RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13391
(146 letters)
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A*
2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Length = 934
Score = 122 bits (307), Expect = 3e-33
Identities = 58/146 (39%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+KQPL D + I ER V V + E R L E LR PD+ LA + R+ A L+DCY
Sbjct: 346 IKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCY 405
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
R+Y+G++QLP +I LE + L ++ L L +D +KFQEMIETT+D+++ +
Sbjct: 406 RLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQVEN 465
Query: 121 EREFFIRPSFDEDLQG-KAIKSNLKS 145
EF ++PSFD +L + I ++L+
Sbjct: 466 H-EFLVKPSFDPNLSELREIMNDLEK 490
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B*
3thy_B* 3thz_B*
Length = 918
Score = 66.5 bits (163), Expect = 8e-14
Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 8/135 (5%)
Query: 3 QPLKDLDAIVERHAAVN-ILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYR 61
QPL L I R AV+ +L + + + + LR LPD++ I KK ++ +
Sbjct: 366 QPLLKLREINARLDAVSEVLHSESSVFGQIENH-LRKLPDIERGLCSIYHKKCSTQEFFL 424
Query: 62 VYEGVSQLPKLIS-ILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
+ + + L I+ ++ ++++ L T++ + L E ++ +
Sbjct: 425 IVKTLYHLKSEFQAIIPAVNSHIQSDLLRTVILEIPELL-SPV---EHYLKILNEQAAKV 480
Query: 121 EREF-FIRPSFDEDL 134
+ + D L
Sbjct: 481 GDKTELFKDLSDFPL 495
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA
binding, DNA repair, mismatch recognition; HET: DNA ADP;
2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12
c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A*
1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Length = 800
Score = 62.1 bits (152), Expect = 2e-12
Identities = 26/133 (19%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 3 QPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRV 62
P++D ++ER + L + L LR + D++ + R+ + A +D R+
Sbjct: 313 MPVRDTRVLLERQQTIGALQDF---TAGLQP-VLRQVGDLERILARLALRTARPRDLARM 368
Query: 63 YEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHSER 122
QLP+L + LE++ +++ + + + + +L +++E I R
Sbjct: 369 RHAFQQLPELRAQLETV----DSAPVQALREKMGEFA-ELR---DLLERAIIDTPPVLVR 420
Query: 123 E-FFIRPSFDEDL 134
+ I ++E+L
Sbjct: 421 DGGVIASGYNEEL 433
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein,
mostly mixed alpha-beta structures, one domain is
entirely helical; HET: DNA; 2.20A {Thermus aquaticus}
SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A*
1fw6_A* 1ewr_A*
Length = 765
Score = 61.7 bits (151), Expect = 3e-12
Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 19/135 (14%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
++ PL D + R V V R + L L D++ LA R+ +A KD
Sbjct: 292 LRHPLLDRGPLEARLDRVEGFVREGALREGVRR-LLYRLADLERLATRLELGRASPKDLG 350
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
+ + LP+L ++L E L DL+ +E +E + +
Sbjct: 351 ALRRSLQILPELRALLG------EEVGL-----------PDLSPLKEELEAALVEDPPLK 393
Query: 121 ERE-FFIRPSFDEDL 134
E IR +D DL
Sbjct: 394 VSEGGLIREGYDPDL 408
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic
hypermutat protein-DNA complex, DNA mispair, cancer;
HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B*
2o8e_B* 2o8f_B*
Length = 1022
Score = 60.8 bits (148), Expect = 7e-12
Identities = 28/159 (17%), Positives = 50/159 (31%), Gaps = 28/159 (17%)
Query: 3 QPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRK---------- 52
PL + AI +R A+ L+ + + E L+ LPD++ L +I
Sbjct: 442 APLCNHYAINDRLDAIEDLMVVPDKISEVVEL-LKKLPDLERLLSKIHNVGSPLKSQNHP 500
Query: 53 -------------KAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLS 99
K + D EG + K+I I+E + ++ L ++S
Sbjct: 501 DSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQTKNP 560
Query: 100 ND-LAKFQEMIETTIDIERFHSERE---FFIRPSFDEDL 134
+ R+ + FD D
Sbjct: 561 EGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDY 599
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 7e-05
Identities = 31/180 (17%), Positives = 53/180 (29%), Gaps = 82/180 (45%)
Query: 3 QPLKDLDAI--VERHAAVNILVNNTEARMNL--------H---EY-AL------------ 36
QP A+ +E+ AA L +++ + H EY AL
Sbjct: 1733 QP-----ALTLMEK-AAFEDL----KSKGLIPADATFAGHSLGEYAALASLADVMSIESL 1782
