Query psy13391
Match_columns 146
No_of_seqs 161 out of 1091
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 18:17:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13391.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13391hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3thx_A DNA mismatch repair pro 99.9 1.6E-23 5.5E-28 180.3 14.3 141 1-142 346-486 (934)
2 1wb9_A DNA mismatch repair pro 99.8 3.1E-20 1.1E-24 158.0 12.3 130 1-143 311-442 (800)
3 1ewq_A DNA mismatch repair pro 99.8 1.2E-18 4E-23 147.7 12.2 124 1-143 292-417 (765)
4 2o8b_B DNA mismatch repair pro 99.8 8.5E-19 2.9E-23 152.4 8.9 137 1-142 440-607 (1022)
5 3thx_B DNA mismatch repair pro 99.6 1.3E-14 4.3E-19 125.0 10.2 77 1-78 364-442 (918)
6 3c18_A Nucleotidyltransferase- 78.1 16 0.00055 27.4 8.5 52 16-78 86-143 (290)
7 2x49_A INVA, invasion protein 22.9 87 0.003 23.8 3.9 50 18-69 154-204 (333)
8 3mix_A Flagellar biosynthesis 19.9 52 0.0018 25.5 2.1 45 24-69 206-250 (382)
9 2q2f_A Selenoprotein S; anti-p 19.5 66 0.0023 19.5 2.0 18 4-21 35-52 (89)
10 4ard_A Capsid protein P27; vir 17.9 99 0.0034 19.8 2.7 24 45-68 26-49 (116)
No 1
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.90 E-value=1.6e-23 Score=180.26 Aligned_cols=141 Identities=40% Similarity=0.673 Sum_probs=120.6
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHhhCCCCCHHHHHHHHhcCCCCHHHHHHHHHHHhhHHHHHHHHHhhh
Q psy13391 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLV 80 (146)
Q Consensus 1 l~~Pl~d~~~I~~R~d~Ve~f~~~~~l~~~lr~~~Lk~i~DleRi~~ri~~~~~~~~dl~~l~~~l~~~~~i~~~l~~~~ 80 (146)
|++||+|+++|++|||+|++|+++..++..++...|++++|++|+++|+..|+++|+||..+++++..++.+.+.+....
T Consensus 346 l~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~~L~~i~DleRl~~ri~~~~~~~~dl~~l~~~l~~~~~l~~~l~~~~ 425 (934)
T 3thx_A 346 IKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKHE 425 (934)
T ss_dssp HHSCBCCHHHHHHHHHHHHHHHSCHHHHHHHHTTTGGGCCCHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHHTC
T ss_pred HhCcCCCHHHHHHHHHHHHHHhhChHHHHHHHHHHhcCCCCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46899999999999999999999999999999624999999999999999999999999999999999999999997643
Q ss_pred hhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhhhccccccccCcceeCCCCCHhHHHHHHHhc
Q psy13391 81 QNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHSEREFFIRPSFDEDLQGKAIKSN 142 (146)
Q Consensus 81 ~~~~~~l~~~~l~~l~~~~~~~~~l~~~I~~~id~~~~~~~~~~~Ik~g~d~~Ld~lr~~~~ 142 (146)
...++.+...++.++.+.+..+..+.++|+++||++++.+ |.++|++|||++||++|+.++
T Consensus 426 ~~~~~~l~~~~~~~l~~~~~~l~~~~~~i~~~i~~~~~~~-g~~~i~~g~~~~Ld~lr~~~~ 486 (934)
T 3thx_A 426 GKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQVEN-HEFLVKPSFDPNLSELREIMN 486 (934)
T ss_dssp CSSSTTGGGGTHHHHHHHHHHHHHHHHHHHTTBCTTGGGT-TCCCBCTTSSHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhhHHHHHHHHHHHhCcchhhc-CCceeCCCCCHHHHHHHHHHH
Confidence 1112233233456666666788999999999999998755 667999999999999999875
No 2
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.83 E-value=3.1e-20 Score=158.01 Aligned_cols=130 Identities=20% Similarity=0.333 Sum_probs=115.0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHhhCCCCCHHHHHHHHhcCCCCHHHHHHHHHHHhhHHHHHHHHHhhh
Q psy13391 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLV 80 (146)
Q Consensus 1 l~~Pl~d~~~I~~R~d~Ve~f~~~~~l~~~lr~~~Lk~i~DleRi~~ri~~~~~~~~dl~~l~~~l~~~~~i~~~l~~~~ 80 (146)
|++|++|.++|++||++|++|++ ++..++. .|++++|++|+++|+..|+++|+||..+++++..++.+++.+....
