RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13390
(245 letters)
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 264 bits (677), Expect = 1e-90
Identities = 120/137 (87%), Positives = 132/137 (96%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
GVEFGARM+ IDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRRETFNHLT+
Sbjct: 55 GVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTS 114
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
WLEDARQHS+SNMVIMLIGNKSDL++RR+VK+EEGE FAREHGL+FMETSAK A NVEEA
Sbjct: 115 WLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA 174
Query: 219 FIDTAKEIYEKIQEGVF 235
FI+TAKEIY KIQ+G+F
Sbjct: 175 FINTAKEIYRKIQQGLF 191
Score = 114 bits (287), Expect = 8e-32
Identities = 53/65 (81%), Positives = 61/65 (93%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
MVIMLIGNKSDL++RR+VK+EEGE FAREHGL+FMETSAK A NVEEAFI+TAKEIY KI
Sbjct: 127 MVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186
Query: 61 QEGVF 65
Q+G+F
Sbjct: 187 QQGLF 191
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 262 bits (671), Expect = 8e-90
Identities = 87/138 (63%), Positives = 106/138 (76%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
GVEFG+++I + GK +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N LT
Sbjct: 44 GVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN 103
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
WL DAR ++ N+VI+L GNK DLDA REV E FA+E+ L+F+ETSA NVEEA
Sbjct: 104 WLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEA 163
Query: 219 FIDTAKEIYEKIQEGVFD 236
F+ A++I KI+ G D
Sbjct: 164 FVQCARKILNKIESGELD 181
Score = 111 bits (279), Expect = 1e-30
Identities = 35/66 (53%), Positives = 45/66 (68%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+VI+L GNK DLDA REV E FA+E+ L+F+ETSA NVEEAF+ A++I KI
Sbjct: 116 IVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 175
Query: 61 QEGVFD 66
+ G D
Sbjct: 176 ESGELD 181
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 260 bits (667), Expect = 7e-89
Identities = 84/138 (60%), Positives = 102/138 (73%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
GVEFG+R++ + GK +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L
Sbjct: 59 GVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAA 118
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
WL DAR ++ N+V++L GNK DLD REV E FA+E+ L+F+ETSA NVEEA
Sbjct: 119 WLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA 178
Query: 219 FIDTAKEIYEKIQEGVFD 236
F+ A+ I KI G D
Sbjct: 179 FLKCARTILNKIDSGELD 196
Score = 110 bits (278), Expect = 3e-30
Identities = 33/66 (50%), Positives = 42/66 (63%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+V++L GNK DLD REV E FA+E+ L+F+ETSA NVEEAF+ A+ I KI
Sbjct: 131 IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190
Query: 61 QEGVFD 66
G D
Sbjct: 191 DSGELD 196
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 252 bits (647), Expect = 3e-86
Identities = 85/130 (65%), Positives = 110/130 (84%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
GVEFG R+I + G++IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL++
Sbjct: 49 GVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS 108
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
WL DAR +N N VI+LIGNK+DL+A+R+V EE + FA E+GL+F+E SAK NVE+A
Sbjct: 109 WLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA 168
Query: 219 FIDTAKEIYE 228
F++ AK+IY+
Sbjct: 169 FLEAAKKIYQ 178
Score = 103 bits (259), Expect = 9e-28
Identities = 33/58 (56%), Positives = 47/58 (81%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
VI+LIGNK+DL+A+R+V EE + FA E+GL+F+E SAK NVE+AF++ AK+IY+
Sbjct: 121 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 254 bits (651), Expect = 3e-86
Identities = 67/142 (47%), Positives = 99/142 (69%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
GVEF R + I+GK+IK QIWDTAGQE +R+IT +YYRGA GAL+VYDI++ ++ +
Sbjct: 47 GVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNH 106
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
WL + R++++ N+ + LIGNKSDL R V EE + FA+E+ L+F ETSA + NV++A
Sbjct: 107 WLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKA 166
Query: 219 FIDTAKEIYEKIQEGVFDITNE 240
F + IY+K+ + D+ +
Sbjct: 167 FEELINTIYQKVSKHQMDLGDS 188
Score = 114 bits (286), Expect = 2e-31
Identities = 32/96 (33%), Positives = 54/96 (56%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+ + LIGNKSDL R V EE + FA+E+ L+F ETSA + NV++AF + IY+K+
Sbjct: 119 VAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKV 178
Query: 61 QEGVFDITNEANGIKIGPQHSPNNPSLPSGSSGSSS 96
+ D+ + + +PN P++ + + +
Sbjct: 179 SKHQMDLGDSSANGNANGASAPNGPTISLTPTPNEN 214
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 252 bits (647), Expect = 5e-86
Identities = 66/134 (49%), Positives = 93/134 (69%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
GVEF R + + +K QIWDTAG E +R+IT +YYRGA GALLV+D+T+ +T+ +
Sbjct: 59 GVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVER 118
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
WL++ H+ + +V+ML+GNKSDL REV EE +FA +GL+F+ETSA +TNVE A
Sbjct: 119 WLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELA 178
Query: 219 FIDTAKEIYEKIQE 232
F KEI+ K+ +
Sbjct: 179 FETVLKEIFAKVSK 192
Score = 106 bits (267), Expect = 8e-29
Identities = 33/62 (53%), Positives = 44/62 (70%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+V+ML+GNKSDL REV EE +FA +GL+F+ETSA +TNVE AF KEI+ K+
Sbjct: 131 IVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190
Query: 61 QE 62
+
Sbjct: 191 SK 192
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 252 bits (645), Expect = 8e-86
Identities = 73/129 (56%), Positives = 92/129 (71%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
GVEF R I +DGK IK QIWDTAG E +R+IT +YYRGA GALLVYDI + T+ ++
Sbjct: 63 GVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVER 122
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
WL++ R H++SN+VIML+GNKSDL R V +E FA ++GL F+ETSA +TNVE A
Sbjct: 123 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAA 182
Query: 219 FIDTAKEIY 227
F EIY
Sbjct: 183 FQTILTEIY 191
Score = 103 bits (259), Expect = 1e-27
Identities = 31/57 (54%), Positives = 38/57 (66%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
+VIML+GNKSDL R V +E FA ++GL F+ETSA +TNVE AF EIY
Sbjct: 135 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 252 bits (645), Expect = 1e-85
Identities = 75/144 (52%), Positives = 96/144 (66%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
GVEF R I +DGK IK QIWDTAGQE +R IT +YYRGA GALLVYDI + T+ ++
Sbjct: 39 GVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVER 98
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
WL++ R H++SN+VIML+GNKSDL R V +E FA ++ L F+ETSA +TNVEEA
Sbjct: 99 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEA 158
Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
F + EIY + + D
Sbjct: 159 FKNILTEIYRIVSQKQIADRAAHD 182
Score = 108 bits (271), Expect = 2e-29
Identities = 32/86 (37%), Positives = 44/86 (51%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+VIML+GNKSDL R V +E FA ++ L F+ETSA +TNVEEAF + EIY +
Sbjct: 111 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 170
Query: 61 QEGVFDITNEANGIKIGPQHSPNNPS 86
+ + + P
Sbjct: 171 SQKQIADRAAHDESPGNNVVDISVPP 196
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 251 bits (643), Expect = 3e-85
Identities = 62/142 (43%), Positives = 100/142 (70%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
GV+F + + +DGK +KLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +E+FN +
Sbjct: 42 GVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKM 101
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
WL++ +++ S ++ +L+GNK DL +R V+ + + FA + + F+ETSA +TNVE+A
Sbjct: 102 WLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDA 161
Query: 219 FIDTAKEIYEKIQEGVFDITNE 240
F+ A++I E + + + T +
Sbjct: 162 FLTMARQIKESMSQQNLNETTQ 183
Score = 112 bits (283), Expect = 5e-31
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
++ +L+GNK DL +R V+ + + FA + + F+ETSA +TNVE+AF+ A++I E +
Sbjct: 114 VLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM 173
Query: 61 QEGVFDITNEANGIKIGPQHSPNNPSLPSGS 91
+ + T + K + + G
Sbjct: 174 SQQNLNETTQKKEDKGNVNLKGQSLTNTGGC 204
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 251 bits (642), Expect = 3e-85
Identities = 68/142 (47%), Positives = 98/142 (69%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
GV+F R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++
Sbjct: 50 GVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 109
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
WL++ ++++ N+ +L+GNK DL ++ V + FA G+ F+ETSAK ATNVE++
Sbjct: 110 WLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 169
Query: 219 FIDTAKEIYEKIQEGVFDITNE 240
F+ A EI +++ G E
Sbjct: 170 FMTMAAEIKKRMGPGATAGGAE 191
Score = 114 bits (287), Expect = 1e-31
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+ +L+GNK DL ++ V + FA G+ F+ETSAK ATNVE++F+ A EI +++
Sbjct: 122 VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181
Query: 61 QEGVFDITNEANGIK 75
G E + +K
Sbjct: 182 GPGATAGGAEKSNVK 196
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 249 bits (637), Expect = 2e-84
Identities = 60/138 (43%), Positives = 92/138 (66%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
GV+F + + I+G+++KLQIWDTAGQE FRSIT+SYYR A +L YDIT E+F L
Sbjct: 60 GVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE 119
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
WL + Q++++ ++ +L+GNK DL RREV ++ E F+ + ++ETSAK + NVE+
Sbjct: 120 WLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKL 179
Query: 219 FIDTAKEIYEKIQEGVFD 236
F+D A + + ++
Sbjct: 180 FLDLACRLISEARQNTLV 197
Score = 105 bits (265), Expect = 2e-28
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
++ +L+GNK DL RREV ++ E F+ + ++ETSAK + NVE+ F+D A + +
Sbjct: 132 VITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 191
Query: 61 QEGVFD 66
++
Sbjct: 192 RQNTLV 197
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 248 bits (635), Expect = 3e-84
Identities = 60/134 (44%), Positives = 94/134 (70%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
G++F +++ +DG ++KLQ+WDTAGQE FRS+T +YYR A LL+YD+T + +F+++
Sbjct: 45 GIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQA 104
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
WL + +++ ++ +ML+GNK D R VK+E+GE A+E+GL FMETSAK NV+ A
Sbjct: 105 WLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164
Query: 219 FIDTAKEIYEKIQE 232
F AKE+ + +
Sbjct: 165 FTAIAKELKRRSMK 178
Score = 104 bits (262), Expect = 4e-28
Identities = 30/62 (48%), Positives = 41/62 (66%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+ +ML+GNK D R VK+E+GE A+E+GL FMETSAK NV+ AF AKE+ +
Sbjct: 117 VALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRS 176
Query: 61 QE 62
+
Sbjct: 177 MK 178
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 247 bits (634), Expect = 5e-84
Identities = 70/138 (50%), Positives = 96/138 (69%), Gaps = 1/138 (0%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
GV+F + + I GK++KLQIWDTAGQE FR+IT+SYYR A GA+L YDIT+R +F +
Sbjct: 63 GVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH 122
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATNVEE 217
W+ED R+++ SN+V +LIGNKSDL REV E + A + L +ETSAK ++NVEE
Sbjct: 123 WIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEE 182
Query: 218 AFIDTAKEIYEKIQEGVF 235
AF+ A E+ + +F
Sbjct: 183 AFLRVATELIMRHGGPLF 200
Score = 102 bits (257), Expect = 3e-27
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIYEK 59
+V +LIGNKSDL REV E + A + L +ETSAK ++NVEEAF+ A E+ +
Sbjct: 135 IVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194
Query: 60 IQEGVF 65
+F
Sbjct: 195 HGGPLF 200
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 247 bits (633), Expect = 1e-83