Query: 37 ------RGL---------------PDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISI 75
RG+ M +A+ GR A E + + + +
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYGM--IAINPGRVAASFSQ-----EALQYVVERVGK 1835
Query: 76 LESLVQNVEASNLNT-----ILS----SLQSLSNDLAKFQEMIETTIDIER----FHSER 122
+ VE N N + + +L +++N L + IDI E
Sbjct: 1836 RTGWL--VEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ---KIDIIELQKSLSLEE 1890
Score = 33.1 bits (75), Expect = 0.025
Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 19/76 (25%)
Query: 56 LKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDI 115
L+D Y+ Y ++ L++ ++ L L +++ ++I
Sbjct: 173 LRDLYQTYH---------VLVGDLIK--FSAET------LSELIRTTLDAEKVFTQGLNI 215
Query: 116 ERFHSEREFFIRPSFD 131
+ P D
Sbjct: 216 LEWLENPS--NTPDKD 229
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 5e-04
Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 11 IVERHAAV-NILVNNTEARMNLHEYALRGLPDMQS---LAMRIGRKKAGLKDCYRVYEGV 66
+ R V + L T ++L ++ L + L + + L E +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISL-DHHSMTLTPDEVKSLLLKYLDCRPQDLPR-----EVL 323
Query: 67 SQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHSEREFFI 126
+ P+ +SI+ +++ L T + + ++ D K +IE+++++ R+ F
Sbjct: 324 TTNPRRLSIIAESIRD----GLATW-DNWKHVNCD--KLTTIIESSLNVLEPAEYRKMFD 376
Query: 127 RPS-FDED 133
R S F
Sbjct: 377 RLSVFPPS 384
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.004
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 24/48 (50%)
Query: 2 KQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPD-MQSLAMR 48
KQ LK L +A + L YA D +LA++
Sbjct: 19 KQALKKL-----------------QASLKL--YA----DDSAPALAIK 43
Score = 27.6 bits (60), Expect = 1.2
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 9/35 (25%)
Query: 84 EASNLNTILSSLQSLSND----LAKFQEMIETTID 114
E L + +SL+ ++D LA I+ T++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA-----IKATME 47
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins
(A/B), NAD(P)-binding rossmann-fold structural
genomics, NPPSFA; HET: NAP; 2.20A {Thermus
thermophilus}
Length = 207
Score = 27.9 bits (63), Expect = 0.90
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 7 DLDAIVERHAAVNILVNN 24
+ A++E +++LV+
Sbjct: 56 EAKALLEEAGPLDLLVHA 73
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 28.0 bits (62), Expect = 1.3
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 48 RIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNL 88
R+GR + + D Y G S+ L EA L
Sbjct: 515 RVGRNPSQIGDEYHYGGGTSEDD------TMLAHWTEAKIL 549
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative,
joint CE structural genomics; HET: NAD; 2.50A
{Thermotoga maritima} SCOP: c.2.1.2
Length = 249
Score = 27.5 bits (62), Expect = 1.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 6 KDLDAIVERHAAVNILVNNT 25
KDLD + E+ V+ILV N
Sbjct: 70 KDLDLLFEKVKEVDILVLNA 89
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 27.5 bits (62), Expect = 1.4
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 7 DLDAIVERHAAVNILVNN 24
++E++ V+IL+NN
Sbjct: 75 GCQDVIEKYPKVDILINN 92
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 27.6 bits (62), Expect = 1.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 8 LDAIVERHAAVNILVNN 24
+ A VER + ILVN+
Sbjct: 92 VAAAVERFGPIGILVNS 108
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 27.5 bits (62), Expect = 1.6
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 9 DAIVERHAAVNILVNN 24
D V +++LVNN
Sbjct: 73 DTAVTAFGGLHVLVNN 88
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 27.4 bits (62), Expect = 1.7
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 9 DAIVERHAAVNILVNN 24
A+ R +N+LVNN
Sbjct: 72 AAVQRRLGTLNVLVNN 87
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 27.2 bits (61), Expect = 2.0
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 9 DAIVERHAAVNILVNN 24
+ ++ +N LVNN
Sbjct: 92 KSTLDTFGKINFLVNN 107
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 27.2 bits (61), Expect = 2.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 8 LDAIVERHAAVNILVNN 24
+ A+VER+ V++LVNN
Sbjct: 90 VAAVVERYGPVDVLVNN 106
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 27.1 bits (61), Expect = 2.3