T Consensus 311 l~~Pl~d~~~I~~R~~~v~~~~~---~~~~l~~-~L~~~~Dler~l~r~~~~~~~~~dl~~l~~~l~~~~~l~~~l~~~~ 386 (800)
T 1wb9_A 311 LHMPVRDTRVLLERQQTIGALQD---FTAGLQP-VLRQVGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLETVD 386 (800)
T ss_dssp HHSCBCCHHHHHHHHHHHHHTGG---GHHHHHH-HHHTTCSHHHHHHHHHHTCCCHHHHHHHHHHHTTHHHHHHHHHSCC
T ss_pred hhCCCCCHHHHHHHHHHHHHHHH---HHHHHHH-HhcCCccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46899999999999999999998 7889998 9999999999999999999999999999999999999999987643
Q ss_pred hhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhhhccccc--cccCcceeCCCCCHhHHHHHHHhcc
Q psy13391 81 QNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERF--HSEREFFIRPSFDEDLQGKAIKSNL 143 (146)
Q Consensus 81 ~~~~~~l~~~~l~~l~~~~~~~~~l~~~I~~~id~~~~--~~~~~~~Ik~g~d~~Ld~lr~~~~~ 143 (146)
.+.+..+...+..++.+.+.|+++|+++++ ..+| ++|++|||++||++|+.++.
T Consensus 387 --------~~~L~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~-~~I~~g~~~eLd~lr~~~~~ 442 (800)
T 1wb9_A 387 --------SAPVQALREKMGEFAELRDLLERAIIDTPPVLVRDG-GVIASGYNEELDEWRALADG 442 (800)
T ss_dssp --------CHHHHHHHHHHCCCHHHHHHHHHHBCSSCCSCSTTC-CCBCTTSCHHHHHHHHHHHH
T ss_pred --------cHHHHHHHHhcccHHHHHHHHHHHhCcCchhhhhcC-CeeCCCCCHHHHHHHHHHHH
Confidence 345666666778899999999999999863 3335 59999999999999998753
No 3
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.78 E-value=1.2e-18 Score=147.70 Aligned_cols=124 Identities=25% Similarity=0.298 Sum_probs=108.1
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHhhCCCCCHHHHHHHHhcCCCCHHHHHHHHHHHhhHHHHHHHHHhhh
Q psy13391 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLV 80 (146)
Q Consensus 1 l~~Pl~d~~~I~~R~d~Ve~f~~~~~l~~~lr~~~Lk~i~DleRi~~ri~~~~~~~~dl~~l~~~l~~~~~i~~~l~~~~ 80 (146)
|++|++|.++|++||++|++|.++..++..++. .|++++|++|+++|+..|+++|+||..+++++..++.++..+. .
T Consensus 292 l~~Pl~d~~~I~~R~~~V~~l~~~~~~~~~l~~-~L~~~~Dler~l~r~~~~~~~~~dl~~l~~~l~~~~~l~~~l~-l- 368 (765)
T 1ewq_A 292 LRHPLLDRGPLEARLDRVEGFVREGALREGVRR-LLYRLADLERLATRLELGRASPKDLGALRRSLQILPELRALLG-E- 368 (765)
T ss_dssp HHSCCCCHHHHHHHHHHHHHHHHCHHHHHHHHH-HHTTCCCHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHC-T-
T ss_pred hhCcCCCHHHHHHHHHHHHHHHhCHHHHHHHHH-HHhcCCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH-H-
Confidence 468999999999999999999999999999999 9999999999999999999999999999999999999887764 1
Q ss_pred hhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhhhccccc--cccCcceeCCCCCHhHHHHHHHhcc
Q psy13391 81 QNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERF--HSEREFFIRPSFDEDLQGKAIKSNL 143 (146)
Q Consensus 81 ~~~~~~l~~~~l~~l~~~~~~~~~l~~~I~~~id~~~~--~~~~~~~Ik~g~d~~Ld~lr~~~~~ 143 (146)
.+.+..++.+.+.|+++|+++++ ..+| ++|++|||++||++|+.++.
