Query psy13395
Match_columns 224
No_of_seqs 121 out of 1065
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 18:22:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02423 OCD_Mu_crystall: Orni 100.0 2.5E-49 5.5E-54 356.4 18.5 192 18-217 1-204 (313)
2 PRK06823 ornithine cyclodeamin 100.0 2.1E-48 4.6E-53 350.9 21.6 191 19-217 1-204 (315)
3 TIGR02371 ala_DH_arch alanine 100.0 3.4E-47 7.4E-52 344.2 21.5 192 18-217 1-204 (325)
4 PRK07340 ornithine cyclodeamin 100.0 1.3E-45 2.9E-50 331.1 20.7 189 18-217 1-200 (304)
5 PRK08618 ornithine cyclodeamin 100.0 2.1E-45 4.5E-50 332.2 20.8 192 19-218 1-205 (325)
6 PRK06199 ornithine cyclodeamin 100.0 2.7E-45 5.8E-50 338.1 19.6 194 17-217 7-235 (379)
7 PRK06046 alanine dehydrogenase 100.0 4.7E-44 1E-48 323.6 21.8 191 18-217 2-205 (326)
8 COG2423 Predicted ornithine cy 100.0 3E-44 6.6E-49 325.1 18.7 192 17-216 2-206 (330)
9 PRK06141 ornithine cyclodeamin 100.0 1E-43 2.2E-48 319.9 20.8 186 19-217 1-201 (314)
10 TIGR02992 ectoine_eutC ectoine 100.0 2E-43 4.4E-48 319.4 19.8 191 19-217 1-206 (326)
11 PRK07589 ornithine cyclodeamin 100.0 6.8E-43 1.5E-47 318.6 19.1 184 19-216 2-204 (346)
12 PRK06407 ornithine cyclodeamin 100.0 1.6E-42 3.5E-47 310.9 19.5 181 19-217 1-194 (301)
13 PRK08291 ectoine utilization p 100.0 1.2E-41 2.7E-46 308.1 19.8 192 18-217 3-209 (330)
14 KOG3007|consensus 100.0 1.5E-31 3.3E-36 233.7 13.2 194 16-216 2-218 (333)
15 PF01488 Shikimate_DH: Shikima 98.3 1.7E-06 3.7E-11 68.9 5.9 67 152-218 11-88 (135)
16 PRK00258 aroE shikimate 5-dehy 98.2 6.5E-06 1.4E-10 73.1 8.3 89 127-218 97-198 (278)
17 PLN00203 glutamyl-tRNA reducta 98.2 2.5E-06 5.5E-11 82.3 6.0 89 130-218 238-342 (519)
18 COG0373 HemA Glutamyl-tRNA red 98.1 7.1E-06 1.5E-10 77.0 6.5 68 152-219 177-252 (414)
19 TIGR01035 hemA glutamyl-tRNA r 98.0 1.8E-05 4E-10 74.2 7.1 67 152-218 179-253 (417)
20 PRK13940 glutamyl-tRNA reducta 97.9 1.9E-05 4.1E-10 74.3 6.8 67 152-218 180-255 (414)
21 cd05213 NAD_bind_Glutamyl_tRNA 97.9 2E-05 4.4E-10 71.1 6.3 67 152-218 177-251 (311)
22 PRK00045 hemA glutamyl-tRNA re 97.8 5.1E-05 1.1E-09 71.3 6.9 67 152-218 181-255 (423)
23 cd01065 NAD_bind_Shikimate_DH 97.7 0.0001 2.2E-09 58.7 6.0 67 152-218 18-94 (155)
24 TIGR00507 aroE shikimate 5-deh 97.6 0.00021 4.5E-09 63.1 7.3 86 128-216 93-189 (270)
25 PF03807 F420_oxidored: NADP o 97.6 0.00014 3E-09 53.7 4.9 63 155-217 1-73 (96)
26 PRK06476 pyrroline-5-carboxyla 97.5 0.00013 2.8E-09 63.7 5.1 63 155-217 2-73 (258)
27 PF03446 NAD_binding_2: NAD bi 97.5 0.00015 3.2E-09 59.2 4.9 62 154-215 2-67 (163)
28 cd01078 NAD_bind_H4MPT_DH NADP 97.4 0.0006 1.3E-08 56.9 7.2 66 152-217 27-109 (194)
29 PRK12549 shikimate 5-dehydroge 97.2 0.00063 1.4E-08 60.8 6.1 65 152-216 126-203 (284)
30 PRK07680 late competence prote 97.2 0.00044 9.5E-09 60.9 4.9 63 155-217 2-74 (273)
31 TIGR01809 Shik-DH-AROM shikima 97.2 0.00067 1.4E-08 60.5 6.0 66 152-217 124-202 (282)
32 cd05191 NAD_bind_amino_acid_DH 97.1 0.0014 3.1E-08 48.0 5.6 32 152-183 22-55 (86)
33 PRK12491 pyrroline-5-carboxyla 97.0 0.0013 2.7E-08 58.5 5.5 63 154-217 3-75 (272)
34 COG0169 AroE Shikimate 5-dehyd 97.0 0.0017 3.8E-08 58.3 6.1 64 153-216 126-201 (283)
35 PLN02688 pyrroline-5-carboxyla 96.9 0.0016 3.5E-08 56.7 5.7 61 155-217 2-73 (266)
36 PF10727 Rossmann-like: Rossma 96.9 0.00072 1.6E-08 53.8 3.0 65 152-216 9-79 (127)
37 PRK13302 putative L-aspartate 96.9 0.002 4.4E-08 57.2 5.9 64 152-215 5-77 (271)
38 PF01408 GFO_IDH_MocA: Oxidore 96.9 0.0024 5.3E-08 48.5 5.4 61 155-216 2-73 (120)
39 PRK15461 NADH-dependent gamma- 96.8 0.0021 4.5E-08 57.5 5.7 63 154-216 2-68 (296)
40 COG2084 MmsB 3-hydroxyisobutyr 96.7 0.0023 5.1E-08 57.6 5.1 60 155-214 2-66 (286)
41 PRK11880 pyrroline-5-carboxyla 96.7 0.0029 6.3E-08 55.2 5.4 63 154-217 3-74 (267)
42 KOG0409|consensus 96.7 0.0024 5.2E-08 57.9 4.6 63 152-214 34-100 (327)
43 PF01210 NAD_Gly3P_dh_N: NAD-d 96.6 0.0032 6.9E-08 51.2 4.7 63 155-217 1-81 (157)
44 PRK07679 pyrroline-5-carboxyla 96.6 0.0039 8.4E-08 55.1 5.6 64 153-217 3-77 (279)
45 PRK12550 shikimate 5-dehydroge 96.6 0.0054 1.2E-07 54.7 6.3 65 153-218 122-191 (272)
46 PRK07502 cyclohexadienyl dehyd 96.6 0.0044 9.5E-08 55.5 5.6 65 152-216 5-77 (307)
47 TIGR01505 tartro_sem_red 2-hyd 96.5 0.0038 8.3E-08 55.3 5.0 60 155-214 1-64 (291)
48 cd01080 NAD_bind_m-THF_DH_Cycl 96.5 0.0082 1.8E-07 49.9 6.5 55 152-217 43-99 (168)
49 PRK12749 quinate/shikimate deh 96.5 0.0061 1.3E-07 54.7 6.2 66 152-217 123-208 (288)
50 PRK13304 L-aspartate dehydroge 96.5 0.0048 1.1E-07 54.5 5.3 62 154-215 2-71 (265)
51 PRK11559 garR tartronate semia 96.5 0.0052 1.1E-07 54.5 5.5 61 154-214 3-67 (296)
52 PRK00676 hemA glutamyl-tRNA re 96.5 0.0061 1.3E-07 56.1 6.0 64 152-218 173-242 (338)
53 PRK07634 pyrroline-5-carboxyla 96.4 0.0059 1.3E-07 52.4 5.5 64 153-217 4-78 (245)
54 TIGR01915 npdG NADPH-dependent 96.4 0.0056 1.2E-07 52.3 5.1 63 155-217 2-80 (219)
55 PRK14618 NAD(P)H-dependent gly 96.3 0.0072 1.6E-07 54.5 5.7 66 152-217 3-86 (328)
56 PRK14027 quinate/shikimate deh 96.3 0.0069 1.5E-07 54.3 5.5 66 152-217 126-206 (283)
57 PF00670 AdoHcyase_NAD: S-aden 96.3 0.0087 1.9E-07 49.7 5.6 64 152-217 22-90 (162)
58 PRK14982 acyl-ACP reductase; P 96.3 0.014 2.9E-07 53.9 7.4 90 125-217 129-227 (340)
59 PRK12490 6-phosphogluconate de 96.0 0.015 3.2E-07 52.0 5.8 62 155-216 2-70 (299)
60 TIGR00872 gnd_rel 6-phosphoglu 96.0 0.016 3.5E-07 51.8 6.0 62 155-216 2-70 (298)
61 PF13241 NAD_binding_7: Putati 95.9 0.015 3.4E-07 44.0 4.7 65 152-217 6-72 (103)
62 cd05291 HicDH_like L-2-hydroxy 95.8 0.014 3.1E-07 52.4 5.2 63 154-216 1-79 (306)
63 COG0345 ProC Pyrroline-5-carbo 95.8 0.019 4.1E-07 51.2 5.6 64 154-217 2-74 (266)
64 PLN02350 phosphogluconate dehy 95.8 0.014 3.1E-07 56.3 5.0 63 152-214 5-81 (493)
65 COG1712 Predicted dinucleotide 95.7 0.017 3.7E-07 50.6 4.8 62 155-216 2-71 (255)
66 PRK06928 pyrroline-5-carboxyla 95.7 0.021 4.5E-07 50.7 5.5 63 155-217 3-76 (277)
67 cd05311 NAD_bind_2_malic_enz N 95.7 0.033 7.1E-07 48.2 6.5 63 152-214 24-106 (226)
68 PF07991 IlvN: Acetohydroxy ac 95.6 0.024 5.2E-07 47.1 5.3 61 152-214 3-69 (165)
69 COG0287 TyrA Prephenate dehydr 95.6 0.031 6.7E-07 50.1 6.4 62 153-214 3-73 (279)
70 TIGR01692 HIBADH 3-hydroxyisob 95.6 0.014 3E-07 51.8 3.9 58 158-215 1-62 (288)
71 TIGR00936 ahcY adenosylhomocys 95.5 0.023 5.1E-07 53.5 5.4 64 152-217 194-262 (406)
72 PRK00094 gpsA NAD(P)H-dependen 95.5 0.026 5.7E-07 50.2 5.5 63 155-217 3-83 (325)
73 PRK08507 prephenate dehydrogen 95.4 0.031 6.8E-07 49.2 5.7 62 155-216 2-69 (275)
74 PRK06718 precorrin-2 dehydroge 95.4 0.045 9.8E-07 46.6 6.5 66 152-217 9-82 (202)
75 PRK15059 tartronate semialdehy 95.4 0.031 6.7E-07 50.1 5.7 60 155-215 2-65 (292)
76 PRK05479 ketol-acid reductoiso 95.4 0.033 7.2E-07 51.1 5.9 63 152-215 16-83 (330)
77 cd00401 AdoHcyase S-adenosyl-L 95.3 0.03 6.6E-07 52.9 5.6 64 152-217 201-269 (413)
78 PRK07530 3-hydroxybutyryl-CoA 95.3 0.039 8.4E-07 49.0 5.9 62 153-214 4-92 (292)
79 PRK07417 arogenate dehydrogena 95.3 0.045 9.7E-07 48.4 6.3 62 155-216 2-68 (279)
80 PRK06545 prephenate dehydrogen 95.3 0.042 9.1E-07 50.5 6.3 63 154-216 1-71 (359)
81 PRK06130 3-hydroxybutyryl-CoA 95.3 0.044 9.5E-07 48.9 6.3 65 152-216 3-90 (311)
82 PLN02858 fructose-bisphosphate 95.2 0.027 5.8E-07 60.4 5.4 63 152-214 3-69 (1378)
83 PRK06719 precorrin-2 dehydroge 95.2 0.052 1.1E-06 44.4 5.9 64 152-217 12-82 (157)
84 TIGR02853 spore_dpaA dipicolin 95.2 0.042 9E-07 49.3 5.7 64 152-215 150-219 (287)
85 PRK09599 6-phosphogluconate de 95.2 0.036 7.9E-07 49.5 5.3 60 155-216 2-70 (301)
86 PRK05476 S-adenosyl-L-homocyst 95.2 0.037 8E-07 52.5 5.5 64 152-217 211-279 (425)
87 PLN02545 3-hydroxybutyryl-CoA 95.1 0.043 9.3E-07 48.8 5.6 63 152-214 3-92 (295)
88 PRK09260 3-hydroxybutyryl-CoA 95.1 0.051 1.1E-06 48.2 6.0 62 154-215 2-91 (288)
89 TIGR00518 alaDH alanine dehydr 95.0 0.043 9.4E-07 50.9 5.5 62 152-213 166-238 (370)
90 TIGR01761 thiaz-red thiazoliny 94.9 0.046 1E-06 50.4 5.5 60 152-213 2-72 (343)
91 PF00056 Ldh_1_N: lactate/mala 94.9 0.045 9.7E-07 43.9 4.7 61 155-216 2-80 (141)
92 PRK07531 bifunctional 3-hydrox 94.9 0.055 1.2E-06 52.0 6.0 64 153-216 4-91 (495)
93 PRK12548 shikimate 5-dehydroge 94.8 0.065 1.4E-06 47.9 5.9 65 152-216 125-210 (289)
94 TIGR00465 ilvC ketol-acid redu 94.8 0.061 1.3E-06 49.0 5.7 62 153-216 3-70 (314)
95 PF03435 Saccharop_dh: Sacchar 94.8 0.057 1.2E-06 49.7 5.6 61 156-216 1-78 (386)
96 PLN02858 fructose-bisphosphate 94.8 0.046 1E-06 58.7 5.6 63 152-214 323-389 (1378)
97 PTZ00075 Adenosylhomocysteinas 94.7 0.069 1.5E-06 51.4 6.1 64 152-217 253-321 (476)
98 PRK07819 3-hydroxybutyryl-CoA 94.6 0.09 2E-06 46.9 6.4 62 152-213 4-92 (286)
99 COG2085 Predicted dinucleotide 94.6 0.068 1.5E-06 46.2 5.2 63 154-216 2-71 (211)
100 PF02737 3HCDH_N: 3-hydroxyacy 94.6 0.11 2.4E-06 43.3 6.4 60 155-214 1-87 (180)
