BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13395
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I99|A Chain A, Crystal Structure Of Human Mu_crystallin At 2.6 Angstrom
pdb|2I99|B Chain B, Crystal Structure Of Human Mu_crystallin At 2.6 Angstrom
Length = 312
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 84/173 (48%), Gaps = 16/173 (9%)
Query: 19 PLFLSDEQVRDLLDWESL-VPAIXXXXXXXXXX---XXIQPARLFMRIPEVNGVLLSMPG 74
P FLS +V + L SL +P + +QP R + + + G L MP
Sbjct: 4 PAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLGVMPA 63
Query: 75 YIKRTGPDGEDSLAIKVVTSFTDNKVKGL-PSVLATVLLYNTDNGKLKVVMEGTEITKWR 133
Y ED+L K+VT + D + + PS ATVLL+ NG L VM+G IT R
Sbjct: 64 Y-----SAAEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKR 118
Query: 134 TAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNR 183
TAA S +ATK L S + VL I+G+G QAY H + F K+ +NR
Sbjct: 119 TAAVSAIATKFLKPPSSE---VLCILGAGVQAYSHYEIFTEQFSFKEVRIWNR 168
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 197 GMATEDVITAKLIYDKYQA 215
GMA ED + AKLIYD + +
Sbjct: 293 GMAVEDTVAAKLIYDSWSS 311
>pdb|1VLL|A Chain A, Crystal Structure Of Alanine Dehydrogenase (Af1665) From
Archaeoglobus Fulgidus At 2.80 A Resolution
pdb|1VLL|B Chain B, Crystal Structure Of Alanine Dehydrogenase (Af1665) From
Archaeoglobus Fulgidus At 2.80 A Resolution
Length = 334
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 12/154 (7%)
Query: 20 LFLSDEQVRDLLDWESLVPAIXXXXXXXXXXXXIQPARLFMRIPEVNGVLLSMPGYIKRT 79
L L+ E+V L+ + + A+ P ++++ + G L +MP ++
Sbjct: 16 LILTQEEVESLISMDEAMNAVEEAFRLYALGKAQMPPKVYLEFEK--GDLRAMPAHL--M 71
Query: 80 GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
G G +K V S N KGLP+V+A ++L + + G VM+ T T RT AA
Sbjct: 72 GYAG-----LKWVNSHPGNPDKGLPTVMALMILNSPETGFPLAVMDATYTTSLRTGAAGG 126
Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFH 173
+A K+L ++ V +G G QAY +A
Sbjct: 127 IAAKYLARKNSS---VFGFIGCGTQAYFQLEALR 157
>pdb|1OMO|A Chain A, Alanine Dehydrogenase Dimer WBOUND NAD (ARCHAEAL)
pdb|1OMO|B Chain B, Alanine Dehydrogenase Dimer WBOUND NAD (ARCHAEAL)
Length = 322
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 12/154 (7%)
Query: 20 LFLSDEQVRDLLDWESLVPAIXXXXXXXXXXXXIQPARLFMRIPEVNGVLLSMPGYIKRT 79
L L+ E+V L+ + + A+ P ++++ + G L +MP ++
Sbjct: 4 LILTQEEVESLISMDEAMNAVEEAFRLYALGKAQMPPKVYLEFEK--GDLRAMPAHL--M 59
Query: 80 GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
G G +K V S N KGLP+V+A ++L + + G VM+ T T RT AA
Sbjct: 60 GYAG-----LKWVNSHPGNPDKGLPTVMALMILNSPETGFPLAVMDATYTTSLRTGAAGG 114
Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFH 173
+A K+L ++ V +G G QAY +A
Sbjct: 115 IAAKYLARKNSS---VFGFIGCGTQAYFQLEALR 145
>pdb|1U7H|A Chain A, Structure And A Proposed Mechanism For Ornithine
Cyclodeaminase From Pseudomonas Putida
pdb|1U7H|B Chain B, Structure And A Proposed Mechanism For Ornithine
Cyclodeaminase From Pseudomonas Putida
pdb|1X7D|A Chain A, Crystal Structure Analysis Of Ornithine Cyclodeaminase
Complexed With Nad And Ornithine To 1.6 Angstroms
pdb|1X7D|B Chain B, Crystal Structure Analysis Of Ornithine Cyclodeaminase
Complexed With Nad And Ornithine To 1.6 Angstroms
Length = 350
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 88 AIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFG 147
A K V N + L +V A +L + D+G ++ E T T RTAA S+ A + L
Sbjct: 67 AFKYVNGHPANTARNLHTVXAFGVLADVDSGYPVLLSELTIATALRTAATSLXAAQALAR 126
Query: 148 RSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK 180
+ K A++G+GAQ+ A AFH L +++
Sbjct: 127 PNARK---XALIGNGAQSEFQALAFHKHLGIEE 156
>pdb|3HDJ|A Chain A, The Crystal Structure Of Probable Ornithine Cyclodeaminase
From Bordetella Pertussis Tohama I
pdb|3HDJ|B Chain B, The Crystal Structure Of Probable Ornithine Cyclodeaminase
From Bordetella Pertussis Tohama I
Length = 313
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 110 VLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHA 169
+LL++ +G+ + +T+ RTAA +V+A L + + VL + G+G Q HA
Sbjct: 81 ILLFSAADGRPLATCDAGTLTRKRTAACTVLAAGAL---ARPRSSVLGLFGAGTQGAEHA 137
Query: 170 KAFHASLKLK 179
A L+
Sbjct: 138 AQLSARFALE 147
>pdb|3BRX|A Chain A, Crystal Structure Of Calcium-Bound Cotton Annexin Gh1
Length = 317
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 152 KDLVLAIMGSGAQAYIH-AKAFHASLKLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIY 210
KD LA++ S + ++ K F L+L RG EG +T + + T + K+I
Sbjct: 226 KDEFLALLRSTVKCLVYPEKYFEKVLRLAINRRGTDEGALT----RVVCTRAEVDLKVIA 281
Query: 211 DKYQAQHS 218
D+YQ ++S
Sbjct: 282 DEYQRRNS 289
>pdb|1N00|A Chain A, Annexin Gh1 From Cotton
Length = 321
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 152 KDLVLAIMGSGAQAYIH-AKAFHASLKLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIY 210
KD LA++ S + ++ K F L+L RG EG +T + + T + K+I
Sbjct: 230 KDEFLALLRSTVKCLVYPEKYFEKVLRLAINRRGTDEGALT----RVVCTRAEVDLKVIA 285
Query: 211 DKYQAQHS 218
D+YQ ++S
Sbjct: 286 DEYQRRNS 293
>pdb|2Y3U|A Chain A, Crystal Structure Of Apo Collagenase G From Clostridium
Histolyticum At 2.55 Angstrom Resolution
Length = 785
Score = 26.9 bits (58), Expect = 8.7, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 13/110 (11%)
Query: 114 NTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRS-----GDKDLVLAIMGSGAQAYIH 168
+TDNG L + GT T RT S+ + + LF + LV + G G
Sbjct: 394 STDNGGLYIEPRGTFYTYERTPQQSIFSLEELFRHEYTHYLQARYLVDGLWGQG------ 447
Query: 169 AKAFHASLKLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQHS 218
F+ +L ++ G E + G+ +I L DK ++S
Sbjct: 448 --PFYEKNRLTWFDEGTAEFFAGSTRTSGVLPRKLILGYLAKDKVDHRYS 495
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,988,413
Number of Sequences: 62578
Number of extensions: 220745
Number of successful extensions: 566
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 552
Number of HSP's gapped (non-prelim): 18
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)