BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13395
(224 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O54983|CRYM_MOUSE Thiomorpholine-carboxylate dehydrogenase OS=Mus musculus GN=Crym
PE=1 SV=1
Length = 313
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 96/188 (51%), Gaps = 15/188 (7%)
Query: 17 QPPLFLSDEQVRDLLDWESL-VPAIESVMVKVSKKE---VIQPARLFMRIPEVNGVLLSM 72
+ P FLS E+V+D L SL +P +E+ + SK V+QP R + + + G L M
Sbjct: 3 RAPAFLSAEEVQDHLRSSSLLIPPLEAALANFSKGPDGGVMQPVRTVVPVAKHRGFLGVM 62
Query: 73 PGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKW 132
P Y ED+L K+VT + + +PS A+VLL++ NG L VM+G IT
Sbjct: 63 PAYSA-----AEDALTTKLVTFYEGHSNTAVPSHQASVLLFDPSNGSLLAVMDGNVITAK 117
Query: 133 RTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNRGLTEGT 189
RTAA S +ATK L D VL I+G+G QAY H + F K+ +NR
Sbjct: 118 RTAAVSAIATKLLKPPGSD---VLCILGAGVQAYSHYEIFTEQFSFKEVRMWNRTRENAE 174
Query: 190 VTGSTKKG 197
ST +G
Sbjct: 175 KFASTVQG 182
>sp|Q9QYU4|CRYM_RAT Thiomorpholine-carboxylate dehydrogenase OS=Rattus norvegicus
GN=Crym PE=1 SV=1
Length = 313
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 92/174 (52%), Gaps = 15/174 (8%)
Query: 17 QPPLFLSDEQVRDLLDWESL-VPAIESVMVKVSKKE---VIQPARLFMRIPEVNGVLLSM 72
+ P FLS ++V+D L SL +P +E+ + SK V+QP R + + + G L M
Sbjct: 3 RAPAFLSADEVQDHLRSSSLLIPPLEAALANFSKGPDGGVMQPVRTVVPVAKHRGFLGVM 62
Query: 73 PGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKW 132
P Y ED+L K+VT + + +PS A+VLL++ NG L VM+G IT
Sbjct: 63 PAYSA-----AEDALTTKLVTFYEGHSNNAVPSHQASVLLFDPSNGSLLAVMDGNVITAK 117
Query: 133 RTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNR 183
RTAA S +ATK L D VL I+G+G QAY H + F K+ +NR
Sbjct: 118 RTAAVSAIATKFLKPPGSD---VLCILGAGVQAYSHYEIFTEQFSFKEVRMWNR 168
>sp|Q14894|CRYM_HUMAN Thiomorpholine-carboxylate dehydrogenase OS=Homo sapiens GN=CRYM
PE=1 SV=1
Length = 314
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 90/173 (52%), Gaps = 16/173 (9%)
Query: 19 PLFLSDEQVRDLLDWESL-VPAIESVMVKVS---KKEVIQPARLFMRIPEVNGVLLSMPG 74
P FLS +V + L SL +P +E+ + S + V+QP R + + + G L MP
Sbjct: 5 PAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLGVMPA 64
Query: 75 YIKRTGPDGEDSLAIKVVTSFTDNKVKGL-PSVLATVLLYNTDNGKLKVVMEGTEITKWR 133
Y ED+L K+VT + D + + PS ATVLL+ NG L VM+G IT R
Sbjct: 65 Y-----SAAEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKR 119
Query: 134 TAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNR 183
TAA S +ATK L S + VL I+G+G QAY H + F K+ +NR
Sbjct: 120 TAAVSAIATKFLKPPSSE---VLCILGAGVQAYSHYEIFTEQFSFKEVRIWNR 169
>sp|Q2KHX6|CRYM_BOVIN Thiomorpholine-carboxylate dehydrogenase OS=Bos taurus GN=CRYM PE=2
SV=1
Length = 314
Score = 87.4 bits (215), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 90/173 (52%), Gaps = 16/173 (9%)
Query: 19 PLFLSDEQVRDLLDWESLVPA-IESVMVKVSKKE---VIQPARLFMRIPEVNGVLLSMPG 74