Identities = 59/144 (40%), Positives = 82/144 (56%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
G++F + I + K+IKLQIWDTAG E +R+IT +YYRGA G +L+YDIT E+FN +
Sbjct: 42 GIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQD 101
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
W + +S N ++L+GNK D++ R V E G A G F E SAK NV++
Sbjct: 102 WSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQT 161
Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
F I EK+ E + V
Sbjct: 162 FERLVDVICEKMSESLDTADPAVT 185
Score = 114 bits (287), Expect = 1e-31
Identities = 28/85 (32%), Positives = 38/85 (44%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
++L+GNK D++ R V E G A G F E SAK NV++ F I EK+
Sbjct: 114 AQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKM 173
Query: 61 QEGVFDITNEANGIKIGPQHSPNNP 85
E + G K GPQ +
Sbjct: 174 SESLDTADPAVTGAKQGPQLTDQQA 198
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 244 bits (625), Expect = 8e-83
Identities = 66/134 (49%), Positives = 99/134 (73%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
G++F R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT ++F+++
Sbjct: 42 GIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN 101
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
W+ + +H+++++ M++GNK D++ +R+V KE GE A ++G+ FMETSAK NVE A
Sbjct: 102 WIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENA 161
Query: 219 FIDTAKEIYEKIQE 232
F A++I K+ +
Sbjct: 162 FFTLARDIKAKMDK 175
Score = 103 bits (258), Expect = 2e-27
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+ M++GNK D++ +R+V KE GE A ++G+ FMETSAK NVE AF A++I K+
Sbjct: 114 VEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173
Query: 61 QE 62
+
Sbjct: 174 DK 175
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 244 bits (625), Expect = 1e-82
Identities = 55/134 (41%), Positives = 84/134 (62%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
G++F + + K++KLQIWDTAGQE +R+IT +YYRGA G +L+YDIT E+FN +
Sbjct: 57 GIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD 116
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
W + +S N ++L+GNK D++ R V E+G++ A + G F E SAK +V +A
Sbjct: 117 WATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA 176
Query: 219 FIDTAKEIYEKIQE 232
F I +K+ +
Sbjct: 177 FERLVDAICDKMSD 190
Score = 103 bits (258), Expect = 2e-27
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
++L+GNK D++ R V E+G++ A + G F E SAK +V +AF I +K+
Sbjct: 129 AQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKM 188
Query: 61 QE 62
+
Sbjct: 189 SD 190
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 244 bits (626), Expect = 1e-82
Identities = 66/132 (50%), Positives = 96/132 (72%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
GV+F R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++
Sbjct: 67 GVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 126
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
WL++ ++++ N+ +L+GNK DL ++ V + FA G+ F+ETSAK ATNVE++
Sbjct: 127 WLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 186
Query: 219 FIDTAKEIYEKI 230
F+ A EI +++
Sbjct: 187 FMTMAAEIKKRM 198
Score = 102 bits (257), Expect = 3e-27
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+ +L+GNK DL ++ V + FA G+ F+ETSAK ATNVE++F+ A EI +++
Sbjct: 139 VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 198
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 243 bits (622), Expect = 3e-82
Identities = 58/134 (43%), Positives = 81/134 (60%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
G++F + + K+IKLQIWDTAGQE +R+IT +YYRGA G LL+YDI +E+F +
Sbjct: 56 GIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD 115
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
W + +S N ++L+GNK DL+ R V E+G A + G F E SAK NV++
Sbjct: 116 WATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQV 175
Query: 219 FIDTAKEIYEKIQE 232
F I EK+ E
Sbjct: 176 FERLVDVICEKMNE 189
Score = 103 bits (260), Expect = 1e-27
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
++L+GNK DL+ R V E+G A + G F E SAK NV++ F I EK+
Sbjct: 128 AQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187
Query: 61 QE 62
E
Sbjct: 188 NE 189
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 241 bits (618), Expect = 8e-82
Identities = 56/136 (41%), Positives = 88/136 (64%), Gaps = 1/136 (0%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
GV+F R + I+G+++KLQIWDTAGQE FR+IT +YYRG G ++VYD+T E+F ++
Sbjct: 43 GVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR 102
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
WL + Q+ + ++ +L+GNK+D R+ V+ E+ FA + G+ ETSAK NVEE
Sbjct: 103 WLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM 161
Query: 219 FIDTAKEIYEKIQEGV 234
F + + ++ +
Sbjct: 162 FNCITELVLRAKKDNL 177
Score = 104 bits (262), Expect = 4e-28
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+ +L+GNK+D R+ V+ E+ FA + G+ ETSAK NVEE F + +
Sbjct: 114 VCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAK 173
Query: 61 QEGV 64
++ +
Sbjct: 174 KDNL 177
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 241 bits (618), Expect = 9e-82
Identities = 56/134 (41%), Positives = 86/134 (64%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
G F ++ + ++ +K +IWDTAGQE + S+ YYRGAA A++V+D+T + +F
Sbjct: 46 GAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKK 105
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
W+++ + N NMV+ L GNKSDL R+V E+ + +A+E+GL FMETSAK ATNV+E
Sbjct: 106 WVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEI 165
Query: 219 FIDTAKEIYEKIQE 232
F + A+ +
Sbjct: 166 FYEIARRLPRVQPT 179
Score = 101 bits (255), Expect = 4e-27
Identities = 30/62 (48%), Positives = 41/62 (66%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
MV+ L GNKSDL R+V E+ + +A+E+GL FMETSAK ATNV+E F + A+ +
Sbjct: 118 MVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQ 177
Query: 61 QE 62
Sbjct: 178 PT 179
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 240 bits (616), Expect = 1e-81
Identities = 54/130 (41%), Positives = 85/130 (65%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
G F + + +D +K +IWDTAGQE + S+ YYRGA A++VYDIT E+F
Sbjct: 40 GAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKN 99
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
W+++ ++ ++ N+VI L GNK+DL +R V +E + +A ++ L+FMETSAK + NV E
Sbjct: 100 WVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 159
Query: 219 FIDTAKEIYE 228
F+ AK++ +
Sbjct: 160 FMAIAKKLPK 169
Score = 102 bits (256), Expect = 2e-27
Identities = 26/58 (44%), Positives = 40/58 (68%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
+VI L GNK+DL +R V +E + +A ++ L+FMETSAK + NV E F+ AK++ +
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 240 bits (615), Expect = 2e-81
Identities = 65/134 (48%), Positives = 91/134 (67%), Gaps = 1/134 (0%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
G++F + + I+GK++KLQIWDTAGQE FR+IT +YYRGA G +LVYDIT TF ++
Sbjct: 37 GIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ 96
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
W + +H+N ++L+GNKSD++ R V ++GE A+E G+ F+E+SAK NV E
Sbjct: 97 WFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEI 155
Query: 219 FIDTAKEIYEKIQE 232
F AK I EKI
Sbjct: 156 FFTLAKLIQEKIDS 169
Score = 98.8 bits (247), Expect = 4e-26
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
++L+GNKSD++ R V ++GE A+E G+ F+E+SAK NV E F AK I EKI
Sbjct: 109 AQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
Query: 61 QE 62
Sbjct: 168 DS 169
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 240 bits (616), Expect = 2e-81
Identities = 59/133 (44%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
GV+F + + + GK+I+LQIWDTAGQE F SIT +YYR A G +LVYDIT++ETF+ L
Sbjct: 60 GVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK 119
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEE 217
W++ ++++ + ++L+GNK D + RE+ +++GE FA++ G+ F E SAK NV+E
Sbjct: 120 WMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDE 179
Query: 218 AFIDTAKEIYEKI 230
F+ +I +K+
Sbjct: 180 IFLKLVDDILKKM 192
Score = 98.1 bits (245), Expect = 1e-25
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
++L+GNK D + RE+ +++GE FA++ G+ F E SAK NV+E F+ +I +K
Sbjct: 132 AELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191
Query: 60 I 60
+
Sbjct: 192 M 192
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 239 bits (612), Expect = 5e-81
Identities = 53/130 (40%), Positives = 79/130 (60%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
G F + + + K IWDTAG E FR++ YYRG+A A++VYDIT+ ETF+ L
Sbjct: 40 GASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKN 99
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
W+ + RQH ++V+ + GNK DL REV + + + +A +F+ETSAK A N+ E
Sbjct: 100 WVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININEL 159
Query: 219 FIDTAKEIYE 228
FI+ ++ I
Sbjct: 160 FIEISRRIPS 169
Score = 100 bits (251), Expect = 1e-26
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
+V+ + GNK DL REV + + + +A +F+ETSAK A N+ E FI+ ++ I
Sbjct: 112 IVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 239 bits (612), Expect = 5e-81
Identities = 50/130 (38%), Positives = 76/130 (58%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
G F + + I GK++ L IWDTAGQE F ++ YYR + GA+LVYDIT ++F +
Sbjct: 40 GASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN 99
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
W+++ R+ + + + ++GNK DL+ R V +E E +A G TSAK +EE
Sbjct: 100 WVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEEL 159
Query: 219 FIDTAKEIYE 228
F+D K + E
Sbjct: 160 FLDLCKRMIE 169
Score = 100 bits (252), Expect = 8e-27
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
+ + ++GNK DL+ R V +E E +A G TSAK +EE F+D K + E
Sbjct: 112 ICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 240 bits (614), Expect = 1e-80
Identities = 63/142 (44%), Positives = 91/142 (64%), Gaps = 1/142 (0%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
G++F + + I+GK++KLQ+WDTAGQE FR+IT +YYRGA G +LVYD+T TF ++
Sbjct: 54 GIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ 113
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
W + +H+N ++L+GNKSD++ R V ++GE A+E G+ F+E+SAK NV E
Sbjct: 114 WFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEI 172
Query: 219 FIDTAKEIYEKIQEGVFDITNE 240
F AK I EKI
Sbjct: 173 FFTLAKLIQEKIDSNKLVGVGN 194
Score = 106 bits (266), Expect = 2e-28
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
++L+GNKSD++ R V ++GE A+E G+ F+E+SAK NV E F AK I EKI
Sbjct: 126 AQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184
Query: 61 QEGVFDITNEANGIKIGPQHSPNNPS 86
I N S
Sbjct: 185 DSNKLVGVGNGKEGNISINSGSGNSS 210
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 237 bits (608), Expect = 4e-80
Identities = 52/147 (35%), Positives = 86/147 (58%), Gaps = 11/147 (7%)
Query: 99 GVEFGARMITID----------GKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDIT 148
G++F + + G++I LQ+WDTAG E FRS+T +++R A G LL++D+T
Sbjct: 45 GIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLT 104
Query: 149 RRETFNHLTTWLEDARQHSNS-NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMET 207
++F ++ W+ + H+ S N I+L GNKSDL+ +R VK+EE A ++G+ + ET
Sbjct: 105 NEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFET 164
Query: 208 SAKLATNVEEAFIDTAKEIYEKIQEGV 234
SA TN+ A I ++++ V
Sbjct: 165 SAANGTNISHAIEMLLDLIMKRMERSV 191
Score = 106 bits (266), Expect = 1e-28
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
I+L GNKSDL+ +R VK+EE A ++G+ + ETSA TN+ A I +++
Sbjct: 128 PDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRM 187
Query: 61 QEGV 64
+ V
Sbjct: 188 ERSV 191
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 237 bits (607), Expect = 1e-79
Identities = 48/147 (32%), Positives = 88/147 (59%), Gaps = 11/147 (7%)
Query: 99 GVEFGARMITIDGK----------QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDIT 148