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 7 DLDAIVERHAAVNILVNNTEARMNLHEYALR 37
+ + V++LVNN A + L + L
Sbjct: 66 ATERALGSVGPVDLLVNN--AAVALLQPFLE 94
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 26.7 bits (60), Expect = 2.5
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 9 DAIVERHAAVNILVNN 24
+ V+IL+NN
Sbjct: 78 SKLDAEGIHVDILINN 93
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 27.0 bits (60), Expect = 2.6
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 9 DAIVERHAAVNILVNN 24
D + R V+IL NN
Sbjct: 79 DEVEARFGPVSILCNN 94
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 26.7 bits (60), Expect = 2.7
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 9 DAIVERHAAVNILVNN 24
DA ++ A++ +V+N
Sbjct: 64 DATLQHGEAIDTIVSN 79
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 26.7 bits (60), Expect = 2.8
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 8 LDAIVERHAAVNILVNN 24
DA + V+ LVNN
Sbjct: 73 FDATEKAFGPVSTLVNN 89
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium
loti} PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 26.7 bits (60), Expect = 2.8
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 8 LDAIVERHAAVNILVNN 24
I ++ILVNN
Sbjct: 71 FAEIQALTGGIDILVNN 87
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 26.8 bits (60), Expect = 3.0
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 8 LDAIVERHAAVNILVNN 24
+ +++ NI++NN
Sbjct: 95 VSELIKVAGHPNIVINN 111
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase;
HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 26.7 bits (60), Expect = 3.1
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 7 DLDAIVERHAAVNILVNNTEARMNLHEYALR 37
+ + V++LVNN A + + + L
Sbjct: 66 ATEKALGGIGPVDLLVNN--AALVIMQPFLE 94
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 26.7 bits (60), Expect = 3.2
Identities = 3/16 (18%), Positives = 8/16 (50%)
Query: 9 DAIVERHAAVNILVNN 24
+E +++LV+
Sbjct: 62 KRALEALGGLHVLVHA 77
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase;
HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2
PDB: 2hsd_A*
Length = 254
Score = 26.7 bits (60), Expect = 3.3
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 9 DAIVERHAAVNILVNN 24
E +V+ LVNN
Sbjct: 71 AYAREEFGSVDGLVNN 86
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 26.4 bits (59), Expect = 3.3
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 9 DAIVERHAAVNILVNN 24
+A +ILVNN
Sbjct: 79 EACERTLGCASILVNN 94
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 26.4 bits (59), Expect = 3.3
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 8 LDAIVERHAAVNILVNN 24
+ ++ V++L+NN
Sbjct: 94 AEKVLADFGKVDVLINN 110
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 26.4 bits (59), Expect = 3.4
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 9 DAIVERHAAVNILVNN 24
+ V+ILVNN
Sbjct: 100 KKVKAEIGDVSILVNN 115
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 26.4 bits (59), Expect = 3.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 9 DAIVERHAAVNILVNN 24
A+ E A ++ILVNN
Sbjct: 97 QALGELSARLDILVNN 112
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 26.4 bits (59), Expect = 3.5
Identities = 3/17 (17%), Positives = 9/17 (52%)
Query: 8 LDAIVERHAAVNILVNN 24
+V+ A++++ N
Sbjct: 110 ARTVVDAFGALDVVCAN 126
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 26.4 bits (59), Expect = 3.5
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 9 DAIVERHAAVNILVNN 24
+ER ++ LVNN
Sbjct: 88 REGIERFGRIDSLVNN 103
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 26.3 bits (59), Expect = 3.8
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 8 LDAIVERHAAVNILVNN 24
D + +++LVNN
Sbjct: 82 FDKVKAEVGEIDVLVNN 98
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 26.3 bits (59), Expect = 3.8
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 9 DAIVERHAAVNILVNN 24
+A+ E+ ++ +VN
Sbjct: 91 EAVKEKFGKLDTVVNA 106
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural
genomics, secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 26.3 bits (59), Expect = 4.0
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 8 LDAIVERHAAVNILVNN 24
+ E ++ LVNN
Sbjct: 71 VHQAAEVLGGLDTLVNN 87
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 26.3 bits (59), Expect = 4.1