101 PF01118 Semialdhyde_dh: Semia 94.6 0.095 2.1E-06 40.5 5.6 61 155-216 1-77 (121)
102 PRK08306 dipicolinate synthase 94.6 0.079 1.7E-06 47.6 5.9 62 152-215 151-220 (296)
103 PLN02494 adenosylhomocysteinas 94.5 0.069 1.5E-06 51.3 5.7 66 152-217 253-321 (477)
104 PLN02819 lysine-ketoglutarate 94.5 0.061 1.3E-06 56.2 5.6 65 152-216 568-659 (1042)
105 PTZ00345 glycerol-3-phosphate 94.5 0.088 1.9E-06 49.0 6.1 66 152-217 10-105 (365)
106 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.5 0.075 1.6E-06 51.3 5.8 63 152-214 4-93 (503)
107 PRK13403 ketol-acid reductoiso 94.4 0.078 1.7E-06 48.8 5.6 60 152-214 15-80 (335)
108 PRK13301 putative L-aspartate 94.4 0.07 1.5E-06 47.6 5.0 62 153-214 2-71 (267)
109 PRK07066 3-hydroxybutyryl-CoA 94.3 0.11 2.4E-06 47.4 6.2 62 152-213 6-91 (321)
110 PF02826 2-Hacid_dh_C: D-isome 94.2 0.086 1.9E-06 43.6 5.0 65 152-216 35-102 (178)
111 TIGR03215 ac_ald_DH_ac acetald 94.2 0.12 2.6E-06 46.5 6.2 62 154-216 2-75 (285)
112 PRK06129 3-hydroxyacyl-CoA deh 94.1 0.1 2.2E-06 46.8 5.6 62 154-215 3-92 (308)
113 PRK00048 dihydrodipicolinate r 94.1 0.1 2.2E-06 45.9 5.3 59 154-214 2-69 (257)
114 PRK08605 D-lactate dehydrogena 94.1 0.11 2.4E-06 47.4 5.8 63 152-215 145-210 (332)
115 PRK08300 acetaldehyde dehydrog 94.0 0.13 2.8E-06 46.8 6.1 64 152-216 3-81 (302)
116 PRK08293 3-hydroxybutyryl-CoA 94.0 0.13 2.8E-06 45.6 6.0 63 153-215 3-94 (287)
117 PRK08268 3-hydroxy-acyl-CoA de 94.0 0.12 2.5E-06 50.0 6.1 62 152-213 6-94 (507)
118 PRK14806 bifunctional cyclohex 94.0 0.1 2.3E-06 52.1 5.8 64 153-216 3-74 (735)
119 COG1648 CysG Siroheme synthase 93.9 0.16 3.4E-06 43.8 6.1 67 152-218 11-85 (210)
120 PRK14619 NAD(P)H-dependent gly 93.9 0.12 2.5E-06 46.4 5.6 53 153-215 4-57 (308)
121 PRK12439 NAD(P)H-dependent gly 93.9 0.14 2.9E-06 46.8 6.0 66 152-217 6-89 (341)
122 PRK12480 D-lactate dehydrogena 93.9 0.13 2.8E-06 47.1 5.8 64 152-216 145-209 (330)
123 PRK09310 aroDE bifunctional 3- 93.8 0.15 3.2E-06 48.9 6.4 65 152-216 331-401 (477)
124 PRK06522 2-dehydropantoate 2-r 93.7 0.18 4E-06 44.2 6.4 63 155-217 2-78 (304)
125 COG0569 TrkA K+ transport syst 93.7 0.14 3.1E-06 44.2 5.6 63 154-216 1-77 (225)
126 COG0059 IlvC Ketol-acid reduct 93.7 0.11 2.3E-06 47.5 4.8 62 152-214 17-83 (338)
127 TIGR03026 NDP-sugDHase nucleot 93.7 0.12 2.5E-06 48.4 5.2 61 155-215 2-86 (411)
128 PRK14620 NAD(P)H-dependent gly 93.5 0.17 3.7E-06 45.5 6.0 63 155-217 2-83 (326)
129 PRK06035 3-hydroxyacyl-CoA deh 93.5 0.18 3.9E-06 44.7 6.0 64 153-216 3-96 (291)
130 PRK08655 prephenate dehydrogen 93.3 0.17 3.7E-06 48.0 5.7 61 155-216 2-69 (437)
131 PF02254 TrkA_N: TrkA-N domain 93.3 0.14 3.1E-06 38.6 4.3 63 156-218 1-75 (116)
132 PRK15182 Vi polysaccharide bio 93.0 0.21 4.5E-06 47.3 5.9 65 152-216 5-87 (425)
133 PRK04207 glyceraldehyde-3-phos 93.0 0.22 4.8E-06 45.7 5.9 64 154-217 2-90 (341)
134 PRK15057 UDP-glucose 6-dehydro 92.9 0.21 4.6E-06 46.6 5.8 62 155-216 2-84 (388)
135 TIGR01470 cysG_Nterm siroheme 92.8 0.34 7.4E-06 41.3 6.4 65 152-216 8-80 (205)
136 KOG2741|consensus 92.7 0.11 2.3E-06 48.0 3.4 43 152-194 5-52 (351)
137 PRK00066 ldh L-lactate dehydro 92.7 0.3 6.6E-06 44.3 6.3 63 152-215 5-83 (315)
138 TIGR00873 gnd 6-phosphoglucona 92.5 0.22 4.8E-06 47.7 5.3 61 155-215 1-73 (467)
139 PRK15469 ghrA bifunctional gly 92.3 0.24 5.1E-06 45.0 5.1 62 152-214 135-199 (312)
140 PRK13243 glyoxylate reductase; 92.2 0.3 6.5E-06 44.7 5.6 64 152-215 149-214 (333)
141 cd05212 NAD_bind_m-THF_DH_Cycl 92.2 0.2 4.3E-06 40.5 4.0 39 179-217 32-83 (140)
142 PLN03139 formate dehydrogenase 92.0 0.34 7.5E-06 45.4 5.9 62 152-214 198-264 (386)
143 TIGR00561 pntA NAD(P) transhyd 92.0 0.36 7.8E-06 46.9 6.2 40 152-191 163-203 (511)
144 PRK13303 L-aspartate dehydroge 92.0 0.42 9E-06 42.2 6.1 61 154-215 2-71 (265)
145 COG0240 GpsA Glycerol-3-phosph 92.0 0.34 7.4E-06 44.6 5.7 64 154-217 2-83 (329)
146 cd05293 LDH_1 A subgroup of L- 91.9 0.39 8.4E-06 43.6 6.0 62 153-215 3-81 (312)
147 COG1748 LYS9 Saccharopine dehy 91.9 0.29 6.4E-06 45.9 5.3 62 154-215 2-78 (389)
148 PLN02256 arogenate dehydrogena 91.8 0.4 8.8E-06 43.3 6.0 62 152-216 35-103 (304)
149 PRK05808 3-hydroxybutyryl-CoA 91.8 0.39 8.6E-06 42.3 5.8 62 154-215 4-92 (282)
150 PTZ00142 6-phosphogluconate de 91.7 0.3 6.6E-06 46.9 5.3 40 155-194 3-43 (470)
151 PRK09424 pntA NAD(P) transhydr 91.7 0.61 1.3E-05 45.3 7.4 40 152-191 164-204 (509)
152 COG0673 MviM Predicted dehydro 91.7 0.38 8.2E-06 42.9 5.6 63 153-215 3-77 (342)
153 PRK06223 malate dehydrogenase; 91.6 0.36 7.7E-06 43.1 5.3 61 154-214 3-79 (307)
154 COG0111 SerA Phosphoglycerate 91.5 0.32 6.8E-06 44.6 5.0 62 153-214 142-206 (324)
155 smart00859 Semialdhyde_dh Semi 91.5 0.41 8.9E-06 36.7 4.9 61 155-215 1-75 (122)
156 COG1250 FadB 3-hydroxyacyl-CoA 91.5 0.41 8.9E-06 43.6 5.6 62 152-213 2-90 (307)
157 cd05297 GH4_alpha_glucosidase_ 91.3 0.34 7.4E-06 45.7 5.1 62 155-216 2-85 (423)
158 cd05292 LDH_2 A subgroup of L- 91.2 0.52 1.1E-05 42.5 6.0 62 155-216 2-78 (308)
159 TIGR03376 glycerol3P_DH glycer 91.2 0.35 7.6E-06 44.6 5.0 63 155-217 1-94 (342)
160 PRK11199 tyrA bifunctional cho 91.2 0.37 8E-06 44.7 5.1 54 152-215 97-152 (374)
161 PRK11064 wecC UDP-N-acetyl-D-m 91.2 0.5 1.1E-05 44.5 6.1 62 154-215 4-85 (415)
162 PTZ00431 pyrroline carboxylate 91.1 0.36 7.8E-06 42.3 4.8 61 154-217 4-69 (260)
163 PRK05562 precorrin-2 dehydroge 91.0 0.67 1.5E-05 40.3 6.3 65 152-216 24-96 (223)
164 smart00846 Gp_dh_N Glyceraldeh 90.9 0.79 1.7E-05 37.2 6.2 29 155-183 2-33 (149)
165 PRK11579 putative oxidoreducta 90.8 0.5 1.1E-05 42.9 5.6 62 153-215 4-74 (346)
166 PRK08229 2-dehydropantoate 2-r 90.8 0.5 1.1E-05 42.5 5.5 62 154-216 3-84 (341)
167 COG1052 LdhA Lactate dehydroge 90.8 0.4 8.6E-06 43.9 4.8 61 152-214 145-209 (324)
168 TIGR01921 DAP-DH diaminopimela 90.7 0.56 1.2E-05 43.1 5.8 61 153-214 3-69 (324)
169 PRK14188 bifunctional 5,10-met 90.5 0.46 1E-05 43.0 5.0 54 152-217 157-213 (296)
170 PRK09496 trkA potassium transp 90.4 0.66 1.4E-05 43.2 6.1 68 152-219 230-311 (453)
171 TIGR01546 GAPDH-II_archae glyc 90.2 0.51 1.1E-05 43.5 5.1 61 156-216 1-86 (333)
172 PTZ00117 malate dehydrogenase; 90.1 0.68 1.5E-05 42.0 5.8 63 152-215 4-83 (319)
173 PLN02712 arogenate dehydrogena 90.0 0.61 1.3E-05 46.7 5.8 61 152-215 368-435 (667)
174 PLN02520 bifunctional 3-dehydr 90.0 0.61 1.3E-05 45.3 5.7 65 152-216 378-450 (529)
175 cd05290 LDH_3 A subgroup of L- 89.7 0.66 1.4E-05 42.0 5.3 61 155-216 1-79 (307)
176 PRK07574 formate dehydrogenase 89.5 0.76 1.7E-05 43.1 5.8 62 152-214 191-257 (385)
177 cd00650 LDH_MDH_like NAD-depen 89.4 0.54 1.2E-05 41.1 4.4 61 156-216 1-81 (263)
178 PLN02928 oxidoreductase family 89.1 0.83 1.8E-05 42.0 5.6 62 152-214 158-235 (347)
179 TIGR02356 adenyl_thiF thiazole 89.1 0.7 1.5E-05 39.1 4.7 64 152-215 20-121 (202)
180 PRK10206 putative oxidoreducta 89.0 0.58 1.3E-05 42.7 4.5 61 154-215 2-74 (344)
181 PTZ00082 L-lactate dehydrogena 89.0 0.97 2.1E-05 41.2 5.9 62 153-215 6-84 (321)
182 PRK08818 prephenate dehydrogen 88.7 0.89 1.9E-05 42.4 5.6 55 153-215 4-61 (370)
183 PRK06436 glycerate dehydrogena 88.7 0.84 1.8E-05 41.3 5.2 61 152-215 121-183 (303)
184 PF05368 NmrA: NmrA-like famil 88.6 1.3 2.8E-05 37.3 6.1 61 156-217 1-76 (233)
185 PLN02712 arogenate dehydrogena 88.6 0.93 2E-05 45.4 5.9 61 153-216 52-119 (667)
186 PRK14194 bifunctional 5,10-met 88.4 0.8 1.7E-05 41.6 4.9 55 152-217 158-214 (301)
187 PRK12921 2-dehydropantoate 2-r 88.4 0.98 2.1E-05 39.8 5.4 61 155-216 2-79 (305)
188 PRK05225 ketol-acid reductoiso 88.4 0.53 1.1E-05 45.3 3.9 63 152-215 35-107 (487)
189 PLN02602 lactate dehydrogenase 88.1 1.1 2.3E-05 41.6 5.6 61 154-215 38-115 (350)
190 PLN02306 hydroxypyruvate reduc 88.0 1.1 2.3E-05 42.1 5.6 63 152-214 164-245 (386)
191 cd01075 NAD_bind_Leu_Phe_Val_D 88.0 1.9 4.2E-05 36.4 6.8 61 152-212 27-92 (200)
192 PF01113 DapB_N: Dihydrodipico 87.8 1.7 3.6E-05 33.9 5.8 61 155-215 2-77 (124)
193 PRK15409 bifunctional glyoxyla 87.2 1.3 2.8E-05 40.4 5.6 62 152-214 144-209 (323)
194 cd00300 LDH_like L-lactate deh 87.1 1.1 2.4E-05 40.3 5.0 60 156-215 1-76 (300)
195 PF13460 NAD_binding_10: NADH( 87.1 1.6 3.5E-05 35.0 5.5 59 156-215 1-70 (183)
196 PRK14192 bifunctional 5,10-met 87.0 1.9 4.2E-05 38.7 6.4 52 152-214 158-211 (283)
197 PF03721 UDPG_MGDP_dh_N: UDP-g 86.8 0.92 2E-05 38.0 4.1 60 155-214 2-85 (185)
198 PRK09496 trkA potassium transp 86.6 1.5 3.1E-05 40.9 5.7 65 155-219 2-79 (453)
199 PRK06270 homoserine dehydrogen 86.5 1.6 3.4E-05 40.0 5.8 22 154-175 3-24 (341)
200 COG1063 Tdh Threonine dehydrog 86.5 2.3 5.1E-05 38.8 6.9 64 154-217 170-250 (350)
201 TIGR01327 PGDH D-3-phosphoglyc 86.3 1.3 2.9E-05 43.0 5.4 62 152-214 137-202 (525)
202 KOG1370|consensus 86.1 1.1 2.4E-05 41.2 4.4 63 153-216 214-280 (434)
203 cd01339 LDH-like_MDH L-lactate 85.8 1 2.3E-05 40.2 4.1 60 156-215 1-76 (300)