G++F + + + + ++ LQ+WDTAGQE FRS+T +++R A G LL++D+T
Sbjct: 59 GIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLT 118
Query: 149 RRETFNHLTTWLEDARQHSNS-NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMET 207
+++F ++ W+ + ++ N I+LIGNK+DL +REV + + A ++G+ + ET
Sbjct: 119 SQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFET 178
Query: 208 SAKLATNVEEAFIDTAKEIYEKIQEGV 234
SA NVE+A I +++++ V
Sbjct: 179 SAATGQNVEKAVETLLDLIMKRMEQCV 205
Score = 107 bits (269), Expect = 9e-29
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
I+LIGNK+DL +REV + + A ++G+ + ETSA NVE+A I +++
Sbjct: 142 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 201
Query: 61 QEGVFDITNEANGIKIG 77
++ V T + + G
Sbjct: 202 EQCVEK-TQIPDTVNGG 217
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 235 bits (603), Expect = 2e-79
Identities = 51/134 (38%), Positives = 80/134 (59%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
G F + + + K IWDTAGQE F S+ YYRG+A A++VYDIT++++F L
Sbjct: 57 GASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK 116
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
W+++ ++H N+V+ + GNK DL REV ++ + +A G + +ETSAK A N+EE
Sbjct: 117 WVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEEL 176
Query: 219 FIDTAKEIYEKIQE 232
F +++I
Sbjct: 177 FQGISRQIPPLDPH 190
Score = 99.2 bits (248), Expect = 6e-26
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+V+ + GNK DL REV ++ + +A G + +ETSAK A N+EE F +++I
Sbjct: 129 IVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLD 188
Query: 61 QE 62
Sbjct: 189 PH 190
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 235 bits (602), Expect = 4e-79
Identities = 64/135 (47%), Positives = 89/135 (65%), Gaps = 2/135 (1%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
GV+F + I++DG + KL IWDTAGQE FR++T SYYRGA G +LVYD+TRR+TF L
Sbjct: 49 GVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN 108
Query: 159 WLEDARQHSNSN-MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEE 217
WL + + N +V ML+GNK D + REV + EG FAR+H ++F+E SAK V+
Sbjct: 109 WLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQC 167
Query: 218 AFIDTAKEIYEKIQE 232
AF + ++I +
Sbjct: 168 AFEELVEKIIQTPGL 182
Score = 104 bits (262), Expect = 6e-28
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+V ML+GNK D + REV + EG FAR+H ++F+E SAK V+ AF + ++I +
Sbjct: 122 IVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 180
Query: 61 QEGVFDITNEANGIKIG 77
G+++ N+ +G G
Sbjct: 181 --GLWESENQNSGPSSG 195
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 235 bits (602), Expect = 4e-79
Identities = 53/137 (38%), Positives = 87/137 (63%), Gaps = 6/137 (4%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
GV+F + + +DG++ LQ+WDTAGQE FRSI +SY+R A G LL+YD+T ++F ++
Sbjct: 62 GVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE 121
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLD------ARREVKKEEGEVFAREHGLVFMETSAKLA 212
W++ ++ + IML+GNK+D+ ++ V GE A +G +F ETSAK
Sbjct: 122 WVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDG 181
Query: 213 TNVEEAFIDTAKEIYEK 229
+N+ EA + A+E+ ++
Sbjct: 182 SNIVEAVLHLAREVKKR 198
Score = 95.4 bits (238), Expect = 2e-24
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 1 MVIMLIGNKSDLD------ARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAK 54
+ IML+GNK+D+ ++ V GE A +G +F ETSAK +N+ EA + A+
Sbjct: 134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR 193
Query: 55 EIYEK 59
E+ ++
Sbjct: 194 EVKKR 198
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 235 bits (601), Expect = 7e-79
Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 99 GVEFGARMITIDGKQIKLQIW--DTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL 156
GVE +TI + ++++ DTAG + ++ Y+ G A+LV+D++ E+F
Sbjct: 56 GVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESC 115
Query: 157 TTWLEDARQ---HSNSNMVIMLIGNKSDL-DARREVKKEEGEVFAREHGLVFMETSAKL- 211
W E + + +L+ NK+DL R +V+ + + +A + L F + SA
Sbjct: 116 KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPP 175
Query: 212 ATNVEEAFIDTAKEIYEKIQEGVFDITNE 240
+ + F+ A Y ++ V +
Sbjct: 176 GKDADAPFLSIATTFYRNYEDKVAAFQDA 204
Score = 103 bits (259), Expect = 2e-27
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 1 MVIMLIGNKSDL-DARREVKKEEGEVFAREHGLVFMETSAKL-ATNVEEAFIDTAKEIYE 58
+ +L+ NK+DL R +V+ + + +A + L F + SA + + F+ A Y
Sbjct: 133 LRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192
Query: 59 KIQEGVFDITNEAN 72
++ V +
Sbjct: 193 NYEDKVAAFQDACR 206
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 233 bits (596), Expect = 2e-78
Identities = 54/129 (41%), Positives = 88/129 (68%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
G++F ++ + ++ + ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F+ +
Sbjct: 48 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSK 107
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
W++D R S+++IML+GNK+DL +R+V EEGE A+E ++F+ETSAK NV++
Sbjct: 108 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 167
Query: 219 FIDTAKEIY 227
F A +
Sbjct: 168 FRRVAAALP 176
Score = 99.2 bits (248), Expect = 5e-26
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
++IML+GNK+DL +R+V EEGE A+E ++F+ETSAK NV++ F A +
Sbjct: 120 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 234 bits (599), Expect = 2e-78
Identities = 55/146 (37%), Positives = 90/146 (61%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
G++F ++ + ++ + ++LQ+WDTAG E FRS+ SY R + A++VYDIT +F T
Sbjct: 50 GIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTK 109
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
W++D R S+++IML+GNK+DL +R+V EEGE A+E ++F+ETSAK NV++
Sbjct: 110 WIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 169
Query: 219 FIDTAKEIYEKIQEGVFDITNEVDLV 244
F A + + +D+
Sbjct: 170 FRRVAAALPGMESTQDRSREDMIDIK 195
Score = 103 bits (258), Expect = 3e-27
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
++IML+GNK+DL +R+V EEGE A+E ++F+ETSAK NV++ F A +
Sbjct: 122 VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME 181
Query: 61 QEGVFDITNEANGIKIGPQHSPNNPS 86
+ + PQ P +
Sbjct: 182 STQDRSREDMIDIKLEKPQEQPVSEG 207
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 233 bits (596), Expect = 2e-78
Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 5/135 (3%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFR-SITRSYYRGAAGALLVYDITRRETFNHLT 157
GV+F R + IDG++IK+Q+WDTAGQE FR S+ + YYR + VYD+T +F+ L
Sbjct: 54 GVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP 113
Query: 158 TWLEDARQHSNSNMV-IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLA---T 213
W+E+ +QH +N + +L+GNK DL + +V + + FA H + ETSAK
Sbjct: 114 AWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDND 173
Query: 214 NVEEAFIDTAKEIYE 228
+VE F+ A ++
Sbjct: 174 HVEAIFMTLAHKLKS 188
Score = 95.4 bits (238), Expect = 1e-24
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLA---TNVEEAFIDTAKEIY 57
+ +L+GNK DL + +V + + FA H + ETSAK +VE F+ A ++
Sbjct: 128 IPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187
Query: 58 E 58
Sbjct: 188 S 188
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 232 bits (594), Expect = 3e-78
Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 1/131 (0%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
GV+F R I ++ + ++L +WDTAGQE F +IT++YYRGA +LV+ T RE+F +++
Sbjct: 39 GVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISS 98
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
W E ++ L+ NK DL +K EE E A+ L F TS K NV E
Sbjct: 99 WREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEV 157
Query: 219 FIDTAKEIYEK 229
F A++ +K
Sbjct: 158 FKYLAEKHLQK 168
Score = 99.1 bits (248), Expect = 3e-26
Identities = 21/59 (35%), Positives = 28/59 (47%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
+ L+ NK DL +K EE E A+ L F TS K NV E F A++ +K
Sbjct: 110 IPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 228 bits (585), Expect = 7e-77
Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Query: 99 GVEFGARMITIDGK-QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT 157
G++F R IT+ G + LQIWD GQ + Y GA G LLVYDIT ++F +L
Sbjct: 40 GLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLE 99
Query: 158 TWLEDARQ---HSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATN 214
W ++ S + ++ L+GNK DL+ R +K E+ F +E+G SAK +
Sbjct: 100 DWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDS 159
Query: 215 VEEAFIDTAKEIYEKIQE 232
V F A EI
Sbjct: 160 VFLCFQKVAAEILGIKLN 177
Score = 101 bits (253), Expect = 7e-27
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
++ L+GNK DL+ R +K E+ F +E+G SAK +V F A EI
Sbjct: 116 PLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 175
Query: 61 QE 62
Sbjct: 176 LN 177
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 227 bits (581), Expect = 1e-75
Identities = 39/135 (28%), Positives = 64/135 (47%)
Query: 98 GGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT 157
G V + G IK +WDTAGQE + YY GA+GA+L +D+T R T +L
Sbjct: 45 GAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLA 104
Query: 158 TWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEE 217
W+++ + + I++ NK D+ R+++ K+ + + E SAK A N
Sbjct: 105 RWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGL 164
Query: 218 AFIDTAKEIYEKIQE 232
F+ A+ +
Sbjct: 165 PFLHLARIFTGRPDL 179
Score = 97.0 bits (242), Expect = 7e-25
Identities = 14/62 (22%), Positives = 26/62 (41%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
I++ NK D+ R+++ K+ + + E SAK A N F+ A+ +
Sbjct: 118 APIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRP 177
Query: 61 QE 62
Sbjct: 178 DL 179
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 224 bits (573), Expect = 1e-74
Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
G +F + + +D + + +QIWDTAGQE F+S+ ++YRGA +LV+D+T TF L +
Sbjct: 42 GADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS 101
Query: 159 WLEDARQHSN----SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATN 214
W ++ ++ N +++GNK DL+ R+ K ++ + + ETSAK A N
Sbjct: 102 WRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAIN 161
Query: 215 VEEAFIDTAKEIYEKIQEG 233
VE+AF A+ ++ E
Sbjct: 162 VEQAFQTIARNALKQETEV 180
Score = 98.1 bits (245), Expect = 2e-25
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+++GNK DL+ R+ K ++ + + ETSAK A NVE+AF A+ ++
Sbjct: 118 FPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 61 QEGVFDITNEANGIKIGPQHSPNNPS 86
E IK+ +
Sbjct: 178 TEVELY-NEFPEPIKLDKNERAKASA 202
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 221 bits (566), Expect = 6e-74
Identities = 47/137 (34%), Positives = 80/137 (58%), Gaps = 6/137 (4%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
GVEF + + +DG + +QIWDTAGQE FRS+ +YRG+ LL + + ++F +L+
Sbjct: 41 GVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN 100
Query: 159 WLEDARQHSN----SNMVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLAT 213
W ++ +++ + +++GNK D+ R+V EE + + R++G + ETSAK AT
Sbjct: 101 WKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDAT 159
Query: 214 NVEEAFIDTAKEIYEKI 230
NV AF + + +
Sbjct: 160 NVAAAFEEAVRRVLATE 176
Score = 88.0 bits (219), Expect = 7e-22
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIYEK 59
+++GNK D+ R+V EE + + R++G + ETSAK ATNV AF + + +
Sbjct: 117 FPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175
Query: 60 I 60
Sbjct: 176 E 176
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 210 bits (538), Expect = 1e-69
Identities = 47/140 (33%), Positives = 83/140 (59%), Gaps = 7/140 (5%)
Query: 99 GVEFGARMITIDG-KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT 157
G +F + +T+DG K +Q+WDTAGQE F+S+ ++YRGA +LVYD+T +F ++
Sbjct: 42 GADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIK 101
Query: 158 TWLEDARQHSN----SNMVIMLIGNKSDL-DARREVKKEEGEVFAREHGLV-FMETSAKL 211
+W ++ H+N +++GNK D ++++ V ++ + A+ G + TSAK
