
Confidence 455443333333333444579999999986531 11 1224455554 44444433
Q ss_pred ChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCccCcccCH--HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q psy13390 149 RRETFNHLT-TWLEDARQHSNSNMVIMLIGNKSDLDARREVKK--EEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 225 (245)
Q Consensus 149 ~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 225 (245)
. .+++... .|+..+. .++|+|+|+||+|+...+++.. +.+...+...+++++++||+++.++.++|..+...
T Consensus 150 ~-~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 150 G-HGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp C-CSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred c-cCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 1 2344433 4555553 3689999999999865544443 56667777889999999999999999988777654
Q ss_pred H
Q psy13390 226 I 226 (245)
Q Consensus 226 i 226 (245)
+
T Consensus 225 i 225 (418)
T 2qag_C 225 L 225 (418)
T ss_dssp C
T ss_pred C
Confidence 3
No 270
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.83 E-value=2.7e-09 Score=82.13 Aligned_cols=59 Identities=27% Similarity=0.483 Sum_probs=51.9
Q ss_pred CeEEEEeecCCCccCCC--------CCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARRE--------VKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~--------v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|++|||||+|+.+.+. +..+++..++..++. +++++||++|.||+++|..+++.+.+.
T Consensus 114 ~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 114 VPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp CCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred CCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 58999999999976543 488899999999996 899999999999999999999988644
No 271
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.83 E-value=7.4e-09 Score=78.61 Aligned_cols=56 Identities=41% Similarity=0.525 Sum_probs=50.8
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+|+++|+||+|+.+ +.+..+++..++..++..++++||++|.||+++|..+++.+.
T Consensus 115 ~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 115 IPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp SCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred CCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 48999999999975 678889999999999999999999999999999999998764
No 272
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.82 E-value=9.1e-09 Score=80.23 Aligned_cols=60 Identities=17% Similarity=0.044 Sum_probs=49.3
Q ss_pred CeEEEEeecCCCccCCCCCHH---HHHHHHHHhC--CcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDLDARREVKKE---EGEVFAREHG--LVFMETSAKLATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~---~~~~~~~~~~--~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~ 60 (245)
+|+++|+||+|+.+.+.+..+ .+..++...+ ..++++||++|.||+++|..+++.+.+..
T Consensus 143 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 143 KSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp CCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 589999999999877777765 4566777777 78999999999999999999999886553
No 273
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.81 E-value=1.4e-08 Score=81.74 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=69.3
Q ss_pred EEcCCChh-hhhhhhHhhccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHH
Q psy13390 118 IWDTAGQE-AFRSITRSYYRGAAGALLVYDITRRETFN--HLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGE 194 (245)
Q Consensus 118 l~Dt~G~~-~~~~~~~~~~~~~d~vi~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~ 194 (245)
+-..||+. +........++.+|++++|+|+.++.+.. .+.+|+ .++|+++|+||+|+..... .+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence 33466764 44445566899999999999999987664 333332 4689999999999964211 12223
Q ss_pred HHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390 195 VFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 229 (245)
Q Consensus 195 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 229 (245)
.+....+++++++||+++.|++++++.+.+.+...
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 33344578999999999999999999888777543
No 274
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.78 E-value=7.7e-10 Score=92.17 Aligned_cols=109 Identities=14% Similarity=0.083 Sum_probs=67.6
Q ss_pred EEEEEEcCCChh-------------hhhhhhHhhccCCcE-EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q psy13390 114 IKLQIWDTAGQE-------------AFRSITRSYYRGAAG-ALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNK 179 (245)
Q Consensus 114 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~-vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK 179 (245)
..+.||||||.. .+..+...|++.++. +++|.|++....-.+...++.. ....+.|+++|+||
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~---~~~~~~~~i~V~NK 206 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKE---VDPQGQRTIGVITK 206 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHH---HCTTCTTEEEEEEC
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHH---hCcCCCceEEEecc
Confidence 569999999963 455667778876655 4555666543222222223333 33356899999999
Q ss_pred CCCccCcccCHHHHHH--HHHHcC-CcEEEeccCCCCCHHHHHHHHHHH
Q psy13390 180 SDLDARREVKKEEGEV--FAREHG-LVFMETSAKLATNVEEAFIDTAKE 225 (245)
Q Consensus 180 ~Dl~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~ 225 (245)
+|+............. +....+ .+++.+||++|.|++++++++.+.
T Consensus 207 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 207 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred ccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 9986543311211110 001123 247889999999999999998873
No 275
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.76 E-value=1.4e-08 Score=76.38 Aligned_cols=56 Identities=23% Similarity=0.202 Sum_probs=48.2
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCc-------EEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLV-------FMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-------~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|+++|+||+|+...+ .+++..++..++.+ ++++||++|.|++++|..+++.+.+.
T Consensus 123 ~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 123 IPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp CCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred CceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 5899999999997654 56788899988874 69999999999999999999988654
No 276
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.74 E-value=8.6e-09 Score=86.95 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=33.0
Q ss_pred CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q psy13390 170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFI 220 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 220 (245)
.+|+++|+||+|+. ... ............+.+++.+||+.+.++.++++
T Consensus 214 ~kP~i~v~NK~D~~-~~~-~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAA-SDE-QIKRLVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGS-CHH-HHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCcccc-chH-HHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 48999999999985 211 11222222233367899999999999877543
No 277
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.74 E-value=4.3e-10 Score=85.83 Aligned_cols=57 Identities=44% Similarity=0.619 Sum_probs=45.5
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+|++||+||+|+.+.+.+..+++..++..++++++++||++|.||+++|..+++.+.
T Consensus 139 ~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 139 VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp SEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred CCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999888888888889999999999999999999999999999987664
No 278
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.71 E-value=1.2e-08 Score=84.44 Aligned_cols=104 Identities=13% Similarity=0.017 Sum_probs=65.5
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCH--
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKK-- 190 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-- 190 (245)
.+.+.||||+|...... ...+.+|++++|+|++....++.+.. .. .+.|.++|+||+|+.....+..
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~ 216 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIAR 216 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHH
Confidence 35699999999754332 24689999999999976533221111 00 1368899999999864221110
Q ss_pred HHHHHHHHHc-------CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 191 EEGEVFAREH-------GLVFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 191 ~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
++........ ..+++.+||++|.|++++++++.+.+.
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1122211121 346899999999999999999998765
No 279
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.69 E-value=1.8e-08 Score=82.83 Aligned_cols=58 Identities=24% Similarity=0.393 Sum_probs=52.2
Q ss_pred CeEEEEeecCCCccC------------CCCCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
+|+++||||+|+.+. +.+..+++..++...+. +++++||++|.||+++|..+++.+..
T Consensus 260 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 260 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 589999999999653 67899999999999997 89999999999999999999988753
No 280
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.67 E-value=9.7e-09 Score=77.29 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=49.5
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
+|+++|+||+|+...+.+. +++..+++.++.+++++||++|.|++++|+.+++.+..
T Consensus 113 ~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 113 ANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp CCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred CCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 5899999999997666555 45788899999999999999999999999999988754
No 281
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.66 E-value=1.3e-08 Score=77.16 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=43.7
Q ss_pred CeEEEEeecCCCccCCCCCHHHH-HHH-----HHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEG-EVF-----AREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~-~~~-----~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~ 60 (245)
+|++||+||+|+..... .++. ..+ ++..++.++++||++|.||+++|..+++.+.+..
T Consensus 128 ~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 128 VPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp CCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 48999999999976532 2221 111 1335678999999999999999999999987664
No 282
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.64 E-value=1.6e-07 Score=84.98 Aligned_cols=68 Identities=22% Similarity=0.259 Sum_probs=55.9
Q ss_pred eEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390 112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD 183 (245)
Q Consensus 112 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 183 (245)
+.+.++|+||||+-.|..-....++-+|++|+|+|+.++-.-+...-|.+ ..++ ++|.+++.||+|..
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~-a~~~---~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ-ANKY---GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHH---TCCEEEEEECSSST
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH-HHHc---CCCeEEEEcccccc
Confidence 46889999999999999999999999999999999998766665444443 3333 48999999999974
No 283
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.64 E-value=1.8e-08 Score=77.97 Aligned_cols=58 Identities=33% Similarity=0.484 Sum_probs=49.0
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~ 60 (245)
+|+++||||+|+.+.+. .. ++..++...+..++++||++|.||+++|..+++.+....
T Consensus 120 ~p~ilv~nK~Dl~~~~~-~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 120 IPIVLCGNKVDIKDRKV-KA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp CCEEEEEECTTSSSCSS-CG-GGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred CCEEEEEECCccccccc-cH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 58999999999976443 33 567788889999999999999999999999999886543
No 284
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.63 E-value=3.8e-09 Score=77.62 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=39.3
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHH-H----HHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEV-F----AREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
+|+++|+||+|+.+. ...++... + +...+.+++++||++|.|++++|..+++.+.+
T Consensus 102 ~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 102 AVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp CEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred CeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 589999999999653 23222221 1 11124469999999999999999999987743
No 285
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.63 E-value=1.4e-07 Score=71.76 Aligned_cols=60 Identities=52% Similarity=0.721 Sum_probs=55.2
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~ 60 (245)
.|+++|+||+||.+.+.+..+++..++...++.++++||+++.|++++|..+.+.+.+..
T Consensus 111 ~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 111 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 170 (199)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 479999999999888888999999999999999999999999999999999999987654
No 286
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.61 E-value=3.3e-09 Score=86.62 Aligned_cols=57 Identities=21% Similarity=0.208 Sum_probs=49.4
Q ss_pred CeEEEEeecCCCccC-------CCCCHHHHHHHHHH----hCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDAR-------REVKKEEGEVFARE----HGLVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~-------~~v~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
+|++|||||+||..+ |+|..++++.+|+. +++.||||||++ .||.++|..+++.+..
T Consensus 107 ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 107 INIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp CEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred CcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 589999999999753 56888889999986 678999999998 6999999999988753
No 287
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.60 E-value=8.1e-09 Score=76.33 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=41.2
Q ss_pred CeEEEEeecCCCccCCCCCHHHHH-H----HHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGE-V----FAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~-~----~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
+|+++|+||+|+.+.+ ..++.. . ++...+.+++++||++|.|++++|..+++.+.+
T Consensus 109 ~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 109 AILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp CEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 5899999999997543 222221 1 122335579999999999999999999988753
No 288
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.60 E-value=1.5e-08 Score=76.21 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=45.5
Q ss_pred CeEEEEeecCCCccCCCCC---HHHHHHHHHHhCCc----EEEecccCCC-cHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVK---KEEGEVFAREHGLV----FMETSAKLAT-NVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~---~~~~~~~~~~~~~~----~~~~Sa~~~~-~i~~~f~~l~~~~~~ 58 (245)
+|++|||||+|+.+.+.+. .+.+..+++.++++ ++++||++|. +++++|..+.+.+.+
T Consensus 113 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 113 SPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp CEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred CcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 5899999999997655433 34456677667776 9999999997 999999999887753
No 289
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.57 E-value=9.7e-10 Score=85.54 Aligned_cols=58 Identities=17% Similarity=0.064 Sum_probs=46.2
Q ss_pred CeEEEEEeCCCCccCcccCHHHHHHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 171 MVIMLIGNKSDLDARREVKKEEGEVFAREH--GLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
.|.++|+||+|+...+....++...++... +++++++||++|.|++++|+++.+.+..
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 688999999998654334566666666543 5789999999999999999999887753
No 290
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.56 E-value=4.2e-07 Score=75.43 Aligned_cols=103 Identities=11% Similarity=0.017 Sum_probs=62.8
Q ss_pred EEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHH
Q psy13390 114 IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEG 193 (245)
Q Consensus 114 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 193 (245)
+.+.|+||+|.... .......+|++++|+|++.+...+.+.. .+ -..|.++|+||+|+...... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence 45899999996421 2345679999999999987543322211 11 13588999999998532110 0111
Q ss_pred HHHHH----------HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 194 EVFAR----------EHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 194 ~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
..+.. .+..+++.+||++|.|++++++++.+.+..
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 11211 124568999999999999999999887644
No 291
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.54 E-value=5.5e-08 Score=79.11 Aligned_cols=51 Identities=20% Similarity=0.157 Sum_probs=42.9
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhC--CcEEEecccCCCcHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHG--LVFMETSAKLATNVEEAFIDTA 53 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~f~~l~ 53 (245)
+|++||+||+||.+.+.+ +++..++..++ ..++++||++|.||+++|..+.
T Consensus 116 ~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 116 LETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp CEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred CCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 589999999999765443 55778888887 8999999999999999997764
No 292
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.53 E-value=1.6e-08 Score=76.25 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=41.5
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHH-H----HHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEV-F----AREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|+++|+||+|+.+.. ..++... + +...+.+++++||++|.|++++|+.+++.+.+.
T Consensus 124 ~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 124 SLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 5899999999996542 2222221 1 122345799999999999999999999988543
No 293
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.51 E-value=1.6e-08 Score=75.95 Aligned_cols=56 Identities=18% Similarity=0.143 Sum_probs=39.9
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHH-----HHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFA-----REHGLVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
+|+++||||+|+.+.+ ..++..... ...+..++++||++|.||+++|..+++.+.+
T Consensus 118 ~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 118 VPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred CCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 5899999999997643 233322211 1224569999999999999999999987643
No 294
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.48 E-value=5.3e-08 Score=80.82 Aligned_cols=59 Identities=24% Similarity=0.199 Sum_probs=49.6
Q ss_pred CeEEEEeecCCCccCC---------------CCCHHHHHHHHHH-----------hCCcEEEecccCCCcHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARR---------------EVKKEEGEVFARE-----------HGLVFMETSAKLATNVEEAFIDTAK 54 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~---------------~v~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~f~~l~~ 54 (245)
+|++|||||+||..++ .++.+++..++.. .++.+++|||+++.||.++|..+++
T Consensus 261 ~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~ 340 (353)
T 1cip_A 261 TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD 340 (353)
T ss_dssp SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence 5899999999995332 4788999998873 4567999999999999999999999
Q ss_pred HHHHH
Q psy13390 55 EIYEK 59 (245)
Q Consensus 55 ~~~~~ 59 (245)
.+.+.
T Consensus 341 ~i~~~ 345 (353)
T 1cip_A 341 VIIKN 345 (353)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 295
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.47 E-value=7.6e-08 Score=76.54 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=48.2
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~ 56 (245)
+|+++|+||+|+...+.+.. ++..+++.+|++++++||++|.|++++|..+++.+
T Consensus 111 ~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 111 KKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp CCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHh
Confidence 58999999999977666654 47789999999999999999999999999998865
No 296
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.47 E-value=1.7e-07 Score=70.67 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=43.1
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHH-----HhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAR-----EHGLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+|+++|+||+|+.+ .+..++...+.. ..+..++++||++|.||+++|+.+++.+.
T Consensus 127 ~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 127 IPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp CCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred CeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 48999999999964 345666665553 13567999999999999999999998764
No 297
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.46 E-value=6.8e-08 Score=77.40 Aligned_cols=54 Identities=19% Similarity=0.152 Sum_probs=46.8
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 55 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~ 55 (245)
+|+++|+||+|+...+.+. .++..++..++++++++||++|.||+++|..+++.
T Consensus 108 ~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 161 (272)
T 3b1v_A 108 IPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHT 161 (272)
T ss_dssp SCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHS
T ss_pred CCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 5899999999997666655 45678999999999999999999999999998764
No 298
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.46 E-value=1.2e-06 Score=72.63 Aligned_cols=42 Identities=17% Similarity=0.119 Sum_probs=30.9
Q ss_pred CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCC
Q psy13390 170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKL 211 (245)
Q Consensus 170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 211 (245)
.+|+++++|+.|..-......+..+.++...+.+++.+||+.
T Consensus 199 ~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred CCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 589999999998642111234566777877889999999764
No 299
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.45 E-value=3.4e-08 Score=79.58 Aligned_cols=117 Identities=11% Similarity=0.110 Sum_probs=59.0
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHH---HhCCcEEEecccCCCcHHHHHHHHHHHHHHHhccCcc-ccccccCCccc
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAR---EHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVF-DITNEANGIKI 76 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~~~~-~~~~~~~~~~~ 76 (245)
.|+++|.||+||.+ .+..+.|.. ..+.+++.+||+++.|+++++..+.+.+......... ........+.+
T Consensus 51 kp~ilVlNK~DL~~-----~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~ 125 (282)
T 1puj_A 51 KPRIMLLNKADKAD-----AAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALI 125 (282)
T ss_dssp SCEEEEEECGGGSC-----HHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEE
T ss_pred CCEEEEEECcccCC-----HHHHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEE
Confidence 37899999999864 233333433 3467889999999999999998887766543210000 00011111222
Q ss_pred CCCCCCCC-----CCCCCCCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChh
Q psy13390 77 GPQHSPNN-----PSLPSGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQE 125 (245)
Q Consensus 77 ~~~~~~~~-----~~l~~~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~ 125 (245)
.+.++..+ ...+.......++.|++.....+.... .+.+|||||..
T Consensus 126 vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 126 IGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp EESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCC
T ss_pred EecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 22221111 112333345556666665554444433 48999999974
No 300
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.44 E-value=2.1e-07 Score=69.96 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=42.2
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHH-----HhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAR-----EHGLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+|+++|+||+|+.+ ....++...... ..+..++++||++|.|++++|+.+++.+.
T Consensus 118 ~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 118 AGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp CEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred CeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 58999999999964 334555443332 23557999999999999999999998774
No 301
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.43 E-value=5.5e-08 Score=87.74 Aligned_cols=108 Identities=14% Similarity=0.085 Sum_probs=69.9
Q ss_pred EEEEEcCCChhh-------------hhhhhHhhc-cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q psy13390 115 KLQIWDTAGQEA-------------FRSITRSYY-RGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKS 180 (245)
Q Consensus 115 ~~~l~Dt~G~~~-------------~~~~~~~~~-~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~ 180 (245)
.+.|+||||... +..+...|+ ..+|++++|+|++.+...++...++..+. ..+.|+++|.||+
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~---~~g~pvIlVlNKi 227 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKL 227 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC---TTCSSEEEEEECT
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH---hcCCCEEEEEeCc
Confidence 589999999643 223344454 58899999999987544344323333333 3468999999999
Q ss_pred CCccCcccCHHHHHH-H-HHHcC-CcEEEeccCCCCCHHHHHHHHHHH
Q psy13390 181 DLDARREVKKEEGEV-F-AREHG-LVFMETSAKLATNVEEAFIDTAKE 225 (245)
Q Consensus 181 Dl~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~ 225 (245)
|+............. . ....+ .+++.+||++|.|++++++.+.+.
T Consensus 228 Dlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 228 DLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp TSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred ccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 987544332211110 0 00012 357789999999999999988763
No 302
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.42 E-value=3.5e-07 Score=68.23 Aligned_cols=57 Identities=16% Similarity=0.111 Sum_probs=42.5
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHH-----hCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFARE-----HGLVFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|+++|+||+|+.+. ...++....... .+.+++++||++|.|++++|+.+++.+.++
T Consensus 120 ~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 120 AALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp CEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 589999999999653 344444333221 234699999999999999999999988654
No 303
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.42 E-value=2.5e-07 Score=71.68 Aligned_cols=56 Identities=16% Similarity=0.049 Sum_probs=47.2
Q ss_pred eEEEEeecCCCccCCCCCHHHHHHHHHHh--CCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 2 VIMLIGNKSDLDARREVKKEEGEVFAREH--GLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 2 ~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
|.++|+||+|+.+.+.+..+++..++..+ +.+++++||++|.|++++|..+.+.+.