204 PRK10637 cysG siroheme synthas 85.5 2.3 4.9E-05 40.6 6.5 66 152-217 11-84 (457)
205 PRK06349 homoserine dehydrogen 85.5 1.5 3.3E-05 41.3 5.3 63 153-215 3-82 (426)
206 PRK10669 putative cation:proto 85.5 1.4 3E-05 42.9 5.1 63 153-215 417-491 (558)
207 TIGR01759 MalateDH-SF1 malate 85.4 1.9 4E-05 39.5 5.6 65 152-216 2-90 (323)
208 TIGR02440 FadJ fatty oxidation 85.3 1.2 2.6E-05 44.8 4.7 62 152-213 303-392 (699)
209 TIGR02437 FadB fatty oxidation 85.0 1.2 2.6E-05 44.9 4.6 62 152-213 312-400 (714)
210 COG0039 Mdh Malate/lactate deh 84.7 1.7 3.8E-05 39.7 5.0 59 155-214 2-78 (313)
211 cd08237 ribitol-5-phosphate_DH 84.4 4.4 9.5E-05 36.4 7.5 63 152-215 163-232 (341)
212 PRK05442 malate dehydrogenase; 84.3 2.2 4.8E-05 39.0 5.6 64 152-215 3-90 (326)
213 PRK00257 erythronate-4-phospha 83.8 2.1 4.5E-05 40.2 5.3 61 152-215 115-177 (381)
214 PRK11790 D-3-phosphoglycerate 83.8 1.6 3.4E-05 41.1 4.6 61 152-214 150-212 (409)
215 PRK03562 glutathione-regulated 83.6 2.1 4.5E-05 42.5 5.5 67 153-219 400-478 (621)
216 PRK11730 fadB multifunctional 83.6 1.5 3.2E-05 44.3 4.5 62 152-213 312-400 (715)
217 PLN00112 malate dehydrogenase 83.4 2.3 4.9E-05 40.8 5.4 64 152-215 99-186 (444)
218 PRK14175 bifunctional 5,10-met 83.4 2.3 5E-05 38.4 5.3 55 152-217 157-213 (286)
219 PRK08410 2-hydroxyacid dehydro 83.2 2.1 4.5E-05 38.7 4.9 60 152-214 144-205 (311)
220 PRK11154 fadJ multifunctional 83.2 1.7 3.8E-05 43.7 4.8 37 152-188 308-346 (708)
221 PRK13581 D-3-phosphoglycerate 83.2 2 4.3E-05 41.7 5.1 62 152-215 139-204 (526)
222 cd01338 MDH_choloroplast_like 83.1 2.3 5E-05 38.8 5.2 64 153-216 2-89 (322)
223 PRK08762 molybdopterin biosynt 82.7 1.9 4.2E-05 39.9 4.6 64 152-215 134-235 (376)
224 PF02558 ApbA: Ketopantoate re 82.6 2.3 5E-05 33.4 4.4 61 156-217 1-79 (151)
225 PRK12475 thiamine/molybdopteri 82.3 2.2 4.9E-05 39.1 4.8 34 152-185 23-58 (338)
226 PRK03659 glutathione-regulated 82.2 2.2 4.7E-05 42.1 5.0 67 153-219 400-478 (601)
227 COG1893 ApbA Ketopantoate redu 81.9 3.4 7.3E-05 37.4 5.7 61 155-216 2-78 (307)
228 COG0499 SAM1 S-adenosylhomocys 81.7 2.2 4.8E-05 40.0 4.5 99 109-217 173-276 (420)
229 TIGR00036 dapB dihydrodipicoli 81.4 3.3 7.1E-05 36.6 5.4 61 155-215 3-78 (266)
230 PRK15076 alpha-galactosidase; 81.4 2.7 5.9E-05 39.9 5.1 63 154-216 2-86 (431)
231 PTZ00325 malate dehydrogenase; 81.4 3.4 7.5E-05 37.7 5.6 64 152-216 7-87 (321)
232 PRK03369 murD UDP-N-acetylmura 81.3 4.2 9.1E-05 38.9 6.5 63 153-217 12-82 (488)
233 TIGR01763 MalateDH_bact malate 81.0 4 8.6E-05 36.8 5.9 62 154-215 2-79 (305)
234 COG4091 Predicted homoserine d 80.8 2.9 6.3E-05 39.2 4.9 51 143-193 7-60 (438)
235 PRK05472 redox-sensing transcr 80.8 3.1 6.7E-05 35.3 4.8 70 143-215 77-156 (213)
236 PRK06249 2-dehydropantoate 2-r 80.8 4.6 9.9E-05 36.2 6.2 64 152-217 4-84 (313)
237 PRK05086 malate dehydrogenase; 80.6 4.8 0.0001 36.5 6.3 63 155-218 2-82 (312)
238 TIGR02441 fa_ox_alpha_mit fatt 80.6 1.8 3.8E-05 43.9 3.8 62 152-213 334-422 (737)
239 PRK06487 glycerate dehydrogena 80.5 3.1 6.7E-05 37.7 5.0 58 152-214 147-206 (317)
240 PRK06932 glycerate dehydrogena 79.8 3 6.4E-05 37.8 4.7 59 152-214 146-206 (314)
241 PRK15438 erythronate-4-phospha 79.2 3.7 8E-05 38.5 5.2 59 152-213 115-175 (378)
242 TIGR01757 Malate-DH_plant mala 78.9 4.2 9.1E-05 38.2 5.5 64 152-215 43-130 (387)
243 TIGR01771 L-LDH-NAD L-lactate 78.8 2.4 5.2E-05 38.2 3.7 57 158-215 1-74 (299)
244 cd01336 MDH_cytoplasmic_cytoso 78.8 4 8.7E-05 37.2 5.2 63 153-215 2-88 (325)
245 cd00704 MDH Malate dehydrogena 78.6 3.6 7.9E-05 37.5 4.9 62 155-216 2-87 (323)
246 TIGR01532 E4PD_g-proteo D-eryt 78.3 4.6 0.0001 37.0 5.5 21 155-175 1-21 (325)
247 PRK00141 murD UDP-N-acetylmura 78.2 6.5 0.00014 37.5 6.6 63 152-215 14-84 (473)
248 PRK05708 2-dehydropantoate 2-r 77.7 6.5 0.00014 35.2 6.2 64 154-217 3-82 (305)
249 PLN00106 malate dehydrogenase 77.6 5.1 0.00011 36.6 5.5 66 152-217 17-98 (323)
250 PRK00436 argC N-acetyl-gamma-g 77.6 4.5 9.8E-05 37.0 5.2 62 154-216 3-79 (343)
251 COG1004 Ugd Predicted UDP-gluc 77.6 5.2 0.00011 37.9 5.6 62 155-216 2-87 (414)
252 PRK08644 thiamine biosynthesis 77.3 4.9 0.00011 34.3 5.0 50 132-184 10-61 (212)
253 TIGR01758 MDH_euk_cyt malate d 76.6 3.6 7.7E-05 37.6 4.2 62 155-216 1-86 (324)
254 PF03447 NAD_binding_3: Homose 76.5 3.5 7.5E-05 31.3 3.5 57 160-216 1-70 (117)
255 PRK02318 mannitol-1-phosphate 76.4 5.6 0.00012 36.9 5.5 39 155-193 2-42 (381)
256 PRK14106 murD UDP-N-acetylmura 75.8 9.2 0.0002 35.7 6.9 67 152-218 4-81 (450)
257 PLN00141 Tic62-NAD(P)-related 75.7 8.1 0.00018 32.9 6.0 64 152-215 16-95 (251)
258 TIGR01724 hmd_rel H2-forming N 75.5 6.5 0.00014 36.4 5.5 61 155-215 2-91 (341)
259 COG5495 Uncharacterized conser 75.2 2.3 5.1E-05 37.7 2.5 44 152-195 9-54 (289)
260 PRK01438 murD UDP-N-acetylmura 75.2 10 0.00022 35.9 7.0 64 152-216 15-89 (480)
261 PF02056 Glyco_hydro_4: Family 74.5 3.5 7.7E-05 34.8 3.4 61 155-215 1-83 (183)
262 PLN02353 probable UDP-glucose 74.2 7.1 0.00015 37.6 5.7 60 155-214 3-87 (473)
263 cd01487 E1_ThiF_like E1_ThiF_l 73.4 5.8 0.00013 32.7 4.3 31 155-185 1-33 (174)
264 PRK07688 thiamine/molybdopteri 73.3 6 0.00013 36.3 4.9 33 152-184 23-57 (339)
265 KOG0069|consensus 73.3 7 0.00015 36.2 5.2 61 152-213 161-225 (336)
266 cd05294 LDH-like_MDH_nadp A la 73.0 9.3 0.0002 34.5 5.9 62 155-216 2-83 (309)
267 TIGR01772 MDH_euk_gproteo mala 70.1 7.1 0.00015 35.5 4.5 61 155-216 1-78 (312)
268 PLN03075 nicotianamine synthas 69.6 17 0.00036 33.1 6.7 61 152-212 123-202 (296)
269 CHL00194 ycf39 Ycf39; Provisio 68.1 12 0.00026 33.2 5.5 60 155-214 2-73 (317)
270 PRK05597 molybdopterin biosynt 67.6 8.6 0.00019 35.4 4.6 33 152-184 27-61 (355)
271 PRK05600 thiamine biosynthesis 66.7 10 0.00022 35.3 4.9 33 152-184 40-74 (370)
272 TIGR01850 argC N-acetyl-gamma- 66.7 10 0.00022 34.8 4.8 61 155-216 2-79 (346)
273 cd00757 ThiF_MoeB_HesA_family 66.7 10 0.00023 32.4 4.6 25 152-176 20-44 (228)
274 PRK12557 H(2)-dependent methyl 66.4 13 0.00028 34.3 5.4 61 155-217 2-93 (342)
275 COG0362 Gnd 6-phosphogluconate 66.2 6.6 0.00014 37.4 3.5 41 154-194 4-45 (473)
276 PRK14179 bifunctional 5,10-met 65.7 9.9 0.00021 34.3 4.4 55 152-217 157-213 (284)
277 cd01337 MDH_glyoxysomal_mitoch 65.5 12 0.00027 33.9 5.1 61 155-216 2-79 (310)
278 TIGR01202 bchC 2-desacetyl-2-h 65.2 29 0.00063 30.6 7.4 63 152-216 144-211 (308)
279 PLN02358 glyceraldehyde-3-phos 64.9 9.6 0.00021 35.2 4.3 31 153-183 5-38 (338)
280 PRK09880 L-idonate 5-dehydroge 64.2 33 0.00071 30.6 7.6 63 152-216 169-246 (343)
281 PLN02527 aspartate carbamoyltr 63.6 19 0.00042 32.6 6.0 63 152-216 150-228 (306)
282 cd05197 GH4_glycoside_hydrolas 62.7 13 0.00029 35.2 4.9 59 155-215 2-84 (425)
283 PRK14804 ornithine carbamoyltr 62.4 19 0.0004 32.8 5.6 65 152-217 152-230 (311)
284 PLN03209 translocon at the inn 61.5 21 0.00046 35.4 6.2 41 152-192 79-121 (576)
285 PF00185 OTCace: Aspartate/orn 59.5 24 0.00051 28.7 5.3 62 153-215 2-83 (158)
286 COG0686 Ald Alanine dehydrogen 59.4 12 0.00026 34.7 3.8 61 152-212 167-238 (371)
287 cd05298 GH4_GlvA_pagL_like Gly 59.2 17 0.00036 34.7 4.9 59 155-215 2-84 (437)
288 PLN02968 Probable N-acetyl-gam 58.7 17 0.00038 33.9 4.9 64 152-216 37-115 (381)
289 PRK04148 hypothetical protein; 57.3 30 0.00065 27.8 5.4 41 152-193 16-57 (134)
290 cd05312 NAD_bind_1_malic_enz N 57.2 41 0.00088 30.4 6.8 63 152-214 24-114 (279)
291 TIGR01296 asd_B aspartate-semi 57.0 15 0.00033 33.6 4.1 63 155-217 1-73 (339)
292 KOG2380|consensus 56.9 25 0.00053 33.2 5.4 66 152-217 51-120 (480)
293 PRK14191 bifunctional 5,10-met 56.7 21 0.00046 32.2 4.9 54 152-217 156-212 (285)
294 PRK05447 1-deoxy-D-xylulose 5- 56.6 14 0.00031 34.8 3.9 40 154-193 2-47 (385)
295 PRK14189 bifunctional 5,10-met 56.6 24 0.00051 31.9 5.2 53 152-217 157-213 (285)
296 PRK04284 ornithine carbamoyltr 56.1 24 0.00052 32.4 5.3 60 152-213 154-232 (332)
297 PRK01368 murD UDP-N-acetylmura 54.6 31 0.00068 32.8 6.0 63 152-216 5-74 (454)
298 cd05211 NAD_bind_Glu_Leu_Phe_V 54.5 64 0.0014 27.7 7.4 24 152-175 22-45 (217)
299 PF00070 Pyr_redox: Pyridine n 54.3 33 0.00071 23.9 4.7 34 155-188 1-35 (80)
300 PRK08664 aspartate-semialdehyd 53.8 25 0.00055 32.1 5.1 62 154-216 4-87 (349)
301 COG1064 AdhP Zn-dependent alco 53.6 37 0.00079 31.5 6.0 63 152-214 166-238 (339)
302 cd05296 GH4_P_beta_glucosidase 53.2 23 0.00049 33.6 4.7 59 155-215 2-85 (419)
303 PF02629 CoA_binding: CoA bind 53.0 22 0.00047 26.2 3.7 37 152-188 2-41 (96)
304 PLN02427 UDP-apiose/xylose syn 52.8 31 0.00068 31.3 5.5 40 152-191 13-55 (386)
305 PRK12562 ornithine carbamoyltr 52.5 32 0.0007 31.7 5.5 61 152-213 155-233 (334)
306 PF10100 DUF2338: Uncharacteri 51.4 22 0.00048 33.8 4.3 40 154-193 2-43 (429)
307 cd08230 glucose_DH Glucose deh 50.2 50 0.0011 29.5 6.3 63 152-216 172-249 (355)