Sbjct: 102 SWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKN 161
Query: 212 ATNVEEAFIDTAKEIYEKIQ 231
A NV+ AF + A+ ++ Q
Sbjct: 162 AINVDTAFEEIARSALQQNQ 181
Score = 88.8 bits (221), Expect = 4e-22
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 1 MVIMLIGNKSDL-DARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDTAKEIYE 58
+++GNK D ++++ V ++ + A+ G + TSAK A NV+ AF + A+ +
Sbjct: 119 FPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178
Query: 59 KIQ 61
+ Q
Sbjct: 179 QNQ 181
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 211 bits (540), Expect = 1e-69
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 40/170 (23%)
Query: 99 GVEFGARMITIDGKQIK-------------------------------------LQIWDT 121
G F ++ ++ IK IWDT
Sbjct: 41 GASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDT 100
Query: 122 AGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSD 181
AGQE + SI YYRGA A++V+DI+ T + TW+ + SN +I+L+ NK D
Sbjct: 101 AGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS--SNYIIILVANKID 158
Query: 182 LDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 231
+ + +V E + +A+++ L+F++TSAK TN++ F A+EIY+ I
Sbjct: 159 KN-KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII 207
Score = 100 bits (251), Expect = 2e-26
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+I+L+ NK D + + +V E + +A+++ L+F++TSAK TN++ F A+EIY+ I
Sbjct: 148 YIIILVANKIDKN-KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206
Query: 61 Q 61
Sbjct: 207 I 207
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 212 bits (541), Expect = 2e-69
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 3/134 (2%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
GVE + + IK +WDTAGQE F + YY A A++++D+T R T+ ++
Sbjct: 49 GVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN 108
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
W D + N+ I+L GNK D+ R+ + VF R+ L + + SAK N E+
Sbjct: 109 WHRDLVRVCE-NIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKP 165
Query: 219 FIDTAKEIYEKIQE 232
F+ A+++
Sbjct: 166 FLWLARKLIGDPNL 179
Score = 88.5 bits (220), Expect = 1e-21
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+ I+L GNK D+ R+ + VF R+ L + + SAK N E+ F+ A+++
Sbjct: 120 IPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177
Query: 61 Q-EGVFDITNEANGIKIGPQ 79
E V + + P
Sbjct: 178 NLEFVAMPALAPPEVVMDPA 197
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 199 bits (509), Expect = 2e-65
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRS-YYRGAAGALLVYDITRRETFNHLT 157
+ R I +D +++ L ++D Q + + L+V+ +T R +F+ +
Sbjct: 36 SEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVP 95
Query: 158 TWLEDA-RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
L + ++ ++L+GNKSDL REV EEG A +ETSA L N
Sbjct: 96 ETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 155
Query: 217 EAFIDTAKEIYEK 229
E F ++I +
Sbjct: 156 ELFEGAVRQIRLR 168
Score = 95.3 bits (238), Expect = 9e-25
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
+ ++L+GNKSDL REV EEG A +ETSA L N E F ++I +
Sbjct: 110 LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 197 bits (503), Expect = 4e-64
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRS-YYRGAAGALLVYDITRRETFNHLT 157
+ R I +D +++ L ++D Q R + L+V+ +T R +F+ +
Sbjct: 57 PEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVP 116
Query: 158 TWLED-ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
L + ++ ++L+GNKSDL REV EEG A +ETSA L N
Sbjct: 117 ETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 176
Query: 217 EAFIDTAKEIYEKIQE 232
E F ++I +
Sbjct: 177 ELFEGAVRQIRLRRGR 192
Score = 95.7 bits (239), Expect = 1e-24
Identities = 23/62 (37%), Positives = 31/62 (50%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+ ++L+GNKSDL REV EEG A +ETSA L N E F ++I +
Sbjct: 131 LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRR 190
Query: 61 QE 62
Sbjct: 191 GR 192
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 191 bits (488), Expect = 4e-62
Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSIT--RSYYRGAAGALLVYDITRRETFNHL 156
G + R +T+DG+ L + DT E S +G + ++VY I R +F
Sbjct: 37 GEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESA 96
Query: 157 TTWLED-ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNV 215
+ R H ++ I+L+GNK+DL REV EEG A F+ETSA L NV
Sbjct: 97 SELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNV 156
Query: 216 EEAFIDTAKEIYEKIQE 232
E F +++ + ++
Sbjct: 157 AELFEGVVRQLRLRRRD 173
Score = 94.9 bits (237), Expect = 1e-24
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+ I+L+GNK+DL REV EEG A F+ETSA L NV E F +++ +
Sbjct: 112 VPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRR 171
Query: 61 QE 62
++
Sbjct: 172 RD 173
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 191 bits (487), Expect = 6e-62
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
++ ++DG +L I DTAGQE F ++ Y R G LLV+ I R++FN +
Sbjct: 48 KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQIL 107
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
R + ++L+GNK+DL+++R+V + E F H + + E SAKL NV+EAF
Sbjct: 108 RVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV 167
Query: 224 KEIYEK 229
+ + +
Sbjct: 168 RAVRKY 173
Score = 92.2 bits (230), Expect = 2e-23
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
++L+GNK+DL+++R+V + E F H + + E SAKL NV+EAF + + +
Sbjct: 115 FPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 173
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 190 bits (486), Expect = 7e-62
Identities = 45/126 (35%), Positives = 76/126 (60%), Gaps = 1/126 (0%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
+ + +DG+++++ I DTAGQE + +I +Y+R G L V+ IT E+F + E
Sbjct: 43 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 102
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
R + N+ +L+GNKSDL+ +R+V EE + A + + ++ETSAK NV++ F D
Sbjct: 103 RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162
Query: 224 KEIYEK 229
+EI +
Sbjct: 163 REIRAR 168
Score = 93.3 bits (233), Expect = 5e-24
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
+ +L+GNKSDL+ +R+V EE + A + + ++ETSAK NV++ F D +EI +
Sbjct: 110 VPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 189 bits (482), Expect = 4e-61
Identities = 46/129 (35%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
+ + +DG+++++ I DTAGQE + +I +Y+R G L V+ IT E+F + E
Sbjct: 57 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 116
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
R + N+ +L+GNKSDL+ +R+V EE + A + + ++ETSAK NV++ F D
Sbjct: 117 RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 176
Query: 224 KEIYEKIQE 232
+EI + E
Sbjct: 177 REIRARKME 185
Score = 93.0 bits (232), Expect = 1e-23
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+ +L+GNKSDL+ +R+V EE + A + + ++ETSAK NV++ F D +EI +
Sbjct: 124 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 183
Query: 61 QE 62
E
Sbjct: 184 ME 185
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 187 bits (478), Expect = 3e-60
Identities = 46/129 (35%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
+ + +DG+++++ I DTAGQE + +I +Y+R G L V+ IT E+F + E
Sbjct: 53 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 112
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
R + N+ +L+GNKSDL+ +R+V EE + A + + ++ETSAK NV++ F D
Sbjct: 113 RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 172
Query: 224 KEIYEKIQE 232
+EI + E
Sbjct: 173 REIRARKME 181
Score = 91.9 bits (229), Expect = 4e-23
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+ +L+GNKSDL+ +R+V EE + A + + ++ETSAK NV++ F D +EI +
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179
Query: 61 QE 62
E
Sbjct: 180 ME 181
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 187 bits (477), Expect = 4e-60
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 1/126 (0%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
+++T+ + L + DTAGQ+ + + S+ G G +LVY +T +F + + +
Sbjct: 63 KIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLH 122
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
H + + ++L+GNK+DL REV+ EG+ A G FME+SA+ + F
Sbjct: 123 EGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVI 182
Query: 224 KEIYEK 229
+EI
Sbjct: 183 QEIARV 188
Score = 91.9 bits (229), Expect = 4e-23
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
+ ++L+GNK+DL REV+ EG+ A G FME+SA+ + F +EI
Sbjct: 130 VPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 185 bits (471), Expect = 9e-60
Identities = 54/134 (40%), Positives = 82/134 (61%), Gaps = 3/134 (2%)
Query: 99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
G F + +TI+ +K +IWDTAGQE F S+ YYR A AL+VYD+T+ ++F
Sbjct: 37 GAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARH 96
Query: 159 WLEDARQHSNSNMVIMLIGNKSD---LDARREVKKEEGEVFAREHGLVFMETSAKLATNV 215
W+++ + ++ +++I L+GNK D R+V +EEGE A E GL+F ETSAK NV
Sbjct: 97 WVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENV 156
Query: 216 EEAFIDTAKEIYEK 229
+ F+ ++I K
Sbjct: 157 NDVFLGIGEKIPLK 170
Score = 71.4 bits (175), Expect = 1e-15
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 1 MVIMLIGNKSD---LDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
++I L+GNK D R+V +EEGE A E GL+F ETSAK NV + F+ ++I
Sbjct: 109 IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168
Query: 58 EK 59
K
Sbjct: 169 LK 170
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 185 bits (471), Expect = 1e-59
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
R I +DG++ L ++D Q+ R + ++VY +T + +F +
Sbjct: 40 RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR 99
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
R ++ I+L+GNKSDL REV +EG A F+ETSA L NV+ F
Sbjct: 100 RARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159
Query: 224 KEIYEK 229
++I +
Sbjct: 160 RQIRLR 165
Score = 91.8 bits (229), Expect = 2e-23
Identities = 24/58 (41%), Positives = 32/58 (55%)
Query: 2 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
I+L+GNKSDL REV +EG A F+ETSA L NV+ F ++I +
Sbjct: 108 PIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 182 bits (465), Expect = 1e-58
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
++IT++G++ LQ+ DTAGQ+ + ++Y G +LVY +T ++F +
Sbjct: 45 KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLL 104
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ IML+GNK DL R + EEG+ A F+E+SAK + F
Sbjct: 105 DMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164
Query: 224 KEIYEK 229
E +
Sbjct: 165 LEAEKM 170
Score = 88.7 bits (221), Expect = 4e-22
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
+ IML+GNK DL R + EEG+ A F+E+SAK + F E +
Sbjct: 112 IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKM 170
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 179 bits (457), Expect = 2e-57
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWL 160
+F + I +D L+I DTAG E F S+ Y + G +LVY + +++F +
Sbjct: 38 DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMR 97
Query: 161 ED-ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
+ R + ++L+GNK DL++ REV EG A E G FMETSAK T V+E F
Sbjct: 98 DQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF 157
Query: 220 IDTAKEI 226
+ +++
Sbjct: 158 AEIVRQM 164
Score = 88.3 bits (220), Expect = 5e-22
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
+ ++L+GNK DL++ REV EG A E G FMETSAK T V+E F + +++
Sbjct: 109 VPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 180 bits (458), Expect = 2e-57
Identities = 39/127 (30%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
+ ID + L + DTAGQE F ++ Y R G L+VY +T + +F H+ + +
Sbjct: 57 KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL 116
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT-NVEEAFIDT 222
R + ++L+ NK DL R+V +++G+ A ++ + ++ETSAK NV++ F D
Sbjct: 117 RVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 176
Query: 223 AKEIYEK 229
+ I ++