P+FLS V+D L SL+ A +E+ + S V+QP R + + + G L MP
Sbjct: 5 PVFLSAADVQDHLRSSSLLIAPLETALANFSSGPDGGVVQPVRTVVPVAKHRGFLGVMPA 64
Query: 75 YIKRTGPDGEDSLAIKVVTSFTDNKVKG-LPSVLATVLLYNTDNGKLKVVMEGTEITKWR 133
Y ED+L K+VT + D+ +PS ATVLL+ NG L VM+G IT R
Sbjct: 65 Y-----SAAEDALTTKLVTFYEDHSATSTVPSHQATVLLFQPSNGSLLAVMDGNVITAKR 119
Query: 134 TAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNR 183
TAA S +ATK L + + VL I+G+G QAY H + F K+ +NR
Sbjct: 120 TAAVSAIATKFLKPPNSE---VLCILGAGVQAYSHYEVFTEQFFFKEVRIWNR 169
>sp|Q28488|CRYM_MACFL Thiomorpholine-carboxylate dehydrogenase OS=Macropus fuliginosus
GN=CRYM PE=2 SV=1
Length = 314
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 84/173 (48%), Gaps = 16/173 (9%)
Query: 19 PLFLSDEQVRDLLDWES-LVPAIESVMVKVSKKE---VIQPARLFMRIPEVNGVLLSMPG 74
P FL E V L S L+PA+E + S V+QP R + + + G L MP
Sbjct: 5 PAFLRSEDVERYLGSSSILLPALEKALANFSSGSEGGVVQPVRTVIPVAKHQGFLGIMPV 64
Query: 75 YIKRTGPDGEDSLAIKVVTSFTD-NKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWR 133
Y ED+L K+VT + + PS TVL ++ NG L +M+G IT R
Sbjct: 65 Y-----SASEDALTTKLVTFYEGMSPTSTAPSHQTTVLFFDPSNGSLLSIMDGNIITAKR 119
Query: 134 TAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNR 183
TAA S +ATK L S + VL I+G+G QAY H + F K+ +NR
Sbjct: 120 TAAVSAIATKFLKPPSSE---VLCILGAGVQAYSHYEIFKEQFSFKEVRIWNR 169
>sp|Q54CJ8|OCDL_DICDI Uncharacterized cyclodeaminase OS=Dictyostelium discoideum
GN=DDB_G0292894 PE=3 SV=1
Length = 368
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 14/159 (8%)
Query: 20 LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPE----------VNGVL 69
L + + V+ L+ + ++ E V +K SK+EV+ P R+ + + + +N
Sbjct: 2 LIIKESDVKKLISLKEVIDINEQVFIKESKEEVVCPERIILPVEKTQPQQDSNEPINKKQ 61
Query: 70 LSMPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEI 129
L Y K + E S+ IK+V +F +N KGLP+V AT++L + + G V+ T I
Sbjct: 62 LVGNLYFKPSLVVDE-SVGIKIVGTFANNANKGLPTVPATIILNDIETGLANAVIGATYI 120
Query: 130 TKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIH 168
T RTAA S ++ K+L S + + + GS QA +H
Sbjct: 121 TGARTAAGSAISVKYLATESPE---TIFVFGSSLQAQLH 156
>sp|P58339|OCD2_RHIME Ornithine cyclodeaminase 2 OS=Rhizobium meliloti (strain 1021)
GN=ocd2 PE=3 SV=2
Length = 330
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 10/163 (6%)
Query: 20 LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRT 79
L L ++VR L+ ++ A+E S +V QP + + P + G + GY K
Sbjct: 4 LLLKKDEVRRLIGMAEVIGAVEEAYKAFSSDQVEQPDYIGIHHPSLRGEIDFKLGYYK-- 61
Query: 80 GPDGEDSLAIKVVTS-FTDNKVK-GLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAA 137
+ +++K + FT+N + G+P+ + T+LL++ + L +M+G+ IT RT A+
Sbjct: 62 ---ANEIISMKAHSGGFTNNPAEHGVPNSIGTILLFDARSCALICIMDGSLITGLRTGAS 118
Query: 138 SVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK 180
V+ K L ++ +A +G+G QA + +A + +K++K
Sbjct: 119 GAVSVKALARKNA---RTVASIGTGNQARMQIRAVNEIMKIEK 158