308 PRK04690 murD UDP-N-acetylmura 50.0 43 0.00094 31.8 6.2 64 153-216 8-80 (468)
309 COG2910 Putative NADH-flavin r 49.9 38 0.00082 29.2 5.1 62 155-216 2-73 (211)
310 PRK14170 bifunctional 5,10-met 49.6 24 0.00053 31.8 4.1 54 152-217 156-212 (284)
311 PRK01713 ornithine carbamoyltr 49.6 35 0.00076 31.4 5.3 59 152-212 155-232 (334)
312 cd01076 NAD_bind_1_Glu_DH NAD( 49.4 85 0.0018 27.1 7.4 24 152-175 30-53 (227)
313 PTZ00188 adrenodoxin reductase 49.2 29 0.00063 33.9 4.9 69 152-220 38-141 (506)
314 TIGR00978 asd_EA aspartate-sem 48.2 29 0.00062 31.7 4.5 61 155-216 2-84 (341)
315 PF02882 THF_DHG_CYH_C: Tetrah 48.2 41 0.00089 27.7 5.0 55 152-217 35-91 (160)
316 COG0771 MurD UDP-N-acetylmuram 47.8 38 0.00083 32.6 5.4 62 152-214 6-78 (448)
317 PRK14183 bifunctional 5,10-met 47.5 28 0.00061 31.4 4.2 53 152-217 156-212 (281)
318 PRK14171 bifunctional 5,10-met 47.4 26 0.00057 31.7 4.0 54 152-217 158-214 (288)
319 PRK04523 N-acetylornithine car 47.3 47 0.001 30.6 5.7 60 153-213 169-252 (335)
320 PRK10792 bifunctional 5,10-met 47.1 35 0.00076 30.8 4.7 55 152-217 158-214 (285)
321 PRK14173 bifunctional 5,10-met 47.0 29 0.00063 31.4 4.2 54 152-217 154-210 (287)
322 PRK06728 aspartate-semialdehyd 45.9 43 0.00093 31.1 5.3 65 152-216 4-79 (347)
323 PRK14166 bifunctional 5,10-met 45.4 30 0.00065 31.2 4.1 54 152-217 156-212 (282)
324 PRK14169 bifunctional 5,10-met 44.5 33 0.00072 30.9 4.2 54 152-217 155-211 (282)
325 KOG2742|consensus 44.0 14 0.00031 34.4 1.8 38 156-193 5-44 (367)
326 TIGR02354 thiF_fam2 thiamine b 43.8 39 0.00085 28.5 4.4 33 152-184 20-54 (200)
327 PRK08040 putative semialdehyde 43.7 41 0.00088 31.0 4.7 66 152-217 3-78 (336)
328 PRK00683 murD UDP-N-acetylmura 43.0 79 0.0017 29.4 6.7 62 154-216 4-70 (418)
329 PF03059 NAS: Nicotianamine sy 42.9 31 0.00067 31.0 3.7 63 153-215 121-202 (276)
330 TIGR01745 asd_gamma aspartate- 42.1 43 0.00094 31.3 4.7 62 155-216 2-75 (366)
331 PF13478 XdhC_C: XdhC Rossmann 41.9 25 0.00054 28.0 2.7 31 156-187 1-33 (136)
332 KOG1800|consensus 41.7 55 0.0012 31.3 5.2 33 152-184 19-54 (468)
333 PRK14187 bifunctional 5,10-met 40.9 40 0.00086 30.6 4.1 54 152-217 159-215 (294)
334 PF00743 FMO-like: Flavin-bind 40.8 41 0.00089 32.8 4.5 33 153-185 1-34 (531)
335 COG4569 MhpF Acetaldehyde dehy 40.8 66 0.0014 28.3 5.2 63 153-216 4-82 (310)
336 PRK12809 putative oxidoreducta 40.7 68 0.0015 31.8 6.1 34 152-185 309-343 (639)
337 PF01262 AlaDh_PNT_C: Alanine 40.6 60 0.0013 26.2 4.9 41 152-193 19-61 (168)
338 PRK08192 aspartate carbamoyltr 40.4 67 0.0014 29.6 5.6 65 152-217 158-237 (338)
339 COG0289 DapB Dihydrodipicolina 40.1 62 0.0014 29.0 5.1 63 154-216 3-80 (266)
340 KOG2666|consensus 39.9 19 0.0004 33.7 1.9 62 154-215 2-88 (481)
341 PRK08017 oxidoreductase; Provi 39.9 55 0.0012 27.3 4.7 39 154-192 3-43 (256)
342 PRK14168 bifunctional 5,10-met 39.5 40 0.00087 30.6 3.9 54 152-217 160-220 (297)
343 PRK02006 murD UDP-N-acetylmura 39.3 97 0.0021 29.5 6.8 64 153-217 7-81 (498)
344 PRK00811 spermidine synthase; 38.9 67 0.0014 28.5 5.3 77 107-188 31-113 (283)
345 PLN02852 ferredoxin-NADP+ redu 38.9 45 0.00098 32.3 4.4 23 152-174 25-47 (491)
346 PRK14176 bifunctional 5,10-met 38.7 55 0.0012 29.6 4.7 54 152-217 163-219 (287)
347 KOG0024|consensus 38.5 84 0.0018 29.3 5.8 66 152-217 169-254 (354)
348 PF12134 PRP8_domainIV: PRP8 d 38.4 21 0.00044 31.3 1.8 93 84-182 24-127 (231)
349 PRK01710 murD UDP-N-acetylmura 38.4 87 0.0019 29.5 6.2 61 153-215 14-87 (458)
350 PF00899 ThiF: ThiF family; I 38.3 74 0.0016 24.5 4.9 31 153-183 2-34 (135)
351 PRK07060 short chain dehydroge 37.9 67 0.0015 26.5 4.9 42 152-193 8-51 (245)
352 PRK03803 murD UDP-N-acetylmura 37.7 1.1E+02 0.0023 28.7 6.7 65 152-216 5-79 (448)
353 TIGR00670 asp_carb_tr aspartat 37.7 71 0.0015 28.9 5.3 61 152-213 149-224 (301)
354 PRK03515 ornithine carbamoyltr 37.6 71 0.0015 29.4 5.3 59 152-212 155-232 (336)
355 PF13454 NAD_binding_9: FAD-NA 37.6 43 0.00093 26.7 3.5 30 157-186 1-36 (156)
356 PRK02472 murD UDP-N-acetylmura 37.1 1.1E+02 0.0023 28.5 6.5 63 153-215 5-78 (447)
357 TIGR01777 yfcH conserved hypot 36.7 50 0.0011 28.1 4.0 60 156-215 1-67 (292)
358 PRK14180 bifunctional 5,10-met 36.6 73 0.0016 28.8 5.1 54 152-217 157-213 (282)
359 PRK01390 murD UDP-N-acetylmura 36.5 95 0.0021 29.2 6.1 61 153-215 9-75 (460)
360 PF13738 Pyr_redox_3: Pyridine 36.4 62 0.0013 26.1 4.3 35 152-186 166-201 (203)
361 PRK14190 bifunctional 5,10-met 36.3 61 0.0013 29.3 4.6 54 152-217 157-213 (284)
362 KOG1399|consensus 36.2 47 0.001 31.9 4.0 24 152-175 5-28 (448)
363 PF03949 Malic_M: Malic enzyme 36.0 1.1E+02 0.0024 27.2 6.1 63 152-214 24-115 (255)
364 PF00106 adh_short: short chai 35.1 72 0.0016 24.6 4.4 30 155-184 2-34 (167)
365 PRK14181 bifunctional 5,10-met 35.0 56 0.0012 29.6 4.1 54 152-217 152-212 (287)
366 PRK11891 aspartate carbamoyltr 35.0 60 0.0013 31.1 4.5 62 152-213 240-316 (429)
367 COG1023 Gnd Predicted 6-phosph 34.9 50 0.0011 29.7 3.6 39 155-193 2-41 (300)
368 PF02844 GARS_N: Phosphoribosy 34.8 75 0.0016 24.2 4.2 20 155-176 2-21 (100)
369 TIGR02964 xanthine_xdhC xanthi 34.7 57 0.0012 28.5 4.1 35 152-186 99-134 (246)
370 KOG0172|consensus 34.7 31 0.00068 32.8 2.5 60 154-213 3-76 (445)
371 PRK06940 short chain dehydroge 34.6 58 0.0013 28.1 4.1 39 154-192 3-41 (275)
372 PRK02102 ornithine carbamoyltr 34.6 92 0.002 28.7 5.5 60 152-213 154-232 (331)
373 PRK05671 aspartate-semialdehyd 34.5 67 0.0014 29.5 4.6 64 153-216 4-77 (336)
374 KOG3124|consensus 34.3 42 0.00092 30.1 3.1 63 155-217 2-73 (267)
375 COG0057 GapA Glyceraldehyde-3- 34.3 98 0.0021 28.7 5.6 25 154-178 2-27 (335)
376 TIGR03649 ergot_EASG ergot alk 34.2 52 0.0011 28.3 3.7 35 155-189 1-37 (285)
377 TIGR03366 HpnZ_proposed putati 34.2 1.3E+02 0.0027 26.0 6.2 63 152-216 120-198 (280)
378 PRK07200 aspartate/ornithine c 33.8 1.1E+02 0.0024 28.9 6.1 61 152-213 186-270 (395)
379 PF13380 CoA_binding_2: CoA bi 33.5 80 0.0017 24.1 4.3 63 154-217 1-67 (116)
380 TIGR03316 ygeW probable carbam 33.4 1.1E+02 0.0023 28.6 5.8 59 153-213 170-253 (357)
381 COG0434 SgcQ Predicted TIM-bar 33.1 34 0.00073 30.5 2.3 67 124-193 178-255 (263)
382 PF01494 FAD_binding_3: FAD bi 31.7 72 0.0016 27.6 4.3 33 155-187 3-36 (356)
383 PF00905 Transpeptidase: Penic 31.3 53 0.0011 28.9 3.3 20 108-127 1-20 (304)
384 cd01491 Ube1_repeat1 Ubiquitin 31.1 93 0.002 28.0 4.9 32 152-183 18-51 (286)
385 PF10087 DUF2325: Uncharacteri 31.0 79 0.0017 23.2 3.8 56 155-215 1-58 (97)
386 PRK14185 bifunctional 5,10-met 30.9 70 0.0015 29.0 4.1 54 152-217 156-216 (293)
387 PRK04663 murD UDP-N-acetylmura 30.9 1.6E+02 0.0035 27.5 6.7 64 153-216 7-79 (438)
388 PRK14178 bifunctional 5,10-met 30.5 83 0.0018 28.4 4.4 52 152-215 151-205 (279)
389 PRK14172 bifunctional 5,10-met 30.5 90 0.0019 28.1 4.6 54 152-217 157-213 (278)
390 PRK14184 bifunctional 5,10-met 29.8 77 0.0017 28.7 4.1 54 152-217 156-216 (286)
391 PRK04308 murD UDP-N-acetylmura 29.8 1.9E+02 0.0042 26.9 7.0 64 153-216 5-78 (445)
392 COG1179 Dinucleotide-utilizing 29.6 48 0.001 29.6 2.7 25 152-176 29-53 (263)
393 KOG2304|consensus 29.5 58 0.0013 29.1 3.2 36 152-187 10-46 (298)
394 PRK14193 bifunctional 5,10-met 29.5 77 0.0017 28.6 4.1 54 152-217 157-215 (284)
395 COG4017 Uncharacterized protei 29.4 1.3E+02 0.0028 26.3 5.2 66 143-215 38-109 (254)
396 PLN02516 methylenetetrahydrofo 29.1 83 0.0018 28.7 4.2 53 152-216 166-221 (299)
397 PRK15116 sulfur acceptor prote 29.0 64 0.0014 28.8 3.5 25 152-176 29-53 (268)
398 PRK08163 salicylate hydroxylas 28.9 85 0.0018 28.4 4.3 34 153-186 4-38 (396)
399 cd02005 TPP_PDC_IPDC Thiamine 28.8 1.8E+02 0.0039 23.8 5.9 41 123-167 43-83 (183)
400 PRK14182 bifunctional 5,10-met 28.5 1E+02 0.0022 27.9 4.6 54 152-217 156-212 (282)
401 PLN02172 flavin-containing mon 28.5 91 0.002 29.8 4.6 24 152-175 9-32 (461)
402 PLN02178 cinnamyl-alcohol dehy 28.4 2.6E+02 0.0056 25.5 7.5 64 152-216 178-253 (375)
403 PRK07326 short chain dehydroge 28.3 1E+02 0.0022 25.3 4.4 41 153-193 6-48 (237)
404 cd01079 NAD_bind_m-THF_DH NAD 28.3 1.1E+02 0.0023 26.3 4.5 64 152-217 61-138 (197)
405 PRK05993 short chain dehydroge 28.1 1.1E+02 0.0024 26.2 4.7 41 153-193 4-46 (277)
406 PLN02897 tetrahydrofolate dehy 27.9 89 0.0019 29.1 4.2 54 152-217 213-269 (345)
407 PRK12826 3-ketoacyl-(acyl-carr 27.8 1.1E+02 0.0024 25.2 4.6 41 152-192 5-47 (251)
408 cd01483 E1_enzyme_family Super 27.8 62 0.0013 25.1 2.8 30 155-184 1-32 (143)
409 PRK06598 aspartate-semialdehyd 27.8 1.2E+02 0.0027 28.4 5.2 63 154-217 2-77 (369)
410 COG1486 CelF Alpha-galactosida 27.5 1.1E+02 0.0024 29.4 5.0 63 153-215 3-87 (442)
411 cd00115 LMWPc Substituted upda 27.4 78 0.0017 24.6 3.4 22 199-220 70-91 (141)
412 PRK00536 speE spermidine synth 27.3 1.4E+02 0.003 26.6 5.2 72 108-186 29-105 (262)
413 PRK08328 hypothetical protein; 27.2 1.1E+02 0.0024 26.3 4.5 31 152-182 26-58 (231)