Sbjct: 177 VRVIRQQ 183
Score = 87.2 bits (217), Expect = 2e-21
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT-NVEEAFIDTAKEIYEK 59
++L+ NK DL R+V +++G+ A ++ + ++ETSAK NV++ F D + I ++
Sbjct: 126 MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 174 bits (443), Expect = 2e-55
Identities = 44/127 (34%), Positives = 60/127 (47%), Gaps = 2/127 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
++I+ D LQI DT G F ++ R +LVY IT R++ L E
Sbjct: 42 QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQIC 101
Query: 165 QH--SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDT 222
+ ++ IML+GNK D REV+ E E AR FMETSAKL NV+E F +
Sbjct: 102 EIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161
Query: 223 AKEIYEK 229
+
Sbjct: 162 LNLEKRR 168
Score = 87.6 bits (218), Expect = 1e-21
Identities = 26/57 (45%), Positives = 31/57 (54%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
IML+GNK D REV+ E E AR FMETSAKL NV+E F + +
Sbjct: 112 IMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 168
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 173 bits (442), Expect = 3e-55
Identities = 43/125 (34%), Positives = 72/125 (57%), Gaps = 2/125 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNS-NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S ++ ++L+GNKSDL R V+ + + AR +G+ ++ETSAK VE+AF
Sbjct: 102 RVKDSDDVPMVLVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEIYE 228
+EI +
Sbjct: 161 REIRQ 165
Score = 82.5 bits (205), Expect = 7e-20
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
++L+GNKSDL R V+ + + AR +G+ ++ETSAK VE+AF +EI +
Sbjct: 111 MVLVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 175 bits (445), Expect = 4e-55
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 6/138 (4%)
Query: 99 GVEFGARMITIDGKQ---IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH 155
G + R + +DG+ I L +W+ G+ + + + L+VY IT R +F
Sbjct: 72 GEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEK 129
Query: 156 LTTWLED-ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATN 214
+ R ++ I+L+GNKSDL REV EG A F+ETSA + N
Sbjct: 130 ASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHN 189
Query: 215 VEEAFIDTAKEIYEKIQE 232
V+E F +++ +
Sbjct: 190 VKELFEGIVRQVRLRRDS 207
Score = 92.4 bits (230), Expect = 4e-23
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
+ I+L+GNKSDL REV EG A F+ETSA + NV+E F +++ +
Sbjct: 146 IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR 205
Query: 61 QE 62
Sbjct: 206 DS 207
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 172 bits (439), Expect = 8e-55
Identities = 47/124 (37%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
+ + +D +Q L+I DTAG E F ++ Y + G LVY IT + TFN L E
Sbjct: 42 KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL 101
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREH-GLVFMETSAKLATNVEEAFIDT 222
R ++ ++L+GNK DL+ R V KE+G+ AR+ F+E+SAK NV E F D
Sbjct: 102 RVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161
Query: 223 AKEI 226
++I
Sbjct: 162 VRQI 165
Score = 82.9 bits (206), Expect = 5e-20
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREH-GLVFMETSAKLATNVEEAFIDTAKEI 56
++L+GNK DL+ R V KE+G+ AR+ F+E+SAK NV E F D ++I
Sbjct: 111 MILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 173 bits (440), Expect = 1e-54
Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 5/128 (3%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITR-SYYRGAAGALLVYDITRRETFNHLTTWLED- 162
TID + + ++I DTAGQE +I R + R G +LVYDIT R +F +
Sbjct: 67 HQATIDDEVVSMEILDTAGQE--DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNIL 124
Query: 163 ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLA-TNVEEAFID 221
N+ ++L+GNK+DLD R+V EEGE A E F E SA N+ E F +
Sbjct: 125 DEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYE 184
Query: 222 TAKEIYEK 229
+E+ +
Sbjct: 185 LCREVRRR 192
Score = 87.7 bits (218), Expect = 1e-21
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLA-TNVEEAFIDTAKEIYEK 59
+ ++L+GNK+DLD R+V EEGE A E F E SA N+ E F + +E+ +
Sbjct: 133 VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 171 bits (435), Expect = 7e-54
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
++I+ D LQI DT G F ++ R +LV+ +T +++ L +
Sbjct: 47 QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIV 106
Query: 165 Q--HSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDT 222
Q S ++ +ML+GNK D +REV E + A+E FMETSAK+ NV+E F +
Sbjct: 107 QIKGSVEDIPVMLVGNKCDET-QREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQEL 165
Query: 223 AKEIYEKIQE 232
+
Sbjct: 166 LTLETRRNMS 175
Score = 83.8 bits (208), Expect = 4e-20
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 62
+ML+GNK D +REV E + A+E FMETSAK+ NV+E F + +
Sbjct: 117 VMLVGNKCDET-QREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMS 175
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 170 bits (434), Expect = 9e-54
Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
T+D + + L++ DTA + R+ R Y A L+VY + R++F+ +++LE
Sbjct: 60 SEETVDHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLA 118
Query: 165 QH---SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKL-ATNVEEAFI 220
H + ++ +L+GNK D+ R+V K EG A G +F E SA L +V+ F
Sbjct: 119 LHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFH 178
Query: 221 DTAKEIYEK 229
+ +E +
Sbjct: 179 EAVREARRE 187
Score = 85.7 bits (213), Expect = 6e-21
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKL-ATNVEEAFIDTAKEIYEK 59
+ +L+GNK D+ R+V K EG A G +F E SA L +V+ F + +E +
Sbjct: 128 IPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARRE 187
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 170 bits (432), Expect = 2e-53
Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 2/129 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E
Sbjct: 43 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
R + ++ ++L+GNK DL + R V ++ + AR +G+ F+ETSAK V++AF
Sbjct: 103 RVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
Query: 224 KEIYEKIQE 232
+EI + ++
Sbjct: 162 REIRKHKEK 170
Score = 82.3 bits (204), Expect = 1e-19
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 62
++L+GNK DL +R V ++ + AR +G+ F+ETSAK V++AF +EI + ++
Sbjct: 112 MVLVGNKCDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 168 bits (428), Expect = 8e-53
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 99 GVEFGARMITIDGKQ---IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH 155
G + R + +DG+ I L +W+ G+ + + + L+VY IT R +F
Sbjct: 41 GEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEK 98
Query: 156 LTTWLED-ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATN 214
+ R ++ I+L+GNKSDL REV EG A F+ETSA + N
Sbjct: 99 ASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHN 158
Query: 215 VEEAFIDTAKEIYEK 229
V+E F +++ +
Sbjct: 159 VKELFEGIVRQVRLR 173
Score = 83.9 bits (208), Expect = 4e-20
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
+ I+L+GNKSDL REV EG A F+ETSA + NV+E F +++ +
Sbjct: 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLR 173
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 168 bits (427), Expect = 1e-52
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + IDG+ L I DTAGQE + ++ Y R G L V+ I ++F + + E +
Sbjct: 60 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK 119
Query: 165 QHSNSNMV-IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
+ +S+ V ++L+GNK DL R V ++ A+ +G+ F+ETSAK VE+AF
Sbjct: 120 RVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLV 178
Query: 224 KEIYEK 229
+EI +
Sbjct: 179 REIRQY 184
Score = 81.9 bits (203), Expect = 2e-19
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
++L+GNK DL R V ++ A+ +G+ F+ETSAK VE+AF +EI +
Sbjct: 129 MVLVGNKCDLPTR-TVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQY 184
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 164 bits (416), Expect = 4e-51
Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 9/142 (6%)
Query: 99 GVEFGARMITIDGKQ---IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRET-FN 154
G++ I I K+ + L +WD AG+E F S + A L VYD+++ + +
Sbjct: 38 GIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVD 97
Query: 155 HLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVK---KEEGEVFAREHGLVF-METSAK 210
+ WL + + + S+ ++L+G D+ ++ K + + + G +
Sbjct: 98 AMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFV 156
Query: 211 LATNVEEAFIDTAKEIYEKIQE 232
AT +A K I +
Sbjct: 157 NATEESDALAKLRKTIINESLN 178
Score = 57.8 bits (140), Expect = 1e-10
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 4/65 (6%)
Query: 2 VIMLIGNKSDLDARREVK---KEEGEVFAREHGLVF-METSAKLATNVEEAFIDTAKEIY 57
++L+G D+ ++ K + + + G + AT +A K I
Sbjct: 114 PVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTII 173
Query: 58 EKIQE 62
+
Sbjct: 174 NESLN 178
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 152 bits (386), Expect = 1e-46
Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 9/132 (6%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
+ I +DG+ L I D G + + + V+ + +F + +
Sbjct: 58 KEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLC 112
Query: 164 RQHSNSNMVIMLIGNKSDLDA--RREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFI 220
+ S + ++L+G + + A R + + + + ET A NVE F
Sbjct: 113 SFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQ 172
Query: 221 DTAKEIYEKIQE 232
D A+++ ++
Sbjct: 173 DVAQKVVALRKK 184
Score = 76.4 bits (189), Expect = 2e-17
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 3 IMLIGNKSDLDA--RREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDTAKEIYEK 59
++L+G + + A R + + + + ET A NVE F D A+++
Sbjct: 122 MVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181
Query: 60 IQE 62
++
Sbjct: 182 RKK 184
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 142 bits (360), Expect = 8e-43
Identities = 18/134 (13%), Positives = 46/134 (34%), Gaps = 11/134 (8%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
+ + +DG+ + I + AG + + A + V+ + +F ++
Sbjct: 45 KEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLS 99
Query: 165 QH-----SNSNMVIMLIGNKSDLDARREVKKEEGEVF-AREHGLVFMETSAKLATNVEEA 218
+ ++ ++ + R V A + ET A NV+
Sbjct: 100 SLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRV 159
Query: 219 FIDTAKEIYEKIQE 232
F + A+++ ++
Sbjct: 160 FQEVAQKVVTLRKQ 173
Score = 66.9 bits (164), Expect = 6e-14
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 1 MVIMLIGNKSDLDARREVKKEEGEVF-AREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
+ ++ ++ + R V A + ET A NV+ F + A+++
Sbjct: 111 LALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTL 170
Query: 60 IQE 62
++
Sbjct: 171 RKQ 173
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 150 bits (381), Expect = 1e-42
Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 4/122 (3%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
+ K+ WD GQE + + + ++ +L+ D T ++ WL ++
Sbjct: 92 DDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYG 148
Query: 168 NSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 227
++++ NK D + +++++ F S K VE +
Sbjct: 149 G-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVL 207
Query: 228 EK 229
Sbjct: 208 HP 209
Score = 69.2 bits (169), Expect = 8e-14
Identities = 8/58 (13%), Positives = 19/58 (32%)
Query: 2 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
++++ NK D + +++++ F S K VE +
Sbjct: 152 PVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHP 209
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 120 bits (302), Expect = 6e-34
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDARQ 165
+ ++ L +WDTAGQE + + Y + LL + + R +F N T W + +
Sbjct: 64 MKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH 123
Query: 166 HSNSNMVIMLIGNKSDL--DARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDT 222
+ +L+G K DL D +V K+EG+ ++ G V ++E S+ + E F +
Sbjct: 124 YI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF-EK 181