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 6 KDLDAIVERHAAVNILVNN 24
K +D +++L N
Sbjct: 63 KQIDQFANEVERLDVLFNV 81
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 26.0 bits (58), Expect = 4.5
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 9 DAIVERHAAVNILVNN 24
VE ++++ N
Sbjct: 80 GRAVEEFGGIDVVCAN 95
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 26.0 bits (58), Expect = 4.6
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 9 DAIVERHAAVNILVNN 24
I ++ILVNN
Sbjct: 103 AQIESEVGIIDILVNN 118
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 26.0 bits (58), Expect = 4.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 8 LDAIVERHAAVNILVNN 24
+DA+V ++ LVNN
Sbjct: 98 VDAVVAEFGRIDCLVNN 114
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 26.0 bits (58), Expect = 4.6
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 9 DAIVERHAAVNILVNN 24
E +++LVNN
Sbjct: 90 RRAAEAFGGLDVLVNN 105
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 25.9 bits (58), Expect = 4.7
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 9 DAIVERHAAVNILVNN 24
++ E+ V+ILV
Sbjct: 82 RSVHEQEGRVDILVAC 97
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 26.0 bits (58), Expect = 4.7
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 8 LDAIVERHAAVNILVNN 24
A+ E V +LV+N
Sbjct: 72 FTAVEEHQGPVEVLVSN 88
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 25.9 bits (58), Expect = 4.8
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 8 LDAIVERHAAVNILVNN 24
+ +V + ++++LVNN
Sbjct: 73 IKEVVSQFGSLDVLVNN 89
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas;
oxidoreductase; 1.99A {Streptomyces coelicolor}
Length = 253
Score = 26.0 bits (58), Expect = 4.8
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 8 LDAIVERHAAVNILVNN 24
I E H V +L+ N
Sbjct: 78 YKEIEETHGPVEVLIAN 94
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 25.9 bits (58), Expect = 4.8
Identities = 1/17 (5%), Positives = 6/17 (35%)
Query: 8 LDAIVERHAAVNILVNN 24
+ ++ +V+
Sbjct: 68 FAEALAHLGRLDGVVHY 84
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold,
rossmann fold, oxidoreductase; HET: NAP; 2.30A
{Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 25.9 bits (58), Expect = 4.9
Identities = 3/17 (17%), Positives = 10/17 (58%)
Query: 8 LDAIVERHAAVNILVNN 24
+ ++ ++++VNN
Sbjct: 70 MKTAIDAWGTIDVVVNN 86
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 26.0 bits (58), Expect = 4.9
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 8 LDAIVERHAAVNILVNN 24
+++ ++ A+N+LVNN
Sbjct: 96 VESTLKEFGALNVLVNN 112
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus
anthracis}
Length = 246
Score = 25.9 bits (58), Expect = 5.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 8 LDAIVERHAAVNILVNN 24
+ V+ V+ILVNN
Sbjct: 73 VKQTVDVFGQVDILVNN 89
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 25.9 bits (58), Expect = 5.1
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 9 DAIVERHAAVNILVNN 24
A +++ + +LVNN
Sbjct: 81 KAALDQFGKITVLVNN 96
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 26.0 bits (58), Expect = 5.1
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 8 LDAIVERHAAVNILVNN 24
A++ER +++LVNN
Sbjct: 97 FAAVIERWGRLDVLVNN 113
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 26.0 bits (58), Expect = 5.1
Identities = 1/16 (6%), Positives = 6/16 (37%)
Query: 9 DAIVERHAAVNILVNN 24
+E ++ + +
Sbjct: 72 AEALEEFGRLHGVAHF 87
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 25.9 bits (58), Expect = 5.3
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 8 LDAIVERHAAVNILVNN 24
+ ++ ++ILVNN
Sbjct: 74 VKTAMDAFGRIDILVNN 90
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 26.0 bits (58), Expect = 5.3
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 9 DAIVERHAAVNILVNN 24
+A+ + V++LV+N
Sbjct: 64 EAVTSAYGQVDVLVSN 79
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 25.8 bits (57), Expect = 5.3
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 9 DAIVERHAAVNILVNN 24
D V+++ +N
Sbjct: 100 DEAFRLLGGVDVVFSN 115
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 26.0 bits (58), Expect = 5.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 8 LDAIVERHAAVNILVNN 24