T Consensus 369 ---------------~~~l~~~~~l~~~i~~~i~~~~~~~~~~~-~~i~~g~~~~Ld~lr~~~~~ 417 (765)
T 1ewq_A 369 ---------------EVGLPDLSPLKEELEAALVEDPPLKVSEG-GLIREGYDPDLDALRAAHRE 417 (765)
T ss_dssp ---------------TSCCCCCHHHHHHHHHHBCSSCCSCTTSS-CCBCTTSCHHHHHHHHHHHH
T ss_pred ---------------HhccccHHHHHHHHHHHhcccchhhhccC-CccCCCCCHHHHHHHHHHHH
Confidence 11334577889999999998864 3335 59999999999999987753
No 4
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.76 E-value=8.5e-19 Score=152.37 Aligned_cols=137 Identities=23% Similarity=0.267 Sum_probs=103.4
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHhhCCCCCHHHHHHHHhc-CCC-------------------CH---H
Q psy13391 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGR-KKA-------------------GL---K 57 (146)
Q Consensus 1 l~~Pl~d~~~I~~R~d~Ve~f~~~~~l~~~lr~~~Lk~i~DleRi~~ri~~-~~~-------------------~~---~ 57 (146)
|++||+|+++|++|||+|++|++++.++..++. .|+++||+||+++|+.. |++ ++ +
T Consensus 440 L~~PL~d~~~I~~RldaVe~l~~~~~~~~~l~~-~L~~i~DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 518 (1022)
T 2o8b_B 440 LCAPLCNHYAINDRLDAIEDLMVVPDKISEVVE-LLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKII 518 (1022)
T ss_dssp HHSCBCCHHHHHHHHHHHHHHHTCHHHHHHHHH-HHTTCCCHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHHHHHHHHHH
T ss_pred HhCccCCHHHHHHHHHHHHHHHhChHHHHHHHH-HHhcCccHHHHHHHHHhcCCcccccccchhhhhhhhhhccchhhHH
Confidence 468999999999999999999999999999999 99999999999999998 442 34 4
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHH--------hhhhHHHHHHHHHhhhccccccccCcceeCCC
Q psy13391 58 DCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQS--------LSNDLAKFQEMIETTIDIERFHSEREFFIRPS 129 (146)
Q Consensus 58 dl~~l~~~l~~~~~i~~~l~~~~~~~~~~l~~~~l~~l~~--------~~~~~~~l~~~I~~~id~~~~~~~~~~~Ik~g 129 (146)
|++.+.+++..++.+...+...... ..+..+..+.. .++.+.++...|+++||++...++|.+.+++|
T Consensus 519 ~l~~~l~~l~~~~~i~~~l~~~~~~----~~s~lL~~~~~~~~~~~~~~~~~l~~~~~~~~~~id~~~~~~~g~i~~~~g 594 (1022)
T 2o8b_B 519 DFLSALEGFKVMCKIIGIMEEVADG----FKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAG 594 (1022)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT----CCCHHHHHHTSBTTTSSSSCBCCCHHHHHHHHTTSCHHHHHHSCCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc----cCcHHHHHHHHhhccccccchHHHHHHHHHHHHHhCchhhhcCCcEeeCCC
Confidence 5555555577778888777642100 11344555532 23566777778889999887655465556999
Q ss_pred CCHhHHHHHHHhc
Q psy13391 130 FDEDLQGKAIKSN 142 (146)
Q Consensus 130 ~d~~Ld~lr~~~~ 142 (146)
||++||++|+.+.
T Consensus 595 ~~~~ld~~r~~~~ 607 (1022)
T 2o8b_B 595 FDSDYDQALADIR 607 (1022)
T ss_dssp C-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998654
No 5
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.56 E-value=1.3e-14 Score=125.01 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=69.2
Q ss_pred CCCCCCChHHHHHHHHHHHHHHh-CHHHHHHHHHHhhCCCCCHHHHHHHHhcCCCCHHHHHHHHHHHhhHH-HHHHHHHh
Q psy13391 1 MKQPLKDLDAIVERHAAVNILVN-NTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLP-KLISILES 78 (146)
Q Consensus 1 l~~Pl~d~~~I~~R~d~Ve~f~~-~~~l~~~lr~~~Lk~i~DleRi~~ri~~~~~~~~dl~~l~~~l~~~~-~i~~~l~~ 78 (146)
|++||+|+++|++|||+|++|+. +..++..++. .|++++|+||+++|+..|+++|+|+..++++|..++ .+...+..