Query: 223 A 223
+
Sbjct: 182 S 182
Score = 58.5 bits (142), Expect = 9e-11
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 3 IMLIGNKSDL--DARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDTA 53
+L+G K DL D +V K+EG+ ++ G V ++E S+ + E F + +
Sbjct: 130 TVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF-EKS 182
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 110 bits (278), Expect = 1e-30
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 14/130 (10%)
Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDAR 164
+ ++G + L +WDTAGQE + + YRGA +L + + + ++ N W+ + +
Sbjct: 48 NVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK 107
Query: 165 QHSNSNMVIMLIGNKSDL----------DARREVKKEEGEVFAREHGLV-FMETSAKLAT 213
++ + I+L+G K DL + +GE + G ++E S+K
Sbjct: 108 HYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQE 166
Query: 214 NVEEAFIDTA 223
NV+ F D A
Sbjct: 167 NVKGVF-DAA 175
Score = 50.1 bits (120), Expect = 7e-08
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
Query: 3 IMLIGNKSDL----------DARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFID 51
I+L+G K DL + +GE + G ++E S+K NV+ F D
Sbjct: 115 IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF-D 173
Query: 52 TA 53
A
Sbjct: 174 AA 175
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 109 bits (274), Expect = 1e-29
Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDARQ 165
+ +DG+ + L +WDTAGQE + + YRGA +L + + + ++ N L W+ + R+
Sbjct: 50 VAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRR 109
Query: 166 HSNSNMVIMLIGNKSDL--------DARREVKKEEGEVFAREHGLV-FMETSAKLATNVE 216
+ N+ I+L+G K DL D + +GE ++ G ++E S+K NV+
Sbjct: 110 FA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVK 168
Query: 217 EAFIDTA 223
F DTA
Sbjct: 169 AVF-DTA 174
Score = 53.5 bits (129), Expect = 6e-09
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 3 IMLIGNKSDL--------DARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDTA 53
I+L+G K DL D + +GE ++ G ++E S+K NV+ F DTA
Sbjct: 116 IVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF-DTA 174
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 109 bits (274), Expect = 1e-29
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDAR 164
+ + GK + L IWDTAGQ+ + + +Y A+ LL +D+T +F N W +
Sbjct: 74 NLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN 133
Query: 165 QHSNSNMVIMLIGNKSDLDARRE------------VKKEEGEVFAREHGLV-FMETSAKL 211
+ I+++G K+DL + V G+ AR G V ++E SA+L
Sbjct: 134 HF-CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARL 192
Query: 212 ATNVEEAFIDTA 223
NV F A
Sbjct: 193 HDNVHAVF-QEA 203
Score = 48.6 bits (116), Expect = 3e-07
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Query: 3 IMLIGNKSDLDARRE------------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+++G K+DL + V G+ AR G V ++E SA+L NV F
Sbjct: 141 IIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200
Query: 50 IDTA 53
A
Sbjct: 201 -QEA 203
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 105 bits (265), Expect = 2e-28
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 16/137 (11%)
Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTW 159
E I +DGKQ++L +WDTAGQE + + Y L+ + I ++ N W
Sbjct: 60 ENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW 119
Query: 160 LEDARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FME 206
+ + N+ I+L+GNK DL + V+ EEG A ++E
Sbjct: 120 TPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178
Query: 207 TSAKLATNVEEAFIDTA 223
SAK V E F + A
Sbjct: 179 CSAKTKEGVREVF-EMA 194
Score = 47.1 bits (112), Expect = 9e-07
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 14/64 (21%)
Query: 3 IMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+L+GNK DL + V+ EEG A ++E SAK V E F
Sbjct: 132 IILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
Query: 50 IDTA 53
+ A
Sbjct: 192 -EMA 194
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 107 bits (268), Expect = 2e-28
Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 48/164 (29%)
Query: 110 DGKQIKLQIW-------DTAGQEAFRSITRSYYRGAA----------------------- 139
D + K+ I D Q + + Y + AA
Sbjct: 91 DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQD 150
Query: 140 --------------GALLVYDITR--RETFNHLTTWLEDARQH-SNSNMVIMLIGNKSDL 182
G LL D++R F+ ++ + + + I+++ K D
Sbjct: 151 FEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDE 210
Query: 183 DARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
R ++ +++ L +ETSA+ NV+ AF + I
Sbjct: 211 GVERYIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLVQLI 253
Score = 79.3 bits (195), Expect = 6e-18
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
I+++ K D R ++ +++ L +ETSA+ NV+ AF + I
Sbjct: 201 IVVVLTKCDEGVERYIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLVQLI 253
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 105 bits (263), Expect = 4e-28
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDAR 164
I +DGKQ++L +WDTAGQE + + Y L+ + + ++ N W+ + +
Sbjct: 65 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK 124
Query: 165 QHSNSNMVIMLIGNKSDLDARRE------------VKKEEGEVFAREHGLV-FMETSAKL 211
N+ I+L+ NK DL + V+ ++G A ++E SAK
Sbjct: 125 HFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKT 183
Query: 212 ATNVEEAFIDTA 223
V E F +TA
Sbjct: 184 KEGVREVF-ETA 194
Score = 47.4 bits (113), Expect = 8e-07
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 14/64 (21%)
Query: 3 IMLIGNKSDLDARRE------------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+L+ NK DL + V+ ++G A ++E SAK V E F
Sbjct: 132 IILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191
Query: 50 IDTA 53
+TA
Sbjct: 192 -ETA 194
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 104 bits (260), Expect = 1e-27
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTW 159
+ + + +DGK + L +WDTAGQE + + Y L+ + + +F N W
Sbjct: 65 DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 124
Query: 160 LEDARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FME 206
+ R H N I+L+G K DL + +G A+E G V ++E
Sbjct: 125 YPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183
Query: 207 TSAKLATNVEEAFIDTA 223
SA ++ F D A
Sbjct: 184 CSALTQRGLKTVF-DEA 199
Score = 47.1 bits (112), Expect = 1e-06
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 14/64 (21%)
Query: 3 IMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+L+G K DL + +G A+E G V ++E SA ++ F
Sbjct: 137 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
Query: 50 IDTA 53
D A
Sbjct: 197 -DEA 199
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 101 bits (253), Expect = 6e-27
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 16/138 (11%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTT 158
+ + + +DGK + L +WDTAGQE + + Y +L+ + + +F N
Sbjct: 39 FDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAK 98
Query: 159 WLEDARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FM 205
W + R H N I+L+G K DL + +G A+E G V ++
Sbjct: 99 WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 157
Query: 206 ETSAKLATNVEEAFIDTA 223
E SA ++ F D A
Sbjct: 158 ECSALTQRGLKTVF-DEA 174
Score = 45.5 bits (108), Expect = 3e-06
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 14/64 (21%)
Query: 3 IMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+L+G K DL + +G A+E G V ++E SA ++ F
Sbjct: 112 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
Query: 50 IDTA 53
D A
Sbjct: 172 -DEA 174
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 98.2 bits (245), Expect = 1e-25
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 17/133 (12%)
Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDAR 164
ID ++I+L +WDT+G + ++ Y + L+ +DI+R ET + L W + +
Sbjct: 47 SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 106
Query: 165 QHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKL 211
+ N ++L+G KSDL + V ++G A++ G ++E SA
Sbjct: 107 EFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 165
Query: 212 ATN-VEEAFIDTA 223
+ N V + F A
Sbjct: 166 SENSVRDIF-HVA 177
Score = 42.0 bits (99), Expect = 4e-05
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 15/65 (23%)
Query: 3 IMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKLATN-VEEA 48
++L+G KSDL + V ++G A++ G ++E SA + N V +
Sbjct: 114 MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 173
Query: 49 FIDTA 53
F A
Sbjct: 174 F-HVA 177
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 98.3 bits (245), Expect = 2e-25
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH-LTTWLEDAR 164
++++DG+ ++LQ+ DTAGQ+ F + Y LL + + +F + W+ + R
Sbjct: 60 VVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR 119
Query: 165 QHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKL 211
H I+L+G +SDL + V +E ++ A E ++E SA
Sbjct: 120 CHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALT 178
Query: 212 ATNVEEAFIDTA 223
N++E F D A
Sbjct: 179 QKNLKEVF-DAA 189
Score = 46.6 bits (111), Expect = 1e-06
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 3 IMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+L+G +SDL + V +E ++ A E ++E SA N++E F
Sbjct: 127 IILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
Query: 50 IDTA 53
D A
Sbjct: 187 -DAA 189
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 97.1 bits (242), Expect = 5e-25
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 17/133 (12%)
Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDAR 164
ID ++I+L +WDT+G + ++ Y + L+ +DI+R ET + L W + +
Sbjct: 68 SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 127
Query: 165 QHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKL 211
+ N ++L+G KSDL + V ++G A++ G ++E SA
Sbjct: 128 EFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 186
Query: 212 ATN-VEEAFIDTA 223
+ N V + F A
Sbjct: 187 SENSVRDIF-HVA 198
Score = 42.0 bits (99), Expect = 5e-05
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 15/65 (23%)
Query: 3 IMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKLATN-VEEA 48
++L+G KSDL + V ++G A++ G ++E SA + N V +
Sbjct: 135 MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 194
Query: 49 FIDTA 53
F A
Sbjct: 195 F-HVA 198
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 93.4 bits (232), Expect = 2e-23
Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDAR 164
+ + ++++L +WDT+G + ++ Y + LL +DI+R ET + L W +
Sbjct: 67 CLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL 126
Query: 165 QHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKL 211
+ + ++LIG K+DL + + E+G A++ G ++E SA
Sbjct: 127 DYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFT 185
Query: 212 A-TNVEEAFIDTA 223
+ ++ F TA
Sbjct: 186 SEKSIHSIF-RTA 197
Score = 38.7 bits (90), Expect = 6e-04
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 15/65 (23%)
Query: 3 IMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKLA-TNVEEA 48
++LIG K+DL + + E+G A++ G ++E SA + ++
Sbjct: 134 VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 193
Query: 49 FIDTA 53
F TA
Sbjct: 194 F-RTA 197
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 92.6 bits (230), Expect = 2e-23
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 16/132 (12%)
Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH-LTTWLEDAR 164
+T+ GKQ L ++DTAGQE + + Y L+ + + +F + W+ + +
Sbjct: 58 SVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK 117
Query: 165 QHSNSNMVIMLIGNKSDL----------DARRE--VKKEEGEVFAREHGLV-FMETSAKL 211
+++ N+ +LIG + DL + +E + E+G+ A+E G ++E SA
Sbjct: 118 EYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALT 176
Query: 212 ATNVEEAFIDTA 223
++ F D A
Sbjct: 177 QKGLKTVF-DEA 187
Score = 41.7 bits (98), Expect = 6e-05
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 3 IMLIGNKSDL----------DARRE--VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
+LIG + DL + +E + E+G+ A+E G ++E SA ++ F
Sbjct: 125 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