++ I+ H V+ILVNN
Sbjct: 112 INKILTEHKNVDILVNN 128
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 26.0 bits (58), Expect = 5.5
Identities = 3/17 (17%), Positives = 9/17 (52%)
Query: 8 LDAIVERHAAVNILVNN 24
++ + ++ L+NN
Sbjct: 76 VEEAMSHFGKIDFLINN 92
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent
reductase, short chain dehydrogenase/reductase,
oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter
frateurii} PDB: 3ai2_A* 3ai1_A*
Length = 263
Score = 26.0 bits (58), Expect = 5.6
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 8 LDAIVERHAAVNILVNNT 25
++++ +ILVNN
Sbjct: 76 VESVRSSFGGADILVNNA 93
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 25.9 bits (58), Expect = 5.7
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 8 LDAIVERHAAVNILVNN 24
+ I ++ILVNN
Sbjct: 76 FEEIYNLVDGIDILVNN 92
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 26.0 bits (58), Expect = 5.7
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 9 DAIVERHAAVNILVNN 24
DA V V+ LV N
Sbjct: 95 DACVAAFGGVDKLVAN 110
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 25.9 bits (58), Expect = 5.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 8 LDAIVERHAAVNILVNN 24
L AI + V+ILVNN
Sbjct: 74 LKAITDEFGGVDILVNN 90
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 25.6 bits (57), Expect = 6.1
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 9 DAIVERHAAVNILVNN 24
DA+ H ++ +V+
Sbjct: 83 DAVTAWHGRLHGVVHC 98
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 25.6 bits (57), Expect = 6.1
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 9 DAIVERHAAVNILVNN 24
++ ++ LVN
Sbjct: 66 QRLLAETERLDALVNA 81
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 25.6 bits (57), Expect = 6.1
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 9 DAIVERHAAVNILVNN 24
A+ ++I+VNN
Sbjct: 86 GAVAAGLGRLDIVVNN 101
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 25.7 bits (57), Expect = 6.2
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 9 DAIVERHAAVNILVNN 24
A+ A +++LVNN
Sbjct: 103 AAVRAEFARLDLLVNN 118
>3imf_A Short chain dehydrogenase; structural genomics, infectious D
center for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 25.5 bits (57), Expect = 6.3
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 8 LDAIVERHAAVNILVNN 24
++ I E+ ++IL+NN
Sbjct: 74 IEQIDEKFGRIDILINN 90
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 25.6 bits (57), Expect = 6.5
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 9 DAIVERHAAVNILVNN 24
VE+ +++LVNN
Sbjct: 93 TQTVEKAGRLDVLVNN 108
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 25.6 bits (57), Expect = 6.7
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 9 DAIVERHAAVNILVNN 24
D + ++I V N
Sbjct: 101 DQMTGELGGIDIAVCN 116
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 25.6 bits (57), Expect = 6.7
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 9 DAIVERHAAVNILVNN 24
D + ++ LVNN
Sbjct: 78 DRTLAEFGGIDYLVNN 93
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 25.9 bits (57), Expect = 6.8
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 48 RIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQE 107
R+GR + D Y S+ +L EA +L ++ + +A+
Sbjct: 295 RVGRNPNQVGDEYHYGGATSEDD------SNLAHWTEAK---IMLDNIHMPNGLVAQLYG 345
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 25.7 bits (57), Expect = 6.9
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 8 LDAIVERHAAVNILVNN 24
+D ++ ++IL+N
Sbjct: 96 VDQALKEFGRIDILINC 112
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus
SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 25.5 bits (57), Expect = 6.9
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 9 DAIVERHAAVNILVNN 24
++ +ILVNN
Sbjct: 74 KQVISTFGRCDILVNN 89
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta
protein, NAD(P)-binding rossmann fold, csgid,
oxidoreductase; 1.95A {Francisella tularensis subsp}
Length = 247
Score = 25.5 bits (57), Expect = 7.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 8 LDAIVERHAAVNILVNN 24
I + A++ILVNN
Sbjct: 73 FAEIKAENLAIDILVNN 89
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 25.5 bits (57), Expect = 7.3
