BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13391
(146 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3MHE4|MSH2_BOVIN DNA mismatch repair protein Msh2 OS=Bos taurus GN=MSH2 PE=2 SV=1
Length = 934
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 83/134 (61%), Gaps = 1/134 (0%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+KQPL D + I ER V V + E R NL E LR PD+ LA + R+ A L+DCY
Sbjct: 346 IKQPLMDKNRIEERLNLVEAFVEDAELRQNLQEDLLRRFPDLNRLAKKFQRQAANLQDCY 405
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
R+Y+G++QLP +I LE +A L ++ L L +D +KFQEMIETT+D+++ +
Sbjct: 406 RLYQGINQLPNVIQALEKYEGKHQALFLAVFVTPLIDLRSDFSKFQEMIETTLDMDQVEN 465
Query: 121 EREFFIRPSFDEDL 134
EF ++PSFD +L
Sbjct: 466 -HEFLVKPSFDPNL 478
>sp|P43247|MSH2_MOUSE DNA mismatch repair protein Msh2 OS=Mus musculus GN=Msh2 PE=2 SV=1
Length = 935
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 84/134 (62%), Gaps = 1/134 (0%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+KQPL D + I ER V V ++E R +L E LR PD+ LA + R+ A L+DCY
Sbjct: 346 IKQPLMDRNRIEERLNLVEAFVEDSELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCY 405
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
R+Y+G++QLP +I LE +A L ++ L L +D +KFQEMIETT+D+++ +
Sbjct: 406 RLYQGINQLPSVIQALEKYEGRHQALLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQVEN 465
Query: 121 EREFFIRPSFDEDL 134
EF ++PSFD +L
Sbjct: 466 -HEFLVKPSFDPNL 478
>sp|Q5XXB5|MSH2_CHLAE DNA mismatch repair protein Msh2 OS=Chlorocebus aethiops GN=MSH2
PE=2 SV=1
Length = 933
Score = 106 bits (264), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 81/134 (60%), Gaps = 1/134 (0%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+KQPL D + I ER V V + E R L E LR PD+ LA + R+ A L+DCY
Sbjct: 346 IKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCY 405
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
R+Y+G++QLP +I LE + L ++ L L +D +KFQEMIETT+D+++ +
Sbjct: 406 RLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQVEN 465
Query: 121 EREFFIRPSFDEDL 134
EF ++PSFD +L
Sbjct: 466 -HEFLVKPSFDPNL 478
>sp|P43246|MSH2_HUMAN DNA mismatch repair protein Msh2 OS=Homo sapiens GN=MSH2 PE=1 SV=1
Length = 934
Score = 106 bits (264), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 81/134 (60%), Gaps = 1/134 (0%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+KQPL D + I ER V V + E R L E LR PD+ LA + R+ A L+DCY
Sbjct: 346 IKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCY 405
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
R+Y+G++QLP +I LE + L ++ L L +D +KFQEMIETT+D+++ +
Sbjct: 406 RLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQVEN 465
Query: 121 EREFFIRPSFDEDL 134
EF ++PSFD +L
Sbjct: 466 -HEFLVKPSFDPNL 478
>sp|P54275|MSH2_RAT DNA mismatch repair protein Msh2 OS=Rattus norvegicus GN=Msh2 PE=2
SV=1
Length = 933
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 81/134 (60%), Gaps = 1/134 (0%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+KQPL D + I ER V V ++E R L E LR PD+ LA + R+ A L+DCY
Sbjct: 346 IKQPLMDKNRIEERLNLVEAFVEDSELRRALQEDLLRRFPDLNRLAKKFQRQAANLQDCY 405
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
R+Y+GV QLP +I LE +A L ++ L L +D +KFQE IETT+D+++ +
Sbjct: 406 RLYQGVKQLPNVIQALEKYQGRHQALLLAVFVTPLTDLRSDFSKFQEKIETTLDMDQVEN 465
Query: 121 EREFFIRPSFDEDL 134
EF ++PSFD +L
Sbjct: 466 -HEFLVKPSFDPNL 478
>sp|O13396|MSH2_NEUCR DNA mismatch repair protein msh-2 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=msh-2 PE=3 SV=1
Length = 937
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 80/136 (58%), Gaps = 2/136 (1%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+KQPL + + I +R V N+TE R ++ E LR +PD+ L+ R R KA L+D