T Consensus 166 ~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 166 ADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp CSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 56999999999765556778888887765 568999999999999999999988764
No 304
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.41 E-value=3.3e-07 Score=68.70 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=41.9
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHH-----HhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAR-----EHGLVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
+|+++|+||+|+.+.+ ..++...... ..+.+++++||++|.|++++|..+++.+.+
T Consensus 120 ~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 120 ATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp CEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 5899999999997543 3333322211 235579999999999999999999998754
No 305
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.38 E-value=7.6e-08 Score=78.82 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=49.7
Q ss_pred CeEEEEeecCCCccCC----------------CCCHHHHHHHH----------HHhCCcEEEecccCCCcHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARR----------------EVKKEEGEVFA----------REHGLVFMETSAKLATNVEEAFIDTAK 54 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~----------------~v~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~f~~l~~ 54 (245)
+|++|+|||+||..++ .++.++|..+. ...++.+++|||+++.||+++|..+++
T Consensus 235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~ 314 (327)
T 3ohm_A 235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD 314 (327)
T ss_dssp CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence 5899999999997544 57889998884 345567899999999999999999999
Q ss_pred HHHHH
Q psy13390 55 EIYEK 59 (245)
Q Consensus 55 ~~~~~ 59 (245)
.+.+.
T Consensus 315 ~Il~~ 319 (327)
T 3ohm_A 315 TILQL 319 (327)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 99765
No 306
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.38 E-value=2.5e-08 Score=75.25 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=39.4
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHH-HH----HHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEV-FA----REHGLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+|+++|+||+|+... ...++... +. ...+..++++||++|.||+++|..+++.+.
T Consensus 125 ~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 125 IPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp CCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred CCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999653 23322211 11 122456899999999999999999988664
No 307
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.38 E-value=2e-07 Score=81.77 Aligned_cols=58 Identities=14% Similarity=0.084 Sum_probs=47.9
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
+|+++||||+|+...+.+..+++..++...+.+++++||++|.||+++|..+++.+.+
T Consensus 151 ~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 151 SPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp CCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred CCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 4899999999998888889999999998999999999999999999999999887643
No 308
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.38 E-value=6.5e-07 Score=66.39 Aligned_cols=56 Identities=18% Similarity=0.065 Sum_probs=41.2
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHh-------C--CcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREH-------G--LVFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~-------~--~~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|+++|+||+|+... ..++........ + .+++++||++|.|++++|..+++.+...
T Consensus 108 ~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 108 VPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp CCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence 589999999998653 233333322222 2 4799999999999999999999887543
No 309
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.35 E-value=2.4e-07 Score=81.42 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=52.3
Q ss_pred EEEEEcCCChhh-----------hhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390 115 KLQIWDTAGQEA-----------FRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD 183 (245)
Q Consensus 115 ~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 183 (245)
.+.||||+|... +...+..+++.+|++++|+|+++.........|+..+.. .+.|+++|+||+|+.
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HEDKIRVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGGGEEEEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCCCEEEEEECCCcc
Confidence 589999999864 556777789999999999999875444455566655543 347999999999986
Q ss_pred cC
Q psy13390 184 AR 185 (245)
Q Consensus 184 ~~ 185 (245)
..
T Consensus 232 ~~ 233 (550)
T 2qpt_A 232 ET 233 (550)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 310
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.31 E-value=6.9e-07 Score=67.16 Aligned_cols=42 Identities=36% Similarity=0.511 Sum_probs=39.5
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCC
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLA 42 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 42 (245)
+|+++|+||+|+.+.+.+..+++..++..+++.++++||++|
T Consensus 128 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 169 (189)
T 1z06_A 128 IPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNP 169 (189)
T ss_dssp CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSG
T ss_pred CCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcC
Confidence 489999999999888889999999999999999999999999
No 311
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.31 E-value=3.1e-07 Score=74.66 Aligned_cols=53 Identities=25% Similarity=0.191 Sum_probs=42.4
Q ss_pred CeEEEEeecCCCccCCCCC-HHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVK-KEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 53 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~-~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~ 53 (245)
+|++||+||+||.+++.+. .++...++...+.+++++||++|.|++++|..+.
T Consensus 111 ~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 111 VEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 5899999999997544333 4555667777889999999999999999997664
No 312
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.30 E-value=2.8e-07 Score=76.69 Aligned_cols=60 Identities=23% Similarity=0.203 Sum_probs=48.0
Q ss_pred CeEEEEeecCCCccCC----------------CCCHHHHHHHHH-----------HhCCcEEEecccCCCcHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARR----------------EVKKEEGEVFAR-----------EHGLVFMETSAKLATNVEEAFIDTA 53 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~----------------~v~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~f~~l~ 53 (245)
+|++|||||+||..++ .++.+++..++. ..++.+++|||+++.||+++|..++
T Consensus 269 ~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~ 348 (362)
T 1zcb_A 269 VSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVK 348 (362)
T ss_dssp SEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHH
Confidence 5899999999986432 377888888762 3456789999999999999999999
Q ss_pred HHHHHHh
Q psy13390 54 KEIYEKI 60 (245)
Q Consensus 54 ~~~~~~~ 60 (245)
+.+.+..
T Consensus 349 ~~i~~~~ 355 (362)
T 1zcb_A 349 DTILHDN 355 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887653
No 313
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.29 E-value=3.6e-07 Score=75.80 Aligned_cols=59 Identities=20% Similarity=0.205 Sum_probs=44.8
Q ss_pred CeEEEEeecCCCccCCC--C-------------------CHHHHHHHHHH-h---------------CCcEEEecccCCC
Q psy13390 1 MVIMLIGNKSDLDARRE--V-------------------KKEEGEVFARE-H---------------GLVFMETSAKLAT 43 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~--v-------------------~~~~~~~~~~~-~---------------~~~~~~~Sa~~~~ 43 (245)
+|++|||||+||..++. + +.+++..++.. + ...+++|||+++.
T Consensus 251 ~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~ 330 (354)
T 2xtz_A 251 TSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQK 330 (354)
T ss_dssp CEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHH
T ss_pred CeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecch
Confidence 58999999999864322 2 25677777543 1 2246899999999
Q ss_pred cHHHHHHHHHHHHHHH
Q psy13390 44 NVEEAFIDTAKEIYEK 59 (245)
Q Consensus 44 ~i~~~f~~l~~~~~~~ 59 (245)
||+++|..+++.+.+.
T Consensus 331 nV~~vF~~v~~~I~~~ 346 (354)
T 2xtz_A 331 LVKKTFKLVDETLRRR 346 (354)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999988654
No 314
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.28 E-value=1.1e-06 Score=71.73 Aligned_cols=57 Identities=16% Similarity=0.057 Sum_probs=48.1
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhC--CcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHG--LVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+|+++|+||+|+...+....+....++..++ ..++++||++|.|++++|..+++.+.
T Consensus 123 ~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 123 KPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp CCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 5899999999997445556677778888876 67999999999999999999988763
No 315
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.27 E-value=1.7e-07 Score=77.13 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=40.2
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHH-HH----HHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEV-FA----REHGLVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
+|++|||||+|+.+.. ..++... +. ...+.+++++||++|.||+++|..+++.+.+
T Consensus 267 ~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 267 AVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp CEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred CeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 5899999999997543 2222221 11 1123469999999999999999999987743
No 316
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.27 E-value=1.6e-06 Score=71.53 Aligned_cols=103 Identities=8% Similarity=0.010 Sum_probs=63.0
Q ss_pred EEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHH
Q psy13390 114 IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEG 193 (245)
Q Consensus 114 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 193 (245)
+.+.|+||+|...-. ......+|.+++++|...+...+.+...+ . ..|.+++.||+|+...........
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccCchhHHHHHH
Confidence 468999999975422 22457899999999986543222111111 1 135577779999743221111122
Q ss_pred HHHHHH----------cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390 194 EVFARE----------HGLVFMETSAKLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 194 ~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 227 (245)
..+... +..+++.+||+++.|++++++.+.+...
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222221 1346899999999999999999988764
No 317
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.27 E-value=2.7e-06 Score=70.92 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=37.9
Q ss_pred CCeEEEEEeCCCCc--cC-cccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q psy13390 170 NMVIMLIGNKSDLD--AR-REVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221 (245)
Q Consensus 170 ~~piivv~nK~Dl~--~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 221 (245)
.+|+++++||.|.. .. +....+..+.++...+.+++++||+++.++.+++..
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~ 255 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGE 255 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchH
Confidence 47999999999842 21 122346677788878899999999987777766544
No 318
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.24 E-value=4.9e-07 Score=73.41 Aligned_cols=92 Identities=15% Similarity=0.113 Sum_probs=62.6
Q ss_pred hhhhhHhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCccc--CHHHHHHHHHHcCCc
Q psy13390 127 FRSITRSYYRGAAGALLVYDITRRE-TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREV--KKEEGEVFAREHGLV 203 (245)
Q Consensus 127 ~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~ 203 (245)
.+.+.+..+.++|.+++|+|+.+|. +...+.+++..... .++|.+||.||+|+...... ..+.........|++
T Consensus 76 ~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~ 152 (307)
T 1t9h_A 76 TNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD 152 (307)
T ss_dssp SCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe
Confidence 3445566899999999999998765 34444554433322 46899999999999653210 012233344456889
Q ss_pred EEEeccCCCCCHHHHHHH
Q psy13390 204 FMETSAKLATNVEEAFID 221 (245)
Q Consensus 204 ~~~~Sa~~~~~i~~~~~~ 221 (245)
++.+||+++.|+++++..
T Consensus 153 v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EEECCHHHHTTCTTTGGG
T ss_pred EEEEecCCCCCHHHHHhh
Confidence 999999999998876643
No 319
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.23 E-value=1.1e-06 Score=73.26 Aligned_cols=57 Identities=21% Similarity=0.238 Sum_probs=47.2
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
.|+++|+||+|+...+. .+++..++...+.+++++||++|.|++++|..+++.+...
T Consensus 281 ~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 281 LPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp SCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 48999999999865433 2456677778888999999999999999999999888543
No 320
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.22 E-value=5.4e-07 Score=73.48 Aligned_cols=55 Identities=22% Similarity=0.204 Sum_probs=47.8
Q ss_pred CeEEEEeecCCCcc--CCC----CCHHHHHHHHHHhC---CcEEEecccCCCcHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDA--RRE----VKKEEGEVFAREHG---LVFMETSAKLATNVEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~--~~~----v~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~f~~l~~~~ 56 (245)
+|+++||||+|+.. .+. +..+++..+++.+| ++++++||++ .++.++|..+++.+
T Consensus 116 ~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 116 AKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred CeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 58999999999976 454 66788899999987 6899999999 99999999998765
No 321
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.22 E-value=6.4e-08 Score=77.09 Aligned_cols=105 Identities=14% Similarity=0.113 Sum_probs=52.9
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhccCccccccccCCcccCCCC
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEANGIKIGPQH 80 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (245)
.|.++|.||+||.+... .+....+.+..|.++ .+||+++.|+++++..+...+ ..+.+.+.+
T Consensus 47 k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~~~---------------~~v~~vG~~ 108 (262)
T 3cnl_A 47 KETIILLNKVDIADEKT--TKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSFDRL---------------ARVLIVGVP 108 (262)
T ss_dssp SEEEEEEECGGGSCHHH--HHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCCCTT---------------CEEEEEEST
T ss_pred CCcEEEEECccCCCHHH--HHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHHHhh---------------hheEEeCCC
Confidence 47899999999864211 112223344457778 899999999998876654322 011111111
Q ss_pred CCCC-----CCCCCCCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhh
Q psy13390 81 SPNN-----PSLPSGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEA 126 (245)
Q Consensus 81 ~~~~-----~~l~~~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 126 (245)
+..+ ...+.....+.++.|.+.....+.... .+.+|||||...
T Consensus 109 ~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 109 NTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp TSSHHHHHHHHHTTCC----------CCSCEEECTT---SCEEESSCEECC
T ss_pred CCCHHHHHHHHhcccccccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 1111 111222233455666666544444332 489999999764
No 322
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.22 E-value=7.7e-07 Score=70.82 Aligned_cols=84 Identities=13% Similarity=0.026 Sum_probs=59.2
Q ss_pred hhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEecc
Q psy13390 130 ITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSA 209 (245)
Q Consensus 130 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 209 (245)
.....++++|+++.|+|+.++.+..... +. + . ++|.++|.||+|+..... .+....+....++++ .+||
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l--~k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~~v-~iSa 82 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S--RKETIILLNKVDIADEKT--TKKWVEFFKKQGKRV-ITTH 82 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T--TSEEEEEEECGGGSCHHH--HHHHHHHHHHTTCCE-EECC
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c--CCCcEEEEECccCCCHHH--HHHHHHHHHHcCCeE-EEEC
Confidence 4456889999999999999886654211 11 1 1 589999999999964211 122233444567888 9999
Q ss_pred CCCCCHHHHHHHHHH
Q psy13390 210 KLATNVEEAFIDTAK 224 (245)
Q Consensus 210 ~~~~~i~~~~~~i~~ 224 (245)
++|.|++++++.+..
T Consensus 83 ~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 83 KGEPRKVLLKKLSFD 97 (262)
T ss_dssp TTSCHHHHHHHHCCC
T ss_pred CCCcCHHHHHHHHHH
Confidence 999999998877643
No 323
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.19 E-value=1.1e-06 Score=67.79 Aligned_cols=59 Identities=17% Similarity=0.015 Sum_probs=40.8
Q ss_pred CeEEEEeecCCCccCCCCCH--HHHHH-HHHH------hCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKK--EEGEV-FARE------HGLVFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~--~~~~~-~~~~------~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|+++|+||+|+...+.+.. ++... +... .+.+++++||++|.||+++|..+.+.+...
T Consensus 145 ~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 145 KPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 58999999999865332211 11122 2222 456799999999999999999999887543
No 324
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.19 E-value=6.1e-07 Score=71.78 Aligned_cols=55 Identities=29% Similarity=0.226 Sum_probs=47.1
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~ 56 (245)
+|+++|+||+|+.+.+.+... ...++..++++++++||++|.|++++|..+.+.+
T Consensus 110 ~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 110 KNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp CSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred CCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 589999999998765544443 6778889999999999999999999999998876
No 325
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.15 E-value=3.2e-06 Score=62.99 Aligned_cols=42 Identities=33% Similarity=0.521 Sum_probs=38.8
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCC
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLA 42 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 42 (245)
+|+++|+||+|+.+.+.+..+++..++..++++++++||++.
T Consensus 124 ~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (183)
T 3kkq_A 124 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDP 165 (183)
T ss_dssp CCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSS
T ss_pred CcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCC
Confidence 589999999999988899999999999999999999999753
No 326
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.15 E-value=1.6e-06 Score=66.88 Aligned_cols=58 Identities=16% Similarity=0.012 Sum_probs=46.4
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhC--CcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHG--LVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
.|+++|+||+|+...+....++...++...+ .+++++||++|.|++++|..+.+.+..
T Consensus 155 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 155 VADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred cCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 4789999999987544456777777776653 679999999999999999999987744
No 327
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.14 E-value=6.2e-07 Score=71.15 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=44.5
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 55 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~ 55 (245)
+|+++|+||+|+...+.+... ...+++.++++++++||++|.|++++|..+.+.
T Consensus 111 ~pvilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 111 KPVVVALNMMDIAEHRGISID-TEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp SCEEEEEECHHHHHHTTCEEC-HHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CCEEEEEEChhcCCcCCcHHH-HHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 589999999998765544332 455888899999999999999999999988663
No 328
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.11 E-value=4.9e-07 Score=76.73 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=47.5
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+|+++|+||+|+...+.. +.+..++..++.+++++||++|.|++++|..+++.+.
T Consensus 141 ~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 141 IPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp CCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred CCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence 589999999999876554 5667777778899999999999999999999998874
No 329
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.09 E-value=3.3e-06 Score=63.43 Aligned_cols=56 Identities=34% Similarity=0.453 Sum_probs=44.8
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|++|||||+|+...+.++.+++..++..+++.++++||+.. + +-...+...+.+.
T Consensus 128 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~-g--~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 128 IPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLD-F--EHVQHVFHEAVRE 183 (187)
T ss_dssp CCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSC-S--HHHHHHHHHHHHH
T ss_pred CCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCc-c--ccHHHHHHHHHHH
Confidence 589999999999888889999999999999999999999732 2 2345555555443
No 330
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.09 E-value=5.5e-07 Score=72.21 Aligned_cols=55 Identities=9% Similarity=0.138 Sum_probs=44.8
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~ 56 (245)
+|+++|+||+|+.+.+.+.. +...+++.++++++++||++|.|++++|..+.+.+
T Consensus 113 ~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 113 IPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp CCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred CCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 58999999999876544332 24678888999999999999999999998886643
No 331
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.06 E-value=1.3e-06 Score=73.55 Aligned_cols=59 Identities=25% Similarity=0.208 Sum_probs=44.1
Q ss_pred CeEEEEeecCCCccCCC---C---------------------------CHHHHHHHH-----HH--------hCCcEEEe
Q psy13390 1 MVIMLIGNKSDLDARRE---V---------------------------KKEEGEVFA-----RE--------HGLVFMET 37 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~---v---------------------------~~~~~~~~~-----~~--------~~~~~~~~ 37 (245)
+|++|||||+||...+. + +.++|..|+ .. .++.+++|
T Consensus 285 ~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~T 364 (402)
T 1azs_C 285 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFT 364 (402)
T ss_dssp CCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEEC
T ss_pred CeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEE
Confidence 58999999999865332 2 145676664 22 13457899
Q ss_pred cccCCCcHHHHHHHHHHHHHHH
Q psy13390 38 SAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 38 Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
||+++.||+++|..+.+.+.+.
T Consensus 365 SA~d~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 365 CAVDTENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHH
T ss_pred EeecCcCHHHHHHHHHHHHHHH
Confidence 9999999999999998888654
No 332
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.00 E-value=6.9e-07 Score=77.65 Aligned_cols=57 Identities=19% Similarity=0.189 Sum_probs=39.5
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHH-----HHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFA-----REHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|++||+||+||.... ..++..... ...+..++++||++|.||+++|+.|++.+.+.
T Consensus 424 ~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 424 AIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp CEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC--
T ss_pred CcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 5899999999996532 333222111 11233599999999999999999999877444
No 333
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.99 E-value=9.1e-06 Score=70.16 Aligned_cols=55 Identities=18% Similarity=0.108 Sum_probs=43.2
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
.|+++|+||+|+... +..++...++. .+.+++++||++|.|++++|..+.+.+..
T Consensus 351 ~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 351 KRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp SSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred CCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 489999999999643 45555554432 34689999999999999999999987653
No 334
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.95 E-value=1e-05 Score=60.41 Aligned_cols=55 Identities=25% Similarity=0.360 Sum_probs=42.1
Q ss_pred CeEEEEeecCCCcc------------CCCCCHHHHHHHHHHhC-CcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDA------------RREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
+|++|||||+|+.+ .+.++.+++..+++.++ .+++++||+++. +-...+...+.+
T Consensus 112 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~---~gi~~l~~~i~~ 179 (184)
T 1m7b_A 112 TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE---NSVRDIFHVATL 179 (184)
T ss_dssp CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBH---HHHHHHHHHHHH
T ss_pred CCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCC---cCHHHHHHHHHH
Confidence 58999999999975 26789999999999988 689999998532 234455555543
No 335
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.95 E-value=1.7e-06 Score=70.24 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=38.7
Q ss_pred CeEEEEeecCCCccCCCC--CHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREV--KKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+++++|+||.|+...+++ ..+++..++..+++.+|++||+++ |++++|..+++.+.
T Consensus 156 ~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 156 VNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp SCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 478999999998754432 346778899999999999999999 99999999998885
No 336
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.93 E-value=9.4e-06 Score=69.98 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=42.4
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
.|+++|+||+|+...+.+ +...++.....+++++||++|.||+++|..+.+.+.
T Consensus 344 ~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 344 AKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp SEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred CCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 489999999999765543 223455543478999999999999999999988774
No 337
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.92 E-value=4.2e-06 Score=69.09 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=43.8
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhC--CcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHG--LVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
.|+++|+||+|+... .+....+++.+. ..++++||+++.|++++|..+.+.+.