Query: 50 IDTA 53
D A
Sbjct: 185 -DEA 187
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 88.1 bits (218), Expect = 1e-20
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 16/132 (12%)
Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDAR 164
+ +DGK + L +WDTAG E + + Y L+ + + +F + W + R
Sbjct: 195 NVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR 254
Query: 165 QHSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKL 211
H N I+L+G K DL D + + +G A+E G V ++E SA
Sbjct: 255 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 313
Query: 212 ATNVEEAFIDTA 223
++ F D A
Sbjct: 314 QRGLKTVF-DEA 324
Score = 43.8 bits (103), Expect = 2e-05
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Query: 3 IMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
I+L+G K DL D + + +G A+E G V ++E SA ++ F
Sbjct: 262 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
Query: 50 IDTA 53
D A
Sbjct: 322 -DEA 324
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 68.6 bits (168), Expect = 2e-14
Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 6/131 (4%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE-----D 162
+ G + + ++ GQ + + + RG G + V D + +
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLA 127
Query: 163 ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDT 222
+ ++ I++ NK DL V + V E +E A V E +
Sbjct: 128 EYGLTLDDVPIVIQVNKRDLPDALPV-EMVRAVVDPEGKFPVLEAVATEGKGVFETLKEV 186
Query: 223 AKEIYEKIQEG 233
++ + ++ G
Sbjct: 187 SRLVLARVAGG 197
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 58.1 bits (140), Expect = 1e-10
Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 18/122 (14%)
Query: 114 IKLQIWDTAGQEAFRSIT---RSYYRGAAGALLVYDITRR--ETFNHLTTWLEDARQHSN 168
+ QIWD GQ F T +RG + V D E L + A + N
Sbjct: 69 VNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-N 127
Query: 169 SNMVIMLIGNKSDL-------DARREVKKEEGEVFARE----HGLVFMETSAKLATNVEE 217
+M + +K D + +R++ + + A L F TS + + E
Sbjct: 128 PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHS-IFE 186
Query: 218 AF 219
AF
Sbjct: 187 AF 188
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 55.8 bits (135), Expect = 7e-10
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
T++ K I +WD GQ+ R + R Y++ G + V D RE L+ Q
Sbjct: 67 TVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQED 126
Query: 168 N-SNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
+ V+++ NK D+ E+ + G R T A T + +
Sbjct: 127 ELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGL 182
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 55.3 bits (134), Expect = 9e-10
Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ-- 165
T+ K +K Q+WD G + R R YY + V D R+ + ++
Sbjct: 45 TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD-------RIGISKSEL 97
Query: 166 ------HSNSNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
++++ NK D++ E+ G ++ +TSA T ++
Sbjct: 98 VAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157
Query: 217 EAF 219
EA
Sbjct: 158 EAM 160
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 55.0 bits (133), Expect = 1e-09
Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 6/118 (5%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH- 166
+ ++D +GQ +R++ YY+ + V D + R L+ H
Sbjct: 61 KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP 120
Query: 167 --SNSNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
+ + I+ NK DL +V + ++ + A ++E
Sbjct: 121 DIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGV 178
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 54.6 bits (132), Expect = 2e-09
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH- 166
T+ K I ++WD GQ R R Y+ + V D T R+ + A+
Sbjct: 60 TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD-------RMGVAKHEL 112
Query: 167 -------SNSNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
++++ NK DL + E+ ++ G +++S+K +
Sbjct: 113 YALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172
Query: 217 EAF 219
E
Sbjct: 173 EGM 175
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 53.3 bits (129), Expect = 3e-09
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
T++ K I +WD GQ+ R + R Y++ G + V D RE N L
Sbjct: 38 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 97
Query: 168 N-SNMVIMLIGNKSDL-DAR--REVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
+ V+++ NK DL +A E+ + G R T A + E
Sbjct: 98 ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 53.8 bits (130), Expect = 4e-09
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ-- 165
T++ + KL IWD GQ++ RS R+Y+ G + V D R+ ++D ++
Sbjct: 56 TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ-------RMQDCQREL 108
Query: 166 ------HSNSNMVIMLIGNKSDL-DAR--REVKKEEGEVFAREHGLVFMETSAKLATNVE 216
+ +++ NK DL A +++ R H SA ++
Sbjct: 109 QSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168
Query: 217 EAF 219
Sbjct: 169 PGI 171
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 53.3 bits (129), Expect = 5e-09
Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ-- 165
I + +++WD GQ FRS+ Y RG + + + D +E +E ++
Sbjct: 61 KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE-------KIEASKNEL 113
Query: 166 ------HSNSNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
+ ++++GNK DL +E+ ++ ++ + S K N++
Sbjct: 114 HNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNID 173
Query: 217 EAF 219
Sbjct: 174 ITL 176
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 53.0 bits (128), Expect = 6e-09
Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 4/116 (3%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
I + +WD GQE+ RS +YY ++V D T RE + L H
Sbjct: 54 EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE 113
Query: 168 N-SNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
+ +++ NK D+ E+ + ++H A + +
Sbjct: 114 DLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 169
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 52.3 bits (126), Expect = 1e-08
Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 4/116 (3%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
I + +WD GQE+ RS +YY ++V D T RE + L H
Sbjct: 59 EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE 118
Query: 168 N-SNMVIMLIGNKSDL-DAR--REVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
+ +++ NK D+ + E+ + ++H A + +
Sbjct: 119 DLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 52.3 bits (126), Expect = 1e-08
Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ-- 165
T+ K +KL +WD GQ + R R YY A + V D T ++ + A +
Sbjct: 56 TLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD-------RMSTASKEL 108
Query: 166 ------HSNSNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
+ +++ NK D + EV KE V ++ + +SA +
Sbjct: 109 HLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168
Query: 217 EAF 219
E
Sbjct: 169 EGL 171
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 51.4 bits (124), Expect = 2e-08
Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ-- 165
++ + KL +WD GQ R RSY+ + V D R+ E+ Q
Sbjct: 54 SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRK-------RFEETGQEL 106
Query: 166 ------HSNSNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
S + +++ NK DL E+ + R+ SA V+
Sbjct: 107 TELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166
Query: 217 EAF 219
+
Sbjct: 167 DGM 169
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 50.7 bits (121), Expect = 1e-07
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ-- 165
T++ K I +WD GQ+ R + R Y++ G + V D RE + +AR+
Sbjct: 203 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE-------RVNEAREEL 255
Query: 166 ------HSNSNMVIMLIGNKSDL 182
+ V+++ NK DL
Sbjct: 256 MRMLAEDELRDAVLLVFANKQDL 278
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 50.7 bits (121), Expect = 1e-07
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ-- 165
T+ K +K +WD GQ+ R + R YY G G + V D R+ +++ARQ
Sbjct: 360 TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD-------RIDEARQEL 412
Query: 166 ------HSNSNMVIMLIGNKSDL 182
+ +I++ NK DL
Sbjct: 413 HRIINDREMRDAIILIFANKQDL 435
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 49.5 bits (119), Expect = 1e-07
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 15/83 (18%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ-- 165
+ IK +D G R + + Y+ G + + D E ++AR
Sbjct: 61 ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE-------RFDEARVEL 113
Query: 166 ------HSNSNMVIMLIGNKSDL 182
++ +++GNK D
Sbjct: 114 DALFNIAELKDVPFVILGNKIDA 136
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 48.0 bits (115), Expect = 4e-07
Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ-- 165
+ + +D G R + ++Y G + + D E L ++++
Sbjct: 63 ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE-------RLLESKEEL 115
Query: 166 ------HSNSNMVIMLIGNKSDL 182
+ +N+ I+++GNK D
Sbjct: 116 DSLMTDETIANVPILILGNKIDR 138
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 46.9 bits (111), Expect = 2e-06
Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 111 GKQIKLQIWDTAGQEAF-----RSITRSYYRGAAGALLVYDITRRETFNHLTTW---LED 162
+ L +WD GQ+ F ++ + V+D+ E + + L+
Sbjct: 49 LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQ 108
Query: 163 ARQHSNSNMVIMLIGNKSDL---DARREVKKE 191
R++ + + I ++ +K DL D R E+ +
Sbjct: 109 LRKY-SPDAKIFVLLHKMDLVQLDKREELFQI 139
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 41.3 bits (97), Expect = 8e-05
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 9/84 (10%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGAL--LVYDI-------TRRETFNHLTT 158
D + + D G R Y + A + L++ + T L
Sbjct: 85 AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVD 144
Query: 159 WLEDARQHSNSNMVIMLIGNKSDL 182
L + + I++ NKS+L
Sbjct: 145 ILSITESSCENGIDILIACNKSEL 168
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 40.9 bits (96), Expect = 1e-04
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 9/84 (10%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGAL--LVYDI-------TRRETFNHLTT 158
D + + D G R Y + A + L++ + T L
Sbjct: 49 AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVD 108
Query: 159 WLEDARQHSNSNMVIMLIGNKSDL 182
L + + I++ NKS+L
Sbjct: 109 ILSITESSCENGIDILIACNKSEL 132
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 41.0 bits (97), Expect = 2e-04
Identities = 22/150 (14%), Positives = 43/150 (28%), Gaps = 29/150 (19%)
Query: 107 ITIDGKQIKLQIWDTAG-------------QEAFRSITRSYYRGAAGALLVYDITRRETF 153
D ++ DTAG + + + A L + D+
Sbjct: 276 FIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAE-----ADLILYLLDLGTERLD 328
Query: 154 NHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT 213
+ LT E H + + + NK D A + + SA
Sbjct: 329 DELTEIRELKAAHPAAKFLT--VANKLDRAANADALIRAIADGTGTEVI---GISALNGD 383
Query: 214 NV---EEAFIDTAKEIYEKIQEGVFDITNE 240
+ ++ D K + + + V +T+
Sbjct: 384 GIDTLKQHMGDLVKNLDKLHEASVL-VTSL 412
Score = 27.9 bits (63), Expect = 3.6
Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 7/71 (9%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNV---EEAFIDTAKEIYEK 59
+ + NK D A + + SA + ++ D K + +
Sbjct: 346 FLTVANKLDRAANADALIRAIADGTGTEVI---GISALNGDGIDTLKQHMGDLVKNLDKL 402
Query: 60 IQEGVFDITNE 70
+ V +T+
Sbjct: 403 HEASVL-VTSL 412
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 5e-04
Identities = 37/245 (15%), Positives = 78/245 (31%), Gaps = 66/245 (26%)
Query: 9 KSDLDARREVKKEEGEVFA-REHGLVFMETSAKLATN-VEEAFIDTAKEIYEKIQEGVFD 66
+ D + +V+ + + E + M A T + + +E+ +K E V
Sbjct: 30 VDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88
Query: 67 ITNE--ANGIKIGPQHSPNNPSLPSGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQ 124
I + + I + PS+ + +E R+
Sbjct: 89 INYKFLMSPI----KTEQRQPSMMTRMY-------IEQRDRLYN--------------DN 123
Query: 125 EAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVI--ML-IGNKSD 181
+ F Y+++R + + L L + R N++I +L G K+
Sbjct: 124 QVFAK---------------YNVSRLQPYLKLRQALLELR--PAKNVLIDGVLGSG-KTW 165