Sbjct: 335 LKQPLMNAEEIEKRQQLVEAFANDTELRQSMQEEHLRSIPDLYRLSKRFQRGKATLEDVV 394
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSS-LQSLSNDLAKFQEMIETTIDIERFH 119
R Y+ V +LP I LE ++ L+ + ++ L+ LS+ L K QEM+ETT+D++
Sbjct: 395 RAYQVVIRLPGFIGTLEGVMDEAYRDPLDEVYTNKLRELSDSLVKLQEMVETTVDLDALD 454
Query: 120 SEREFFIRPSFDEDLQ 135
+ EF I+P FD+ L+
Sbjct: 455 N-HEFIIKPEFDDSLR 469
>sp|O74773|MSH2_SCHPO DNA mismatch repair protein msh2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=msh2 PE=3 SV=2
Length = 982
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Query: 3 QPLKDLDAIVERHAAVNILVNNTEAR--MNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
QPL D +I RH V+ LV + EAR + ++ LR +PD+ L R+ R A L+D
Sbjct: 362 QPLLDAKSIERRHDLVSALVEDAEARQLLLDDDHLLRSIPDIPKLCRRLTRGSASLEDVV 421
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
R+Y+ LPK++++L+SL + + L + +L K E++ETTID+E S
Sbjct: 422 RIYQMAKALPKIVTVLDSLTSEHKDLVDKVYTNVLNNHCKNLEKLIELVETTIDLEALDS 481
Query: 121 EREFFIRPSFDEDL 134
++ IR FDE+L
Sbjct: 482 -HQYIIRAEFDEEL 494
>sp|P25847|MSH2_YEAST DNA mismatch repair protein MSH2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MSH2 PE=1 SV=2
Length = 964
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 91/151 (60%), Gaps = 9/151 (5%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+KQPL ++D I +RH V+ L++ E R L L +PD++ L ++ K+ L+D
Sbjct: 358 LKQPLTNIDEINKRHDLVDYLIDQIELRQMLTSEYLPMIPDIRRLTKKL-NKRGNLEDVL 416
Query: 61 RVYEGVSQLPKLISILESLVQNVEASN-LNTILSS--LQSLSND---LAKFQEMIETTID 114
++Y+ ++P+++ + S +++ + +N ++ S L LS+ L+KF+EM+ETT+D
Sbjct: 417 KIYQFSKRIPEIVQVFTSFLEDDSPTEPVNELVRSVWLAPLSHHVEPLSKFEEMVETTVD 476
Query: 115 IERFHSEREFFIRPSFDEDLQGKAIKSNLKS 145
++ + EF I+ F+E+L GK I+S L +
Sbjct: 477 LDAYEENNEFMIKVEFNEEL-GK-IRSKLDT 505
>sp|Q553L4|MSH2_DICDI DNA mismatch repair protein Msh2 OS=Dictyostelium discoideum
GN=msh2 PE=3 SV=1
Length = 937
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 82/145 (56%), Gaps = 6/145 (4%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+KQPL + + I R V N+ E R +L L+ + D+ L+ ++ +KA L+DC
Sbjct: 380 VKQPLLNAEEIEARLNFVEAFYNDLELRQSLRSNDLKKIGDLDRLSKKLHGQKATLEDCV 439
Query: 61 RVYEGVSQLPKLISIL---ESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIER 117
+Y V++LP ++ L S+ Q + N + SL+S+ +D AKF M+E TID++
Sbjct: 440 NLYGIVTRLPVVLQSLNNHSSIHQELIKVNF---IESLESIISDFAKFCAMVEKTIDLDL 496
Query: 118 FHSEREFFIRPSFDEDLQGKAIKSN 142
+ + E+ IR SFDE L+G +K +
Sbjct: 497 ANDKHEYVIRSSFDETLRGIQLKKD 521
>sp|P43248|MSH2_DROME DNA mismatch repair protein spellchecker 1 OS=Drosophila
melanogaster GN=spel1 PE=3 SV=4
Length = 917
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 73/135 (54%), Gaps = 6/135 (4%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+KQPL+ + + +RH V L+ + + L L+ +PD+ L ++ R+KA L+D +
Sbjct: 347 VKQPLRSRNILNDRHNIVQCLLESPDTMETLSLDYLKRIPDILMLTKKLMRRKANLQDLF 406
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
R+Y+ + + PK++ +L L + S I + +S DL ++M+E +D E
Sbjct: 407 RIYQVILRTPKILKVLHELDNSTIES---VICAPFKSFLKDLTGLKQMVEQVVDFEAI-- 461
Query: 121 ER-EFFIRPSFDEDL 134
ER E+ ++ SFD L
Sbjct: 462 ERGEYLVKASFDSRL 476
>sp|Q9HSL6|MUTS2_HALSA DNA mismatch repair protein MutS 2 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=mutS2 PE=3
SV=1
Length = 863
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+++PL D DAI RH AV LV + +R LHE+ LR + D++ L R+ R +A +D
Sbjct: 322 LRRPLVDSDAIAARHDAVGELVADPLSREELHEH-LRDVYDIERLVSRVSRGRANARDLR 380
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSL 98
+ + ++ +P+ + L+ + +A L ++ +L L
Sbjct: 381 ALADTLAVVPE----VRGLLADADARKLQSLREALDDL 414
>sp|B0R2T7|MUTS2_HALS3 DNA mismatch repair protein MutS 2 OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=mutS2 PE=3 SV=1