>sp|O28608|ALADH_ARCFU Alanine dehydrogenase OS=Archaeoglobus fulgidus (strain ATCC 49558
/ VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ala PE=1
SV=1
Length = 322
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 12/154 (7%)
Query: 20 LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRT 79
L L+ E+V L+ + + A+E + + P ++++ + G L +MP ++
Sbjct: 4 LILTQEEVESLISMDEAMNAVEEAFRLYALGKAQMPPKVYLEFEK--GDLRAMPAHL--M 59
Query: 80 GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
G G +K V S N KGLP+V+A ++L + + G VM+ T T RT AA
Sbjct: 60 GYAG-----LKWVNSHPGNPDKGLPTVMALMILNSPETGFPLAVMDATYTTSLRTGAAGG 114
Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFH 173
+A K+L ++ V +G G QAY +A
Sbjct: 115 IAAKYLARKNSS---VFGFIGCGTQAYFQLEALR 145
>sp|P33728|OCD_RHIML Ornithine cyclodeaminase OS=Rhizobium meliloti GN=ocd PE=3 SV=1
Length = 320
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 14/111 (12%)
Query: 63 PEVNGVLLSMPGYI---KRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGK 119
P + ++ +MPG++ +R G +K + +++ N+ GLPS+ ++L + D G
Sbjct: 49 PRHDALIHAMPGWLPTQRRAG--------LKWIATYSSNRSVGLPSITGLLVLNDPDTGL 100
Query: 120 LKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAK 170
VM+ +T RTAAAS V +K+L K +A++G+G Q H +
Sbjct: 101 PVCVMDAAYLTAVRTAAASAVTSKYLSPSHVRK---IAVIGAGIQGLYHVE 148
>sp|Q9HDZ0|YK01_SCHPO Uncharacterized protein P11E10.01 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAP11E10.01 PE=3 SV=1
Length = 330
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 77/165 (46%), Gaps = 24/165 (14%)
Query: 21 FLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPE------VNGVLLSMPG 74
FLS E + L W L+ A+ + + V+ P RL I E N +LL MP
Sbjct: 7 FLSRETLSSSLGWIPLINALREIFTE----NVVCPTRLHYPIDEDNPSSTANNILLIMPC 62
Query: 75 YIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRT 134
+I L +K V F +N GLPS+ + LL + G ++G E+T RT
Sbjct: 63 WIP------GKFLGVKQVNVFPENTKHGLPSLSSHYLLSDATTGCHLAQLDGNELTSRRT 116
Query: 135 AAASVVATKHLFGRSGDKDLVLAIMGSG--AQAYIHAKAFHASLK 177
AAAS +A+ S + L I+GSG A+ IHA H S++
Sbjct: 117 AAASALASS---YLSKEDSTSLLIIGSGKVAEKLIHA---HCSVR 155
>sp|Q8FVE4|OCD_BRUSU Ornithine cyclodeaminase OS=Brucella suis biovar 1 (strain 1330)
GN=arcB PE=3 SV=1
Length = 358
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 88 AIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFG 147
K V N GL +V A +L N +G ++ E T +T RTAA S VA KHL
Sbjct: 74 GFKYVNGHPKNTRDGLQTVTAFGVLANVGSGYPMLLTEMTILTALRTAATSAVAAKHLAP 133
Query: 148 RSGDKDLVLAIMGSGAQAYIHAKAFHASL---KLKKYN 182
++ +AI+G+GAQ+ A AF A L KL+ Y+
Sbjct: 134 KNAR---TMAIIGNGAQSEFQALAFKAILGVDKLRLYD 168
>sp|Q59701|OCD_AGRT4 Ornithine cyclodeaminase OS=Agrobacterium tumefaciens (strain Ach5)
GN=arcB PE=3 SV=1
Length = 356
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 81 PDGEDSL-AIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