414 PRK14186 bifunctional 5,10-met 27.1 1.1E+02 0.0024 27.8 4.6 54 152-217 157-213 (297)
415 COG1062 AdhC Zn-dependent alco 27.1 2.3E+02 0.005 26.6 6.7 37 152-188 185-223 (366)
416 PRK14177 bifunctional 5,10-met 27.1 1.1E+02 0.0023 27.7 4.5 54 152-217 158-214 (284)
417 COG3380 Predicted NAD/FAD-depe 26.7 91 0.002 28.6 3.9 41 155-195 3-44 (331)
418 TIGR03736 PRTRC_ThiF PRTRC sys 26.6 75 0.0016 28.0 3.4 24 152-175 10-33 (244)
419 PRK14167 bifunctional 5,10-met 26.5 92 0.002 28.3 4.0 54 152-217 156-216 (297)
420 PRK00421 murC UDP-N-acetylmura 26.4 2.1E+02 0.0045 26.9 6.6 65 152-216 6-77 (461)
421 PRK14690 molybdopterin biosynt 26.4 1.4E+02 0.003 28.3 5.4 84 125-215 168-269 (419)
422 PRK02255 putrescine carbamoylt 26.3 1.5E+02 0.0032 27.4 5.4 60 152-213 153-230 (338)
423 PLN02366 spermidine synthase 26.2 1.3E+02 0.0029 27.2 5.1 75 107-186 46-126 (308)
424 PRK00856 pyrB aspartate carbam 25.7 1.2E+02 0.0027 27.4 4.7 61 152-213 155-221 (305)
425 cd02010 TPP_ALS Thiamine pyrop 25.2 2.1E+02 0.0046 23.2 5.8 41 124-168 42-82 (177)
426 cd00755 YgdL_like Family of ac 25.2 73 0.0016 27.7 3.0 24 152-175 10-33 (231)
427 PRK06847 hypothetical protein; 25.2 1.3E+02 0.0029 26.8 4.9 35 152-186 3-38 (375)
428 TIGR01087 murD UDP-N-acetylmur 25.1 1.9E+02 0.0041 26.8 6.0 62 156-217 2-74 (433)
429 PRK11445 putative oxidoreducta 25.0 1E+02 0.0023 27.7 4.2 32 155-186 3-34 (351)
430 PRK06949 short chain dehydroge 25.0 1.5E+02 0.0032 24.7 4.9 42 152-193 8-51 (258)
431 TIGR03466 HpnA hopanoid-associ 24.9 99 0.0022 26.7 3.9 59 155-213 2-72 (328)
432 PRK09288 purT phosphoribosylgl 24.8 1.3E+02 0.0028 27.4 4.8 34 152-186 11-46 (395)
433 cd00762 NAD_bind_malic_enz NAD 24.7 1.9E+02 0.0041 25.8 5.6 63 152-214 24-115 (254)
434 KOG0273|consensus 24.6 1E+02 0.0022 30.0 4.0 40 85-124 403-448 (524)
435 KOG0455|consensus 24.5 70 0.0015 29.0 2.8 25 153-177 3-27 (364)
436 COG5009 MrcA Membrane carboxyp 24.5 61 0.0013 33.3 2.7 28 101-128 414-441 (797)
437 cd05313 NAD_bind_2_Glu_DH NAD( 24.5 1.3E+02 0.0029 26.6 4.6 24 152-175 37-60 (254)
438 PRK08703 short chain dehydroge 24.4 1.5E+02 0.0032 24.5 4.8 41 153-193 6-48 (239)
439 COG0421 SpeE Spermidine syntha 24.1 1.6E+02 0.0035 26.4 5.1 74 107-185 31-110 (282)
440 TIGR03693 ocin_ThiF_like putat 24.0 1E+02 0.0022 31.1 4.1 63 152-214 128-213 (637)
441 PRK10537 voltage-gated potassi 23.9 1.8E+02 0.0038 27.4 5.5 64 153-217 240-314 (393)
442 PRK00779 ornithine carbamoyltr 23.8 1.3E+02 0.0027 27.3 4.4 60 152-213 151-225 (304)
443 PF07865 DUF1652: Protein of u 23.7 1.2E+02 0.0026 21.6 3.4 31 107-137 26-56 (69)
444 PF00205 TPP_enzyme_M: Thiamin 23.6 92 0.002 23.9 3.1 60 152-212 11-84 (137)
445 PRK12829 short chain dehydroge 23.2 1.9E+02 0.0041 24.1 5.2 42 152-193 10-53 (264)
446 PRK08219 short chain dehydroge 23.2 1.7E+02 0.0036 23.7 4.8 39 154-192 4-43 (227)
447 TIGR03219 salicylate_mono sali 23.2 1.2E+02 0.0027 27.7 4.3 32 155-186 2-35 (414)
448 KOG0068|consensus 23.2 1.2E+02 0.0026 28.5 4.2 57 153-210 146-205 (406)
449 PRK12939 short chain dehydroge 23.1 1.8E+02 0.0038 24.0 5.0 42 152-193 6-49 (250)
450 PRK07454 short chain dehydroge 23.1 1.7E+02 0.0036 24.2 4.8 42 152-193 5-48 (241)
451 PRK14174 bifunctional 5,10-met 23.1 1.2E+02 0.0027 27.5 4.2 53 152-216 158-217 (295)
452 TIGR03201 dearomat_had 6-hydro 23.0 2.4E+02 0.0052 25.1 6.1 40 152-191 166-206 (349)
453 PRK07236 hypothetical protein; 22.9 1.5E+02 0.0033 26.9 4.8 34 152-186 5-40 (386)
454 PF03853 YjeF_N: YjeF-related 22.8 3.6E+02 0.0078 21.8 6.6 63 152-214 25-108 (169)
455 cd02003 TPP_IolD Thiamine pyro 22.7 2.1E+02 0.0046 23.8 5.4 37 126-166 44-80 (205)
456 PRK08267 short chain dehydroge 22.5 1.6E+02 0.0035 24.6 4.7 40 154-193 2-43 (260)
457 PRK06101 short chain dehydroge 22.5 1.5E+02 0.0032 24.7 4.4 38 155-192 3-42 (240)
458 PRK12810 gltD glutamate syntha 22.4 1.5E+02 0.0033 28.0 4.9 34 152-185 142-176 (471)
459 PRK06392 homoserine dehydrogen 22.4 1.4E+02 0.0029 27.4 4.4 21 155-175 2-22 (326)
460 PRK06057 short chain dehydroge 22.3 1.9E+02 0.004 24.2 5.0 41 152-192 6-48 (255)
461 PRK05884 short chain dehydroge 22.2 1.7E+02 0.0037 24.3 4.7 39 155-193 2-42 (223)
462 PRK09287 6-phosphogluconate de 22.0 98 0.0021 29.8 3.5 40 176-215 14-64 (459)
463 PRK10083 putative oxidoreducta 22.0 2.8E+02 0.006 24.2 6.2 64 152-215 160-238 (339)
464 KOG2711|consensus 21.9 2E+02 0.0044 27.0 5.3 66 152-217 20-117 (372)
465 PRK09186 flagellin modificatio 21.7 1.9E+02 0.0041 24.0 4.9 40 153-192 4-45 (256)
466 PRK05872 short chain dehydroge 21.7 1.9E+02 0.0042 25.1 5.1 41 153-193 9-51 (296)
467 TIGR01963 PHB_DH 3-hydroxybuty 21.6 1.6E+02 0.0034 24.4 4.4 40 154-193 2-43 (255)
468 PRK06182 short chain dehydroge 21.5 1.9E+02 0.004 24.6 4.9 41 153-193 3-45 (273)
469 COG0190 FolD 5,10-methylene-te 21.4 2.6E+02 0.0056 25.4 5.8 54 152-217 155-211 (283)
470 PF10881 DUF2726: Protein of u 21.2 1.1E+02 0.0023 23.5 3.0 21 106-126 56-76 (126)
471 TIGR03589 PseB UDP-N-acetylglu 21.1 1.9E+02 0.0042 25.6 5.1 62 153-214 4-83 (324)
472 PRK07333 2-octaprenyl-6-methox 21.1 1.1E+02 0.0024 27.6 3.6 32 155-186 3-37 (403)
473 PRK07774 short chain dehydroge 21.0 2.1E+02 0.0045 23.6 5.0 40 153-192 6-47 (250)
474 cd02006 TPP_Gcl Thiamine pyrop 21.0 2.1E+02 0.0045 23.7 5.0 37 128-168 55-91 (202)
475 PRK09897 hypothetical protein; 21.0 1.4E+02 0.0031 29.2 4.5 32 154-185 2-36 (534)
476 PRK08265 short chain dehydroge 20.9 2E+02 0.0044 24.3 5.0 41 153-193 6-48 (261)
477 PRK12429 3-hydroxybutyrate deh 20.8 1.9E+02 0.0041 23.9 4.7 41 153-193 4-46 (258)
478 TIGR00658 orni_carb_tr ornithi 20.8 2.4E+02 0.0052 25.4 5.6 60 152-213 147-224 (304)
479 PRK08264 short chain dehydroge 20.7 2E+02 0.0043 23.6 4.8 39 152-190 5-46 (238)
480 PF05262 Borrelia_P83: Borreli 20.7 1.3E+02 0.0029 29.3 4.1 58 85-165 361-418 (489)
481 PRK07074 short chain dehydroge 20.7 1.9E+02 0.0041 24.1 4.7 40 154-193 3-44 (257)
482 PRK06019 phosphoribosylaminoim 20.6 1.6E+02 0.0034 27.0 4.4 39 154-193 3-44 (372)
483 PRK07231 fabG 3-ketoacyl-(acyl 20.6 2E+02 0.0044 23.6 4.9 42 152-193 4-47 (251)
484 PRK05867 short chain dehydroge 20.5 2E+02 0.0044 24.0 4.9 40 153-192 9-50 (253)
485 PRK08217 fabG 3-ketoacyl-(acyl 20.4 2.1E+02 0.0046 23.4 4.9 40 153-192 5-46 (253)
486 PRK07102 short chain dehydroge 20.4 2E+02 0.0042 23.8 4.7 37 155-191 3-41 (243)
487 TIGR00417 speE spermidine synt 20.4 2.5E+02 0.0054 24.5 5.5 76 107-187 27-108 (270)
488 PRK14874 aspartate-semialdehyd 20.3 1.8E+02 0.0039 26.4 4.7 63 154-216 2-74 (334)
489 PRK12769 putative oxidoreducta 20.3 1.7E+02 0.0036 29.1 4.9 34 152-185 326-360 (654)
490 TIGR01408 Ube1 ubiquitin-activ 20.2 1.6E+02 0.0034 31.4 4.7 33 152-184 23-57 (1008)
491 PRK11863 N-acetyl-gamma-glutam 20.1 1.9E+02 0.0041 26.4 4.8 54 154-216 3-61 (313)
492 PRK06196 oxidoreductase; Provi 20.1 2E+02 0.0043 25.2 4.9 40 153-192 26-67 (315)
493 cd05188 MDR Medium chain reduc 20.0 3.4E+02 0.0074 22.2 6.1 64 152-215 134-211 (271)
494 PLN02383 aspartate semialdehyd 20.0 1.8E+02 0.004 26.7 4.7 66 152-217 6-81 (344)
No 1
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=100.00 E-value=2.5e-49 Score=356.40 Aligned_cols=192 Identities=30% Similarity=0.467 Sum_probs=167.6
Q ss_pred CCeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecCC
Q psy13395 18 PPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTD 97 (224)
Q Consensus 18 ~~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p~ 97 (224)
.+++|+++||+++++++++++++|++|..+++|++.+|+|..+.+++.++++++||++.++ .+++|+||+++||+
T Consensus 1 ~~~~Ls~~dV~~~~~~~~~i~~v~~af~~~~~g~~~~p~r~~~~~~~~~~~~~~mpa~~~~-----~~~~gvK~v~~~p~ 75 (313)
T PF02423_consen 1 TTRILSRSDVESLLTMDEAIDAVEEAFRAYSQGEAQQPPRIVLPFPDGDGRFLAMPAYLPG-----EPVAGVKWVSVFPG 75 (313)
T ss_dssp -CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEEEEEETTGTEEEEEEEEEETT-----CTEEEEEEEEEETT
T ss_pred CccccCHHHHHhhcCHHHHHHHHHHHHHHhhccCccCCCEEEeccCCcceEEEEEEEEeCC-----CcEEEEEEEEecCC
Confidence 3789999999999999999999999999999999999999999987557999999999997 67999999999999
Q ss_pred CCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCC
Q psy13395 98 NKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLK 177 (224)
Q Consensus 98 N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~ 177 (224)
|+++|||+++|+++|||++||+|+|+|||++||++||||+|++++|||+|+ ++++++|||+|.||++|++++..+||
T Consensus 76 N~~~glP~~~g~i~L~D~~TG~p~ai~dg~~lT~~RTaA~sala~~~La~~---~~~~l~viGaG~QA~~~~~a~~~~~~ 152 (313)
T PF02423_consen 76 NPKRGLPSIQGVILLFDPETGEPLAIMDGTWLTALRTAAVSALAARYLARP---DARTLGVIGAGVQARWHLRALAAVRP 152 (313)
T ss_dssp CGGGTSSSEEEEEEEEETTT--EEEEEESHHHHHHHHHHHHHHHHHHHS-T---T--EEEEE--SHHHHHHHHHHHHHS-
T ss_pred ccccCCCceeEEEEEEECCCCCEEEEecccchhhhHHHHHHHHHHHHhCcC---CCceEEEECCCHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred c---EEEeCCcchHHhhhhcc--CCC-------cccccccCcEEEEeccccc