Length = 863
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+++PL D DAI RH AV LV + +R LHE+ LR + D++ L R+ R +A +D
Sbjct: 322 LRRPLVDSDAIAARHDAVGELVADPLSREELHEH-LRDVYDIERLVSRVSRGRANARDLR 380
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSL 98
+ + ++ +P+ + L+ + +A L ++ +L L
Sbjct: 381 ALADTLAVVPE----VRGLLADADARKLQSLREALDDL 414
>sp|Q46IE5|MUTS_PROMT DNA mismatch repair protein MutS OS=Prochlorococcus marinus (strain
NATL2A) GN=mutS PE=3 SV=1
Length = 926
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+++P KD++AI R + LV ++ R N+ + LR + D++ L+ R G ++AG +D
Sbjct: 410 IEEPTKDVNAIKNRQNIIGFLVKSSTLRKNIRK-TLRAMGDLERLSGRAGAQQAGARDLV 468
Query: 61 RVYEGVSQLP 70
+ EG+++LP
Sbjct: 469 AIAEGINRLP 478
>sp|Q5M6I1|MUTS_STRT2 DNA mismatch repair protein MutS OS=Streptococcus thermophilus
(strain ATCC BAA-250 / LMG 18311) GN=mutS PE=3 SV=1
Length = 852
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL + +I+ER + + ++N R +L E +L+G+ D++ LA R+ KA KD
Sbjct: 295 IDRPLVNQASIIERQNIIQVFLDNFFERSDLTE-SLKGVYDIERLASRVSFGKANPKDLI 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ ++Q+P + +ILES N + + LQ L + L + + +I + ID + +
Sbjct: 354 QLGHTLAQVPVIKAILESF-------NDDALSGLLQEL-DALPELESLIRSAIDPDAPAT 405
Query: 121 ERE-FFIRPSFDEDL 134
E IR FDE L
Sbjct: 406 ITEGGIIRDGFDETL 420
>sp|Q5M1Z0|MUTS_STRT1 DNA mismatch repair protein MutS OS=Streptococcus thermophilus
(strain CNRZ 1066) GN=mutS PE=3 SV=1
Length = 852
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL + +I+ER + + ++N R +L E +L+G+ D++ LA R+ KA KD
Sbjct: 295 IDRPLVNQASIIERQNIIQVFLDNFFERSDLAE-SLKGVYDIERLASRVSFGKANPKDLI 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ ++Q+P + +ILES N + + LQ L + L + + +I + ID + +
Sbjct: 354 QLGHTLAQVPVIKAILESF-------NDDALSGLLQEL-DALPELESLIRSAIDPDAPAT 405
Query: 121 ERE-FFIRPSFDEDL 134
E IR FDE L
Sbjct: 406 ITEGGIIRDGFDETL 420
>sp|Q03MY4|MUTS_STRTD DNA mismatch repair protein MutS OS=Streptococcus thermophilus
(strain ATCC BAA-491 / LMD-9) GN=mutS PE=3 SV=1
Length = 852
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL + +I+ER + + ++N R +L E +L+G+ D++ LA R+ KA KD
Sbjct: 295 IDRPLVNQASIIERQNIIQVFLDNFFERSDLTE-SLKGVYDIERLASRVSFGKANPKDLI 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ ++Q+P + +ILES N + + LQ L + L + + +I + ID + +
Sbjct: 354 QLGHTLAQVPIIKAILESF-------NDDALSGLLQEL-DALPELESLIRSAIDPDAPAT 405
Query: 121 ERE-FFIRPSFDEDL 134
E IR FDE L
Sbjct: 406 ITEGGIIRDGFDETL 420
>sp|Q3AQZ8|MUTS_CHLCH DNA mismatch repair protein MutS OS=Chlorobium chlorochromatii
(strain CaD3) GN=mutS PE=3 SV=1
Length = 873
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 11/148 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+++PLK L I ERH AV LV N R ++ E L + D++ RI + ++
Sbjct: 320 LQRPLKKLTNIQERHNAVEELVENRTLRESVAE-QLAAINDLERSLARIATLRTIPREVR 378
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ ++ +P L++L+ +V A L + ++LQ L K E IE+ ID + +
Sbjct: 379 QLGISLAAIPT----LQALLSDVTAPRLQALTAALQPLP----KLAEQIESAIDPDAGAT 430
Query: 121 ERE-FFIRPSFDEDLQG-KAIKSNLKSR 146
R+ +IR ++E+L ++I S K R
Sbjct: 431 MRDGGYIRAGYNEELDDLRSIASTAKDR 458
>sp|Q8NZ24|MUTS_STRP8 DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M18 (strain MGAS8232) GN=mutS PE=3 SV=1
Length = 851
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL +AI+ER + + +N R +L +L+G+ D++ L+ R+ KA KD
Sbjct: 295 IDRPLVSKEAILERQEIIQVFLNAFIERTDLSN-SLKGVYDIERLSSRVSFGKANPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ ++Q+P + +ILES +N I + L + + +I T ID + +
Sbjct: 354 QLGHTLAQVPYIKAILESFNSPCVDKLVNDI--------DSLPELEYLIRTAIDTDAPAT 405
Query: 121 EREF-FIRPSFDEDL 134
E IR FDE L
Sbjct: 406 ISEGSIIRTGFDERL 420