P + SL K V N +G +V A +L + NG ++ E T +T RTAA S
Sbjct: 67 PTSDGSLYGFKYVNGHPKNTHQGRQTVTAFGVLSDVGNGYPLLLSEMTILTALRTAATSA 126
Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK 180
+A K+L R K +AI+G+GAQ+ A+AF A L ++K
Sbjct: 127 LAAKYL-ARPNSK--TMAIIGNGAQSEFQARAFRAILGIQK 164
>sp|Q59175|OCD_BRUAB Ornithine cyclodeaminase OS=Brucella abortus biovar 1 (strain
9-941) GN=arcB PE=3 SV=1
Length = 359
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 88 AIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFG 147
K V N GL +V A +L + +G ++ E T +T RTAA S VA KHL
Sbjct: 75 GFKYVNGHPKNTRDGLQTVTAFGVLADVGSGYPMLLTEMTILTALRTAATSAVAAKHLAP 134
Query: 148 RSGDKDLVLAIMGSGAQAYIHAKAFHASL---KLKKYN 182
++ +AI+G+GAQ+ A AF A L KL+ Y+
Sbjct: 135 KNAR---TMAIIGNGAQSEFQALAFKAILGVDKLRLYD 169
>sp|P58338|OCD1_RHIME Ornithine cyclodeaminase 1 OS=Rhizobium meliloti (strain 1021)
GN=ocd1 PE=3 SV=1
Length = 329
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 12/155 (7%)
Query: 21 FLSDEQVRDL--LDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKR 78
L++ ++R + LD E+ V +E ++ K V P L + IPE G + Y+
Sbjct: 6 ILTEAELRGIVPLDREA-VACVEDAFRALATKAVAMPPILRLDIPEHRGEVDVKTAYVP- 63
Query: 79 TGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLK-VVMEGTEITKWRTAAA 137
G D AIK+ F DN GLPS ++L ++ G ++ ++++ +T RTAAA
Sbjct: 64 ----GLDGFAIKISPGFFDNPKIGLPSTNGMMVLLSSKTGLVQALLLDNGYLTDVRTAAA 119
Query: 138 SVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAF 172
VA + L S + V A+ G+G QA + +A
Sbjct: 120 GAVAARRL---SREDSSVAAVFGAGMQARLQLEAL 151
>sp|P09773|OCD_AGRT5 Ornithine cyclodeaminase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=arcB PE=3 SV=2
Length = 354
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 21/167 (12%)
Query: 21 FLSDEQVRDLLDWESLVPAIESVMVKVSK--KEVIQPARLFMRIPEV-----NGVLLSMP 73
F+S E + DL ++ IE+ +V+++ +E + F +IP + +GV+ MP
Sbjct: 12 FISVENMMDL----AVSTGIENFLVQLAGYIEEDFRRWESFDKIPRIASHSRDGVIELMP 67
Query: 74 GYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWR 133
DG K V N G +V A +L + D+G ++ E T +T R
Sbjct: 68 T------SDGT-LYGFKYVNGHPKNTKSGRQTVTAFGVLSDVDSGYPLLLSEMTILTALR 120
Query: 134 TAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK 180
TAA S +A K+L R + +A++G+GAQ+ A AF A + + +
Sbjct: 121 TAATSAIAAKYL-ARKDSR--TMALIGNGAQSEFQALAFKALIGVDR 164
>sp|Q8YCY1|OCD_BRUME Ornithine cyclodeaminase OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=arcB PE=3 SV=1
Length = 359
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 88 AIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFG 147
K V N GL +V A +L + +G ++ E T +T RTAA S VA KHL
Sbjct: 75 GFKYVNGHPKNTRDGLQTVTAFGVLADVGSGYPMLLTEMTILTALRTAATSAVAAKHLAP 134
Query: 148 RSGDKDLVLAIMGSGAQAYIHAKAFHASL---KLKKYN 182
++ +AI+G+ AQ+ A AF A L KL+ Y+