T Consensus 275 ~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 275 RPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp SCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred CCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 478999999998642 245667777776 67999999999999999999998874
No 338
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.90 E-value=4.8e-05 Score=62.98 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=55.2
Q ss_pred hccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccC-HHHHHHHHHHcCCcEEEeccCC
Q psy13390 134 YYRGAAGALLVYDITRRE-TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVK-KEEGEVFAREHGLVFMETSAKL 211 (245)
Q Consensus 134 ~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~ 211 (245)
...++|.+++|.+. +|. +...+.+++..... .++|.+||.||+|+....... .+.........|++++.+||++
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 47899999988665 453 34445555543333 247889999999996432100 1112223345688999999999
Q ss_pred CCCHHHHHHH
Q psy13390 212 ATNVEEAFID 221 (245)
Q Consensus 212 ~~~i~~~~~~ 221 (245)
+.|++++...
T Consensus 203 ~~gl~~L~~~ 212 (358)
T 2rcn_A 203 QDGLKPLEEA 212 (358)
T ss_dssp TBTHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 9999988754
No 339
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.86 E-value=1.7e-06 Score=72.03 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=38.2
Q ss_pred CeEEEEeecCCCccCCCCCH--HHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKK--EEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+|+++|+||+|+...+.+.. +++..++..++++++++||++|.+ ++.|..+++.+.+.
T Consensus 175 ~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 175 VNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 58999999999876555444 466677777889999999999999 99999999888654
No 340
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.84 E-value=2e-05 Score=60.10 Aligned_cols=55 Identities=25% Similarity=0.360 Sum_probs=42.2
Q ss_pred CeEEEEeecCCCcc------------CCCCCHHHHHHHHHHhC-CcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDA------------RREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
+|++|||||+|+.+ .+.++.+++..+++.++ ..|+++||+++. +-.+.+...+.+
T Consensus 133 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~---~gv~~lf~~l~~ 200 (205)
T 1gwn_A 133 TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE---NSVRDIFHVATL 200 (205)
T ss_dssp CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCH---HHHHHHHHHHHH
T ss_pred CCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCC---cCHHHHHHHHHH
Confidence 58999999999974 36789999999999988 689999998542 334555555543
No 341
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.83 E-value=5.9e-06 Score=67.93 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=45.8
Q ss_pred CeEEEEeecCCCccCC---------------CCCHHHHHHHHHH-h--------------------------CCcEEEec
Q psy13390 1 MVIMLIGNKSDLDARR---------------EVKKEEGEVFARE-H--------------------------GLVFMETS 38 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~---------------~v~~~~~~~~~~~-~--------------------------~~~~~~~S 38 (245)
+|++|+|||+||..++ ..+.++|..|... + .+.+++||
T Consensus 229 ~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~Ts 308 (340)
T 4fid_A 229 AVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTN 308 (340)
T ss_dssp SEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEEC
T ss_pred CeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEE
Confidence 5899999999986421 1357777666543 3 25689999
Q ss_pred ccCCCcHHHHHHHHHHHHHH
Q psy13390 39 AKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 39 a~~~~~i~~~f~~l~~~~~~ 58 (245)
|+++.||+.+|..+.+.|++
T Consensus 309 A~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 309 ATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred eeCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999987
No 342
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.72 E-value=3.1e-05 Score=65.55 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=37.3
Q ss_pred eEEEEeecCCCccCCC--CCHHHHHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 2 VIMLIGNKSDLDARRE--VKKEEGEVFARE---HGLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 2 ~~~lvgnK~Dl~~~~~--v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
|+++|+||+|+.+.+. ...++...++.. .+.+++++||++|.|++++|+.+.+.+.
T Consensus 137 ~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 137 KIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp CEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred eEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 6899999999976443 234556666654 2568999999999999999999887653
No 343
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.66 E-value=2e-05 Score=67.71 Aligned_cols=52 Identities=15% Similarity=0.106 Sum_probs=39.8
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~ 56 (245)
.|+++|+||+|+...+.+. ....++ .+.+++++||++|.|++++|..+.+.+
T Consensus 331 ~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 331 RPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp SCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3899999999997655443 111111 356799999999999999999998876
No 344
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.63 E-value=7.1e-05 Score=66.21 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=44.2
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCc---EEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLV---FMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+|+++|+||+|+...+ ..+....++..++.. ++++||++|.||+++|+.+++.+.
T Consensus 124 ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 124 LEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp CEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred CCEEEeeeccCccccc--HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 5899999999997543 233456677777764 899999999999999999988764
No 345
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.63 E-value=3.4e-05 Score=62.57 Aligned_cols=56 Identities=18% Similarity=0.110 Sum_probs=42.0
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~ 56 (245)
.|+++|+||+|+...+....+....++..++. .++++||++|.|++++++.+.+.+
T Consensus 117 ~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 117 APVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp SCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred CCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999865222223444556666665 689999999999999999988754
No 346
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.62 E-value=1.8e-05 Score=64.14 Aligned_cols=52 Identities=27% Similarity=0.104 Sum_probs=38.1
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHh-C-CcEEEecccCCCcHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREH-G-LVFMETSAKLATNVEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~~~f~~l~~~~ 56 (245)
+|+++|+||+|+...+. +....+..+ + ..++++||++|.|++++|+.+.+.+
T Consensus 118 ~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 118 VPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp SCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 48999999999865432 022233332 3 4689999999999999999988754
No 347
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.53 E-value=1.3e-05 Score=61.59 Aligned_cols=44 Identities=20% Similarity=0.205 Sum_probs=29.4
Q ss_pred CeEEEEeecCCCccCCCCC------HHHHHHHHHHhCCcEEEecccCCCc
Q psy13390 1 MVIMLIGNKSDLDARREVK------KEEGEVFAREHGLVFMETSAKLATN 44 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~------~~~~~~~~~~~~~~~~~~Sa~~~~~ 44 (245)
+|+++|+||+|+...+.+. .+++..++...+..++++||++|.+
T Consensus 121 ~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 121 IDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp CCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 5899999999998776654 5567778888888999999998875
No 348
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.53 E-value=9.2e-05 Score=65.45 Aligned_cols=55 Identities=25% Similarity=0.232 Sum_probs=43.3
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCC---cEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGL---VFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+|+++|+||+|+...+ ..+....++..++. .++++||++|.||+++|+.+++.+.
T Consensus 126 ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 126 LVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp CEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCEEEEEeccCccccC--HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 5899999999997543 22334556666676 3899999999999999999988774
No 349
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.48 E-value=6.7e-05 Score=64.84 Aligned_cols=57 Identities=18% Similarity=0.090 Sum_probs=42.2
Q ss_pred CeEEEEeecCCCccCCC--CCHHHHHHHHHHh----CCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARRE--VKKEEGEVFAREH----GLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~--v~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+|+++|+||+|+.+... ...++...+.... +.+++++||++|.|++++|+.+.+.+.
T Consensus 126 ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 126 IPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 47799999999864211 1123344555544 567999999999999999999998775
No 350
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.44 E-value=2.4e-05 Score=66.30 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=31.4
Q ss_pred CeEEEEeecCCCccCCCCCH--HHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKK--EEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 55 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~ 55 (245)
+|+++|+||+|+...+.+.. +++..++...++.+|++||+++.+++++|..+...
T Consensus 168 v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 168 VNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp SEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred CcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 48999999999876555554 66778888899999999999999999887766543
No 351
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.43 E-value=6e-05 Score=63.79 Aligned_cols=56 Identities=16% Similarity=0.126 Sum_probs=40.5
Q ss_pred eEEEEeecCCCccCCC--CCHHHHHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 2 VIMLIGNKSDLDARRE--VKKEEGEVFARE---HGLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 2 ~~~lvgnK~Dl~~~~~--v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
|+++|+||+|+.+... ...++...+... .+.+++++||++|.|++++|+.+.+.+.
T Consensus 139 ~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 139 NIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp CEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 6899999999865321 122334444443 3568999999999999999999887653
No 352
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.41 E-value=0.00025 Score=59.89 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=38.0
Q ss_pred eEEEEeecCCCccCCCCC--HHHHHHHHHHh---CCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390 2 VIMLIGNKSDLDARREVK--KEEGEVFAREH---GLVFMETSAKLATNVEEAFIDTAKEI 56 (245)
Q Consensus 2 ~~~lvgnK~Dl~~~~~v~--~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~f~~l~~~~ 56 (245)
|+++|+||+|+.+..... .++...+.... +.+++++||++|.|++++|+.+.+.+
T Consensus 131 ~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 131 NLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp CEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 789999999986432111 11112222211 56799999999999999999998765
No 353
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.0024 Score=53.19 Aligned_cols=109 Identities=12% Similarity=0.005 Sum_probs=60.9
Q ss_pred CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhh----h---hHhhccCCcEEEEEEeCCChhh-HHHHHHHHHHHH
Q psy13390 93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRS----I---TRSYYRGAAGALLVYDITRRET-FNHLTTWLEDAR 164 (245)
Q Consensus 93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~---~~~~~~~~d~vi~v~d~~~~~s-~~~~~~~~~~~~ 164 (245)
...+-.++|.....-.+.....++.|+||||...-.. + .-..++.||++++|+|++++.. ++.+...+..+.
T Consensus 98 ~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~ 177 (376)
T 4a9a_A 98 EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVG 177 (376)
T ss_dssp CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTT
T ss_pred cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhh
Confidence 3344445555555333333335689999999743211 1 1235678999999999998743 222222332221
Q ss_pred hhcCCCCeEEEEEeCCCCcc--------CcccCHHHHHHHHHHcCC
Q psy13390 165 QHSNSNMVIMLIGNKSDLDA--------RREVKKEEGEVFAREHGL 202 (245)
Q Consensus 165 ~~~~~~~piivv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~ 202 (245)
... .+.|.+++.||.|... ......++.+.+...+.+
T Consensus 178 ~~l-~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l 222 (376)
T 4a9a_A 178 IRL-NKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI 222 (376)
T ss_dssp EEE-TCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC
T ss_pred Hhh-ccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc
Confidence 111 4578889999999631 123455555555554443
No 354
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.35 E-value=0.00022 Score=60.27 Aligned_cols=56 Identities=14% Similarity=-0.012 Sum_probs=42.9
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
.|.+||+||+|+... ...++...+....+..++.+||+++.|++++|+.+++.+..
T Consensus 270 ~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 270 RPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp SCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHh
Confidence 378999999998643 12333344445557789999999999999999999998854
No 355
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.33 E-value=2.2e-05 Score=60.04 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=13.6
Q ss_pred CeEEEEeecCCCccCC
Q psy13390 1 MVIMLIGNKSDLDARR 16 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~ 16 (245)
+|++|||||+||...+
T Consensus 116 ~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 116 PSLLIACNKQDIAMAK 131 (214)
T ss_dssp CEEEEEEECTTSTTCC
T ss_pred CCEEEEEECCCCCCcc
Confidence 5899999999997654
No 356
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.29 E-value=0.00014 Score=60.26 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=39.1
Q ss_pred eEEEEeecCCCccCCCCCHHHHHHHHHH----------hCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 2 VIMLIGNKSDLDARREVKKEEGEVFARE----------HGLVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 2 ~~~lvgnK~Dl~~~~~v~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
|+++|.||+|+.+...... ....+... ++.+++++||++|.|+++++..+.+.+..
T Consensus 219 p~ivVlNK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 219 ADIVVVNKADGEHHKEARL-AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CSEEEEECCCGGGHHHHHH-HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCcChhHHHH-HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 7799999999864321111 11222222 14679999999999999999999887754
No 357
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.27 E-value=0.00032 Score=58.32 Aligned_cols=59 Identities=20% Similarity=0.007 Sum_probs=42.4
Q ss_pred CeEEEEeecCCCccCCCC-CHHHHHHHHHHh-C--CcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREV-KKEEGEVFAREH-G--LVFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v-~~~~~~~~~~~~-~--~~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
.|+++|+||+|+...... ..+.+..++..+ . ..++++||++|.|++++|..+.+.+...
T Consensus 293 ~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 293 KPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp CCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 489999999998653310 012334455655 3 3689999999999999999998877554
No 358
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.26 E-value=0.00035 Score=55.02 Aligned_cols=26 Identities=15% Similarity=0.008 Sum_probs=23.2
Q ss_pred CcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 32 LVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 32 ~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
.+++++||++|.|++++|..+.+.+.
T Consensus 231 ~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 231 VRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp CCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccceEEEecCcccHHHHHHHHHHHhc
Confidence 47899999999999999999988764
No 359
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.21 E-value=0.00015 Score=62.78 Aligned_cols=47 Identities=15% Similarity=0.095 Sum_probs=32.9
Q ss_pred eEEEEeecCCCccCCCCCHHHHHH----HHHHh-----CCcEEEecccCCCcHHHH
Q psy13390 2 VIMLIGNKSDLDARREVKKEEGEV----FAREH-----GLVFMETSAKLATNVEEA 48 (245)
Q Consensus 2 ~~~lvgnK~Dl~~~~~v~~~~~~~----~~~~~-----~~~~~~~Sa~~~~~i~~~ 48 (245)
|+++|+||+|+.+.++...++... +.... +.+++++||++|.|++++
T Consensus 173 ~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 173 NLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred cEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 589999999997654444443333 33333 346899999999999853
No 360
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.11 E-value=0.00066 Score=58.75 Aligned_cols=102 Identities=13% Similarity=0.061 Sum_probs=61.7
Q ss_pred EEEEEEEcCCChhhhhh-hhH---hh--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEeCCCCccC
Q psy13390 113 QIKLQIWDTAGQEAFRS-ITR---SY--YRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVI-MLIGNKSDLDAR 185 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~-~~~---~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ivv~nK~Dl~~~ 185 (245)
.+.+.|+||||...... ++. .. +..+|.+++|+|++...... .....+.. .+|+ ++|.||+|....
T Consensus 183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLDGHAK 255 (504)
T ss_dssp TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTTSCCC
T ss_pred CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCccccc
Confidence 35699999999754321 111 11 23789999999998754321 11222222 1565 889999997532
Q ss_pred cccCHHHHHHHHHHcCCcE------------------EEeccCCCCC-HHHHHHHHHHH
Q psy13390 186 REVKKEEGEVFAREHGLVF------------------METSAKLATN-VEEAFIDTAKE 225 (245)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~~~~i~~~ 225 (245)
.. .........+.|+ +.+|+.+|.| +.++++++.+.
T Consensus 256 ~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 256 GG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred hH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 21 1222233344443 4478999999 98888888755
No 361
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.05 E-value=0.00012 Score=63.92 Aligned_cols=55 Identities=24% Similarity=0.131 Sum_probs=38.2
Q ss_pred CeEEEEeecCCCccCCC--CCHHHHHHH---HHHh--CCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARRE--VKKEEGEVF---AREH--GLVFMETSAKLATNVEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~--v~~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~~f~~l~~~~ 56 (245)
+|+++|+||+|+.+.+. +..+ ...+ +..+ ..+++++||++|.|++++|+.+...+
T Consensus 105 vPiIVViNKiDl~~~~~~~v~~~-l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 105 VPIVLAINKCDKAEADPEKVKKE-LLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp CCEEECCBSGGGTTTSCCSSSSH-HHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred CcEEEEEecccccccchHHHHHH-HHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 58999999999874322 1111 1111 1122 24799999999999999999998765
No 362
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.02 E-value=0.00036 Score=58.18 Aligned_cols=56 Identities=7% Similarity=-0.014 Sum_probs=39.8
Q ss_pred eE-EEEee-cCCCccCCCCCH--HHHHHHHHHhC---CcEEE--ecccC---CCcHHHHHHHHHHHHHH
Q psy13390 2 VI-MLIGN-KSDLDARREVKK--EEGEVFAREHG---LVFME--TSAKL---ATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 2 ~~-~lvgn-K~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~--~Sa~~---~~~i~~~f~~l~~~~~~ 58 (245)
|. ++|+| |+|+ +.+.+.. ++...+.+..+ .++++ +||++ +.|++++|..+.+.+..
T Consensus 113 ~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 113 KHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp CEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred CeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 55 88888 9998 4322221 33444444433 57999 99999 99999999999887654
No 363
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.98 E-value=6.3e-05 Score=60.61 Aligned_cols=56 Identities=16% Similarity=-0.002 Sum_probs=38.2
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHH--hC-CcEEEecccCCCcHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFARE--HG-LVFMETSAKLATNVEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~f~~l~~~~ 56 (245)
.|+++|+||+|+.+.+....+........ .+ .+++++||++|.|++++|..+.+..
T Consensus 193 ~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 193 QRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp SSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred CeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 48999999999976544333322210001 12 2578899999999999999998754
No 364
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.92 E-value=0.00011 Score=58.58 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=28.8
Q ss_pred CeEEEEeecCCCccCCCCC--HHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVK--KEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 55 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~ 55 (245)
+|+++|+||+|+....... .+.........++.++++||+++.++++++..+.+.
T Consensus 145 ~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 145 VNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp SCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred CCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 5899999999975322211 122344445678889999999999999988777653
No 365
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.91 E-value=0.0015 Score=57.02 Aligned_cols=26 Identities=23% Similarity=-0.044 Sum_probs=22.8
Q ss_pred cEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 33 VFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 33 ~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
+++.+||++|.||+++|+.+++.+..
T Consensus 252 PV~~gSA~~~~GV~~Lld~i~~~~p~ 277 (528)
T 3tr5_A 252 PIFFGSAINNFGVGELLDAFVKEAPP 277 (528)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred EEEeccccCCccHHHHHHHHHHhCCC
Confidence 57889999999999999999987743
No 366
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.91 E-value=0.00033 Score=55.25 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=39.0
Q ss_pred eEEEEeecCCCccCCCCCH-------HHHHHHHHHhCCc---E--EEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 2 VIMLIGNKSDLDARREVKK-------EEGEVFAREHGLV---F--METSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 2 ~~~lvgnK~Dl~~~~~v~~-------~~~~~~~~~~~~~---~--~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+++++.||+|+... .+.. +++..++...+.. | +++||++|.|++++|..+.+.+...
T Consensus 141 ~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 141 TIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp EEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 34455559999743 2222 2344566666643 2 7899999999999999999887543
No 367
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.90 E-value=0.00039 Score=58.57 Aligned_cols=56 Identities=21% Similarity=0.151 Sum_probs=39.6
Q ss_pred Ce-EEEEeecCCCccCCC---CCHHHHHHHHHHhC-----CcEEEecccCCCc----------HHHHHHHHHHHH
Q psy13390 1 MV-IMLIGNKSDLDARRE---VKKEEGEVFAREHG-----LVFMETSAKLATN----------VEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~-~~lvgnK~Dl~~~~~---v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~----------i~~~f~~l~~~~ 56 (245)
+| +++|+||+|+.+... ...++...+++..+ .+++++||++|.| +.++|+.+.+.+
T Consensus 119 vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 119 VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred CCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 36 689999999864211 11235566777665 5799999999775 888888877655
No 368
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.89 E-value=0.00064 Score=51.49 Aligned_cols=56 Identities=9% Similarity=-0.022 Sum_probs=40.8
Q ss_pred CeEEEEeecCCCccCC--CCCHHHHHHHHHHhC--CcEEEecccCCCcHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARR--EVKKEEGEVFAREHG--LVFMETSAKLATNVEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~--~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~f~~l~~~~ 56 (245)
+|+++|+||+|+.... +...+.+..++...+ ..++++||+++.|++++|..+.+.+
T Consensus 138 ~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 138 IAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 4788999999975421 112345555555554 4688999999999999999888765
No 369
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.84 E-value=0.0035 Score=55.48 Aligned_cols=26 Identities=12% Similarity=0.004 Sum_probs=23.4
Q ss_pred cEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 33 VFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 33 ~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
+++++||++|.|++++++.+...+..