Q psy13395 178 L---KKYNRGLTEGTVTGSTK--KGM-------ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 178 i---~v~~R~~~~a~~~a~~~--~g~-------~~~~v~~advvv~~~~~~~ 217 (224)
+ +||+|+++++++|+++. .++ ..+++.+||||+|+|.+..
T Consensus 153 i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~ 204 (313)
T PF02423_consen 153 IKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTT 204 (313)
T ss_dssp -SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SS
T ss_pred ceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCC
Confidence 7 99999999999999832 243 5788999999999999876
No 2
>PRK06823 ornithine cyclodeaminase; Validated
Probab=100.00 E-value=2.1e-48 Score=350.95 Aligned_cols=191 Identities=21% Similarity=0.286 Sum_probs=178.7
Q ss_pred CeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecCCC
Q psy13395 19 PLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDN 98 (224)
Q Consensus 19 ~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p~N 98 (224)
|++|+++||+++++++++|+++|++|+.+++|++.+|+|..+.++.+++.+++||||+++ .+.+|+||+++||+|
T Consensus 1 m~~l~~~~v~~~l~~~~~i~av~~a~~~~~~g~~~~P~r~~~~~~~~~~~~~~mpa~~~~-----~~~~g~K~v~~~p~N 75 (315)
T PRK06823 1 MKILNKQKILAKFDADRATLLLKEGFIAFSQGRVQMPPVQHLLFDQANGDCCIKSGYLQG-----DDQFVVKVSTGFYDN 75 (315)
T ss_pred CeecCHHHHHHhCCHHHHHHHHHHHHHHHhcCCCcCCCEEEeccCCCCceEEEEeeeeCC-----CCeEEEEEEeecCCC
Confidence 689999999999999999999999999999999999999999887667889999999987 568999999999999
Q ss_pred CCCCCCceEEEEEEEeCCCCcEEEEE-eCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCC
Q psy13395 99 KVKGLPSVLATVLLYNTDNGKLKVVM-EGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLK 177 (224)
Q Consensus 99 ~~~glP~~~g~i~L~D~~TG~p~All-Dg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~ 177 (224)
+.+|||+++|+++|||++||+|+|+| ||++||++||||+|+|+++||+|+ ++++|+|||+|.||++|++++..+|+
T Consensus 76 ~~~glP~~~g~v~l~d~~TG~p~Ail~d~~~lT~~RTaA~sala~~~La~~---d~~~l~iiG~G~qA~~~~~a~~~v~~ 152 (315)
T PRK06823 76 PAQGLPSNQGLMLAFSAKTGEPQALLLDEGWLTALRTALAGRIVARLLAPQ---HVSAIGIVGTGIQARMQLMYLKNVTD 152 (315)
T ss_pred ccCCCCCeeEEEEEEECCCCceEEEEcCCChHHHHHHHHHHHHHHHHhcCC---CCCEEEEECCcHHHHHHHHHHHhcCC
Confidence 99999999999999999999999997 999999999999999999999999 99999999999999999999999999
Q ss_pred c---EEEeCCcchHHhhhhcc--CCC-------cccccccCcEEEEeccccc
Q psy13395 178 L---KKYNRGLTEGTVTGSTK--KGM-------ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 178 i---~v~~R~~~~a~~~a~~~--~g~-------~~~~v~~advvv~~~~~~~ 217 (224)
+ +||||+++++++|++.. .++ ..+++++||||+|+|.+..
T Consensus 153 i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~ 204 (315)
T PRK06823 153 CRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE 204 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC
Confidence 7 99999999999999732 243 4678899999999998754
No 3
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=100.00 E-value=3.4e-47 Score=344.15 Aligned_cols=192 Identities=27% Similarity=0.397 Sum_probs=179.5
Q ss_pred CCeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecCC
Q psy13395 18 PPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTD 97 (224)
Q Consensus 18 ~~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p~ 97 (224)
+|+||+++||++++++.++++++|++|..+++|++.+|+|..+.++..++.+++|||++++ .+.+|+||++.+|+
T Consensus 1 ~~~~l~~~~v~~~l~~~~~i~~v~~a~~~~~~g~~~~P~r~~~~~~~~~~~~~~mpa~~~~-----~~~~g~K~v~~~p~ 75 (325)
T TIGR02371 1 ETLVLTQEEVESLLNMDDCMKAVEGAFRQEALGKVQMPPKMYLFFRRYNGDLRVMPAYLEE-----LEMAGVKCVNVHPG 75 (325)
T ss_pred CcEEeCHHHHHHhCCHHHHHHHHHHHHHHHhcCCCcCCCEEEeccCCCCCeEEEeeEeeCC-----CCeEEEEEEeecCC
Confidence 4789999999999999999999999999999999999999999886567899999999987 67899999999999
Q ss_pred CCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCC
Q psy13395 98 NKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLK 177 (224)
Q Consensus 98 N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~ 177 (224)
|+.+|||+++|+++|||++||+|+|+|||++||++||||+|+++++||+|+ ++++++|||+|.||++|++++..+++
T Consensus 76 N~~~glp~~~g~i~L~d~~tG~p~ai~d~~~lT~~RTaA~salaa~~La~~---~~~~lgiiG~G~qA~~~l~al~~~~~ 152 (325)
T TIGR02371 76 NPDRHLPTVMALIILVSPETGFPIALMDGTYITDMRTGAAGGVAAKYLARK---DSSVLGIIGAGRQAWTQLEALSRVFD 152 (325)
T ss_pred chhcCCCcceEEEEEeeCCCCCeEEEEeCcchhhHHHHHHHHHHHHHhCCC---CCCEEEEECCCHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999 99999999999999999999999998
Q ss_pred c---EEEeCCcchHHhhhhc--cCCC-------cccccccCcEEEEeccccc
Q psy13395 178 L---KKYNRGLTEGTVTGST--KKGM-------ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 178 i---~v~~R~~~~a~~~a~~--~~g~-------~~~~v~~advvv~~~~~~~ 217 (224)
+ +||+|++++++.|+++ +.|+ ..+++.+||||+++|.+..
T Consensus 153 ~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~ 204 (325)
T TIGR02371 153 LEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC
Confidence 6 9999999999999884 3342 5678889999999997654
No 4
>PRK07340 ornithine cyclodeaminase; Validated
Probab=100.00 E-value=1.3e-45 Score=331.07 Aligned_cols=189 Identities=24% Similarity=0.340 Sum_probs=175.7
Q ss_pred CCeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecCC
Q psy13395 18 PPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTD 97 (224)
Q Consensus 18 ~~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p~ 97 (224)
.|+||+++||+++|+++++++++|++|+.+++|++.+|+|..+.++ .++.+++||++.++ .+|+||++.||+
T Consensus 1 ~m~~l~~~~v~~~l~~~~~i~~v~~a~~~~~~g~~~~p~r~~~~~~-~~~~~~~mpa~~~~-------~~g~K~~~~~p~ 72 (304)
T PRK07340 1 TMPVLDAAETAALLPYPALADALAAALLDYAAGRIQSPERLVVPLQ-GGGVLLSMPASAAD-------LAITKLVTVCPG 72 (304)
T ss_pred CceEECHHHHHhhCCHHHHHHHHHHHHHHHhcCCCCCCCEEEEecC-CCCEEEEEeeccCC-------ccEEEEEEeCCC
Confidence 3789999999999999999999999999999999999999999874 56899999999653 799999999999
Q ss_pred CCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCC
Q psy13395 98 NKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLK 177 (224)
Q Consensus 98 N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~ 177 (224)
|+.+|||+++|+++|||++||.|+|+|||++||++||||+|++++++|+++ ++++++|||+|.||++|++++..+++
T Consensus 73 N~~~glp~~~g~i~l~d~~tG~p~a~~d~~~lT~~RTaA~sala~~~La~~---~~~~v~IiGaG~qa~~~~~al~~~~~ 149 (304)
T PRK07340 73 NAARGLPTIQGEVVVADAATGERLFLLDGPTVTGRRTAAVSLLAARTLAPA---PPGDLLLIGTGVQARAHLEAFAAGLP 149 (304)
T ss_pred CccCCCCcceEEEEEEECCCCcEEEEEcChhHHHHHHHHHHHHHHHHhCCC---CCCEEEEECCcHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999 99999999999999999999999998
Q ss_pred c---EEEeCCcchHHhhhhcc--CCC------cccccccCcEEEEeccccc
Q psy13395 178 L---KKYNRGLTEGTVTGSTK--KGM------ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 178 i---~v~~R~~~~a~~~a~~~--~g~------~~~~v~~advvv~~~~~~~ 217 (224)
+ +||||+++++++|+++. .++ ..+++.++||||++|.+.+
T Consensus 150 ~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~ 200 (304)
T PRK07340 150 VRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT 200 (304)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC
Confidence 5 99999999999999853 222 4567889999999998765
No 5
>PRK08618 ornithine cyclodeaminase; Validated
Probab=100.00 E-value=2.1e-45 Score=332.17 Aligned_cols=192 Identities=29% Similarity=0.411 Sum_probs=178.0
Q ss_pred CeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecCCC
Q psy13395 19 PLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDN 98 (224)
Q Consensus 19 ~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p~N 98 (224)
|+||+++||+++|++.++++++|++|..+++|++.+|+|..+.++.+++.+++||+++++ .+.+|+||+++||+|
T Consensus 1 m~~l~~~~v~~~l~~~~~i~~v~~a~~~~~~g~~~~p~r~~~~~~~~~~~~~~mp~~~~~-----~~~~g~K~~~~~p~n 75 (325)
T PRK08618 1 MLVLSAEDQKKLFNMNEAIEADKEALKAYSEGKTITPLRTNLPFPNENNTSLIMPGYAEG-----LEALGLKIVSVVPEN 75 (325)
T ss_pred CeEcCHHHHHHhcCHHHHHHHHHHHHHHHhCCCCCCCCEEEeccCCCCCcEEEeeeecCC-----CCeEEEEEEeecCCC
Confidence 689999999999999999999999999999999999999999886567899999999987 568999999999999
Q ss_pred CCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCCc
Q psy13395 99 KVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKL 178 (224)
Q Consensus 99 ~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~i 178 (224)
+.+|+|+++|+++|||++||+|+|+|||++||+|||||+|++++++|+++ ++++++|||+|.||++|++++..++++
T Consensus 76 ~~~glp~~~g~i~l~d~~tG~p~a~~d~~~lT~~RTaa~sala~~~la~~---~~~~v~iiGaG~~a~~~~~al~~~~~~ 152 (325)
T PRK08618 76 KKKGKPTIPGTVILSDFETGEVLAILDGTYLTQIRTGALSGVATKYLARE---DAKTLCLIGTGGQAKGQLEAVLAVRDI 152 (325)
T ss_pred cccCCCcceEEEEEEeCCCCceEEEEccchhhhhhHHHHHHHHHHHhcCC---CCcEEEEECCcHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999 999999999999999999999888875
Q ss_pred ---EEEeCCcchHHhhhhc---cCCC-------cccccccCcEEEEecccccc
Q psy13395 179 ---KKYNRGLTEGTVTGST---KKGM-------ATEDVITAKLIYDKYQAQHS 218 (224)
Q Consensus 179 ---~v~~R~~~~a~~~a~~---~~g~-------~~~~v~~advvv~~~~~~~~ 218 (224)
.||||+++++++|+++ ..++ ..+.+.++||||++|...|.
