RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13391
(146 letters)
>d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III
{Thermus aquaticus [TaxId: 271]}
Length = 275
Score = 47.6 bits (112), Expect = 7e-08
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 19/136 (13%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
++ PL D + R V V R + L L D++ LA R+ +A KD
Sbjct: 26 LRHPLLDRGPLEARLDRVEGFVREGALREGVRRL-LYRLADLERLATRLELGRASPKDLG 84
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTIDIERFHS 120
+ + LP+L ++L V DL+ +E +E + +
Sbjct: 85 ALRRSLQILPELRALLGEEVGL-----------------PDLSPLKEELEAALVEDPPLK 127
Query: 121 ERE-FFIRPSFDEDLQ 135
E IR +D DL
Sbjct: 128 VSEGGLIREGYDPDLD 143
>d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III
{Escherichia coli [TaxId: 562]}
Length = 297
Score = 42.3 bits (98), Expect = 5e-06
Identities = 26/134 (19%), Positives = 59/134 (44%), Gaps = 13/134 (9%)
Query: 1 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 60
+ P++D ++ER + L + T + LR + D++ + R+ + A +D
Sbjct: 42 LHMPVRDTRVLLERQQTIGALQDFTAGLQPV----LRQVGDLERILARLALRTARPRDLA 97
Query: 61 RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLSNDLAKFQEMIETTI-DIERFH 119
R+ QLP+L + LE++ + + +L+ + A+ ++++E I D
Sbjct: 98 RMRHAFQQLPELRAQLETVD--------SAPVQALREKMGEFAELRDLLERAIIDTPPVL 149
Query: 120 SEREFFIRPSFDED 133
I ++E+
Sbjct: 150 VRDGGVIASGYNEE 163
>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 234
Score = 26.6 bits (58), Expect = 1.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 6 KDLDAIVERHAAVNILVNN 24
KDLD + E+ V+ILV N
Sbjct: 55 KDLDLLFEKVKEVDILVLN 73
>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 252
Score = 26.5 bits (58), Expect = 1.2
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 8 LDAIVERHAAVNILVNN 24
++A+ + V++LV+N
Sbjct: 62 IEAVTSAYGQVDVLVSN 78
>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 251
Score = 25.8 bits (56), Expect = 1.9
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 9 DAIVERHAAVNILVNN 24
+A+ E+ ++ +VN
Sbjct: 75 EAVKEKFGKLDTVVNA 90
>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus
thermophilus [TaxId: 274]}
Length = 248
Score = 26.0 bits (57), Expect = 2.0
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 8 LDAIVERHAAVNILVNN 24
++ V++LVNN
Sbjct: 67 VEEAAYALGRVDVLVNN 83
>d1q50a_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Leishmania
mexicana [TaxId: 5665]}
Length = 561
Score = 25.6 bits (55), Expect = 2.7
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 22 VNNTEARMNLHEYALRG------LPDMQSLAMRIGRKKAGLKDCY-RVYEGVSQLPKLIS 74
VN+TE R LH ALR + D + + + A +KD RV G + S
Sbjct: 94 VNSTENRAVLH-VALRNRSNRPIIVDGKDVMSDVNNVLAQMKDFTERVRSGEWKGQTGKS 152
Query: 75 ILESLVQNVEASNLNT--ILSSLQSLSNDLAKFQEM 108
I + + S+L + +L+ S +
Sbjct: 153 IYNIVNIGIGGSDLGPVMVTEALKPFSKRDLHCFFV 188
>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase
{Azoarcus sp. ebn1 [TaxId: 76114]}
Length = 247
Score = 25.2 bits (55), Expect = 3.0
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 8 LDAIVERHAAVNILVNN 24
++ +ILVNN
Sbjct: 71 GKQVISTFGRCDILVNN 87
>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium
aquaticum [TaxId: 144185]}
Length = 258
Score = 25.5 bits (55), Expect = 3.2
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 9 DAIVERHAAVNILVNN 24
A ER ++ NN
Sbjct: 75 TATTERFGRIDGFFNN 90
>d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase
(TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 273
Score = 24.7 bits (53), Expect = 5.0
Identities = 4/21 (19%), Positives = 13/21 (61%)
Query: 92 LSSLQSLSNDLAKFQEMIETT 112
L+ + S++ D+ K + ++ +
Sbjct: 253 LNEIISMNGDVTKLKTIVVKS 273
>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 264
Score = 24.5 bits (53), Expect = 5.2
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 8 LDAIVERHAAVNILVNN 24
L + + ++ILVNN
Sbjct: 76 LSTTLGKFGKLDILVNN 92
>d1iata_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 556
Score = 24.4 bits (52), Expect = 6.4
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 22 VNNTEARMNLHEYALRGLPD 41
+N TE R LH ALR +
Sbjct: 89 INYTEGRAVLH-VALRNRSN 107
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.356
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 490,130
Number of extensions: 19862
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 14
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)