T Consensus 193 pvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 193 SIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred eEEEEeccCCCCchhHHHHHHhhccc
Confidence 68999999999999999999887754
No 370
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.82 E-value=0.00026 Score=60.36 Aligned_cols=50 Identities=28% Similarity=0.210 Sum_probs=36.4
Q ss_pred eEEEEeecCCCccCCC--C--CHHHHHHHHHHhC-----CcEEEecccCCCcHHHHHHH
Q psy13390 2 VIMLIGNKSDLDARRE--V--KKEEGEVFAREHG-----LVFMETSAKLATNVEEAFID 51 (245)
Q Consensus 2 ~~~lvgnK~Dl~~~~~--v--~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~f~~ 51 (245)
|+++|+||+|+.+... + ..++...+++.++ .+++++||++|.|++++|..
T Consensus 159 ~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 159 HIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp EEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred eEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 5899999999865321 1 1244556666677 57999999999999986543
No 371
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.78 E-value=0.00049 Score=58.07 Aligned_cols=44 Identities=23% Similarity=0.189 Sum_probs=30.8
Q ss_pred Ce-EEEEeecCCCccCCC-C--CHHHHHHHHHHhC-----CcEEEecccCCCc
Q psy13390 1 MV-IMLIGNKSDLDARRE-V--KKEEGEVFAREHG-----LVFMETSAKLATN 44 (245)
Q Consensus 1 ~~-~~lvgnK~Dl~~~~~-v--~~~~~~~~~~~~~-----~~~~~~Sa~~~~~ 44 (245)
+| +++|+||+|+.+.+. . ..++...++...+ .+++++||++|.|
T Consensus 128 ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 128 VPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp CCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred CCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 46 889999999864211 1 1234556666665 5799999999988
No 372
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.78 E-value=9.4e-05 Score=64.00 Aligned_cols=54 Identities=26% Similarity=0.307 Sum_probs=36.7
Q ss_pred CeEEEEeecCCCccC--CCCCHH--HHHHHHHHhC--CcEEEecccCCCcHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDAR--REVKKE--EGEVFAREHG--LVFMETSAKLATNVEEAFIDTAK 54 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~--~~v~~~--~~~~~~~~~~--~~~~~~Sa~~~~~i~~~f~~l~~ 54 (245)
+|+++|+||+|+... +.+..+ +...++..++ .+++++||++|.|++++|+.++.
T Consensus 104 vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 104 VPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp CCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred ceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 589999999999642 111111 0011122233 68999999999999999999875
No 373
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.68 E-value=0.0019 Score=57.99 Aligned_cols=27 Identities=7% Similarity=-0.116 Sum_probs=24.0
Q ss_pred CcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 32 LVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 32 ~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
.+++++||++|.||+++|+.+++.+..
T Consensus 248 ~pv~~~SA~~~~Gv~~Ll~~i~~~lp~ 274 (665)
T 2dy1_A 248 YPVALASGEREIGVLPLLELILEALPS 274 (665)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred eEEEEeecccCcCHHHHHHHHHHhCCC
Confidence 468999999999999999999988753
No 374
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.67 E-value=0.0026 Score=49.41 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=40.0
Q ss_pred eEEEEeecCCCccCCCCC------HHHHHHHHHHhCCcEEEecccCC-----CcHHHHHHHHHHHHHH
Q psy13390 2 VIMLIGNKSDLDARREVK------KEEGEVFAREHGLVFMETSAKLA-----TNVEEAFIDTAKEIYE 58 (245)
Q Consensus 2 ~~~lvgnK~Dl~~~~~v~------~~~~~~~~~~~~~~~~~~Sa~~~-----~~i~~~f~~l~~~~~~ 58 (245)
|+++|+||+|+...+.+. .+....+++..+..++.+++..+ .++.++|..+.+.+.+
T Consensus 147 ~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 147 FMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp GEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 799999999986554443 24567788888888877776644 7899999888776643
No 375
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.63 E-value=0.00036 Score=59.51 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=36.0
Q ss_pred eEEEEeecCCCccCC--C----CCHHHHHHHHHHhC-----CcEEEecccCCCcHHHHHH
Q psy13390 2 VIMLIGNKSDLDARR--E----VKKEEGEVFAREHG-----LVFMETSAKLATNVEEAFI 50 (245)
Q Consensus 2 ~~~lvgnK~Dl~~~~--~----v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~f~ 50 (245)
|+++|+||+|+.+.. + ...++...++...+ .+++++||++|.|+.+++.
T Consensus 146 ~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 146 QLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred eEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 578999999986521 1 12345666777766 5799999999999987654
No 376
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=96.63 E-value=0.00082 Score=57.35 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=33.2
Q ss_pred EEEEeecCCCccCC--C----CCHHHHHHHHHHhC------CcEEEecccCCCcHHHHHH
Q psy13390 3 IMLIGNKSDLDARR--E----VKKEEGEVFAREHG------LVFMETSAKLATNVEEAFI 50 (245)
Q Consensus 3 ~~lvgnK~Dl~~~~--~----v~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~f~ 50 (245)
+++|+||+|+.... + ...++...+++..+ .+++++||++|.|+++++.
T Consensus 158 iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 158 LIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 89999999985311 1 11233444555554 3699999999999999765
No 377
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.00074 Score=60.00 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=33.6
Q ss_pred eEEEEeecCCCccCCCCCHH----HHHHHHHHhC-----CcEEEecccCCCcHHHHH
Q psy13390 2 VIMLIGNKSDLDARREVKKE----EGEVFAREHG-----LVFMETSAKLATNVEEAF 49 (245)
Q Consensus 2 ~~~lvgnK~Dl~~~~~v~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~f 49 (245)
|+++|+||+|+.+.++...+ +...+....+ .+++++||++|.||.++.
T Consensus 307 ~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 307 NLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp EEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred eEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 58999999998764332222 2334444444 479999999999998763
No 378
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.48 E-value=0.00056 Score=58.84 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=34.5
Q ss_pred Ce-EEEEeecCCCccCC------CCCHHHHHHHHHHh-C------CcEEEecccCCCcHHHHH
Q psy13390 1 MV-IMLIGNKSDLDARR------EVKKEEGEVFAREH-G------LVFMETSAKLATNVEEAF 49 (245)
Q Consensus 1 ~~-~~lvgnK~Dl~~~~------~v~~~~~~~~~~~~-~------~~~~~~Sa~~~~~i~~~f 49 (245)
+| +++|+||+|+.... ....++...+++.. + .+++++||++|.|+.++|
T Consensus 181 vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 181 INHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 35 89999999985311 11123455666665 3 459999999999999876
No 379
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.45 E-value=0.0024 Score=60.24 Aligned_cols=56 Identities=20% Similarity=0.076 Sum_probs=40.0
Q ss_pred Ce-EEEEeecCCCccCCCC---CHHHHHHHHHHhC-----CcEEEecccCC--------CcHHHHHHHHHHHH
Q psy13390 1 MV-IMLIGNKSDLDARREV---KKEEGEVFAREHG-----LVFMETSAKLA--------TNVEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~-~~lvgnK~Dl~~~~~v---~~~~~~~~~~~~~-----~~~~~~Sa~~~--------~~i~~~f~~l~~~~ 56 (245)
+| +++|+||+|+.+.+.. ..++...++...+ .+++++||++| .||.++|+.+.+.+
T Consensus 412 IP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 412 VPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp CSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred CCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 46 7899999998752211 1245566777665 57999999999 46888888877655
No 380
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.31 E-value=0.0028 Score=52.16 Aligned_cols=56 Identities=16% Similarity=0.013 Sum_probs=36.6
Q ss_pred eEEEEeecCCCccCCCCCH--HHHHHHHHHh-------CCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 2 VIMLIGNKSDLDARREVKK--EEGEVFAREH-------GLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 2 ~~~lvgnK~Dl~~~~~v~~--~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
|.++|.||+|+.....+.. ++.......+ ..+++++||++|.|++++++.+.+.+.
T Consensus 196 p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 196 ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred cCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 6789999999854211110 0111111121 346889999999999999999988663
No 381
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.27 E-value=0.0015 Score=56.05 Aligned_cols=47 Identities=26% Similarity=0.227 Sum_probs=33.4
Q ss_pred eEEEEeecCCCccCCC----CCHHHHHHHHHHhC-----CcEEEecccCCCcHHHH
Q psy13390 2 VIMLIGNKSDLDARRE----VKKEEGEVFAREHG-----LVFMETSAKLATNVEEA 48 (245)
Q Consensus 2 ~~~lvgnK~Dl~~~~~----v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 48 (245)
++++|+||+|+.+... ...++...+++..+ .+++++||++|.|+.++
T Consensus 147 ~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 147 QLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp EEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred eEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 4899999999863211 11234556666665 57999999999999755
No 382
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.23 E-value=0.0026 Score=53.29 Aligned_cols=38 Identities=16% Similarity=0.046 Sum_probs=24.0
Q ss_pred EEEEEcCCChhhhhh-------hhHhhccCCcEEEEEEeCCChhh
Q psy13390 115 KLQIWDTAGQEAFRS-------ITRSYYRGAAGALLVYDITRRET 152 (245)
Q Consensus 115 ~~~l~Dt~G~~~~~~-------~~~~~~~~~d~vi~v~d~~~~~s 152 (245)
.+.+|||||+..... .+..+++.+|++++|+|+++..+
T Consensus 87 ~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 87 FLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp EEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred ccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 599999999876543 34568899999999999986433
No 383
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.22 E-value=0.077 Score=44.37 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=29.3
Q ss_pred CCeEEEEEeCCCCcc--CcccCHHHHHHHHHHcC--CcEEEeccCC
Q psy13390 170 NMVIMLIGNKSDLDA--RREVKKEEGEVFAREHG--LVFMETSAKL 211 (245)
Q Consensus 170 ~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 211 (245)
..|++.++|+.|..- ...-..+..+.++...+ .+++.+||+.
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~ 269 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF 269 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence 489999999998421 11122456677776665 7899999886
No 384
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.01 E-value=0.00094 Score=55.39 Aligned_cols=56 Identities=11% Similarity=-0.079 Sum_probs=43.3
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~ 56 (245)
.|+++|+||+|+.+.+....+.+..++..++.+|+++|+.++.++++.+.......
T Consensus 204 ~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~ 259 (360)
T 3t34_A 204 DRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARK 259 (360)
T ss_dssp TTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred CCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHHH
Confidence 37899999999987666555555555556678899999999999998876655544
No 385
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.98 E-value=0.024 Score=48.16 Aligned_cols=92 Identities=16% Similarity=0.102 Sum_probs=56.5
Q ss_pred EEEEEEcCCChhhhh-----hhhH-hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcc
Q psy13390 114 IKLQIWDTAGQEAFR-----SITR-SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARRE 187 (245)
Q Consensus 114 ~~~~l~Dt~G~~~~~-----~~~~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~ 187 (245)
+.+.|+||+|..... .+.. .....+|.+++|+|++...... .....+.... .+..+|.||+|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~~---~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEAT---PIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHSC---TTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhhC---CCeEEEEECCCCccc--
Confidence 568999999964322 1221 2344689999999998653322 2223333222 345688999997532
Q ss_pred cCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q psy13390 188 VKKEEGEVFAREHGLVFMETSAKLATNVEE 217 (245)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 217 (245)
...+.......+.|+.+++. |+++++
T Consensus 255 --gG~~ls~~~~~g~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 255 --GGGALSAVAATGAPIKFIGT--GEKIDD 280 (443)
T ss_dssp --HHHHHHHHHTTCCCEEEEEC--SSSTTC
T ss_pred --ccHHHHHHHHHCCCEEEEEc--CCChHH
Confidence 23345555667899888875 776653
No 386
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=95.92 E-value=0.0027 Score=56.26 Aligned_cols=44 Identities=30% Similarity=0.225 Sum_probs=29.0
Q ss_pred EEEEeecCCCccCCCCCH----HHHHHHH-HHhCC-----cEEEecccCCCcHH
Q psy13390 3 IMLIGNKSDLDARREVKK----EEGEVFA-REHGL-----VFMETSAKLATNVE 46 (245)
Q Consensus 3 ~~lvgnK~Dl~~~~~v~~----~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~ 46 (245)
+++|+||+|+.+...... ++...+. +..+. +++++||++|.||.
T Consensus 318 iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 318 IVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred EEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 899999999865221111 2223333 33344 69999999999998
No 387
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.65 E-value=0.014 Score=43.37 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=28.7
Q ss_pred CeEEEEeecCCCccC------------CCCCHHHHHHHHHHhCCcEE
Q psy13390 1 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGLVFM 35 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~~~~ 35 (245)
+|+++||||+|+.+. +.+..+++..++..++...+
T Consensus 123 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 169 (194)
T 2atx_A 123 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY 169 (194)
T ss_dssp CCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred CCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEE
Confidence 589999999999753 57888889999988876555
No 388
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.63 E-value=0.02 Score=47.23 Aligned_cols=55 Identities=13% Similarity=0.016 Sum_probs=35.9
Q ss_pred eEEEEeecCCCccCCCCCHHHHHHHHH----------HhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 2 VIMLIGNKSDLDARREVKKEEGEVFAR----------EHGLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 2 ~~~lvgnK~Dl~~~~~v~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
|.++|.||+|+.+.... ......+.. .+..+++.+||++|.|+++++..+.+.+.
T Consensus 214 ~~ivVlNK~Dl~~~~~~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 214 ADLVAVTKSDGDLIVPA-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CSEEEECCCSGGGHHHH-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCEEEEeeecCCCchhH-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 56889999998532110 001122222 12346788999999999999999987653
No 389
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.61 E-value=0.0087 Score=49.44 Aligned_cols=49 Identities=12% Similarity=0.011 Sum_probs=34.3
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHH---HhCCcEEEecccCCCcHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAR---EHGLVFMETSAKLATNVEEAFID 51 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~f~~ 51 (245)
+|.+||.||+||.+... .+....|.. ..|.+.+.+||+++.|++++...
T Consensus 161 ~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 161 VEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp CEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHH
T ss_pred CCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHh
Confidence 47899999999965321 111333433 45788899999999999987653
No 390
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.58 E-value=0.013 Score=45.80 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=40.2
Q ss_pred CeEEEEeecCCCccCCC------CCHHHHHHHHHHhCCcEEEecccC-----CCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARRE------VKKEEGEVFAREHGLVFMETSAKL-----ATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~------v~~~~~~~~~~~~~~~~~~~Sa~~-----~~~i~~~f~~l~~~~~~ 58 (245)
.|++||+||.||..... ...+....+....+..+..+++.. +.||.+++..+.+.+.+
T Consensus 140 ~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 140 WMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp GEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 38999999999965321 011335667777787766566544 58999999988877754
No 391
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.49 E-value=0.0025 Score=51.64 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=34.4
Q ss_pred CeEEEEeecCCCccCCCC--CHHHHHHHHHHhCCcEEEecccCCCcHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREV--KKEEGEVFAREHGLVFMETSAKLATNVEEAFID 51 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~ 51 (245)
+|.+||.||+||.+.... ..+....+....|...+.+||+++.|+++++..
T Consensus 118 ~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 118 IQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp CEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGG
T ss_pred CCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHhh
Confidence 478999999999754210 012223333345788899999999998877643
No 392
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=95.46 E-value=0.011 Score=44.89 Aligned_cols=55 Identities=11% Similarity=-0.043 Sum_probs=38.2
Q ss_pred CeEEEEeecC-CCccCCCCCHHHHHHHHH----HhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKS-DLDARREVKKEEGEVFAR----EHGLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~-Dl~~~~~v~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+|+++.+||. |++ ...+..+....-. ......+.|||++|+|+.+-+++|++.+.
T Consensus 163 apLLVlANKqqDlp--~Ams~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 163 RPLLVLSCISQGDV--KRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp SCEEEEEEESSTTS--CBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred CeEEEEeCCCcCcc--CCCCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 5899999996 674 3455544332211 11234799999999999999999987663
No 393
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.44 E-value=0.013 Score=47.30 Aligned_cols=57 Identities=12% Similarity=-0.045 Sum_probs=35.0
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccC------CCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKL------ATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~~f~~l~~~~~ 57 (245)
.|+++|+||+|+...+....+........++..|+++|+.. +.|+.+++..+.+.+.
T Consensus 199 ~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 199 KRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp SSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 48999999999875543222222210011225677776654 6788888887776653
No 394
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.43 E-value=0.044 Score=44.05 Aligned_cols=93 Identities=17% Similarity=0.083 Sum_probs=58.2
Q ss_pred EEEEEEEcCCChhh--hhh-hhH-----hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCc
Q psy13390 113 QIKLQIWDTAGQEA--FRS-ITR-----SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV-IMLIGNKSDLD 183 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~--~~~-~~~-----~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~ 183 (245)
.+.+.|+||||... ... +.. .....+|.+++|+|++... +.......+.. ..| ..+|.||+|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence 34689999999866 321 111 2345799999999987432 22222222322 245 67889999964
Q ss_pred cCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q psy13390 184 ARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218 (245)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 218 (245)
. .......+....+.|+.+++ +|++++++
T Consensus 253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 253 A----KGGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp T----THHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred c----chHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 2 22344556677889988876 57777654
No 395
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.31 E-value=0.00035 Score=57.83 Aligned_cols=54 Identities=15% Similarity=0.038 Sum_probs=35.6
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHH--HHHHhC-CcEEEecccCCCcHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEV--FAREHG-LVFMETSAKLATNVEEAFIDTAK 54 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~~f~~l~~ 54 (245)
.|+++|+||+|+.+.+....+.... +....+ ..++++||+++.|++++|..+.+
T Consensus 198 ~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 198 QRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp TTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred CceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3789999999987544321211110 000122 24678999999999999999876
No 396
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.30 E-value=0.018 Score=43.15 Aligned_cols=35 Identities=34% Similarity=0.466 Sum_probs=28.5
Q ss_pred CeEEEEeecCCCccC------------CCCCHHHHHHHHHHhCCcEE
Q psy13390 1 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGLVFM 35 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~~~~ 35 (245)
+|+++|+||+|+.+. +.+..+++..++...+...+
T Consensus 130 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (201)
T 2gco_A 130 VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY 176 (201)
T ss_dssp CCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred CCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEE
Confidence 589999999999764 56888888888888876655
No 397
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=95.15 E-value=0.013 Score=52.88 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=38.1
Q ss_pred CeEEEEeecCCCccCCCCCHHH----------HHH-----HHHHh--------CCcEEEeccc--------------CCC
Q psy13390 1 MVIMLIGNKSDLDARREVKKEE----------GEV-----FAREH--------GLVFMETSAK--------------LAT 43 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~----------~~~-----~~~~~--------~~~~~~~Sa~--------------~~~ 43 (245)
.|+++|+||+|+...+.++.++ ... +.... ...++++||+ ++.
T Consensus 231 ~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~ 310 (695)
T 2j69_A 231 LTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGT 310 (695)
T ss_dssp CCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTS
T ss_pred CCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhcc
Confidence 3789999999986544222211 111 11111 2368999999 999
Q ss_pred cHHHHHHHHHHHHH
Q psy13390 44 NVEEAFIDTAKEIY 57 (245)
Q Consensus 44 ~i~~~f~~l~~~~~ 57 (245)
|+++++..+.+.+.
T Consensus 311 Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 311 GFPKFMDSLNTFLT 324 (695)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987663
No 398
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=94.91 E-value=0.054 Score=43.26 Aligned_cols=55 Identities=9% Similarity=-0.077 Sum_probs=38.2
Q ss_pred CeEEEEeec-CCCccCCCCCHHHHHHHHHH----hCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNK-SDLDARREVKKEEGEVFARE----HGLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 1 ~~~~lvgnK-~Dl~~~~~v~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+|+++.+|| -|++ ...+..+....-.. .....+.|||.+|+|+.+-++.+++.+.