>sp|A2C5A9|MUTS_PROM1 DNA mismatch repair protein MutS OS=Prochlorococcus marinus (strain
NATL1A) GN=mutS PE=3 SV=1
Length = 926
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+++PL ++ +I R + +LV ++ R N+ + LR + D++ L+ R G ++AG +D
Sbjct: 410 LEEPLTEIYSIQSRQKIIGLLVESSSLRKNIRKI-LRAMGDLERLSGRAGAQQAGARDLI 468
Query: 61 RVYEGVSQLP 70
+ EG+++LP
Sbjct: 469 AIAEGINRLP 478
>sp|A2RGX2|MUTS_STRPG DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M5 (strain Manfredo) GN=mutS PE=3 SV=1
Length = 851
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL +AI+ER + + +N R +L +L+G+ D++ L+ R+ KA KD
Sbjct: 295 IDRPLVSKEAILERQEIIQVFLNAFIERTDLSN-SLKGVYDIERLSSRVSFGKANPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ ++Q+P + +ILES ++ ++ +++ + SL + + +I T ID + +
Sbjct: 354 QLGHTLAQVPYIKAILESF----DSPCVDKLVNDIDSLP----ELEYLIRTAIDPDAPAT 405
Query: 121 EREF-FIRPSFDEDL 134
E IR FDE L
Sbjct: 406 ISEGSIIRTGFDERL 420
>sp|Q5X9F3|MUTS_STRP6 DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M6 (strain ATCC BAA-946 / MGAS10394) GN=mutS PE=3 SV=1
Length = 851
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL +AI+ER + + +N R +L +L+G+ D++ L+ R+ KA KD
Sbjct: 295 IDRPLVSKEAILERQEIIQVFLNAFIERTDLSN-SLKGVYDIERLSSRVSFGKANPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ ++Q+P + +ILES ++ ++ +++ + SL + + +I T ID + +
Sbjct: 354 QLGHTLAQVPYIKAILESF----DSPCVDKLVNDIDSLP----ELEYLIRTAIDPDAPAT 405
Query: 121 EREF-FIRPSFDEDL 134
E IR FDE L
Sbjct: 406 ISEGSIIRTGFDERL 420
>sp|Q48QT6|MUTS_STRPM DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M28 (strain MGAS6180) GN=mutS PE=3 SV=1
Length = 851
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL +AI+ER + + +N R +L +L+G+ D++ L+ R+ KA KD
Sbjct: 295 IDRPLVSKEAILERQEIIQVFLNAFIERTDLSN-SLKGVYDIERLSSRVSFGKANPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ ++Q+P + +ILES ++ ++ +++ + SL + + +I T ID + +
Sbjct: 354 QLGHTLAQVPYIKAILESF----DSPCVDKLVNDIDSLP----ELEYLIRTAIDPDAPAT 405
Query: 121 EREF-FIRPSFDEDL 134
E IR FDE L
Sbjct: 406 ISEGSIIRTGFDERL 420
>sp|Q1J489|MUTS_STRPF DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M4 (strain MGAS10750) GN=mutS PE=3 SV=1
Length = 851
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL +AI+ER + + +N R +L +L+G+ D++ L+ R+ KA KD
Sbjct: 295 IDRPLVSKEAILERQEIIQVFLNAFIERTDLSN-SLKGVYDIERLSSRVSFGKANPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ ++Q+P + +ILES ++ ++ +++ + SL + + +I T ID + +
Sbjct: 354 QLGHTLAQVPYIKAILESF----NSAYVDKLVNDIDSLP----ELEYLIRTAIDPDAPAT 405
Query: 121 EREF-FIRPSFDEDL 134
E IR FDE L
Sbjct: 406 ISEGSIIRNGFDERL 420
>sp|B5XJ75|MUTS_STRPZ DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M49 (strain NZ131) GN=mutS PE=3 SV=1
Length = 851
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL +AI+ER + + +N R +L +L+G+ D++ L+ R+ KA KD
Sbjct: 295 IDRPLVSKEAILERQEIIQVFLNAFIERTDLSN-SLKGVYDIERLSSRVSFGKANPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ ++Q+P + +ILES ++ ++ +++ + SL + + +I T ID + +
Sbjct: 354 QLGHTLAQVPYIKAILESF----DSPCVDKLVNDIDSLP----ELEYLIRTAIDPDAPAT 405
Query: 121 EREF-FIRPSFDEDL 134
E IR FDE L
Sbjct: 406 ISEGSIIRNGFDERL 420
>sp|O24617|MSH2_ARATH DNA mismatch repair protein MSH2 OS=Arabidopsis thaliana GN=MSH2
PE=1 SV=1
Length = 937
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 71/136 (52%), Gaps = 4/136 (2%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+KQPL DL+ I R V V R +L ++ L+ + D++ L + R++ GL+
Sbjct: 340 LKQPLVDLNEIKTRLDIVQCFVEEAGLRQDLRQH-LKRISDVERLLRSLERRRGGLQHII 398
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSND--LAKFQEMIETTIDIERF 118
++Y+ +LP + + ++ + L L++LS+ L KF +++E ++D+++
Sbjct: 399 KLYQSTIRLPFIKTAMQQYTGEFASLISERYLKKLEALSDQDHLGKFIDLVECSVDLDQL 458