Sbjct: 135 KNAR---TMAIIGNSAQSEFQALAFKAILGVDKLRLYD 169
>sp|P55665|Y4TK_RHISN Uncharacterized cyclodeaminase y4tK OS=Rhizobium sp. (strain
NGR234) GN=NGR_a01480 PE=3 SV=1
Length = 331
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 55 PARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYN 114
P L + +P+ G + YI G AIK+ F DN GLPS ++L +
Sbjct: 42 PPILRLDVPDSRGEVDVKTAYIPGLG-----GFAIKISPGFFDNPKIGLPSTNGMMVLLS 96
Query: 115 TDNGKLK-VVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAF 172
+ G ++ ++++ +T RTAAA VA KHL + V I G+G QA + +A
Sbjct: 97 SQTGLVQALLLDNGYLTDVRTAAAGAVAAKHLSQQDAS---VATIFGAGVQARLQLRAL 152
>sp|P53110|YGP9_YEAST Uncharacterized protein YGL159W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YGL159W PE=1 SV=1
Length = 370
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 32/165 (19%)
Query: 22 LSDEQVRDL-LDW------ESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNG----VLL 70
++D++VR+ L+ ESL+ ES+ + E++ R+F ++ E N +
Sbjct: 6 ITDDEVREFYLNCSSQTIIESLLSLHESLRLYSQNHEIL-LNRMFKKLDETNADSNISHI 64
Query: 71 SMPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEIT 130
MP K D IK++ + + +G+ +V+ + GKL E +IT
Sbjct: 65 FMPVVSK-------DFSGIKILVNNNNKNFQGVINVIEP------ETGKLIGCFEAKQIT 111
Query: 131 KWRTAAASVVATKHLFGRSGDK-------DLVLAIMGSGAQAYIH 168
RTA AS + S DK L G+G QA+ H
Sbjct: 112 AIRTALASCIGLYKQLSCSHDKLFRFENGTCYLTCFGTGLQAFWH 156
>sp|P35173|CYT3_MOUSE Stefin-3 OS=Mus musculus GN=Stfa3 PE=2 SV=1
Length = 103
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 9 AISSTQPNQPPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGV 68
+S +P P + + ++VR LL+ E E K +V+ LF++I NG
Sbjct: 11 GLSEARPATPEIQMIADKVRPLLE-EQTNEKYEKFEAVEYKSQVVAGQNLFIKIDVGNGC 69
Query: 69 LLSMPGYIKRTGPDGEDSLAIKVVTSFTDNKVK 101
L M + G GED L +K + NK K
Sbjct: 70 FLHMKVF---RGLSGEDDLKLK---GYQTNKTK 96
>sp|B7GKD0|PRMA_ANOFW Ribosomal protein L11 methyltransferase OS=Anoxybacillus
flavithermus (strain DSM 21510 / WK1) GN=prmA PE=3 SV=1
Length = 312
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 74 GYIKRTGPDG--EDSLAIKV---VTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTE 128
G I + PD E+ + IK V SF V+ + + ++LYN D G+ K+ +
Sbjct: 47 GEIYQLNPDDYPEEGVIIKAYLPVNSFLGETVEEIKQAINNLMLYNIDIGRNKITISEVN 106
Query: 129 ITKWRTA 135
+W TA
Sbjct: 107 EEEWATA 113
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,465,045
Number of Sequences: 539616
Number of extensions: 3089359
Number of successful extensions: 5867
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5832
Number of HSP's gapped (non-prelim): 30
length of query: 224
length of database: 191,569,459
effective HSP length: 113
effective length of query: 111
effective length of database: 130,592,851
effective search space: 14495806461
effective search space used: 14495806461
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)