T Consensus 248 apLLVfANKkQDlp--~Ams~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 248 RPLLVLSCISQGDV--KRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp CCEEEEEEESSTTS--CBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred CeEEEEeCCccccc--CCCCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 589999997 4874 34455443221110 1234799999999999999999998763
No 399
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.70 E-value=0.0057 Score=43.75 Aligned_cols=33 Identities=18% Similarity=0.090 Sum_probs=26.9
Q ss_pred HHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHH
Q psy13390 23 GEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEI 56 (245)
Q Consensus 23 ~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~ 56 (245)
+..++ .++. +++++||++|.|++++|..+++.+
T Consensus 127 ~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 127 LGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp CGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred HHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 34455 5676 799999999999999999998764
No 400
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.66 E-value=0.039 Score=45.22 Aligned_cols=56 Identities=9% Similarity=0.019 Sum_probs=35.1
Q ss_pred eEEEEeecCCCccCCCCCHHHHHHHHHHh----------CCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 2 VIMLIGNKSDLDARREVKKEEGEVFAREH----------GLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 2 ~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~----------~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+.++|.||+|+.............+.... ..+++.+||+++.|++++++.+.+...
T Consensus 195 ~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 195 ADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 34677799996432111111122333221 346788999999999999998887653
No 401
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.62 E-value=0.012 Score=42.92 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=26.6
Q ss_pred CeEEEEeecCCCccCCC----------CCHHHHHHHHHHhCC
Q psy13390 1 MVIMLIGNKSDLDARRE----------VKKEEGEVFAREHGL 32 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~ 32 (245)
+|+++|+||+|+.+.+. +..+++..++..++.
T Consensus 113 ~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 154 (182)
T 3bwd_D 113 VPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA 154 (182)
T ss_dssp CCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC
T ss_pred CCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC
Confidence 58999999999976544 578889999998886
No 402
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.57 E-value=0.19 Score=42.63 Aligned_cols=85 Identities=16% Similarity=0.043 Sum_probs=49.9
Q ss_pred EEEEEEEcCCChhhhhh-----hhH-hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-e-EEEEEeCCCCcc
Q psy13390 113 QIKLQIWDTAGQEAFRS-----ITR-SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM-V-IMLIGNKSDLDA 184 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~-----~~~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-iivv~nK~Dl~~ 184 (245)
.+.+.|+||+|...... +.. ..+..+|.+++|+|++.+.. .......+ . ... | ..+|.||+|...
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~-~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---K-EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---H-TTSCSCEEEEEECSSSCS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---h-hcccCCeEEEEeCCCCcc
Confidence 35689999999754321 111 12336899999999876532 22222222 2 235 5 788999999743
Q ss_pred CcccCHHHHHHHHHHcCCcEEEec
Q psy13390 185 RREVKKEEGEVFAREHGLVFMETS 208 (245)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~S 208 (245)
.. .....+....+.|+.+++
T Consensus 253 ~~----g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 253 KG----GGALSAVAETKAPIKFIG 272 (432)
T ss_dssp TT----HHHHHHHHHSSCCEEEEC
T ss_pred ch----HHHHHHHHHHCCCEEEee
Confidence 21 223345566777766553
No 403
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.32 E-value=0.1 Score=44.20 Aligned_cols=92 Identities=17% Similarity=0.105 Sum_probs=56.1
Q ss_pred EEEEEEEcCCChhh--h-----hhhhH-hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q psy13390 113 QIKLQIWDTAGQEA--F-----RSITR-SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDA 184 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~--~-----~~~~~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 184 (245)
.+.+.|+||+|... . ..+.. ......+.+++|+|+....... .....+.... .+..+|.||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~~---~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQAS---PIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHHC---SSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhccc---CCcEEEEecccccc
Confidence 34578999999644 1 11211 1223579999999998653322 2223333322 35678999999642
Q ss_pred CcccCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q psy13390 185 RREVKKEEGEVFAREHGLVFMETSAKLATNVE 216 (245)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 216 (245)
....+.......+.|+.+++. |++++
T Consensus 253 ----~~G~als~~~~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 253 ----KGGGALSAVVATGATIKFIGT--GEKID 278 (433)
T ss_dssp ----CHHHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred ----cchHHHHHHHHHCCCEEEEEC--CCChH
Confidence 233455556667999888875 77764
No 404
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.18 E-value=0.12 Score=38.44 Aligned_cols=65 Identities=9% Similarity=-0.037 Sum_probs=47.0
Q ss_pred EEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEeCCCC
Q psy13390 114 IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS--NSNMVIMLIGNKSDL 182 (245)
Q Consensus 114 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl 182 (245)
+.+.++|+++.. .......+..+|.+++++..+.. + ..+...++.+.... .++.++.+|.|+.|.
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~ 142 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIE 142 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 568999999865 33445567789999999987644 4 66666666665543 245788999999985
No 405
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.51 E-value=0.037 Score=40.29 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=23.3
Q ss_pred CCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390 31 GLVFMETSAKLATNVEEAFIDTAKEIY 57 (245)
Q Consensus 31 ~~~~~~~Sa~~~~~i~~~f~~l~~~~~ 57 (245)
+.+++++||++|.||+++|..+++.+.
T Consensus 139 ~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 139 GHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp TEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 457899999999999999999988763
No 406
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.14 E-value=0.079 Score=39.49 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=19.5
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAR 28 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~ 28 (245)
+|+++||||+|+.+ .++.+++..++.
T Consensus 127 ~piilv~NK~Dl~~--~~~~~~~~~~~~ 152 (198)
T 1f6b_A 127 VPILILGNKIDRPE--AISEERLREMFG 152 (198)
T ss_dssp SCEEEEEECTTSTT--CCCHHHHHHHHT
T ss_pred CcEEEEEECCCccc--cCCHHHHHHHhC
Confidence 58999999999964 566776665543
No 407
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.95 E-value=0.046 Score=45.34 Aligned_cols=58 Identities=21% Similarity=0.215 Sum_probs=43.1
Q ss_pred CeEEEEeecCCCc--cC-CCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLD--AR-REVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 1 ~~~~lvgnK~Dl~--~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
.|+++|+||.|.. +. +....+....+++..+..++++||+...++.+++..-...+++
T Consensus 202 KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~~~~~~l~ 262 (368)
T 2dby_A 202 KPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGEEARELLA 262 (368)
T ss_dssp SCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHHHHHHHHH
T ss_pred CCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchHHHHHHHH
Confidence 3899999999842 21 1234566788888889999999999999998887765444443
No 408
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.94 E-value=0.029 Score=41.78 Aligned_cols=14 Identities=21% Similarity=0.007 Sum_probs=12.0
Q ss_pred CeEEEEeecCCCcc
Q psy13390 1 MVIMLIGNKSDLDA 14 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~ 14 (245)
+|++|||||+||.+
T Consensus 130 ~piilv~nK~Dl~~ 143 (196)
T 3llu_A 130 MNFEVFIHKVDGLS 143 (196)
T ss_dssp CEEEEEEECGGGSC
T ss_pred CcEEEEEeccccCc
Confidence 58999999999753
No 409
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.89 E-value=0.97 Score=34.46 Aligned_cols=87 Identities=10% Similarity=0.072 Sum_probs=57.9
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHH
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEE 192 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~ 192 (245)
.+.+.++|+++.. .......+..+|.+++++..+ ..++..+...++.+.....+...+-+|.|+.+... ....+
T Consensus 118 ~yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~- 191 (245)
T 3ea0_A 118 FYDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSD- 191 (245)
T ss_dssp HCSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHH-
T ss_pred hCCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHH-
Confidence 4568999998754 224455788899999999865 66777777777777655433456788999998532 23333
Q ss_pred HHHHHHHcCCcEEEe
Q psy13390 193 GEVFAREHGLVFMET 207 (245)
Q Consensus 193 ~~~~~~~~~~~~~~~ 207 (245)
.+....+.+++.+
T Consensus 192 --~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 192 --EIEKVIGRPISKR 204 (245)
T ss_dssp --HHHHHHTSCEEEE
T ss_pred --HHHHHhCCCeEEE
Confidence 3334456665543
No 410
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=92.73 E-value=0.021 Score=47.92 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=31.4
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHH---hCCcEEEecccCCCcHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFARE---HGLVFMETSAKLATNVEEAFI 50 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~f~ 50 (245)
.|+++|+||+|+. . .+....+... .+..++.+||+.+.++.+++.
T Consensus 215 kP~i~v~NK~D~~-~----~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 215 KPMVIAANKADAA-S----DEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp SCEEEEEECGGGS-C----HHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCEEEEEeCcccc-c----hHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 4899999999975 1 2223333333 367899999999888876543
No 411
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.40 E-value=0.86 Score=34.19 Aligned_cols=66 Identities=11% Similarity=0.010 Sum_probs=47.2
Q ss_pred EEEEEEEcCCCh-hhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390 113 QIKLQIWDTAGQ-EAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD 183 (245)
Q Consensus 113 ~~~~~l~Dt~G~-~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 183 (245)
.+.+.++||++. .. ......+..+|.+++++..+ ..++..+...+..+.... +.++.+|.|+.|..
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPY 133 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCT
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCc
Confidence 356889999876 32 23345778899999999865 556777777666666533 35688999999864
No 412
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.00 E-value=0.13 Score=37.93 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=17.5
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVF 26 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~ 26 (245)
+|+++||||+|+.+ .++.+++..+
T Consensus 125 ~piilv~NK~Dl~~--~~~~~~~~~~ 148 (190)
T 1m2o_B 125 VPFVILGNKIDAPN--AVSEAELRSA 148 (190)
T ss_dssp CCEEEEEECTTSTT--CCCHHHHHHH
T ss_pred CCEEEEEECCCCcC--CCCHHHHHHH
Confidence 58999999999965 4566555433
No 413
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=91.66 E-value=0.22 Score=44.86 Aligned_cols=27 Identities=11% Similarity=-0.095 Sum_probs=23.1
Q ss_pred CcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 32 LVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 32 ~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
.+.+..||++|.|++.+++.++..+..
T Consensus 256 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPs 282 (691)
T 1dar_A 256 TPVFLGSALKNKGVQLLLDAVVDYLPS 282 (691)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred eEEEEeecccCcCHHHHHHHHHHhCCC
Confidence 368889999999999999999887743
No 414
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.56 E-value=2 Score=34.11 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=53.5
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEE-EEEeCCCCccCcccCH
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSNMVIM-LIGNKSDLDARREVKK 190 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pii-vv~nK~Dl~~~~~~~~ 190 (245)
.+.+.|+||++..... .....+..+|.+++|...+ ..++..+...+..+.... ..+.+++ +|.|+.+-.
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~------- 226 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT------- 226 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------
Confidence 4568899998753322 1234678899999999764 567777777777666542 2456655 899999832
Q ss_pred HHHHHHHHHcCCcEE
Q psy13390 191 EEGEVFAREHGLVFM 205 (245)
Q Consensus 191 ~~~~~~~~~~~~~~~ 205 (245)
.....+....+.+++
T Consensus 227 ~~~~~~~~~~g~~v~ 241 (307)
T 3end_A 227 DEVDRFCKETNFRRL 241 (307)
T ss_dssp HHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCCce
Confidence 223444445565543
No 415
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=89.70 E-value=0.16 Score=44.19 Aligned_cols=46 Identities=24% Similarity=0.113 Sum_probs=29.8
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCc-----EEEecccCCCcHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLV-----FMETSAKLATNVEEA 48 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-----~~~~Sa~~~~~i~~~ 48 (245)
+|+++|+||+|+.... ..+....+...++.. +...|++++.|+.++
T Consensus 135 ipiivviNK~Dl~~~~--~~~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl 185 (529)
T 2h5e_A 135 TPILTFMNKLDRDIRD--PMELLDEVENELKIGCAPITWPIGCGKLFKGVYHL 185 (529)
T ss_dssp CCEEEEEECTTSCCSC--HHHHHHHHHHHHCCEEEESEEEESCGGGCCEEEET
T ss_pred CCEEEEEcCcCCcccc--HHHHHHHHHHHhCCCccceecceecccCcceeeeh
Confidence 5899999999986543 223345566666653 334677777666544
No 416
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=89.42 E-value=1.2 Score=34.58 Aligned_cols=65 Identities=11% Similarity=0.017 Sum_probs=46.7
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSD 181 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D 181 (245)
.+.+.++|+++.. .......+..+|.+++++..+ ..+...+...+..+.... .+.++.+|.|+.+
T Consensus 144 ~yD~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~-~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 144 KYDYIVIDTNPSL--DVTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLN-LFLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEECSSC--SHHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTT-CCCCEEEEEEEEC
T ss_pred CCCEEEEECcCCc--cHHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHh-ccCCEEEEEeccc
Confidence 3568899998754 233455677799999999975 456676766666665554 4567889999984
No 417
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=89.40 E-value=0.67 Score=41.85 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=23.3
Q ss_pred CcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 32 LVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 32 ~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
.+.+..||+++.|++.+++.++..+..
T Consensus 262 ~Pv~~gSa~~~~Gv~~LLd~i~~~lPs 288 (704)
T 2rdo_7 262 ILVTCGSAFKNKGVQAMLDAVIDYLPS 288 (704)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCCC
Confidence 468889999999999999999988753
No 418
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=89.13 E-value=2.2 Score=32.98 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=43.7
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHH---HhhcCCCCeEE-EEEeCCCCc
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA---RQHSNSNMVIM-LIGNKSDLD 183 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~---~~~~~~~~pii-vv~nK~Dl~ 183 (245)
.+.+.++|+++.... .....+..+|.+++++..+. .++..+...++.+ ......+.+++ +|.|+.|..
T Consensus 111 ~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 456899999876432 23345667999999999764 4555544444433 33223467774 899999853
No 419
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=88.51 E-value=2.2 Score=34.99 Aligned_cols=123 Identities=9% Similarity=0.035 Sum_probs=57.3
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-----------------CCC-----
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-----------------NSN----- 170 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-----------------~~~----- 170 (245)
.+.+.|+||+..- .......+..||.+|++...+ ..++..+...+..+.... .++
T Consensus 153 ~yD~VIID~pP~l--~~~~~~aL~~aD~viip~~~~-~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (361)
T 3pg5_A 153 RYDVIFFDVGPSL--GPFNRTVLLGCDAFVTPTATD-LFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKT 229 (361)
T ss_dssp CCSEEEEECCSCC--SHHHHHHHTTCSEEEEEECCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHT
T ss_pred CCCEEEEECCCCc--CHHHHHHHHHCCEEEEEecCC-hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccccccc
Confidence 4668999998653 344455677799999999875 555554444333322211 101
Q ss_pred ------------Ce-EEEEEeCCCCccCcc------cC---HHH-----------------------------HHHHHHH
Q psy13390 171 ------------MV-IMLIGNKSDLDARRE------VK---KEE-----------------------------GEVFARE 199 (245)
Q Consensus 171 ------------~p-iivv~nK~Dl~~~~~------~~---~~~-----------------------------~~~~~~~ 199 (245)
.. +=+|.|+.|...... .. .+. ....++.
T Consensus 230 ~~~~~~g~~~~~l~~lG~v~n~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~s~~~~aq~ 309 (361)
T 3pg5_A 230 RPLRLGGFDGEGLRYLGYTTLEYVKRRANGQEQLVGAFERFRGRFAAEAERISNSLSKHSNSTLLGHVPHMHSMPATAQD 309 (361)
T ss_dssp SSSCTTSSSSSCCEEEEEEECC-----------------TTHHHHHHHHHHHHHHSCSSCCCCEEEECC-----------
T ss_pred cccccccccccccceeeEEEEcchhhcCCCchhhhHHHHHHHHHHHHHHHhccccccCCCCccccccCCchhhHHHHHHH
Confidence 22 346788988653221 00 011 1122344
Q ss_pred cCCcEEEeccCC---------CCCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy13390 200 HGLVFMETSAKL---------ATNVEEAFIDTAKEIYEKIQEGVFDIT 238 (245)
Q Consensus 200 ~~~~~~~~Sa~~---------~~~i~~~~~~i~~~i~~~~~~~~~~~~ 238 (245)
.+.|+|.+++.+ ..+..+.|..+...+.+......++-.
T Consensus 310 ~~~Pi~~l~~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~~~~~~~~~ 357 (361)
T 3pg5_A 310 VHAPIMELSSSDRVRGAQINQRNAYAEKINSVAANVYKALFPNELEHH 357 (361)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHCCCC----
T ss_pred HCCCeEECchhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhc
Confidence 567888888755 558889999999999998877665543
No 420
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=88.27 E-value=0.13 Score=37.73 Aligned_cols=14 Identities=14% Similarity=0.102 Sum_probs=12.1
Q ss_pred CeEEEEeecCCCcc
Q psy13390 1 MVIMLIGNKSDLDA 14 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~ 14 (245)
+|+++|+||+|+.+
T Consensus 134 ~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 134 IPFTIVLTKMDKVK 147 (195)
T ss_dssp CCEEEEEECGGGSC
T ss_pred CCEEEEEEChhcCC
Confidence 58999999999864
No 421
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.79 E-value=0.69 Score=39.03 Aligned_cols=66 Identities=14% Similarity=0.054 Sum_probs=33.0
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCH--HHHHHHHHHcCCcEEEeccC
Q psy13390 140 GALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKK--EEGEVFAREHGLVFMETSAK 210 (245)
Q Consensus 140 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~ 210 (245)
+++|+.|+..+.+-.++ .+ +.... .++|+|+|.||+|.....++.. ..........|++++.+|.-
T Consensus 151 ~v~fI~d~~~~l~~~Di-ei---lk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDL-VT---MKKLD-SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp EEEEECCCC---CHHHH-HH---HHHTC-SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred EEEEEeCCCCCCCHHHH-HH---HHHHh-hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 36666776544333332 22 22222 5789999999999754332111 11111123357788888753
No 422
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=87.60 E-value=3.6 Score=31.68 Aligned_cols=82 Identities=10% Similarity=-0.063 Sum_probs=51.8
Q ss_pred EEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHH
Q psy13390 114 IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEG 193 (245)
Q Consensus 114 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 193 (245)
+.+.|+|+++... ......+..+|.+|+++..+ ..+...+...+..+.... ..++-+|.|+.+..... ...
T Consensus 111 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~----~~~ 181 (263)
T 1hyq_A 111 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLG--TKVLGVVVNRITTLGIE----MAK 181 (263)
T ss_dssp CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CEEEEEEEEEECTTTHH----HHH
T ss_pred CCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhcC--CCeeEEEEccCCccccc----chH
Confidence 5689999987543 33445677899999999865 556677766666665542 23556889999853211 233
Q ss_pred HHHHHHcCCcE
Q psy13390 194 EVFAREHGLVF 204 (245)
Q Consensus 194 ~~~~~~~~~~~ 204 (245)
..+....+.++
T Consensus 182 ~~~~~~~~~~~ 192 (263)
T 1hyq_A 182 NEIEAILEAKV 192 (263)
T ss_dssp HHHHHHTTSCE
T ss_pred HHHHHHhCCCe
Confidence 34444456553
No 423
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=87.35 E-value=4 Score=30.79 Aligned_cols=66 Identities=11% Similarity=-0.008 Sum_probs=46.0
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD 183 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 183 (245)
.+.+.++|+++... ......+..+|.++++...+ ..++..+...+..+.+.. ...+-+|.|+.+..
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKAG--LAILGFVLNRYGRS 176 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHTT--CEEEEEEEEEETSC
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhCC--CceEEEEEecCCcc
Confidence 35688999987543 33455778999999999865 556777777666665542 23456789999854
No 424
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=87.21 E-value=1.2 Score=40.21 Aligned_cols=27 Identities=7% Similarity=-0.102 Sum_probs=22.8
Q ss_pred cEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 33 VFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 33 ~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+.+..||.++.|++.+++.+++.+...