T Consensus 153 ~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~p 205 (325)
T PRK08618 153 ERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKTP 205 (325)
T ss_pred cEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCCc
Confidence 9999999999999973 2232 35567899999999998764
No 6
>PRK06199 ornithine cyclodeaminase; Validated
Probab=100.00 E-value=2.7e-45 Score=338.09 Aligned_cols=194 Identities=20% Similarity=0.259 Sum_probs=171.8
Q ss_pred CCCeeeCHHHHHh--cCChhHHHHHHHHHHHhhhcCCccCCce-----------------eEeeecCCCcEEEEeceeec
Q psy13395 17 QPPLFLSDEQVRD--LLDWESLVPAIESVMVKVSKKEVIQPAR-----------------LFMRIPEVNGVLLSMPGYIK 77 (224)
Q Consensus 17 ~~~~~Ls~~dV~~--ll~~~~~i~ale~af~~~~~g~~~~P~R-----------------~~~~~~~~~g~~~~Mpa~~~ 77 (224)
..|++|+++||++ +++++++|+++|++|..+++|++.+|+| ..++.+.+++.+++||+|++
T Consensus 7 ~~~~~L~~~~v~~~~~l~~~~~i~ave~a~~~~~~g~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~mpa~~~ 86 (379)
T PRK06199 7 IDFIYLSEQDMIRAGVTDMAACVDTMEEMFGLLYQGDYRMAGANNDSHGAMITFPENSPFPTMPKPTPDRRFMAMPAYLG 86 (379)
T ss_pred eEEEEECHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCccccccccCCcccccccCccCCccccccCCCCCeEEEeeeecC
Confidence 4699999999998 6999999999999999999998776443 23333334679999999998
Q ss_pred CCCCCCCCeEEEEEEeecCCCCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEE
Q psy13395 78 RTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLA 157 (224)
Q Consensus 78 ~~~~~~~~~~GvK~vs~~p~N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~ 157 (224)
+. .+.+|+||+++||+|+.+|+|+++|+++|||++||+|+|+|||++||++||||+|++++|+|+|+ ++++|+
T Consensus 87 ~~----~~~~gvK~v~~~p~N~~~glp~~~g~v~L~D~~TG~p~Ai~dg~~lTa~RTaA~salaa~~LAr~---da~~l~ 159 (379)
T PRK06199 87 GR----FRTAGVKWYGSNIANREKGLPRSILMFVLNDADTGAPLAIMSANLLSAYRTGAVPGVGARHLARK---DSKVVG 159 (379)
T ss_pred CC----CceeEEEEeccCCCccccCCCceeEEEEEeeCCCCceEEEEcCcchhhhHHHHHHHHHHHHhccC---CCCEEE
Confidence 61 26799999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEecCHhHHHHHHHHHHhCC-c---EEEeCCcchHHhhhhcc---C-CC--------cccccccCcEEEEeccccc
Q psy13395 158 IMGSGAQAYIHAKAFHASLK-L---KKYNRGLTEGTVTGSTK---K-GM--------ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 158 iiGaG~QA~~hl~a~~~v~~-i---~v~~R~~~~a~~~a~~~---~-g~--------~~~~v~~advvv~~~~~~~ 217 (224)
|||+|.||++|++++.++|| | +||||+++++++|+++. . |+ ..+++.+||||+|+|.+..
T Consensus 160 iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~~ 235 (379)
T PRK06199 160 LLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGET 235 (379)
T ss_pred EECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCCC
Confidence 99999999999999999997 7 99999999999999732 1 32 5677899999999997543
No 7
>PRK06046 alanine dehydrogenase; Validated
Probab=100.00 E-value=4.7e-44 Score=323.57 Aligned_cols=191 Identities=28% Similarity=0.440 Sum_probs=175.6
Q ss_pred CCeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecCC
Q psy13395 18 PPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTD 97 (224)
Q Consensus 18 ~~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p~ 97 (224)
.|+||+++||+++|+++++++++|++|..+++|++.+|+|..+.+++.+|.+++||+++++ .+.+|+||++.+|+
T Consensus 2 ~~~~l~~~~v~~~l~~~~~i~~~~~a~~~~~~g~~~~p~~~~~~~~~~~~~~~~mpa~~~~-----~~~~g~K~~~~~p~ 76 (326)
T PRK06046 2 ETLWLTQEDVKSLLDMDSAIEAVERAFRQHGLGKVQMPPKSYLYFEKYNGDLRTMPAYLEE-----LDIAGVKIVNVHPG 76 (326)
T ss_pred ccEEeCHHHHHHhCCHHHHHHHHHHHHHHHhcCCCcCCCeeEeccCCCCCeEEEeeEeeCC-----CCeEEEEEEeeCCC
Confidence 4899999999999999999999999999999999999999999887667899999999986 67899999999999
Q ss_pred CCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCC
Q psy13395 98 NKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLK 177 (224)
Q Consensus 98 N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~ 177 (224)
|+.+|+|+++|+|+|||++||+|+|+|||++||++||||+|++++++|+|+ ++++++|||+|.||++|++++..+++
T Consensus 77 N~~~glp~~~g~i~L~d~~tG~p~aild~~~lT~~RTaA~sala~~~La~~---~~~~vgiiG~G~qa~~h~~al~~~~~ 153 (326)
T PRK06046 77 NPDRGLPTVMAVIILNSPETGFPLAIMDGTYLTDMRTGAAGGVAAKYLARK---DSKVVGIIGAGNQARTQLLALSEVFD 153 (326)
T ss_pred CcccCCCceeEEEEEEeCCCCceEEEEcCccHHHHHHHHHHHHHHHHhCCC---CCCEEEEECCcHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999999999999 99999999999999999999998888
Q ss_pred c---EEEeCCcchHHhhhhcc---CCC-------cccccccCcEEEEeccccc
Q psy13395 178 L---KKYNRGLTEGTVTGSTK---KGM-------ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 178 i---~v~~R~~~~a~~~a~~~---~g~-------~~~~v~~advvv~~~~~~~ 217 (224)
+ +||+|+++++++|+++. .+. ..+.+ .+|||+++|....
T Consensus 154 i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l-~aDiVv~aTps~~ 205 (326)
T PRK06046 154 LEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEAC-DCDILVTTTPSRK 205 (326)
T ss_pred ceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHh-hCCEEEEecCCCC
Confidence 6 99999999999999742 242 23344 4999999998643
No 8
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-44 Score=325.07 Aligned_cols=192 Identities=31% Similarity=0.458 Sum_probs=178.3
Q ss_pred CCCeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecC
Q psy13395 17 QPPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFT 96 (224)
Q Consensus 17 ~~~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p 96 (224)
..|+||+++||++++.+.++++++|++|..+..+.+.+|++..+..++.++.+.+|+++.+. ...+|+||++++|
T Consensus 2 ~~~~~Ls~~ev~~l~~~~~~~~~v~~af~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~-----~~~~gvK~v~~~p 76 (330)
T COG2423 2 MMMLFLSEDEVRALLDMDGAVDAVEEAFRAQADGRVAMPPRLRLDPPSFSGDFRIMLMYLPG-----GDVAGVKIVGVHP 76 (330)
T ss_pred CcceecCHHHHHHHhcchHHHHHHHHHHHHhhcCcccCCccccccCccCCCccceeeeeccC-----CCeEEEEEecCcC
Confidence 36899999999999999999999999999999999999999998877778888888888876 5799999999999
Q ss_pred CCCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhC
Q psy13395 97 DNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASL 176 (224)
Q Consensus 97 ~N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~ 176 (224)
+|+.+|||+++|+++|||++||.|+++||+++||+|||||+|++|+|||||+ |+++|+|||+|.||++|++++..+|
T Consensus 77 ~N~~~glp~v~g~~~L~d~~TG~plal~d~~~lTa~RTaAasavAa~~LA~~---da~~laiIGaG~qA~~ql~a~~~v~ 153 (330)
T COG2423 77 DNPARGLPTVSGVIVLFDAETGEPLALLDATRLTALRTAAASAVAAKYLARK---DASTLAIIGAGAQARTQLEALKAVR 153 (330)
T ss_pred CccccCCCcceEEEEEEecCCCCEEEEecCccHHHHHHHHHHHHHHHHhccC---CCcEEEEECCcHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred Cc---EEEeCCcchHHhhhhc---cCCC-------cccccccCcEEEEecccc
Q psy13395 177 KL---KKYNRGLTEGTVTGST---KKGM-------ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 177 ~i---~v~~R~~~~a~~~a~~---~~g~-------~~~~v~~advvv~~~~~~ 216 (224)
++ +||+|+++++++|++. +.+. +.+++.+||||+|+|...