Query: 182 L--DARREVKKE---EGEVF------AREHGLVFMETSAKLATNVEEAF---IDTAKEIY 227
+ D K + + ++F V +E KL ++ + D + I
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 228 EKIQE 232
+I
Sbjct: 225 LRIHS 229
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 36.8 bits (86), Expect = 0.002
Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 28/124 (22%)
Query: 107 ITIDGKQIKLQIWDTAG-------------QEAFRSITRSYYRGAAGALLVYDITRRETF 153
I IDG + L I DTAG + A++ I + A L + D T +
Sbjct: 47 IHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIEQ-----ADRVLFMVDGTTTDAV 99
Query: 154 NHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT 213
+ W E + + ++ NK+D+ E G + SA+
Sbjct: 100 DPAEIWPEFIARLPAKLPIT-VVRNKADITGETLGMSEVN-------GHALIRLSARTGE 151
Query: 214 NVEE 217
V+
Sbjct: 152 GVDV 155
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 36.3 bits (84), Expect = 0.005
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 112 KQIKLQIWDTAGQEAFR-SITRSYYRGAAGALLVYDIT-----RRETFNHLTTWLEDARQ 165
+ L + D G E+ R + + A + V D ++ L L D+
Sbjct: 52 RGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMA 111
Query: 166 HSNSNMVIMLIGNKSDL 182
NS +++ NK D+
Sbjct: 112 LKNS-PSLLIACNKQDI 127
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.005
Identities = 18/130 (13%), Positives = 46/130 (35%), Gaps = 28/130 (21%)
Query: 115 KLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIM 174
KL + + + ++Y A ++ R + + + ++
Sbjct: 107 KLLQENDTTLVKTKELIKNYIT----ARIM--AKRPFDKKSNSALFRAVGEGNAQ---LV 157
Query: 175 LI----GNKSD-LDARREVKKEEGEVFAREHGLV--FMETSAKLATNVEEAFIDTAKEIY 227
I GN D + E++ +++ H LV ++ SA+ + + +D K ++
Sbjct: 158 AIFGGQGNTDDYFE---ELR----DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK-VF 209
Query: 228 EKIQEGVFDI 237
+ +I
Sbjct: 210 TQ----GLNI 215
Score = 36.2 bits (83), Expect = 0.009
Identities = 42/209 (20%), Positives = 65/209 (31%), Gaps = 73/209 (34%)
Query: 54 KEIYEK---IQEGVFD----ITNEANGIKIGPQHSPNNPSLPSGSSGSSSGGGV-EFGAR 105
++Y+ Q+ V++ + G I NNP + G G + E +
Sbjct: 1633 MDLYKTSKAAQD-VWNRADNHFKDTYGFSI-LDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 106 MI---TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED 162
MI +DGK +I+ E S T +R G L T
Sbjct: 1691 MIFETIVDGKLKTEKIFKEIN-EHSTSYT---FRSEKGLL------------SAT----- 1729
Query: 163 ARQHSNSNMVIMLIGNKSDLDARREVKKEEG-----EVFAREH--GLVFMETSAKLATNV 215
+ + L+ A E K +G FA H G E +A LA+
Sbjct: 1730 ----QFTQPALTLMEK-----AAFEDLKSKGLIPADATFA-GHSLG----EYAA-LAS-- 1772
Query: 216 EEAFIDTAKEIYEKIQEGVFDITNEVDLV 244
A V I + V++V
Sbjct: 1773 ------LA---------DVMSIESLVEVV 1786
Score = 31.6 bits (71), Expect = 0.27
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 28/110 (25%)
Query: 78 PQHSP-NNPSLPSGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFR----SITR 132
P HS P+ + + ++ + K I++ ++DT R SI+
Sbjct: 426 PFHSHLLVPASDLINK--------DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 133 SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDL 182
+V I R W E Q ++++ G S L
Sbjct: 478 R---------IVDCII-RLPVK----W-ETTTQFKATHILDFGPGGASGL 512
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 33.6 bits (78), Expect = 0.055
Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 36/151 (23%)
Query: 107 ITIDGKQIKLQIWDTAG-------------QEAFRSITRSYYRGAAGALLVYDITRRETF 153
+ + G I +Q+ DTAG + + ++ A LL D T
Sbjct: 267 LVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAANT-----ADLVLLTIDAATGWT- 318
Query: 154 NHLTTWLEDAR-QHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLA 212
D + ++L+ NK DL K+ + E+ + T+A
Sbjct: 319 ------TGDQEIYEQVKHRPLILVMNKIDLVE----KQLITSLEYPENITQIVHTAAAQK 368
Query: 213 TNV---EEAFIDTAKEIYEKIQEGVFDITNE 240
+ E A ++ + + + N+
Sbjct: 369 QGIDSLETAILEIVQTGKVQAADMDL-AINQ 398
Score = 28.2 bits (64), Expect = 2.9
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNV---EEAFIDTAKEIYEK 59
++L+ NK DL K+ + E+ + T+A + E A ++ + +
Sbjct: 333 LILVMNKIDLVE----KQLITSLEYPENITQIVHTAAAQKQGIDSLETAILEIVQTGKVQ 388
Query: 60 IQEGVFDITNE 70
+ N+
Sbjct: 389 AADMDL-AINQ 398
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.11
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 13/37 (35%)
Query: 15 RREVKKEEG--EVFAREHGLVFMETSA-KLATN--VE 46
++ +KK + +++A + SA LA +E
Sbjct: 19 KQALKKLQASLKLYADD--------SAPALAIKATME 47
Score = 31.8 bits (71), Expect = 0.11
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 13/37 (35%)
Query: 185 RREVKKEEG--EVFAREHGLVFMETSA-KLATN--VE 216
++ +KK + +++A + SA LA +E
Sbjct: 19 KQALKKLQASLKLYADD--------SAPALAIKATME 47
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 32.1 bits (74), Expect = 0.15
Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 23/145 (15%)
Query: 107 ITIDGKQIKLQIWDTAG--QEAFRSI-------TRSYYRGAAGALLVYDITRRETFNHLT 157
I I G I +I DTAG E + T A L V D + L
Sbjct: 286 IVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASS-----PLD 338
Query: 158 TWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE- 216
+ + + ++ NK D+ + ++ + ++ H + + SA +E
Sbjct: 339 EEDRKILERIKNKRYL-VVINKVDVVEKINEEEIKNKLGTDRHMV---KISALKGEGLEK 394
Query: 217 -EAFIDTAKEIYEKIQEGVFDITNE 240
E I + + ITN
Sbjct: 395 LEESIYRETQEIFERGSDSL-ITNL 418
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 31.8 bits (72), Expect = 0.20
Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 13/121 (10%)
Query: 125 EAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-- 182
+ F S+ A + + DI F+ +++ + + N ++ L+GNK+DL
Sbjct: 59 DDFLSMLHRIGESKALVVNIVDI-----FDFNGSFIPGLPRFAADNPIL-LVGNKADLLP 112
Query: 183 -DARREVKKEEGEVFAREHGLVFME---TSAKLATNVEEAFIDTAKEIYEKIQEGVFDIT 238
+ A E GL ++ SA + + ++ E V T
Sbjct: 113 RSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAK-VMEAINRYREGGDVYVVGCT 171
Query: 239 N 239
N
Sbjct: 172 N 172
Score = 27.2 bits (60), Expect = 5.5
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 3 IMLIGNKSDL---DARREVKKEEGEVFAREHGLVFME---TSAKLATNVEEAFIDTAKEI 56
I+L+GNK+DL + A E GL ++ SA + + ++
Sbjct: 101 ILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAK-VMEAINRY 159
Query: 57 YEKIQEGVFDITN 69
E V TN
Sbjct: 160 REGGDVYVVGCTN 172
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 30.7 bits (69), Expect = 0.44
Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 13/122 (10%)
Query: 124 QEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDL- 182
+ F I + A + + DI F+ +WL + +N V+ L+GNK+DL
Sbjct: 56 DDDFLRILNGIGKSDALVVKIVDI-----FDFNGSWLPGLHRFVGNNKVL-LVGNKADLI 109
Query: 183 --DARREVKKEEGEVFAREHGLVFME---TSAKLATNVEEAFIDTAKEIYEKIQEGVFDI 237
+ + K A++ GL + SA + E D + V
Sbjct: 110 PKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAE-LADAIEYYRGGKDVYVVGC 168
Query: 238 TN 239
TN
Sbjct: 169 TN 170
Score = 28.4 bits (63), Expect = 2.2
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 3 IMLIGNKSDL---DARREVKKEEGEVFAREHGLVFME---TSAKLATNVEEAFIDTAKEI 56
++L+GNK+DL + + K A++ GL + SA + E D +
Sbjct: 99 VLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAE-LADAIEYY 157
Query: 57 YEKIQEGVFDITN 69
V TN
Sbjct: 158 RGGKDVYVVGCTN 170
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.0 bits (67), Expect = 0.56
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 11/35 (31%)
Query: 21 EEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 55
EG+V GLV + + +DT E
Sbjct: 39 SEGDVVCALCGLV-----------LSDKLVDTRSE 62
Score = 30.0 bits (67), Expect = 0.56
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 11/35 (31%)
Query: 191 EEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 225
EG+V GLV + + +DT E
Sbjct: 39 SEGDVVCALCGLV-----------LSDKLVDTRSE 62
>3n06_A Prolactin, PRL; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3nce_A 3mzg_A 3ncc_A 2q98_A 3d48_P 3ncb_A 3n0p_A 3ncf_A
1n9d_A 1rw5_A 3npz_A 3ew3_A
Length = 186
Score = 28.9 bits (64), Expect = 1.2
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 27 AREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ---EGVFDITNEANGIKIGPQHSPN 83
+ L + T + EA + A EI E+ + E + I ++ + + P
Sbjct: 77 SWNEPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLERMELIVSQVHPETKENEIYPV 136
Query: 84 NPSLPSGSS 92
LPS
Sbjct: 137 WSGLPSLQM 145
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 28.1 bits (62), Expect = 2.5
Identities = 8/73 (10%), Positives = 21/73 (28%), Gaps = 7/73 (9%)
Query: 119 WDTAGQEAFRSITRSYYRGAAGALLVYD------ITRRETFNHLTTWLEDARQHSNSNMV 172
+ + + G + V + ++ F+H+ + A S ++
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL 166
Query: 173 IMLIGNKSDLDAR 185
+ L R
Sbjct: 167 V-LSCISQGDVKR 178
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A*
2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Length = 934
Score = 27.7 bits (62), Expect = 4.3
Identities = 6/76 (7%), Positives = 22/76 (28%), Gaps = 11/76 (14%)
Query: 112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVY-DITRRETFNHLTTWLEDARQHSNSN 170
+ +K + + + + A++ + ++ ++ S
Sbjct: 243 RLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFE----LTTFDFSQ 298
Query: 171 MVIMLIGNKSDLDARR 186
+ + D+ A R
Sbjct: 299 YMKL------DIAAVR 308
>2dbo_A D-tyrosyl-tRNA(Tyr) deacylase; D-amino acid, D-tyrosine, structural
genomi NPPSFA, national project on protein structural
and function analyses; 2.76A {Aquifex aeolicus}
Length = 148
Score = 26.2 bits (59), Expect = 6.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 47 EAFIDTAKEIYEKIQEGVF 65
E F+D KE K++ G+F
Sbjct: 107 EKFVDKIKESGLKVETGIF 125
Score = 26.2 bits (59), Expect = 6.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 217 EAFIDTAKEIYEKIQEGVF 235
E F+D KE K++ G+F
Sbjct: 107 EKFVDKIKESGLKVETGIF 125
>1rp3_B Anti sigma factor FLGM; transcription; 2.30A {Aquifex aeolicus}
SCOP: a.137.11.1 PDB: 1sc5_B
Length = 88
Score = 25.6 bits (55), Expect = 6.6
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 5 LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATN--VEEAFIDTAKEIYEKIQE 62
LIG + + R+ +++E E + + + +L+ N E+ KE+ EKI++
Sbjct: 10 LIGLLLETEKRKNTEQKESGTNKIEDKVTLSKIAQELSKNDVEEKDLEKKVKELKEKIEK 69
Query: 63 GVFDITNE 70
G +++++E
Sbjct: 70 GEYEVSDE 77
Score = 25.6 bits (55), Expect = 6.6
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 175 LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATN--VEEAFIDTAKEIYEKIQE 232
LIG + + R+ +++E E + + + +L+ N E+ KE+ EKI++
Sbjct: 10 LIGLLLETEKRKNTEQKESGTNKIEDKVTLSKIAQELSKNDVEEKDLEKKVKELKEKIEK 69
Query: 233 GVFDITNE 240
G +++++E
Sbjct: 70 GEYEVSDE 77
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 26.7 bits (59), Expect = 7.3
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 169 SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEE---AFIDTAKE 225
++ +++ NK D+ +K+ E V +E GL ++ SA T ++ I T +
Sbjct: 279 KDLPFLVVINKIDVADEENIKRLEKFV--KEKGLNPIKISALKGTGIDLVKEEIIKTLRP 336
Query: 226 IYEKIQE 232
+ EK+
Sbjct: 337 LAEKVAR 343
Score = 26.7 bits (59), Expect = 8.2
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 3 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEE---AFIDTAKEIYEK 59
+++ NK D+ +K+ E V +E GL ++ SA T ++ I T + + EK
Sbjct: 283 FLVVINKIDVADEENIKRLEKFV--KEKGLNPIKISALKGTGIDLVKEEIIKTLRPLAEK 340
Query: 60 IQE 62
+
Sbjct: 341 VAR 343
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG,
GFT structural G PSI-2, protein structure initiative;
NMR {Artificial gene}
Length = 110
Score = 25.9 bits (56), Expect = 7.7
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 151 ETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKE 191
+T + L +LE+ R+ S + V++L+ N +LD +E+ ++
Sbjct: 33 KTEDELKKYLEEFRKESQNIKVLILVSNDEELDKAKELAQK 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.364
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,774,781
Number of extensions: 234365
Number of successful extensions: 991
Number of sequences better than 10.0: 1
Number of HSP's gapped: 830
Number of HSP's successfully gapped: 242
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.2 bits)