T Consensus 255 Pv~~gSA~~~~Gv~~LLd~i~~~lPsP 281 (693)
T 2xex_A 255 PVLCGTAFKNKGVQLMLDAVIDYLPSP 281 (693)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHSCCG
T ss_pred eEEEeecccCcCHHHHHHHHHHHCCCc
Confidence 578899999999999999998887543
No 425
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=86.62 E-value=0.18 Score=45.78 Aligned_cols=55 Identities=16% Similarity=0.059 Sum_probs=35.3
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHH--HHHHhC-CcEEEecccCCCcHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEV--FAREHG-LVFMETSAKLATNVEEAFIDTAKE 55 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~~f~~l~~~ 55 (245)
.|+++|.||+|+.+........... +....+ ...+.+||++|.|+++++..+.+.
T Consensus 218 ~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 218 QRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp SSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred CCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 4899999999987544332211110 000012 245679999999999999888763
No 426
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=86.06 E-value=2 Score=33.33 Aligned_cols=91 Identities=15% Similarity=0.164 Sum_probs=52.5
Q ss_pred eEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEeCCCCcc----Cc
Q psy13390 112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIM-LIGNKSDLDA----RR 186 (245)
Q Consensus 112 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~----~~ 186 (245)
..+.+.|+||++...........+..+|.+|++...+ ..+...+...++.+... +.+++ +|.|+.|... .+
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~ 202 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQ-ELTAVIVEKAINMAEET---NTSVLGLVENMSYFVCPNCGHK 202 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSS-SCCHHHHHHHHHHHHTT---TCCEEEEEETTCCEECTTTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCc-cchHHHHHHHHHHHHhC---CCCEEEEEECCCccCCcccccc
Confidence 3467899999875432112222233689999999876 34566666666655443 46766 8999987421 11
Q ss_pred -cc-CHHHHHHHHHHcCCcEEE
Q psy13390 187 -EV-KKEEGEVFAREHGLVFME 206 (245)
Q Consensus 187 -~~-~~~~~~~~~~~~~~~~~~ 206 (245)
.+ .......+....+.+++.
T Consensus 203 ~~~~~~~~~~~~~~~~g~~~~~ 224 (262)
T 2ph1_A 203 SYIFGEGKGESLAKKYNIGFFT 224 (262)
T ss_dssp ECTTCCCCHHHHHHHTTCSEEE
T ss_pred cccccccHHHHHHHHcCCCeEE
Confidence 11 111234455567777553
No 427
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=85.78 E-value=0.41 Score=35.24 Aligned_cols=15 Identities=27% Similarity=0.550 Sum_probs=12.8
Q ss_pred CeEEEEeecCCCccC
Q psy13390 1 MVIMLIGNKSDLDAR 15 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~ 15 (245)
+|+++|+||+|+.+.
T Consensus 131 ~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 131 AVLLVFANKQDMPNA 145 (192)
T ss_dssp CEEEEEEECTTSTTC
T ss_pred CeEEEEEECCCCCCC
Confidence 589999999999653
No 428
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=85.77 E-value=1.9 Score=33.06 Aligned_cols=67 Identities=9% Similarity=-0.011 Sum_probs=46.8
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC------CCCeEEEEEeCCCC
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN------SNMVIMLIGNKSDL 182 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~------~~~piivv~nK~Dl 182 (245)
.+.+.++|+++... ......+..+|.++++++.+ ..++..+...+..+..... ....+.+|.|++|.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 35689999987532 34556778999999999865 5677777766666544321 12467889999984
No 429
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=84.46 E-value=8.7 Score=32.18 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=58.2
Q ss_pred EEEEEcCCChhhh----hhhh-HhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc--c---
Q psy13390 115 KLQIWDTAGQEAF----RSIT-RSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD--A--- 184 (245)
Q Consensus 115 ~~~l~Dt~G~~~~----~~~~-~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~--~--- 184 (245)
.+.+||++|.... .... ..-+...+.+++ ++...+ .-+++ .+...+.. .+.|+++|.||.|+. +
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~-~kqrv-~la~aL~~---~~~p~~lV~tkpdlllLDEPt 194 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRF-KKNDI-DIAKAISM---MKKEFYFVRTKVDSDITNEAD 194 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCC-CHHHH-HHHHHHHH---TTCEEEEEECCHHHHHHHHHT
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCc-cHHHH-HHHHHHHh---cCCCeEEEEecCcccccCccc
Confidence 4789999985321 1111 122444566665 776521 11111 11222222 247999999999963 0
Q ss_pred --CcccCHH----HHHHHH----HHcC---CcEEEecc--CCCCCHHHHHHHHHHHHH
Q psy13390 185 --RREVKKE----EGEVFA----REHG---LVFMETSA--KLATNVEEAFIDTAKEIY 227 (245)
Q Consensus 185 --~~~~~~~----~~~~~~----~~~~---~~~~~~Sa--~~~~~i~~~~~~i~~~i~ 227 (245)
-...... ..+.+. ...+ -.++.+|+ .++.|++++.+.+.+.+.
T Consensus 195 sgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 195 GEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp TCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 0111222 223332 1222 24788999 777789999998887763
No 430
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=84.23 E-value=2.7 Score=35.39 Aligned_cols=92 Identities=21% Similarity=0.140 Sum_probs=51.8
Q ss_pred EEEEEEcCCChhhhhh--hhH----hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcc
Q psy13390 114 IKLQIWDTAGQEAFRS--ITR----SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARRE 187 (245)
Q Consensus 114 ~~~~l~Dt~G~~~~~~--~~~----~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~ 187 (245)
+.+.|+||+|...... +.. ...-.+|.+++|+|+... ++.......+.... + ..-+|.||.|....
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~l--~-i~GVIlTKlD~~~~-- 252 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEKV--G-VTGLVLTKLDGDAR-- 252 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHT--C-CCEEEEESGGGCSS--
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhcC--C-ceEEEEeCcCCccc--
Confidence 4588999999743321 111 122368999999998643 22223233333221 1 23568899996422
Q ss_pred cCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q psy13390 188 VKKEEGEVFAREHGLVFMETSAKLATNVEE 217 (245)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 217 (245)
...........+.|+.++. +|+.+++
T Consensus 253 --~g~alsi~~~~g~PI~flg--~Ge~~~d 278 (425)
T 2ffh_A 253 --GGAALSARHVTGKPIYFAG--VSEKPEG 278 (425)
T ss_dssp --CHHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred --HHHHHHHHHHHCCCEEEEe--CCCChhh
Confidence 1234455666788977765 3445554
No 431
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=84.03 E-value=3.2 Score=31.46 Aligned_cols=64 Identities=11% Similarity=0.008 Sum_probs=45.0
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSD 181 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D 181 (245)
.+.+.++||++.... .....+..+|.+++++..+ ..++..+....+.+.... -..+.+|.|+.+
T Consensus 131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~~--~~~~~~v~N~~~ 194 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDLG--IKKVRYVINKVR 194 (254)
T ss_dssp CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CSCEEEEEEEEC
T ss_pred CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHcC--CccEEEEEeCCC
Confidence 456899999875432 4455778999999999875 566777666655444443 245778899988
No 432
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=83.29 E-value=1.9 Score=34.97 Aligned_cols=92 Identities=14% Similarity=0.115 Sum_probs=54.1
Q ss_pred EEEEEcCCChhhhhh-----hhH-hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCccc
Q psy13390 115 KLQIWDTAGQEAFRS-----ITR-SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREV 188 (245)
Q Consensus 115 ~~~l~Dt~G~~~~~~-----~~~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~ 188 (245)
.+.++||+|...... +.. ...-..|-.++++|+... +++...+..+.... ++ -+++.||.|....
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~~--~i-t~iilTKlD~~a~--- 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---NAIVEQARQFNEAV--KI-DGIILTKLDADAR--- 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHS--CC-CEEEEECGGGCSC---
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHhc--CC-CEEEEeCcCCccc---
Confidence 356799999744322 111 012247889999998654 23333334443322 22 2677899996321
Q ss_pred CHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q psy13390 189 KKEEGEVFAREHGLVFMETSAKLATNVEEA 218 (245)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 218 (245)
.-.........+.|+.+++ +|++++++
T Consensus 284 -~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 284 -GGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp -CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred -hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 2334556667789988887 78887654
No 433
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=83.23 E-value=0.41 Score=35.03 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=13.3
Q ss_pred CeEEEEeecCCCccCC
Q psy13390 1 MVIMLIGNKSDLDARR 16 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~ 16 (245)
+|+++|+||+|+...+
T Consensus 135 ~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 135 IPVIVIATKADKIPKG 150 (195)
T ss_dssp CCEEEEEECGGGSCGG
T ss_pred CCEEEEEECcccCChH
Confidence 5899999999987544
No 434
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=83.20 E-value=14 Score=28.39 Aligned_cols=87 Identities=13% Similarity=0.121 Sum_probs=52.0
Q ss_pred EEEEEEcCCChhhhhhhh-HhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeE-EEEEeCCCCccCcccCH
Q psy13390 114 IKLQIWDTAGQEAFRSIT-RSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNMVI-MLIGNKSDLDARREVKK 190 (245)
Q Consensus 114 ~~~~l~Dt~G~~~~~~~~-~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi-ivv~nK~Dl~~~~~~~~ 190 (245)
+.+.|+||+|......+. ......+|.++++...+ ..++..+...+..+..... .+.++ -+|.|+.+.. ...
T Consensus 116 yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~ 190 (269)
T 1cp2_A 116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA----NEY 190 (269)
T ss_dssp CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS----CCH
T ss_pred CCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc----hhH
Confidence 558999998854322221 22235799999999864 5667776666666655432 24554 5789998732 123
Q ss_pred HHHHHHHHHcCCcEE
Q psy13390 191 EEGEVFAREHGLVFM 205 (245)
Q Consensus 191 ~~~~~~~~~~~~~~~ 205 (245)
+....+....+.+++
T Consensus 191 ~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 191 ELLDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCccc
Confidence 344445555565543
No 435
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=81.79 E-value=2.4 Score=37.02 Aligned_cols=26 Identities=15% Similarity=-0.193 Sum_probs=22.5
Q ss_pred cEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 33 VFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 33 ~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
+.+..||+.+.||+.+++.+++.+..
T Consensus 270 PV~~gSA~~~~Gv~~LLd~iv~~~Ps 295 (548)
T 3vqt_A 270 PVFFGSAINNFGVREMLDMFVEFAPG 295 (548)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred eeeecccccCcCHHHHHHHHHHhCCC
Confidence 57788999999999999999887753
No 436
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=81.67 E-value=1.3 Score=36.55 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=30.9
Q ss_pred CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccC
Q psy13390 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKL 41 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 41 (245)
.|+++|+||.|..-......+....++...+..++.+||+.
T Consensus 200 KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 200 KPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp SCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred CcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 38999999999643223335666778888899999999974
No 437
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=79.22 E-value=7.8 Score=30.73 Aligned_cols=94 Identities=21% Similarity=0.138 Sum_probs=49.2
Q ss_pred EEEEEEEcCCChhhh-----hhhhH-hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCc
Q psy13390 113 QIKLQIWDTAGQEAF-----RSITR-SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARR 186 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~-----~~~~~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 186 (245)
.+.+.|+||||.... ..+.. ...-.++.+++|+|+... ++.......+.... ...-+|.||.|....
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~---~~~~~~~~~~~~~~---~i~givlnk~d~~~~- 252 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEKV---GVTGLVLTKLDGDAR- 252 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---HHHHHHHHHHHHHT---CCCEEEEECGGGCSS-
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc---HHHHHHHHHHhhcC---CCCEEEEECCCCCcc-
Confidence 346899999976322 11111 112258889999998632 22222222232221 123478899996432
Q ss_pred ccCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q psy13390 187 EVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218 (245)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 218 (245)
...........+.|+.+++ +|++++++
T Consensus 253 ---~g~~~~~~~~~~~pi~~i~--~g~~~~dl 279 (295)
T 1ls1_A 253 ---GGAALSARHVTGKPIYFAG--VSEKPEGL 279 (295)
T ss_dssp ---CHHHHHHHHHHCCCEEEEC--------CC
T ss_pred ---HHHHHHHHHHHCcCEEEEe--CCCCcccc
Confidence 2345556677899988775 45566543
No 438
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=79.09 E-value=0.37 Score=35.85 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=12.7
Q ss_pred CeEEEEeecCCCccC
Q psy13390 1 MVIMLIGNKSDLDAR 15 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~ 15 (245)
+|+++||||+|+...
T Consensus 135 ~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 135 TPIILVGTKLDLRDD 149 (204)
T ss_dssp CCEEEEEECHHHHTC
T ss_pred CCEEEEEechhhccc
Confidence 589999999998654
No 439
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=77.95 E-value=9.7 Score=32.08 Aligned_cols=84 Identities=17% Similarity=0.086 Sum_probs=46.8
Q ss_pred EEEEEEEcCCChhhhhh-----hhH-hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCccC
Q psy13390 113 QIKLQIWDTAGQEAFRS-----ITR-SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV-IMLIGNKSDLDAR 185 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~-----~~~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~ 185 (245)
.+.+.|+||||...... +.. ..+..++.+++|+|+..... .......+.. ..+ .-+|.||.|....
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~----~l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNE----ALPLTGVVLTKVDGDAR 255 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHH----HSCCCCEEEECTTSSSC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhc----cCCCeEEEEecCCCCcc
Confidence 35689999999654321 111 23557899999999975432 2222222322 133 2468999996422
Q ss_pred cccCHHHHHHHHHHcCCcEEEe
Q psy13390 186 REVKKEEGEVFAREHGLVFMET 207 (245)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~ 207 (245)
. .....+....+.|+.++
T Consensus 256 ~----g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 256 G----GAALSIRHITGKPIKFL 273 (433)
T ss_dssp C----THHHHHHHHHCCCEEEE
T ss_pred H----HHHHHHHHHHCCCeEEE
Confidence 1 22334455556664443
No 440
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=77.40 E-value=7.8 Score=30.40 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=42.4
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHh---hcCCCCeE-EEEEeCCCCc
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ---HSNSNMVI-MLIGNKSDLD 183 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~pi-ivv~nK~Dl~ 183 (245)
.+.+.|+||++.... .....+..+|.+++++..+ ..++..+...+..+.. ....+.++ -+|.|+.|..
T Consensus 154 ~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 154 DYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAE-EESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGG-GCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCc-HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 356899999876432 2233445699999999875 3455555544444432 22345674 4889999853
No 441
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=76.96 E-value=20 Score=27.84 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=50.3
Q ss_pred EEEEEEEcCCChhhhhhh-hHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeE-EEEEeCCCCccCcccC
Q psy13390 113 QIKLQIWDTAGQEAFRSI-TRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNMVI-MLIGNKSDLDARREVK 189 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi-ivv~nK~Dl~~~~~~~ 189 (245)
.+.+.|+||+|......+ .......+|.++++...+ ..++..+...+..+..... .+.++ -+|.|+.+... .
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~----~ 192 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR----E 192 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT----H
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCchh----H
Confidence 356899999885432222 122336799999999864 5566666665555554321 24553 57889986321 1
Q ss_pred HHHHHHHHHHcCCcEE
Q psy13390 190 KEEGEVFAREHGLVFM 205 (245)
Q Consensus 190 ~~~~~~~~~~~~~~~~ 205 (245)
.+....+....+.+++
T Consensus 193 ~~~~~~l~~~~g~~~l 208 (289)
T 2afh_E 193 DELIIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHcCcccc
Confidence 2333444445565543
No 442
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=78.30 E-value=0.51 Score=34.93 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=12.6
Q ss_pred CeEEEEeecCCCccC
Q psy13390 1 MVIMLIGNKSDLDAR 15 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~ 15 (245)
+|+++|+||+|+.+.
T Consensus 135 ~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 135 TPIILVGTKLDLRDD 149 (204)
Confidence 489999999998654
No 443
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=75.11 E-value=2.4 Score=33.03 Aligned_cols=21 Identities=5% Similarity=0.096 Sum_probs=15.6
Q ss_pred eEEEEeecCCCccCCCCCHHH
Q psy13390 2 VIMLIGNKSDLDARREVKKEE 22 (245)
Q Consensus 2 ~~~lvgnK~Dl~~~~~v~~~~ 22 (245)
|+++|+||+|+...+..+.++
T Consensus 156 ~iivV~nK~Dl~~~~~~~~~~ 176 (270)
T 1h65_A 156 KAIVALTHAQFSPPDGLPYDE 176 (270)
T ss_dssp GEEEEEECCSCCCGGGCCHHH
T ss_pred CEEEEEECcccCCcCCCCHHH
Confidence 799999999987655444443
No 444
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=73.16 E-value=5.9 Score=30.98 Aligned_cols=66 Identities=11% Similarity=0.119 Sum_probs=42.2
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEeCCCCc
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIM-LIGNKSDLD 183 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~ 183 (245)
.+.+.|+||++...... .......+|.+++|+.... .+...+...++.+... +.+++ +|.|+.|..
T Consensus 191 ~yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~~---~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEAT---GAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHTT---TCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHhC---CCCEEEEEEeCCcCC
Confidence 35689999987643211 1234457899999998763 3555555555555443 35665 889999863
No 445
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=71.89 E-value=3.2 Score=32.18 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=15.7
Q ss_pred eEEEEeecCCCccCCCCCHHH
Q psy13390 2 VIMLIGNKSDLDARREVKKEE 22 (245)
Q Consensus 2 ~~~lvgnK~Dl~~~~~v~~~~ 22 (245)
|+++|+||+|+...+....++
T Consensus 153 ~~ivv~nK~Dl~~~~~~~~e~ 173 (262)
T 3def_A 153 KTLLVLTHAQFSPPDELSYET 173 (262)
T ss_dssp GEEEEEECTTCCCSTTCCHHH
T ss_pred CEEEEEeCcccCCCCCccHHH
Confidence 789999999996555555543
No 446
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=71.35 E-value=24 Score=28.26 Aligned_cols=93 Identities=19% Similarity=0.187 Sum_probs=53.1
Q ss_pred EEEEEEEcCCChhhhhh-----hhH--hhc-----cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeC
Q psy13390 113 QIKLQIWDTAGQEAFRS-----ITR--SYY-----RGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV-IMLIGNK 179 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~-----~~~--~~~-----~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK 179 (245)
.+.+.|+||||...... +.. ..+ ..+|.+++|+|++.. .+.+.. +.... ...+ .-+|.||
T Consensus 191 ~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~----~~~~~-~~~~i~GvVltk 263 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQ----AEEFS-KVADVSGIILTK 263 (320)
T ss_dssp TCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHH----HHHHT-TTSCCCEEEEEC
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHH----HHHHh-hcCCCcEEEEeC
Confidence 35689999999755321 110 111 247899999998742 223222 22222 1222 3478899
Q ss_pred CCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q psy13390 180 SDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218 (245)
Q Consensus 180 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 218 (245)
.|..... .....+....+.|+.++. .|++++++
T Consensus 264 ~d~~~~~----g~~~~~~~~~~~Pi~~i~--~Ge~~~dl 296 (320)
T 1zu4_A 264 MDSTSKG----GIGLAIKELLNIPIKMIG--VGEKVDDL 296 (320)
T ss_dssp GGGCSCT----THHHHHHHHHCCCEEEEE--CSSSTTCE
T ss_pred CCCCCch----hHHHHHHHHHCcCEEEEe--CCCCcccc
Confidence 9964221 244556667789977664 56666654
No 447
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=70.13 E-value=16 Score=30.12 Aligned_cols=51 Identities=20% Similarity=0.036 Sum_probs=35.4
Q ss_pred CCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390 169 SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 169 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i 226 (245)
...|++++.||+|.. ..++...+. ..-.++.+|+..+.|++++...+-+.+
T Consensus 248 ~~~p~i~v~nKid~~-----~~eele~l~--~~~~~~~is~~~e~gLd~Li~~~y~~L 298 (376)
T 4a9a_A 248 RYMPAIYVLNKIDSL-----SIEELELLY--RIPNAVPISSGQDWNLDELLQVMWDRL 298 (376)
T ss_dssp EEECEEEEEECGGGS-----CHHHHHHHT--TSTTEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hccceEEEEeccccc-----CHHHHHHHh--cccchhhhhhhhcccchhHHHHHHHHc
Confidence 457999999999964 233333322 122478899999999998877666554
No 448
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=69.60 E-value=3.6 Score=36.61 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=22.3
Q ss_pred CcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390 32 LVFMETSAKLATNVEEAFIDTAKEIYE 58 (245)
Q Consensus 32 ~~~~~~Sa~~~~~i~~~f~~l~~~~~~ 58 (245)
.+.+..||+++.||+.+++.++..+..