Query: 119 HSEREFFIRPSFDEDL 134
+ E+ I S+D L
Sbjct: 459 EN-GEYMISSSYDTKL 473
>sp|Q99XL8|MUTS_STRP1 DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M1 GN=mutS PE=3 SV=1
Length = 851
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL +AI+ER + + +N R +L +L+G+ D++ L+ R+ KA KD
Sbjct: 295 IDRPLVSKEAILERQEIIQVFLNAFIERTDLSN-SLKGVYDIERLSSRVSFGKANPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ ++Q+P + +ILES ++ ++ +++ + S L + + +I T ID + +
Sbjct: 354 QLGHTLAQVPYIKAILESF----DSPCVDKLVNDIDS----LPELEYLIRTAIDPDAPAT 405
Query: 121 EREF-FIRPSFDEDL 134
E IR FDE L
Sbjct: 406 ISEGSIIRNGFDERL 420
>sp|P0DC61|MUTS_STRPQ DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M3 (strain SSI-1) GN=mutS PE=3 SV=1
Length = 851
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL +AI+ER + + +N R +L +L+G+ D++ L+ R+ KA KD
Sbjct: 295 IDRPLVSKEAILERQEIIQVFLNAFIERTDLSN-SLKGVYDIERLSSRVSFGKANPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ ++Q+P + +ILES ++ ++ +++ + S L + + +I T ID + +
Sbjct: 354 QLGHTLAQVPYIKAILESF----DSPCVDKLVNDIDS----LPELEYLIRTAIDPDAPAT 405
Query: 121 EREF-FIRPSFDEDL 134
E IR FDE L
Sbjct: 406 ISEGSIIRNGFDERL 420
>sp|P0DC60|MUTS_STRP3 DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M3 (strain ATCC BAA-595 / MGAS315) GN=mutS PE=3 SV=1
Length = 851
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL +AI+ER + + +N R +L +L+G+ D++ L+ R+ KA KD
Sbjct: 295 IDRPLVSKEAILERQEIIQVFLNAFIERTDLSN-SLKGVYDIERLSSRVSFGKANPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ ++Q+P + +ILES ++ ++ +++ + S L + + +I T ID + +
Sbjct: 354 QLGHTLAQVPYIKAILESF----DSPCVDKLVNDIDS----LPELEYLIRTAIDPDAPAT 405
Query: 121 EREF-FIRPSFDEDL 134
E IR FDE L
Sbjct: 406 ISEGSIIRNGFDERL 420
>sp|Q1JEH0|MUTS_STRPD DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M2 (strain MGAS10270) GN=mutS PE=3 SV=1
Length = 851
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL +AI+ER + + +N R +L +L+G+ D++ L+ R+ KA KD
Sbjct: 295 IDRPLVSKEAILERQEIIQVFLNAFIERTDLSN-SLKGVYDIERLSSRVSFGKANPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ ++Q+P + +ILES ++ ++ +++ + S L + + +I T ID + +
Sbjct: 354 QLGHTLAQVPYIKAILESF----DSPCVDKLVNDIDS----LPELEYLIRTAIDPDAPAT 405
Query: 121 EREF-FIRPSFDEDL 134
E IR FDE L
Sbjct: 406 ISEGSIIRNGFDERL 420
>sp|Q1JJH0|MUTS_STRPC DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M12 (strain MGAS9429) GN=mutS PE=3 SV=1
Length = 851
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL +AI+ER + + +N R +L +L+G+ D++ L+ R+ KA KD
Sbjct: 295 IDRPLVSKEAILERQEIIQVFLNAFIERTDLSN-SLKGVYDIERLSSRVSFGKANPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ ++Q+P + +ILES ++ ++ +++ + S L + + +I T ID + +
Sbjct: 354 QLGYTLAQVPYIKAILESF----DSPCVDKLVNDIDS----LPELEYLIRTAIDPDAPAT 405
Query: 121 EREF-FIRPSFDEDL 134
E IR FDE L
Sbjct: 406 ISEGSIIRTGFDERL 420
>sp|Q1J9C1|MUTS_STRPB DNA mismatch repair protein MutS OS=Streptococcus pyogenes serotype
M12 (strain MGAS2096) GN=mutS PE=3 SV=1
Length = 851
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL +AI+ER + + +N R +L +L+G+ D++ L+ R+ KA KD
Sbjct: 295 IDRPLVSKEAILERQEIIQVFLNAFIERTDLSN-SLKGVYDIERLSSRVSFGKANPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ ++Q+P + +ILES ++ ++ +++ + S L + + +I T ID + +
Sbjct: 354 QLGYTLAQVPYIKAILESF----DSPCVDKLVNDIDS----LPELEYLIRTAIDPDAPAT 405
Query: 121 EREF-FIRPSFDEDL 134
E IR FDE L
Sbjct: 406 ISEGSIIRTGFDERL 420
>sp|C1CTY2|MUTS_STRZT DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
(strain Taiwan19F-14) GN=mutS PE=3 SV=1
Length = 844
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL D + IV+R V + +++ R +L + +L+G+ D++ LA R+ K KD