T Consensus 364 l~~PL~d~~~I~~R~daVe~l~~~~~~~~~~l~~-~L~~i~DleRll~ri~~~~~~~~dl~~l~~~l~~l~~~l~~~l~~ 442 (918)
T 3thx_B 364 VTQPLLKLREINARLDAVSEVLHSESSVFGQIEN-HLRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPA 442 (918)
T ss_dssp HHSCBCCHHHHHHHHHHHHHHHSCCCTHHHHHHH-TTTTCCCHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHH-HHccCccHHHHHHHhccCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999984 6678999999 999999999999999999999999999999999887 56655543
No 6
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=78.10 E-value=16 Score=27.39 Aligned_cols=52 Identities=12% Similarity=0.172 Sum_probs=34.3
Q ss_pred HHHHHHHh------CHHHHHHHHHHhhCCCCCHHHHHHHHhcCCCCHHHHHHHHHHHhhHHHHHHHHHh
Q psy13391 16 AAVNILVN------NTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILES 78 (146)
Q Consensus 16 d~Ve~f~~------~~~l~~~lr~~~Lk~i~DleRi~~ri~~~~~~~~dl~~l~~~l~~~~~i~~~l~~ 78 (146)
.++.||++ ..+....+++ .++..||.+|-...+ +.+.+.++....-++.+.+
T Consensus 86 ~i~~wl~~gkivfdrn~~i~~l~~-~l~~fpd~~Re~k~~----------vefakLlr~y~~~K~~l~~ 143 (290)
T 3c18_A 86 RAVHWVSEGTIIFERNDYLTDLKK-QLRNFPETERCLQMS----------LSFAKLLRRFQDGRNLFSR 143 (290)
T ss_dssp HHHHHHHHSEEEEESTTHHHHHHH-HTTCCCHHHHHHHHH----------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcceEEEcchHHHHHHHH-HHHhCCHHHHHHHHH----------HHHHHHHHHHHHHHHHHHC
Confidence 47788874 3456778888 999999999876433 3444455555555555543
No 7
>2x49_A INVA, invasion protein INVA; protein transport, transport, pathogenesis; 1.50A {Salmonella enterica subsp} PDB: 2x4a_A* 3lw9_A
Probab=22.89 E-value=87 Score=23.77 Aligned_cols=50 Identities=6% Similarity=0.113 Sum_probs=39.8
Q ss_pred HHHHHh-CHHHHHHHHHHhhCCCCCHHHHHHHHhcCCCCHHHHHHHHHHHhhH
Q psy13391 18 VNILVN-NTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQL 69 (146)
Q Consensus 18 Ve~f~~-~~~l~~~lr~~~Lk~i~DleRi~~ri~~~~~~~~dl~~l~~~l~~~ 69 (146)
++.+-. ++.+.+++.. .-.+..+.++++++-.-+++.+|+..+.++|.-.
T Consensus 154 ld~l~~~~p~LveElp~--~l~l~~i~~VLq~LL~E~VsIRdl~tIlEaLae~ 204 (333)
T 2x49_A 154 LDQLEAKFPDLLKEVLR--HATVQRISEVLQRLLSERVSVRNMKLIMEALALW 204 (333)
T ss_dssp HHHHHTTCHHHHHHHHT--TSCHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHChHHHHHHhc--cCCHHHHHHHHHHHHhCCCCcccHHHHHHHHHHH
Confidence 333433 6888999944 4578899999999999999999999998888654
No 8
>3mix_A Flagellar biosynthesis protein FLHA; flagella biosynthesis, protein transport, type III secretion; 2.30A {Bacillus subtilis}
Probab=19.86 E-value=52 Score=25.54 Aligned_cols=45 Identities=9% Similarity=0.204 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHhcCCCCHHHHHHHHHHHhhH
Q psy13391 24 NTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQL 69 (146)
Q Consensus 24 ~~~l~~~lr~~~Lk~i~DleRi~~ri~~~~~~~~dl~~l~~~l~~~ 69 (146)
++.+.+++.. ..-.+..+.++++++-.-+++.+|+..+.++|.-.
T Consensus 206 ~P~LVeEl~p-~~l~l~~i~~VLq~LL~E~VsIRdlrtIlEaLae~ 250 (382)
T 3mix_A 206 YPVLVEEVTP-NPLSVGDIQKVLAKLLKEKVSIRNLVTIFETLADY 250 (382)
T ss_dssp CHHHHHHHTT-TTCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred ChHHHHHhcc-cCCCHHHHHHHHHHHHhCCCCcccHHHHHHHHHHH
Confidence 5666666643 33457788999999999999999999998887543
No 9
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=19.47 E-value=66 Score=19.48 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=14.4
Q ss_pred CCCChHHHHHHHHHHHHH
Q psy13391 4 PLKDLDAIVERHAAVNIL 21 (146)
Q Consensus 4 Pl~d~~~I~~R~d~Ve~f 21 (146)
|..|+++|-.||.+|+.-
T Consensus 35 a~~dPd~vv~RQEAl~aa 52 (89)
T 2q2f_A 35 AAVEPDVVVKRQEALAAA 52 (89)
T ss_dssp HTTSHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHH
Confidence 457889999999988764
No 10
>4ard_A Capsid protein P27; viral protein, retrovirus, GAG; 7.00A {Mason-pfizer monkey virus}
Probab=17.92 E-value=99 Score=19.80 Aligned_cols=24 Identities=8% Similarity=0.030 Sum_probs=17.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhh
Q psy13391 45 LAMRIGRKKAGLKDCYRVYEGVSQ 68 (146)
Q Consensus 45 i~~ri~~~~~~~~dl~~l~~~l~~ 68 (146)
++..+.....+|.||.++.+++-.
T Consensus 26 lL~~la~~~LtP~DWkslar~~L~ 49 (116)
T 4ard_A 26 IVESVADNWLTPTDWNTLVRAVLS 49 (116)
T ss_pred HHHHHHHhccChHhHHHHHHHHcC
Confidence 344555556799999999877654
Done!