T Consensus 213 ~Pv~~gSa~~~~Gv~~LLd~i~~~~p~ 239 (638)
T 3j25_A 213 FPLYHGSAKSNIGIDNLIEVITNKFYS 239 (638)
T ss_dssp CCCCCCCSTTCCSHHHHHHHHHHSCCC
T ss_pred ccccccccccCCCchhHhhhhhccccC
Confidence 467779999999999999988876643
No 449
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=68.70 E-value=9.7 Score=32.77 Aligned_cols=93 Identities=16% Similarity=0.141 Sum_probs=51.2
Q ss_pred EEEEEEcCCChhhhhh-----hhH--hhc-----cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q psy13390 114 IKLQIWDTAGQEAFRS-----ITR--SYY-----RGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSD 181 (245)
Q Consensus 114 ~~~~l~Dt~G~~~~~~-----~~~--~~~-----~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D 181 (245)
+.+.|+||+|...... +.. ... ...+-++||+|++.+. +....+..+.... ++. .+|.||.|
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq---~al~~ak~f~~~~--~it-gvIlTKLD 449 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ---NAVSQAKLFHEAV--GLT-GITLTKLD 449 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH---HHHHHHHHHHHHT--CCS-EEEEECGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH---HHHHHHHHHHhhc--CCC-EEEEEcCC
Confidence 3477899999743221 111 111 1356889999987542 2222233333322 233 46789999
Q ss_pred CccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q psy13390 182 LDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218 (245)
Q Consensus 182 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 218 (245)
-... .-....+....+.|+.++ -+|++++++
T Consensus 450 ~tak----gG~~lsi~~~~~~PI~fi--g~Ge~vdDL 480 (503)
T 2yhs_A 450 GTAK----GGVIFSVADQFGIPIRYI--GVGERIEDL 480 (503)
T ss_dssp GCSC----CTHHHHHHHHHCCCEEEE--ECSSSGGGE
T ss_pred Cccc----ccHHHHHHHHHCCCEEEE--ecCCChhhc
Confidence 5321 223455566678887775 457777654
No 450
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=67.65 E-value=21 Score=28.39 Aligned_cols=91 Identities=14% Similarity=0.068 Sum_probs=50.7
Q ss_pred EEEEEcCCChhhhhh-----h-------hHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q psy13390 115 KLQIWDTAGQEAFRS-----I-------TRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDL 182 (245)
Q Consensus 115 ~~~l~Dt~G~~~~~~-----~-------~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 182 (245)
.+.+.||+|...... + .+......+.+++++|++..... ...+..+.... +. -+++.||.|.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~---~~~~~~~~~~~--~~-t~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG---LEQAKKFHEAV--GL-TGVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH---HHHHHHHHHHH--CC-SEEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH---HHHHHHHHHHc--CC-cEEEEECCcc
Confidence 356889999643211 1 11223467889999998765332 22233333322 23 3677899986
Q ss_pred ccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q psy13390 183 DARREVKKEEGEVFAREHGLVFMETSAKLATNVEE 217 (245)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 217 (245)
.... -.........+.|+.+++ +|+++++
T Consensus 260 ~a~g----g~~l~i~~~~~~pi~~ig--~Ge~~~d 288 (304)
T 1rj9_A 260 TAKG----GVLIPIVRTLKVPIKFVG--VGEGPDD 288 (304)
T ss_dssp SCCC----TTHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred cccc----cHHHHHHHHHCCCeEEEe--CCCChhh
Confidence 4221 123345566788877775 4555554
No 451
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=67.49 E-value=23 Score=28.24 Aligned_cols=93 Identities=24% Similarity=0.197 Sum_probs=51.9
Q ss_pred EEEEEEcCCChhhhhh-----hh--Hhhc-----cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q psy13390 114 IKLQIWDTAGQEAFRS-----IT--RSYY-----RGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSD 181 (245)
Q Consensus 114 ~~~~l~Dt~G~~~~~~-----~~--~~~~-----~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D 181 (245)
+.+.+.||+|...... +. ...+ ..++.+++|+|++.. .+.+.. ...+.... ++. -+|.||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~~--~i~-gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV--NVT-GIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS--CCC-EEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhcC--CCC-EEEEeCCC
Confidence 3588999999632221 11 1112 247899999998733 222222 22233222 222 45679999
Q ss_pred CccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q psy13390 182 LDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218 (245)
Q Consensus 182 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 218 (245)
.... .-.+.......+.|+.+++. |+.++++
T Consensus 261 ~~~~----gG~~l~~~~~~~~Pi~~i~~--Ge~~~dl 291 (306)
T 1vma_A 261 GTAK----GGITLAIARELGIPIKFIGV--GEKAEDL 291 (306)
T ss_dssp GCSC----TTHHHHHHHHHCCCEEEEEC--SSSGGGE
T ss_pred Cccc----hHHHHHHHHHHCCCEEEEeC--CCChhhc
Confidence 6422 22356677778999887754 5556543
No 452
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=67.28 E-value=2.7 Score=33.09 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=42.7
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHH---H-------------H---HHHHhh-cCCC-C
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT---W-------------L---EDARQH-SNSN-M 171 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~---~-------------~---~~~~~~-~~~~-~ 171 (245)
.+.+.|+|+++.. .......+..+|.+|++...+. .++..+.. + + ..+... ...+ .
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 179 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF-VDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAM 179 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH-HHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCC
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc-cHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCccc
Confidence 3568999998864 4445667889999999998753 23322111 1 2 222222 0245 6
Q ss_pred eEEEEEeCCCCc
Q psy13390 172 VIMLIGNKSDLD 183 (245)
Q Consensus 172 piivv~nK~Dl~ 183 (245)
++.+|.|+.+..
T Consensus 180 ~~~vV~N~~~~~ 191 (286)
T 2xj4_A 180 DWVVLRNRLATT 191 (286)
T ss_dssp EEEEEEECCTTC
T ss_pred cEEEEEeeecCC
Confidence 788999999853
No 453
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=64.91 E-value=9 Score=32.55 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=40.3
Q ss_pred EEEEcCCChhh--hhhhh--------HhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q psy13390 116 LQIWDTAGQEA--FRSIT--------RSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSD 181 (245)
Q Consensus 116 ~~l~Dt~G~~~--~~~~~--------~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D 181 (245)
..+||..|.+. .+..+ ..++..+++.++|+|.++. +.+....|+..+.... .+++.+-..++
T Consensus 89 ~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~---~~vv~l~~~~~ 160 (469)
T 1bif_A 89 FEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQNG---YKTFFVESICV 160 (469)
T ss_dssp GGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHT---CEEEEEEECCC
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcC---CcEEEEEEECC
Confidence 46899999843 33333 5677778899999999987 5555566766665543 45555543333
No 454
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=64.02 E-value=7.6 Score=30.36 Aligned_cols=67 Identities=12% Similarity=0.043 Sum_probs=36.4
Q ss_pred ccCCcEEEEEEeCC-ChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCH--HHHHHHHHHcCCcEEE
Q psy13390 135 YRGAAGALLVYDIT-RRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKK--EEGEVFAREHGLVFME 206 (245)
Q Consensus 135 ~~~~d~vi~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~ 206 (245)
+..++++++++|.. .+-+-.+ ...+..+. .. +++++|.+|+|.....+... ..........++.+|.
T Consensus 109 iaRal~~lllldep~~gL~~lD-~~~l~~L~---~~-~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 109 DTRVHCCLYFISPTGHSLRPLD-LEFMKHLS---KV-VNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp CCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---TT-SEEEEEETTGGGSCHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred hheeeeeeEEEecCCCcCCHHH-HHHHHHHH---hc-CcEEEEEeccccCCHHHHHHHHHHHHHHHHHcCccccC
Confidence 34579999999965 3222222 22233332 23 89999999999754322111 1222233445666553
No 455
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=63.41 E-value=27 Score=27.36 Aligned_cols=67 Identities=21% Similarity=0.046 Sum_probs=43.0
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD 183 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 183 (245)
.+.+.|+||+...... ......+.+|.+++|+.... .+...+...++.+.... -..+-+|.|+.|..
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~g--~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQNG--IPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHTT--CCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhCC--CCEEEEEEcCcccc
Confidence 3458999998764322 12335667999999999764 34555555555555543 12345788999864
No 456
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=61.29 E-value=14 Score=32.55 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=35.8
Q ss_pred EEEEEcCCChh-------------hhhhhhHhhccCC-cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q psy13390 115 KLQIWDTAGQE-------------AFRSITRSYYRGA-AGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKS 180 (245)
Q Consensus 115 ~~~l~Dt~G~~-------------~~~~~~~~~~~~~-d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~ 180 (245)
.+.+.|.||.. ....+...++... .+++++.+.+....-+....+...+ ...+.+.|+|.||+
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v---~~~g~rtI~VlTK~ 224 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV---DPEGDRTIGILTKP 224 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH---CSSCCSEEEEEECG
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH---hhcCCceEEEecch
Confidence 48899988632 2233445555554 4455555543222222223333333 33457899999999
Q ss_pred CCc
Q psy13390 181 DLD 183 (245)
Q Consensus 181 Dl~ 183 (245)
|+.
T Consensus 225 Dlv 227 (608)
T 3szr_A 225 DLV 227 (608)
T ss_dssp GGS
T ss_pred hhc
Confidence 985
No 457
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=57.26 E-value=23 Score=28.04 Aligned_cols=90 Identities=16% Similarity=0.066 Sum_probs=51.2
Q ss_pred EEEEEEcCCChhhhhh--hhH--hhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcc
Q psy13390 114 IKLQIWDTAGQEAFRS--ITR--SYYR--GAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARRE 187 (245)
Q Consensus 114 ~~~~l~Dt~G~~~~~~--~~~--~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~ 187 (245)
..+.|+||+|...... +.. ..+. ..+.+++|+|++.. .+.+..+...+.. -+. .-+|.||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~~-~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VPV-NQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SCC-CEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CCC-CEEEEeCCCcccc--
Confidence 4689999999765432 111 2232 46788999988743 3344443332221 112 2356699997432
Q ss_pred cCHHHHHHHHHHcCCcEEEeccCCCCCH
Q psy13390 188 VKKEEGEVFAREHGLVFMETSAKLATNV 215 (245)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 215 (245)
...........+.|+.+++ +|+++
T Consensus 255 --~g~~~~~~~~~~~pi~~i~--~ge~v 278 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT--NGQNV 278 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC--CSSCT
T ss_pred --hhHHHHHHHHHCcCEEEEE--CCCCC
Confidence 2345556667788876654 45554
No 458
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=56.42 E-value=19 Score=28.42 Aligned_cols=66 Identities=21% Similarity=0.086 Sum_probs=40.5
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEeCCCCc
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVI-MLIGNKSDLD 183 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ivv~nK~Dl~ 183 (245)
.+.+.|+||++...... .......+|.+++|..... .+...+...++.+.... .++ -+|.|+.|..
T Consensus 213 ~yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~-~~~~~~~~~~~~l~~~~---~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGL-NTAKEVSLSMQRLEQAG---VNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTT-SCTTHHHHHHHHHHHTT---CCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCC-ChHHHHHHHHHHHHhCC---CCeEEEEEeCCccC
Confidence 35689999998643221 2234567999999998753 24444555555554432 333 3678999864
No 459
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=50.87 E-value=38 Score=27.84 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=37.3
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhH-------HHHHHHHHHHHhhc-CCCC-eEEEEEeCCC
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-------NHLTTWLEDARQHS-NSNM-VIMLIGNKSD 181 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~-------~~~~~~~~~~~~~~-~~~~-piivv~nK~D 181 (245)
.+.+.|+|++..-. ......+..+|.+|++...+. .++ ..+...+..+.... ...+ .++.+.|+.+
T Consensus 247 ~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~-~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~ 321 (403)
T 3ez9_A 247 DYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQ-VDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMT 321 (403)
T ss_dssp GCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSH-HHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC--
T ss_pred cCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCch-hhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccC
Confidence 45689999986542 334456678999999998753 222 22333344444332 1122 2466788887
No 460
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=49.83 E-value=73 Score=23.27 Aligned_cols=87 Identities=10% Similarity=0.035 Sum_probs=46.7
Q ss_pred EEEEEEcCCChhhhh----hhhHhhccCC-cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEeCCCCccCcc
Q psy13390 114 IKLQIWDTAGQEAFR----SITRSYYRGA-AGALLVYDITRRETFNHLTTWLEDARQHSNSNMVI-MLIGNKSDLDARRE 187 (245)
Q Consensus 114 ~~~~l~Dt~G~~~~~----~~~~~~~~~~-d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ivv~nK~Dl~~~~~ 187 (245)
+.+.++|++|.-... .......... +.+++|.... ..+..++...++.+.. .+.++ -+|.|+.|.. ..
T Consensus 109 yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~-~~~~~~~~~~i~~l~~---~~~~i~gvvlN~~~~~--~~ 182 (224)
T 1byi_A 109 ADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVK-LGCINHAMLTAQVIQH---AGLTLAGWVANDVTPP--GK 182 (224)
T ss_dssp CSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECS-TTHHHHHHHHHHHHHH---TTCCEEEEEEECCSSC--CT
T ss_pred CCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCC-CCcHHHHHHHHHHHHH---CCCcEEEEEEeCCCCc--hh
Confidence 458999998653210 0111122222 2477777764 3456666665555542 34554 4789999853 12
Q ss_pred cCHHHHHHHHHHcCCcEEE
Q psy13390 188 VKKEEGEVFAREHGLVFME 206 (245)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~ 206 (245)
...+....+....+.+++.
T Consensus 183 ~~~~~~~~l~~~~~~~vl~ 201 (224)
T 1byi_A 183 RHAEYMTTLTRMIPAPLLG 201 (224)
T ss_dssp THHHHHHHHHHHSSSCEEE
T ss_pred hHHHHHHHHHHHcCCCEEE
Confidence 2233344455556777553
No 461
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=41.32 E-value=29 Score=27.84 Aligned_cols=50 Identities=12% Similarity=0.046 Sum_probs=36.5
Q ss_pred CCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q psy13390 169 SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 225 (245)
Q Consensus 169 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 225 (245)
...|+||+ +|-|.. .++..+.++..++|++.++..+...+..+..++...
T Consensus 79 ~~~P~IIl-trg~~~------peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~ 128 (314)
T 1ko7_A 79 PETPAIIV-TRDLEP------PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHE 128 (314)
T ss_dssp TTCCCEEE-CTTCCC------CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEE-eCCCCC------CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHh
Confidence 45787554 666653 345677788889999999998888888777776554
No 462
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=38.41 E-value=56 Score=29.35 Aligned_cols=27 Identities=7% Similarity=-0.173 Sum_probs=22.1
Q ss_pred cEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390 33 VFMETSAKLATNVEEAFIDTAKEIYEK 59 (245)
Q Consensus 33 ~~~~~Sa~~~~~i~~~f~~l~~~~~~~ 59 (245)
+.+..||..+.|+..+++.+++.+...
T Consensus 266 pv~~gsa~~~~gv~~lLd~i~~~lPsP 292 (709)
T 4fn5_A 266 PAVCGSSFKNKGVPLVLDAVIDYLPAP 292 (709)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHSCCT
T ss_pred eeeeeecccCCchHHHHHHHHhhCCCC
Confidence 567789999999999998888877543
No 463
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=37.76 E-value=47 Score=27.47 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=28.4
Q ss_pred eEEEEeecCCCcc--CCCCCHHHHHHHHHHhC--CcEEEecccC
Q psy13390 2 VIMLIGNKSDLDA--RREVKKEEGEVFAREHG--LVFMETSAKL 41 (245)
Q Consensus 2 ~~~lvgnK~Dl~~--~~~v~~~~~~~~~~~~~--~~~~~~Sa~~ 41 (245)
|++.++|+.|-.- ...--.+....|+...+ ..++.+||+.
T Consensus 226 p~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~ 269 (392)
T 1ni3_A 226 PVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF 269 (392)
T ss_dssp CEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred ceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence 8999999998321 11223566777887766 7899999975
No 464
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=35.93 E-value=72 Score=27.35 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEec--cCCCCCHHHHHHHHHHHH
Q psy13390 156 LTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETS--AKLATNVEEAFIDTAKEI 226 (245)
Q Consensus 156 ~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~~~~~i~~~i 226 (245)
+.+-++.+.++ ++|++|..|+..-..+. ..+..++++...++....+. ++-|.|-.++-+.+++.+
T Consensus 349 L~kHIen~~~f---GvpvVVaiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~s~~wa~GG~G~~~LA~~Vv~~~ 416 (543)
T 3do6_A 349 LRVHVENLRKF---NLPVVVALNRFSTDTEK--EIAYVVKECEKLGVRVAVSEVFKKGSEGGVELAKAVAEAA 416 (543)
T ss_dssp HHHHHHHHHHT---TCCEEEEEECCTTCCHH--HHHHHHHHHHTTTCEEEEECHHHHGGGGSHHHHHHHHHHC
T ss_pred HHHHHHHHHHc---CCCeEEEEeCCCCCCHH--HHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHh
Confidence 33444445443 59999999998753222 22456778888998764433 677888888877776655
No 465
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=34.80 E-value=1.2e+02 Score=21.54 Aligned_cols=47 Identities=6% Similarity=-0.055 Sum_probs=32.1
Q ss_pred hccCCcEEEEEEeCCChhhHHHHHHHHHHHHh---hcCCCCeEEEEEeCC
Q psy13390 134 YYRGAAGALLVYDITRRETFNHLTTWLEDARQ---HSNSNMVIMLIGNKS 180 (245)
Q Consensus 134 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~piivv~nK~ 180 (245)
.+..+|++||........--..+..|+..+.. ..-.++|+.++++--
T Consensus 49 ~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g 98 (188)
T 2ark_A 49 DVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSG 98 (188)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEES
T ss_pred HHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECC
Confidence 45679999999988765444556667776644 122568888888843
No 466
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=32.74 E-value=99 Score=22.37 Aligned_cols=63 Identities=14% Similarity=0.245 Sum_probs=35.6
Q ss_pred EEEEcCCCh-hhhhhhhHhh-ccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEE-EeCCCC
Q psy13390 116 LQIWDTAGQ-EAFRSITRSY-YRGAAGALLVYDITRRE-TFNHLTTWLEDARQHSNSNMVIMLI-GNKSDL 182 (245)
Q Consensus 116 ~~l~Dt~G~-~~~~~~~~~~-~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv-~nK~Dl 182 (245)
+.+-|+=+. ..+..+.... -.++|.++++-|..+.. ..+....+++.+... +.|+++| ||. |.
T Consensus 9 ~~iSD~H~~~~~~~~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~---~~pv~~v~GNH-D~ 75 (228)
T 1uf3_A 9 LATSNPMGDLEALEKFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEA---HLPTAYVPGPQ-DA 75 (228)
T ss_dssp EEEECCTTCHHHHHHHHTHHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGGG---CSCEEEECCTT-SC
T ss_pred EEEeeccCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhc---CCcEEEECCCC-Cc
Confidence 456677443 2233332211 12799999999998754 444444555555433 3677665 666 53
No 467
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=30.90 E-value=1.4e+02 Score=22.20 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=22.5
Q ss_pred EEEEcCCCh-hhhhhhhHhh-ccCCcEEEEEEeCCChhh
Q psy13390 116 LQIWDTAGQ-EAFRSITRSY-YRGAAGALLVYDITRRET 152 (245)
Q Consensus 116 ~~l~Dt~G~-~~~~~~~~~~-~~~~d~vi~v~d~~~~~s 152 (245)
+.+-|+=+. +.+..+.... -.++|.++++-|..+...