Sbjct: 295 IHRPLIDKERIVQRQEVVQVFLDHFFERSDLTD-SLKGVYDIERLASRVSFGKTNPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ +S +P++ +ILE + E L +++ L ++ + + +I I E H
Sbjct: 354 QLATTLSSVPRIRAILEGM----EQPTLAYLIAQLDAIP----ELESLISAAIAPEAPHV 405
Query: 121 ERE-FFIRPSFDEDL 134
+ IR FDE L
Sbjct: 406 ITDGGIIRTGFDETL 420
>sp|B1I9E5|MUTS_STRPI DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
(strain Hungary19A-6) GN=mutS PE=3 SV=1
Length = 844
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL D + IV+R V + +++ R +L + +L+G+ D++ LA R+ K KD
Sbjct: 295 IHRPLIDKERIVQRQEVVQVFLDHFFERSDLTD-SLKGVYDIERLASRVSFGKTNPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ +S +P++ +ILE + E L +++ L ++ + + +I I E H
Sbjct: 354 QLATTLSSVPRIRAILEGM----EQPTLAYLIAQLDAIP----ELESLISAAIAPEAPHV 405
Query: 121 ERE-FFIRPSFDEDL 134
+ IR FDE L
Sbjct: 406 ITDGGIIRTGFDETL 420
>sp|C1CN23|MUTS_STRZP DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
(strain P1031) GN=mutS PE=3 SV=1
Length = 844
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL D + IV+R V + +++ R +L + +L+G+ D++ LA R+ K KD
Sbjct: 295 IHRPLIDKERIVQRQEVVQVFLDHFFERSDLTD-SLKGVYDIERLASRVSFGKTNPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ +S +P++ +ILE + E L +++ L ++ + + +I I E H
Sbjct: 354 QLATTLSSVPRIRAILEGM----EQPTLAYLIAQLDAIP----ELESLISAAIAPEAPHV 405
Query: 121 ERE-FFIRPSFDEDL 134
+ IR FDE L
Sbjct: 406 ITDGGIIRTGFDETL 420
>sp|C1CH06|MUTS_STRZJ DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
(strain JJA) GN=mutS PE=3 SV=1
Length = 844
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL D + IV+R V + +++ R +L + +L+G+ D++ LA R+ K KD
Sbjct: 295 IHRPLIDKERIVQRQEVVQVFLDHFFERSDLTD-SLKGVYDIERLASRVSFGKTNPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ +S +P++ +ILE + E L +++ L ++ + + +I I E H
Sbjct: 354 QLATTLSSVPRIRAILEGM----EQPTLAYLIAQLDAIP----ELESLISAAIAPEAPHV 405
Query: 121 ERE-FFIRPSFDEDL 134
+ IR FDE L
Sbjct: 406 ITDGGIIRTGFDETL 420
>sp|B8ZPK0|MUTS_STRPJ DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
(strain ATCC 700669 / Spain 23F-1) GN=mutS PE=3 SV=1
Length = 844
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL D + IV+R V + +++ R +L + +L+G+ D++ LA R+ K KD
Sbjct: 295 IHRPLIDKERIVQRQEVVQVFLDHFFERSDLTD-SLKGVYDIERLASRVSFGKTNPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ +S +P++ +ILE + E L +++ L ++ + + +I I E H
Sbjct: 354 QLATTLSSVPRIRAILEGM----EQPTLAYLIAQLDAIP----ELESLISAAIAPEAPHV 405
Query: 121 ERE-FFIRPSFDEDL 134
+ IR FDE L
Sbjct: 406 ITDGGIIRTGFDETL 420
>sp|C1CAQ5|MUTS_STRP7 DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
(strain 70585) GN=mutS PE=3 SV=1
Length = 844
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL D + IV+R V + +++ R +L + +L+G+ D++ LA R+ K KD
Sbjct: 295 IHRPLIDKERIVQRQEVVQVFLDHFFERSDLTD-SLKGVYDIERLASRVSFGKTNPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ +S +P++ +ILE + E L +++ L ++ + + +I I E H
Sbjct: 354 QLATTLSSVPRIRAILEGM----EQPTLAYLIAQLDAIP----ELESLISAAIAPEAPHV 405
Query: 121 ERE-FFIRPSFDEDL 134
+ IR FDE L
Sbjct: 406 ITDGGIIRTGFDETL 420
>sp|Q04I96|MUTS_STRP2 DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
serotype 2 (strain D39 / NCTC 7466) GN=mutS PE=3 SV=1
Length = 844
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL D + IV+R V + +++ R +L + +L+G+ D++ LA R+ K KD
Sbjct: 295 IHRPLIDKERIVQRQEVVQVFLDHFFERSDLTD-SLKGVYDIERLASRVSFGKTNPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ +S +P++ +ILE + E L +++ L ++ + + +I I E H
Sbjct: 354 QLATTLSSVPRIRAILEGM----EQPTLAYLIAQLDAIP----ELESLISAAIAPEAPHV 405
Query: 121 ERE-FFIRPSFDEDL 134
+ IR FDE L
Sbjct: 406 ITDGGIIRTGFDETL 420
>sp|P0A3R4|HEXA_STRR6 DNA mismatch repair protein HexA OS=Streptococcus pneumoniae
(strain ATCC BAA-255 / R6) GN=hexA PE=3 SV=1