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 7 DLDAIVERHAAVNILVNN 24
+ ++ + + ++ILV N
Sbjct: 74 ECSNLISKTSNLDILVCN 91
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 25.6 bits (57), Expect = 7.4
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 9 DAIVERHAAVNILVNN 24
++ H ++LVNN
Sbjct: 98 TGVLAAHGRCDVLVNN 113
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 25.2 bits (56), Expect = 7.5
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 9 DAIVERHAAVNILVNN 24
A VE ++++
Sbjct: 69 AAAVEWGGLPELVLHC 84
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 25.6 bits (57), Expect = 7.6
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 9 DAIVERHAAVNILVNN 24
+ R ++ +VNN
Sbjct: 74 SETIRRFGRLDCVVNN 89
>3ak4_A NADH-dependent quinuclidinone reductase; SDR,
(R)-3-quinuclidinol, chiral alcohol, oxidoreductase;
HET: NAD; 2.00A {Agrobacterium tumefaciens}
Length = 263
Score = 25.6 bits (57), Expect = 7.6
Identities = 2/16 (12%), Positives = 6/16 (37%)
Query: 9 DAIVERHAAVNILVNN 24
++ ++L N
Sbjct: 78 QKAIDALGGFDLLCAN 93
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 25.4 bits (56), Expect = 7.7
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 73 ISILESLVQNVE----ASNLNTILSSLQSLSNDL 102
+S+L + L ++ L SL DL
Sbjct: 99 LSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDL 132
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 25.6 bits (56), Expect = 8.0
Identities = 9/23 (39%), Positives = 9/23 (39%)
Query: 48 RIGRKKAGLKDCYRVYEGVSQLP 70
RIGR L D Y VS
Sbjct: 273 RIGRNPEKLGDIYAYSGNVSSDN 295
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 25.3 bits (56), Expect = 8.0
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 8 LDAIVERHAAVNILVNN 24
AI +H+ V+I +NN
Sbjct: 102 FSAIRSQHSGVDICINN 118
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 25.3 bits (56), Expect = 8.0
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 9 DAIVERHAAVNILVNN 24
A VE+ V++L NN
Sbjct: 94 TATVEKFGRVDVLFNN 109
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 25.2 bits (56), Expect = 8.1
Identities = 2/16 (12%), Positives = 6/16 (37%)
Query: 9 DAIVERHAAVNILVNN 24
+ +++ V N
Sbjct: 103 SQQEKDFGTIDVFVAN 118
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET:
NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 25.1 bits (56), Expect = 8.4
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 9 DAIVERHAAVNILVNN 24
+ V++LVNN
Sbjct: 69 EEAAYALGRVDVLVNN 84
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 25.3 bits (56), Expect = 8.6
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 8 LDAIVERHAAVNILVNN 24
L + V++ VN
Sbjct: 77 LALAKGKFGRVDVAVNC 93
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 25.2 bits (56), Expect = 8.8
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 8 LDAIVERHAAVNILVNN 24
+ ++ILVNN
Sbjct: 92 AEVAEREMEGIDILVNN 108
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 25.1 bits (56), Expect = 9.1
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 9 DAIVERHAAVNILVNN 24
D + + V+ILVNN
Sbjct: 80 DFAISKLGKVDILVNN 95
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 25.4 bits (55), Expect = 9.1
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 10 AIVERHAAVNILVNNTEARMNLHEY 34
N++++ T+A LHE
Sbjct: 635 CFGPDGNGPNLVIDQTKAVQYLHEI 659
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 25.2 bits (56), Expect = 9.6
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 9 DAIVERHAAVNILVNN 24
D I + + ++++LVNN
Sbjct: 66 DHIFKEYGSISVLVNN 81
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 25.2 bits (56), Expect = 9.8
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 9 DAIVERHAAVNILVNN 24
E V++LVNN
Sbjct: 97 ATAEEAFGGVDVLVNN 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.356
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,086,767
Number of extensions: 113921
Number of successful extensions: 437
Number of sequences better than 10.0: 1
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 117
Length of query: 146
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 61
Effective length of database: 4,328,508
Effective search space: 264038988
Effective search space used: 264038988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)