T Consensus 9 ~~iSDlH~~~~~~~~~l~~~~~~~~D~vi~~GDl~~~~~ 47 (260)
T 2yvt_A 9 LAIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEA 47 (260)
T ss_dssp EEEECCTTCGGGHHHHHHHHHHHCCSEEEEESCCCCCHH
T ss_pred EEEeecCCChHHHHHHHHHHHhcCCCEEEECCCCCCccC
Confidence 456677443 3333333222 258999999999987543
No 468
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=30.07 E-value=52 Score=24.03 Aligned_cols=72 Identities=10% Similarity=0.077 Sum_probs=41.0
Q ss_pred hHhhccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCc
Q psy13390 131 TRSYYRGAAGALLVYDITRR---ETFNHLTTWLEDARQHS-NSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLV 203 (245)
Q Consensus 131 ~~~~~~~~d~vi~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 203 (245)
+...+..||++|++.--.+. ..+.....|+....... -.++|+.+++.=.=.... .......+......+..
T Consensus 61 l~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg-~~a~~~Lr~vl~~lg~~ 136 (190)
T 3u7r_A 61 LKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGA-ALAQARLKNDLLHVGTV 136 (190)
T ss_dssp HHHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTT-HHHHHHHHHHHHTTTCE
T ss_pred HHHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhH-HHHHHHHHHHHHHcCCE
Confidence 34578899999999877664 45666666664311111 157899888764322111 11234445555555543
No 469
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=29.56 E-value=2.3e+02 Score=23.00 Aligned_cols=90 Identities=20% Similarity=0.131 Sum_probs=48.7
Q ss_pred EEEEcCCChhhhhh-----h-------hHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390 116 LQIWDTAGQEAFRS-----I-------TRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD 183 (245)
Q Consensus 116 ~~l~Dt~G~~~~~~-----~-------~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 183 (245)
..+.||+|...... + .+......+-+++++|++... +.. .....+.... +.. +++.+|.|..
T Consensus 243 ~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttgl--D~~-~~~~~~~~~~--g~t-~iiiThlD~~ 316 (359)
T 2og2_A 243 VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGL--NML-PQAREFNEVV--GIT-GLILTKLDGS 316 (359)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGG--GGH-HHHHHHHHHT--CCC-EEEEESCTTC
T ss_pred HHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCC--CHH-HHHHHHHHhc--CCe-EEEEecCccc
Confidence 56889999744321 1 112335678889999976432 111 1122333221 234 5678998853
Q ss_pred cCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q psy13390 184 ARREVKKEEGEVFAREHGLVFMETSAKLATNVEE 217 (245)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 217 (245)
. ..-.........+.|+.++. +|+.+++
T Consensus 317 ~----~gG~~lsi~~~~~~pI~~ig--~Ge~~~D 344 (359)
T 2og2_A 317 A----RGGCVVSVVEELGIPVKFIG--VGEAVED 344 (359)
T ss_dssp S----CTHHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred c----cccHHHHHHHHhCCCEEEEe--CCCChHh
Confidence 2 12334455666788877764 3455554
No 470
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=28.58 E-value=85 Score=22.96 Aligned_cols=59 Identities=7% Similarity=0.105 Sum_probs=34.3
Q ss_pred EcCCC-hhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCC
Q psy13390 119 WDTAG-QEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSNMVIMLIGNKSD 181 (245)
Q Consensus 119 ~Dt~G-~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D 181 (245)
.|++. ........+..++++..+|+++.-.-..+ .-..| ++.... ..++|||+|-...+
T Consensus 60 rDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s--~~v~w--EIe~Ai~~~~~PII~Vy~~~~ 120 (189)
T 3hyn_A 60 RDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANS--RALRE--EMNYGIGTKGLPVIVIYPDYD 120 (189)
T ss_dssp TSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCC--HHHHH--HHHHHTTTTCCCEEEEETTCC
T ss_pred cccccHHHHHHHHHHHHHHhcCcEEEEEecCcccc--chhHH--HHHHHHHhcCCcEEEEECCcc
Confidence 34444 23334445567889998888886554333 12233 344444 46899998865543
No 471
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=28.53 E-value=1e+02 Score=25.67 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=34.3
Q ss_pred CeEEEEeecCCCc-------cCCCCCHHHH----HHHH----HHhC---CcEEEecc--cCCCcHHHHHHHHHHHH
Q psy13390 1 MVIMLIGNKSDLD-------ARREVKKEEG----EVFA----REHG---LVFMETSA--KLATNVEEAFIDTAKEI 56 (245)
Q Consensus 1 ~~~~lvgnK~Dl~-------~~~~v~~~~~----~~~~----~~~~---~~~~~~Sa--~~~~~i~~~f~~l~~~~ 56 (245)
.|+++|.||.|+. .-+....++. ..++ ...| ...+.+|+ ..+.|++++-+.+.+.+
T Consensus 176 ~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 176 KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred CCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 4889999999963 1112233332 2232 1222 24677899 66677998888887765
No 472
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=26.94 E-value=63 Score=26.24 Aligned_cols=48 Identities=13% Similarity=-0.073 Sum_probs=30.5
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHH
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA 163 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~ 163 (245)
.+.+.++||+... .......+..||.+++|...+ +.+...+...+..+
T Consensus 259 ~yD~VIID~p~~~--~~~~~~~l~~aD~vivv~~~~-~~s~~~l~~~~~~l 306 (373)
T 3fkq_A 259 NYDEIIVDLPFSL--EIEKLKLLSKAWRIIVVNDGS-QLSNYKFMRAYESV 306 (373)
T ss_dssp CCSEEEEECCCCC--CHHHHHHHTTCSEEEEEECCC-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCC--CHHHHHHHHHCCEEEEEecCC-chHHHHHHHHHHHH
Confidence 4678999998432 223445778899999998765 44534344433333
No 473
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=25.79 E-value=1.3e+02 Score=21.42 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=39.8
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh----cCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEE
Q psy13390 133 SYYRGAAGALLVYDITRRETFNHLTTWLEDARQH----SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFM 205 (245)
Q Consensus 133 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 205 (245)
..+..+|++||........--..+..|+..+... .-.++|+.++++---......-.......+....++.++
T Consensus 67 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~ 143 (200)
T 2a5l_A 67 EDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVL 143 (200)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 3567899999999887643223344455444321 125678887777543211111123345555556676543
No 474
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=25.78 E-value=1.1e+02 Score=21.88 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=40.4
Q ss_pred hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh----cCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEE
Q psy13390 134 YYRGAAGALLVYDITRRETFNHLTTWLEDARQH----SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFM 205 (245)
Q Consensus 134 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 205 (245)
.+..+|++||..-.....--..+..|+..+... .-.++|+.++++--...............+....++.++
T Consensus 67 ~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~ 142 (199)
T 2zki_A 67 DMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIV 142 (199)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEEC
T ss_pred HHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEe
Confidence 566799999999887643223444555544211 125678877776433211112233455556666776654
No 475
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=25.75 E-value=1.1e+02 Score=24.83 Aligned_cols=34 Identities=6% Similarity=-0.009 Sum_probs=24.7
Q ss_pred EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCC
Q psy13390 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDIT 148 (245)
Q Consensus 113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~ 148 (245)
.+.+.|+||+..-. ......+..+|.+|++...+
T Consensus 244 ~yD~ViiD~pp~~~--~~~~~~l~~aD~vliv~~p~ 277 (398)
T 3ez2_A 244 DYDFILVDSGPHLD--AFLKNALASANILFTPLPPA 277 (398)
T ss_dssp TCSEEEEEECSCCS--HHHHHHHHHCSEEEEEECCS
T ss_pred cCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEecCc
Confidence 35689999986542 23344666899999999875
No 476
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=25.29 E-value=72 Score=21.89 Aligned_cols=80 Identities=10% Similarity=0.081 Sum_probs=44.1
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q psy13390 137 GAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216 (245)
Q Consensus 137 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 216 (245)
.+..|++.=|++..+....+ ..+... .++|++.+.+|.+|- ........+..+.+-...+..+.
T Consensus 48 kakLViiA~D~~p~~~~~~l----~~lc~~--~~VP~~~v~sk~eLG----------~a~G~~~~~s~vaI~d~~~s~~~ 111 (134)
T 2ale_A 48 ISEFIIMAADCEPIEILLHL----PLLCED--KNVPYVFVPSRVALG----------RACGVSRPVIAASITTNDASAIK 111 (134)
T ss_dssp CEEEEEEETTCSSGGGGTHH----HHHHHH--HTCCEEEESCHHHHH----------HHTTCSSCCSEEEEECCTTCTTH
T ss_pred CCeEEEEeCCCCHHHHHHHH----HHHHHh--cCCCEEEECCHHHHH----------HHhCCCCCeEEEEEEcCChHHHH
Confidence 45555555565543233332 333333 369998887776652 11111223334445445667888
Q ss_pred HHHHHHHHHHHHHHhc
Q psy13390 217 EAFIDTAKEIYEKIQE 232 (245)
Q Consensus 217 ~~~~~i~~~i~~~~~~ 232 (245)
.+++.+...+.....+
T Consensus 112 ~l~~~i~~~~~~~~~~ 127 (134)
T 2ale_A 112 TQIYAVKDKIETLLIL 127 (134)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhHHH
Confidence 9888888887665543
No 477
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=24.99 E-value=38 Score=24.61 Aligned_cols=70 Identities=11% Similarity=0.075 Sum_probs=40.1
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHH-HHHHHHHHcCCcE
Q psy13390 133 SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKE-EGEVFAREHGLVF 204 (245)
Q Consensus 133 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~ 204 (245)
..+..+|++||+.-..+..--..+..|+..+....-.++|++++++ ..-.... ...+ ..+.+....|+.+
T Consensus 65 ~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~t-gg~~~~~-~a~~~~l~~~l~~~g~~~ 135 (197)
T 2vzf_A 65 DATCNADGLIVATPIYKASYTGLLKAFLDILPQFALAGKAALPLAT-GGSPAHV-LALDYGLRPVLHSMGVRH 135 (197)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHTTSCTTTTTTCEEEEEEE-ESSGGGG-GHHHHTHHHHHHTTTCSE
T ss_pred HHHHHCCEEEEEeCccCCCCCHHHHHHHHhccccccCCCEEEEEEE-CCCcchh-hHHHHHHHHHHHHcCCEe
Confidence 3577899999999887643223344454444322225789999988 3322211 1122 3555666677654
No 478
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=24.97 E-value=14 Score=32.11 Aligned_cols=15 Identities=27% Similarity=0.237 Sum_probs=12.2
Q ss_pred CeEEEEeecCCCccC
Q psy13390 1 MVIMLIGNKSDLDAR 15 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~~ 15 (245)
.|+++|+||+|+...
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 378999999998643
No 479
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=24.70 E-value=37 Score=31.31 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=15.6
Q ss_pred CeEEEEeecCCCcc-CCCCCHHH
Q psy13390 1 MVIMLIGNKSDLDA-RREVKKEE 22 (245)
Q Consensus 1 ~~~~lvgnK~Dl~~-~~~v~~~~ 22 (245)
+|+++|+||+|+.. +.+.+.++
T Consensus 151 ~p~ilviNK~D~~~~e~~~~~~e 173 (842)
T 1n0u_A 151 IKPVVVINKVDRALLELQVSKED 173 (842)
T ss_dssp CEEEEEEECHHHHHHTSCCCHHH
T ss_pred CCeEEEEECCCcchhhhccCHHH
Confidence 58999999999863 33445544
No 480
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=24.38 E-value=2.6e+02 Score=21.90 Aligned_cols=90 Identities=20% Similarity=0.132 Sum_probs=48.1
Q ss_pred EEEEcCCChhhhhh-----hh-------HhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390 116 LQIWDTAGQEAFRS-----IT-------RSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD 183 (245)
Q Consensus 116 ~~l~Dt~G~~~~~~-----~~-------~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 183 (245)
..+.||+|...+.. +. +......+-+++++|++..- +.. ..+..+.+. .+.. +++.+|.|..
T Consensus 186 ~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsgl--D~~-~~~~~~~~~--~g~t-~iiiThlD~~ 259 (302)
T 3b9q_A 186 VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGL--NML-PQAREFNEV--VGIT-GLILTKLDGS 259 (302)
T ss_dssp EEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGG--GGH-HHHHHHHHH--TCCC-EEEEECCSSC
T ss_pred chHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCc--CHH-HHHHHHHHh--cCCC-EEEEeCCCCC
Confidence 56889999744321 11 11234577789999976432 211 112233322 1344 5677998853
Q ss_pred cCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q psy13390 184 ARREVKKEEGEVFAREHGLVFMETSAKLATNVEE 217 (245)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 217 (245)
. ..-.....+...+.|+.++. +|+.+++
T Consensus 260 ~----~~g~~l~~~~~~~~pi~~i~--~Ge~~~d 287 (302)
T 3b9q_A 260 A----RGGCVVSVVEELGIPVKFIG--VGEAVED 287 (302)
T ss_dssp S----CTHHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred C----ccChheehHHHHCCCEEEEe--CCCChhh
Confidence 2 23444556667788877663 3444443
No 481
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=24.37 E-value=76 Score=23.11 Aligned_cols=71 Identities=7% Similarity=0.015 Sum_probs=40.7
Q ss_pred HhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCc
Q psy13390 132 RSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLV 203 (245)
Q Consensus 132 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 203 (245)
...+..||++||+.-..+..---.++.|+..+....-.++|+.++++- .-...........+.+....++.
T Consensus 80 ~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~~~l~gK~~~~v~t~-G~~~~~~~~~~~L~~il~~lg~~ 150 (191)
T 3k1y_A 80 TSALSASDGLVVATPVFKASYTGLFKMFFDILDTDALTGMPTIIAATA-GSARHSLVLDYALRPLLSYMRAV 150 (191)
T ss_dssp HHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCTTTTTTCEEEEEEEE-SSSTTTTHHHHTHHHHHHHTTCE
T ss_pred HHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhhhhcCCCEEEEEEeC-CCcchhhHHHHHHHHHHHHCCCE
Confidence 346789999999998877543344555555553322267898888873 21111111112255556666754
No 482
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=23.31 E-value=1.5e+02 Score=23.05 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=19.8
Q ss_pred cceeeEEEEEECCeEEEEEEEcCC--ChhhhhhhhHhhccCCcEEEEEEe
Q psy13390 99 GVEFGARMITIDGKQIKLQIWDTA--GQEAFRSITRSYYRGAAGALLVYD 146 (245)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~l~Dt~--G~~~~~~~~~~~~~~~d~vi~v~d 146 (245)
|.|.+...+.++.....+-++|.+ |.--.+.+++ .+...+ ++++.|
T Consensus 10 ~~~~~~~~~~~~~~~~~IgvfDSGvGGLtv~~~i~~-~lP~e~-~iy~~D 57 (274)
T 3uhf_A 10 GVDLGTENLYFQSNAMKIGVFDSGVGGLSVLKSLYE-ARLFDE-IIYYGD 57 (274)
T ss_dssp -------CCCCCCSCCEEEEEESSSTTHHHHHHHHH-TTCCSE-EEEEEC
T ss_pred ccccccceeeccCCCCeEEEEECCCChHHHHHHHHH-HCCCCC-EEEEec
Confidence 445555555555555567788864 4433333332 334433 355556
No 483
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=23.25 E-value=96 Score=22.64 Aligned_cols=72 Identities=6% Similarity=-0.110 Sum_probs=41.7
Q ss_pred HhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh---cCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcE
Q psy13390 132 RSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH---SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVF 204 (245)
Q Consensus 132 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 204 (245)
...+..||++||+.-..+..---.++.|+..+... .-.++|+.++++---.... .......+......++.+
T Consensus 68 ~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsgg~~g~-~~a~~~Lr~il~~lg~~~ 142 (199)
T 4hs4_A 68 AQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGG-ARAQNHLRQSLVFLDAYV 142 (199)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECSSSSCS-HHHHHHHHHHHHHTTCEE
T ss_pred HHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCCCCccc-HHHHHHHHHHHHHcCCEE
Confidence 44688999999999887643223344455555431 1157899998875321111 112345566666677543
No 484
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=23.24 E-value=59 Score=28.02 Aligned_cols=58 Identities=12% Similarity=-0.088 Sum_probs=39.1
Q ss_pred CCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390 169 SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 228 (245)
Q Consensus 169 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 228 (245)
-++|++|..|+..-..+.+ .+..++++...|+....+=++-|.|-.++-+.+++.+.+
T Consensus 373 fGvpvVVaiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~wa~GG~G~~~LA~~Vv~~~~~ 430 (557)
T 3pzx_A 373 FGVPAVVAINAFPTDTEAE--LNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLES 430 (557)
T ss_dssp TTCCEEEEEECCTTCCHHH--HHHHHHHCCSSEEEEECHHHHGGGGGHHHHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHHhc
Confidence 4699999999987532211 234455666677765544577888988888887777643
No 485
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=21.97 E-value=86 Score=20.70 Aligned_cols=68 Identities=10% Similarity=0.027 Sum_probs=38.6
Q ss_pred hccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEE
Q psy13390 134 YYRGAAGALLVYDITRRETFNH--LTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFM 205 (245)
Q Consensus 134 ~~~~~d~vi~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 205 (245)
.+..+|+++++.......-... +..++..+.... .++|+.++++--.-. .-............++.++
T Consensus 43 ~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~~l-~~k~~~~~~t~g~~~---~~~~~~l~~~l~~~g~~~~ 112 (137)
T 2fz5_A 43 DVASKDVILLGCPAMGSEELEDSVVEPFFTDLAPKL-KGKKVGLFGSYGWGS---GEWMDAWKQRTEDTGATVI 112 (137)
T ss_dssp HHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGGGC-SSCEEEEEEEESSCC---SHHHHHHHHHHHHTTCEEE
T ss_pred HHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhhhc-CCCEEEEEEecCCCC---chHHHHHHHHHHHCCCEEc
Confidence 3567899999987753221122 455555554322 568888888743211 1134455556666777643
No 486
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=21.73 E-value=3e+02 Score=21.68 Aligned_cols=82 Identities=15% Similarity=0.214 Sum_probs=47.0
Q ss_pred EEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEE-EEEeCCCCccCcccCHH
Q psy13390 114 IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNMVIM-LIGNKSDLDARREVKKE 191 (245)
Q Consensus 114 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pii-vv~nK~Dl~~~~~~~~~ 191 (245)
+.+.++|+++..-...+ ...+..||.+|++... +..++..+.+.+..+..... .+.++. +|+|..+.. .
T Consensus 164 ~D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~-e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~-------~ 234 (314)
T 3fwy_A 164 TDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------D 234 (314)
T ss_dssp CSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------H
T ss_pred CceEeeccCCcchhhhh-HhHHhhCCeEEEEeCC-cHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch-------h
Confidence 45677887654322222 2356779999999865 46677777776666655432 344442 567876642 2
Q ss_pred HHHHHHHHcCCcE
Q psy13390 192 EGEVFAREHGLVF 204 (245)
Q Consensus 192 ~~~~~~~~~~~~~ 204 (245)
+..+++...+.++
T Consensus 235 ~v~~~a~~~~~~~ 247 (314)
T 3fwy_A 235 EVDRFCKETNFRR 247 (314)
T ss_dssp HHHHHHHHHTCCE
T ss_pred HHHHHHHHhCCeE
Confidence 2344555555543
Done!