Length = 844
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL D + IV+R V + +++ R +L + +L+G+ D++ LA R+ K KD
Sbjct: 295 IHRPLIDKERIVQRQEVVQVFLDHFFERSDLTD-SLKGVYDIERLASRVSFGKTNPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ +S +P++ +ILE + E L +++ L ++ + + +I I E H
Sbjct: 354 QLATTLSSVPRIRAILEGM----EQPTLAYLIAQLDAIP----ELESLISAAIAPEAPHV 405
Query: 121 ERE-FFIRPSFDEDL 134
+ IR FDE L
Sbjct: 406 ITDGGIIRTGFDETL 420
>sp|P0A3R3|HEXA_STRPN DNA mismatch repair protein HexA OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=hexA PE=3
SV=1
Length = 844
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL D + IV+R V + +++ R +L + +L+G+ D++ LA R+ K KD
Sbjct: 295 IHRPLIDKERIVQRQEVVQVFLDHFFERSDLTD-SLKGVYDIERLASRVSFGKTNPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ +S +P++ +ILE + E L +++ L ++ + + +I I E H
Sbjct: 354 QLATTLSSVPRIRAILEGM----EQPTLAYLIAQLDAIP----ELESLISAAIAPEAPHV 405
Query: 121 ERE-FFIRPSFDEDL 134
+ IR FDE L
Sbjct: 406 ITDGGIIRTGFDETL 420
>sp|B5E385|MUTS_STRP4 DNA mismatch repair protein MutS OS=Streptococcus pneumoniae
serotype 19F (strain G54) GN=mutS PE=3 SV=1
Length = 844
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL D + IV+R V + +++ R +L + +L+G+ D++ LA R+ K KD
Sbjct: 295 IHRPLIDKERIVQRQEVVQVFLDHFFERSDLTD-SLKGVYDIERLASRVSFGKTNPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ +S +P++ +ILE + E L +++ L ++ + + +I I E H
Sbjct: 354 QLATTLSSVPRIRAILEGM----EQPTLAYLIAQLDAIP----ELESLISAAIAPEAPHV 405
Query: 121 ERE-FFIRPSFDEDL 134
+ IR FDE L
Sbjct: 406 ITDGGIIRTGFDETL 420
>sp|A8AZU4|MUTS_STRGC DNA mismatch repair protein MutS OS=Streptococcus gordonii (strain
Challis / ATCC 35105 / CH1 / DL1 / V288) GN=mutS PE=3
SV=1
Length = 847
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
++ PL D I++R V + ++ R +L + +L+G+ D++ L R+ K KD
Sbjct: 295 IQHPLIDKGRIIKRQDVVQVFLDYFFERSDLAD-SLKGVYDIERLVSRVSFGKTNPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ +S +P++ SILE+ +E+ L ++++ L ++ + + +I + ID +
Sbjct: 354 QLASTLSHVPQIRSILET----IESPALESLVARLDAIP----ELENLISSAIDPDAPQV 405
Query: 121 EREF-FIRPSFDEDL 134
E IR FDE L
Sbjct: 406 ITEGNIIRTGFDETL 420
>sp|Q8PMX2|MUTS_XANAC DNA mismatch repair protein MutS OS=Xanthomonas axonopodis pv.
citri (strain 306) GN=mutS PE=3 SV=1
Length = 902
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL+ D +V+RH AV L+ + A +L E A R L D++ + R+ + A +D
Sbjct: 349 LHRPLRLRDVLVQRHHAVGTLI-DAAADADLRE-AFRALGDLERILTRVALRSARPRDFS 406
Query: 61 RVYEGVSQLPKLISILESL 79
+ +G++ LPK+ +IL L
Sbjct: 407 TLRDGLALLPKVRAILAPL 425
>sp|A4G717|MUTS_HERAR DNA mismatch repair protein MutS OS=Herminiimonas arsenicoxydans
GN=mutS PE=3 SV=3
Length = 893
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 14 RHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLI 73
RHAA+N L+ T+A L L +PD++ +A RI + A +D + G+ QLP L
Sbjct: 346 RHAAINALMR-TDACTGLAS-TLASVPDVERIATRIALQSARPRDLAGMRGGLQQLPSLR 403
Query: 74 SILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIE 116
+ + Q+ +A L TI +L + S L +++E I +E
Sbjct: 404 AYVSMCNQDADAPLLKTIHDALATPSECL----DLVERAIALE 442
>sp|C0MAS5|MUTS_STRE4 DNA mismatch repair protein MutS OS=Streptococcus equi subsp. equi
(strain 4047) GN=mutS PE=3 SV=1
Length = 851
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 72/135 (53%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL +AI+ER + + +N R +L + +L+G+ D++ L+ R+ KA KD
Sbjct: 295 IDRPLVTSEAILERQEIIQVFLNAFIERTDLSD-SLKGVYDIERLSSRVSFGKANPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ ++++P + +ILE+ + L+ +++ + +L + + +I + ID + +
Sbjct: 354 QLGHTLAKVPYIKAILEAF----NSPYLDKLVNQIDTLP----ELEHLIRSAIDPDAPAT 405
Query: 121 EREF-FIRPSFDEDL 134
E IR FDE L
Sbjct: 406 INEGNIIRTGFDERL 420
>sp|Q3JYM3|MUTS_STRA1 DNA mismatch repair protein MutS OS=Streptococcus agalactiae
serotype Ia (strain ATCC 27591 / A909 / CDC SS700)
GN=mutS PE=3 SV=1
Length = 858
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 60/103 (58%), Gaps = 5/103 (4%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL ++ I ER + + ++ R +L E +L+G+ D++ LA R+ KA KD
Sbjct: 296 IDRPLVSMNRIKERQDIIQVFLDYFFERNDLTE-SLKGVYDIERLASRVSFGKANPKDLL 354
Query: 61 RVYEGVSQLPKLISILESLVQ---NVEASNLNTILSSLQSLSN 100
++ + +SQ+P++ IL+S Q ++ + ++T + L+SL N
Sbjct: 355 QLGQTLSQIPRIKMILQSFNQPELDIVVNKIDT-MPELESLIN 396
>sp|Q8DWW1|MUTS_STRA5 DNA mismatch repair protein MutS OS=Streptococcus agalactiae
serotype V (strain ATCC BAA-611 / 2603 V/R) GN=mutS PE=3
SV=1
Length = 858
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 71/135 (52%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL ++ I ER + + ++ R +L E +L+G+ D++ LA R+ KA KD
Sbjct: 296 IDRPLVSMNRIKERQDIIQVFLDYFFERNDLTE-SLKGVYDIERLASRVSFGKANPKDLL 354
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ + +SQ+P++ IL+S Q L+ I++ + + + + + +I T I E +
Sbjct: 355 QLGQTLSQIPRIKMILQSFNQ----PELDIIVNKIDT----MPELESLINTAIAPEAQAT 406
Query: 121 EREF-FIRPSFDEDL 134
E I+ FD+ L
Sbjct: 407 ITEGNIIKSGFDKQL 421
>sp|Q8E2R3|MUTS_STRA3 DNA mismatch repair protein MutS OS=Streptococcus agalactiae
serotype III (strain NEM316) GN=mutS PE=3 SV=1
Length = 858
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 71/135 (52%), Gaps = 10/135 (7%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL ++ I ER + + ++ R +L E +L+G+ D++ LA R+ KA KD
Sbjct: 296 IDRPLVSMNRIKERQDIIQVFLDYFFERNDLTE-SLKGVYDIERLASRVSFGKANPKDLL 354
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
++ + +SQ+P++ IL+S Q L+ I++ + + + + + +I T I E +
Sbjct: 355 QLGQTLSQIPRIKMILQSFNQ----PELDIIVNKIDT----MPELESLINTAIAPEAQAT 406
Query: 121 EREF-FIRPSFDEDL 134
E I+ FD+ L
Sbjct: 407 ITEGNIIKSGFDKQL 421
>sp|A7NPT5|MUTS_ROSCS DNA mismatch repair protein MutS OS=Roseiflexus castenholzii
(strain DSM 13941 / HLO8) GN=mutS PE=3 SV=1
Length = 1088
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRI--GRKKAGLKD 58
+ QPL DL + RH AV+ VN+ R ++ E LR + DM+ + RI G A +D
Sbjct: 394 ISQPLCDLARLRARHDAVDHFVNDAILRASVRE-TLRRVGDMERVVNRIIQGSGVATPRD 452
Query: 59 CYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQ 96
R+ + + LP L++ LE E +L+ +S+LQ
Sbjct: 453 MARLRDALRALPDLVAALEDWTPPQEDVDLSG-MSALQ 489
>sp|Q8DRW8|MUTS_STRMU DNA mismatch repair protein MutS OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=mutS PE=3 SV=1
Length = 849
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 16/138 (11%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ +PL I +R + +++ R +L + +L+G+ D++ LA R+ KA KD
Sbjct: 295 IDRPLVSSSLISKRQDIIQTFLDHFFERSDLSD-SLKGVYDIERLASRVSFGKANPKDLL 353
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSND---LAKFQEMIETTIDIER 117
++ + +SQ+P + +ILES SSL+SL N L + + +I + ID
Sbjct: 354 QLGQTLSQVPVIKTILESFAS-----------SSLESLINQIDTLPELEALIRSAIDSNA 402
Query: 118 FHSERE-FFIRPSFDEDL 134
+ E IR FDE L
Sbjct: 403 PITITEGGMIREGFDETL 420
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,270,926
Number of Sequences: 539616
Number of extensions: 1507493
Number of successful extensions: 5838
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 199
Number of HSP's that attempted gapping in prelim test: 5699
Number of HSP's gapped (non-prelim): 283
length of query: 146
length of database: 191,569,459
effective HSP length: 106
effective length of query: 40
effective length of database: 134,370,163
effective search space: 5374806520
effective search space used: 5374806520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)