T Consensus 154 ~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~ 206 (330)
T COG2423 154 DIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPST 206 (330)
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCC
Confidence 97 9999999999999973 2221 578888999999999764
No 9
>PRK06141 ornithine cyclodeaminase; Validated
Probab=100.00 E-value=1e-43 Score=319.88 Aligned_cols=186 Identities=26% Similarity=0.389 Sum_probs=169.7
Q ss_pred CeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCC---CcEEEEeceeecCCCCCCCCeEEEEEEeec
Q psy13395 19 PLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEV---NGVLLSMPGYIKRTGPDGEDSLAIKVVTSF 95 (224)
Q Consensus 19 ~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~---~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~ 95 (224)
|+||+++||+++|+++++++++|++|+ +++.+|+|..+.++.. ++.+++||+|... +++|+||+++|
T Consensus 1 m~~l~~~~v~~~l~~~~~i~av~~a~~----~~~~~p~r~~~~~~~~~~~~~~~~~mp~~~~~------~~~g~K~~~~~ 70 (314)
T PRK06141 1 MLVIDAEQTRQALPFPALIEALRDAFA----RGCVMPVRHVHSLEVPGEAQATLLLMPAWNEG------RYIGVKAVTVF 70 (314)
T ss_pred CeecCHHHHHHhCCHHHHHHHHHHHHh----cCCcCCCceEEecCCCCCCCceEEEeeeecCC------CeeEEEEEeec
Confidence 689999999999999999999999996 3578999998887543 5899999999974 58999999999
Q ss_pred CCCCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHh
Q psy13395 96 TDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHAS 175 (224)
Q Consensus 96 p~N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v 175 (224)
|+|+.+|||+++|+++|||++||+|+|+|||++||+|||||+|+++++||+++ ++++++|||+|.||++|++++..+
T Consensus 71 p~N~~~glp~~~g~v~l~d~~tG~p~ai~d~~~lT~~RTaa~sala~~~La~~---~~~~v~iiG~G~~a~~~~~al~~~ 147 (314)
T PRK06141 71 PGNPARGLPGLHSTYLLFDGRTGEPLALVDGTELTARRTAAASALAASYLARK---DASRLLVVGTGRLASLLALAHASV 147 (314)
T ss_pred CCCCcCCCCceEEEEEEEECCCCCEEEEEcCcchhcchhHHHHHHHHHHhCCC---CCceEEEECCcHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999 999999999999999999999998
Q ss_pred CCc---EEEeCCcchHHhhhhcc--CC--C-----cccccccCcEEEEeccccc
Q psy13395 176 LKL---KKYNRGLTEGTVTGSTK--KG--M-----ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 176 ~~i---~v~~R~~~~a~~~a~~~--~g--~-----~~~~v~~advvv~~~~~~~ 217 (224)
+++ +||||++++++.|+++. .| + ..+++.+||||+++|...+
T Consensus 148 ~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~~ 201 (314)
T PRK06141 148 RPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLSTE 201 (314)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCCC
Confidence 885 99999999999999852 23 1 3567889999999998764
No 10
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=100.00 E-value=2e-43 Score=319.44 Aligned_cols=191 Identities=26% Similarity=0.414 Sum_probs=177.0
Q ss_pred CeeeCHHHHHhcCChh-HHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecCC
Q psy13395 19 PLFLSDEQVRDLLDWE-SLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTD 97 (224)
Q Consensus 19 ~~~Ls~~dV~~ll~~~-~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p~ 97 (224)
|++|+++||+++++++ ++|+++|++|..+++|++.+|+|..+.+|..++.+++||||+++ .+.+|+||++.||+
T Consensus 1 m~~l~~~~v~~ll~~~~~~i~~v~~a~~~~~~g~~~~p~r~~~~~~~~~~~~~~m~~~~~~-----~~~~g~K~~~~~p~ 75 (326)
T TIGR02992 1 ILILTEAELRECVPLDLDAIDCVENAFAALATGKVVMPPILRLDIPEHNGEVDVKTAYVPG-----LDGFAIKVSPGFFD 75 (326)
T ss_pred CeecCHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCCCCCEEEEecCCCCCeEEEeehhcCC-----CCceEEEEecccCC
Confidence 7899999999999998 79999999999999999999999999987667899999999987 57899999999999
Q ss_pred CCCCCCCceEEEEEEEeCCCCcEEEE-EeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhC
Q psy13395 98 NKVKGLPSVLATVLLYNTDNGKLKVV-MEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASL 176 (224)
Q Consensus 98 N~~~glP~~~g~i~L~D~~TG~p~Al-lDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~ 176 (224)
|+++|||+++|+++|||++||.|.++ +|+++||++||+|+|++++++|+++ ++++++|||+|.||++|++++..++
T Consensus 76 N~~~glp~~~g~i~l~d~~tG~~~ai~~d~~~lT~~RTaa~~~laa~~la~~---~~~~v~iiGaG~qA~~~~~al~~~~ 152 (326)
T TIGR02992 76 NPKLGLPSLNGMMVLLSSRTGLLQALLLDNGYLTDVRTAAAGAVAARHLARE---DSSVVAIFGAGMQARLQLEALTLVR 152 (326)
T ss_pred ccccCCCceeEEEEEEECCCCCceEEEcCCchHHHHHHHHHHHHHHHHhCCC---CCcEEEEECCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999 5999999999999999999999999 9999999999999999999999888
Q ss_pred Cc---EEEeCCcchHHhhhhcc---CCC-------cccccccCcEEEEeccccc
Q psy13395 177 KL---KKYNRGLTEGTVTGSTK---KGM-------ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 177 ~i---~v~~R~~~~a~~~a~~~---~g~-------~~~~v~~advvv~~~~~~~ 217 (224)
++ +||||+++++++|+++. .|+ ..+++.+|||||++|.+.+
T Consensus 153 ~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 153 DIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET 206 (326)
T ss_pred CccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC
Confidence 86 99999999999999742 243 3456889999999998754
No 11
>PRK07589 ornithine cyclodeaminase; Validated
Probab=100.00 E-value=6.8e-43 Score=318.60 Aligned_cols=184 Identities=26% Similarity=0.301 Sum_probs=165.9
Q ss_pred CeeeCHHHHHhcCC-------hhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEE
Q psy13395 19 PLFLSDEQVRDLLD-------WESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKV 91 (224)
Q Consensus 19 ~~~Ls~~dV~~ll~-------~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~ 91 (224)
.++|+++||..+|+ ..++++++|++|..++ ...+|+|..+.. +++.+++||+|.++ .+|+||
T Consensus 2 ~~~l~~~~v~~~l~~~~~~~~~~~~i~al~~a~~~~~--~~~~p~r~~~~~--~~~~~~~Mpa~~~~-------~~gvK~ 70 (346)
T PRK07589 2 VRFVSVDDMARLVRRVGVETFLRELADYLEADFRRWQ--EFDKSPRVASHS--PDGVIELMPTSDGE-------LYSFKY 70 (346)
T ss_pred CcEecHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcc--cccCCCeeeecC--CCCeEEEeeeccCC-------ceEEEE
Confidence 47999999999975 3578999999998654 467899998764 36889999999864 799999
Q ss_pred EeecCCCCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHH
Q psy13395 92 VTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA 171 (224)
Q Consensus 92 vs~~p~N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a 171 (224)
+++||+|+.+|+|+++|+++|||++||+|+|+|||++||+|||||+|+++++||+|+ ++++|+|||+|.||++|+++
T Consensus 71 v~~~p~N~~~glP~i~g~v~L~D~~TG~p~Alldg~~lT~~RTaA~sala~~~Lar~---da~~l~iiGaG~QA~~~l~a 147 (346)
T PRK07589 71 VNGHPKNTRRGLQTVMAFGVLADVDTGYPLLLSEMTLLTALRTAATSALAAKYLARP---DSRTMALIGNGAQSEFQALA 147 (346)
T ss_pred EeeCCCccccCCCceeEEEEEEECCCCCEEEEEcCccHHHHHHHHHHHHHHHHhccC---CCcEEEEECCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHhCCc---EEEeCCcchHHhhhhccC--CC-------cccccccCcEEEEecccc
Q psy13395 172 FHASLKL---KKYNRGLTEGTVTGSTKK--GM-------ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 172 ~~~v~~i---~v~~R~~~~a~~~a~~~~--g~-------~~~~v~~advvv~~~~~~ 216 (224)
+..+|++ +||||+++++++|+++.. ++ ..+++.+||||+|+|.+.
T Consensus 148 ~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~ 204 (346)
T PRK07589 148 FKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK 204 (346)
T ss_pred HHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC
Confidence 9999997 999999999999997432 43 578889999999999753
No 12
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=100.00 E-value=1.6e-42 Score=310.90 Aligned_cols=181 Identities=20% Similarity=0.270 Sum_probs=164.2
Q ss_pred CeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecCCC
Q psy13395 19 PLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDN 98 (224)
Q Consensus 19 ~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p~N 98 (224)
|+||+++||+++|+++++|+++|++|+.+++|++.+|+|..++. +++.+++||+|.++ .+++|+||++. ++|
T Consensus 1 m~~l~~~dv~~~l~~~~~i~ave~a~~~~~~g~~~~p~r~~~~~--~~~~~~~mpa~~~~-----~~~~g~K~~~~-~~~ 72 (301)
T PRK06407 1 MYYISEDDVLRNLNMKECIGALREAFEEYGAGRANSSTRVRTFS--PGHVLNTMPAYMEK-----YHIAGLKTYIA-GRN 72 (301)
T ss_pred CeecCHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCCCceEEec--CCCcEEEeeEecCC-----CCeeEEEEEec-CCC
Confidence 68999999999999999999999999999999999999998765 36789999999986 67899999885 333
Q ss_pred CCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCCc
Q psy13395 99 KVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKL 178 (224)
Q Consensus 99 ~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~i 178 (224)
.++++++|||++||+|+|+||+++||++||||+|++|+++|+ + ++++|+|||+|.||++|++++..+|++
T Consensus 73 ------~~~g~v~L~d~~TG~p~Almd~~~lT~~RTaA~salaa~~l~-~---da~~l~iiGaG~QA~~~~~a~~~v~~i 142 (301)
T PRK06407 73 ------GARFVVLLFDVNNPELVAIFEANRLGQIRTGAVTAYATSILH-K---NVENFTIIGSGFQAETQLEGMASVYNP 142 (301)
T ss_pred ------CccEEEEEEECCCCCEEEEEccchHHHHHHHHHHHHHHHHhh-c---CCcEEEEECCcHHHHHHHHHHHhcCCC
Confidence 377999999999999999999999999999999999999885 8 899999999999999999999999997
Q ss_pred ---EEEeCCcchHHhhhhcc---CCC-------cccccccCcEEEEeccccc
Q psy13395 179 ---KKYNRGLTEGTVTGSTK---KGM-------ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 179 ---~v~~R~~~~a~~~a~~~---~g~-------~~~~v~~advvv~~~~~~~ 217 (224)
+||||+++++++|+++. .|+ ..+++.+||||+|+|.+.+
T Consensus 143 ~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~ 194 (301)
T PRK06407 143 KRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT 194 (301)
T ss_pred CEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence 99999999999999742 243 5788899999999999765
No 13
>PRK08291 ectoine utilization protein EutC; Validated
Probab=100.00 E-value=1.2e-41 Score=308.12 Aligned_cols=192 Identities=26% Similarity=0.402 Sum_probs=177.3
Q ss_pred CCeeeCHHHHHhcCChh-HHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecC
Q psy13395 18 PPLFLSDEQVRDLLDWE-SLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFT 96 (224)
Q Consensus 18 ~~~~Ls~~dV~~ll~~~-~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p 96 (224)
+|++|+++||++++++. ++|+++|++|+.+++|++.+|+|..+.++.+++.+++||+|.++ .+++|+||++.||
T Consensus 3 ~m~~l~~~~v~~~l~~~~~~i~~v~~a~~~~~~g~~~~p~r~~~~~~~~~~~~~~mp~~~~~-----~~~~g~K~~~~~~ 77 (330)
T PRK08291 3 PMTILTEAELRALVPLDLDAIDCVEAAFAALATGAVAMPPILRLDIPEHRGEVDVKTAYIPG-----LDSFAIKVSPGFF 77 (330)
T ss_pred ceEEeCHHHHHHHcCchHHHHHHHHHHHHHHhcCCCcCCCEEEeccCCCCCcEEEeecccCC-----CCeeEEEeccCCC
Confidence 58999999999999997 79999999999999999999999999887667899999999987 6789999999999
Q ss_pred CCCCCCCCceEEEEEEEeCCCCcEEEE-EeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHh
Q psy13395 97 DNKVKGLPSVLATVLLYNTDNGKLKVV-MEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHAS 175 (224)
Q Consensus 97 ~N~~~glP~~~g~i~L~D~~TG~p~Al-lDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v 175 (224)
+|+++|||+++|+++|||++||.|.++ +|++.||++||+|+|++++++|+++ ++++++|||+|.||++|+.++..+
T Consensus 78 ~N~~~glp~~~g~i~l~d~~tG~~~ai~~d~~~lt~~rT~a~~~~a~~~la~~---~~~~v~IiGaG~~a~~~~~al~~~ 154 (330)
T PRK08291 78 DNPKLGLPSLNGLMVVLSARTGLVEALLLDNGYLTDVRTAAAGAVAARHLARE---DASRAAVIGAGEQARLQLEALTLV 154 (330)
T ss_pred CccccCCCcceEEEEEEeCCCCceEEEEcCCchHHHHHHHHHHHHHHHHhCCC---CCCEEEEECCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999 5999999999999999999999999 999999999999999999999988
Q ss_pred CCc---EEEeCCcchHHhhhhcc---CCC-------cccccccCcEEEEeccccc
Q psy13395 176 LKL---KKYNRGLTEGTVTGSTK---KGM-------ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 176 ~~i---~v~~R~~~~a~~~a~~~---~g~-------~~~~v~~advvv~~~~~~~ 217 (224)
+++ .||||+++++++|+++. .|+ ..+++.++||||++|.+++
T Consensus 155 ~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~ 209 (330)
T PRK08291 155 RPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE 209 (330)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC
Confidence 775 99999999999999842 243 2467889999999998865
No 14
>KOG3007|consensus
Probab=99.97 E-value=1.5e-31 Score=233.67 Aligned_cols=194 Identities=26% Similarity=0.278 Sum_probs=168.3
Q ss_pred CCCCeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeec------CCCcEEEEeceeecCCCCCCCCeEEE
Q psy13395 16 NQPPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIP------EVNGVLLSMPGYIKRTGPDGEDSLAI 89 (224)
Q Consensus 16 ~~~~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~------~~~g~~~~Mpa~~~~~~~~~~~~~Gv 89 (224)
+.-+.||+.+++...|.+..+|..+++-|...+-- ...|.|...++. ...+.+++||+|.++.. ..+.|+
T Consensus 2 s~ip~flsaeef~s~lss~tLIn~lle~~~~n~~~-~~~e~rlnypv~~~~pss~~~n~ll~MP~ws~~~s---~k~Lgv 77 (333)
T KOG3007|consen 2 SSIPTFLSAEEFYSNLSSQTLINSLLELHESNRLY-QNHEIRLNYPVKKLDPSSADSNSLLFMPVWSKDFS---IKILGV 77 (333)
T ss_pred CcccccccHHHHHhhcccHHHHHHHHHHhhhhccc-cCCcccccccccccCCccccCCceEEEeeeccccc---cchhhe
Confidence 34567999999999999999999999998876321 234445444432 24568999999998622 478999
Q ss_pred EEEeecCCCCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHH
Q psy13395 90 KVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHA 169 (224)
Q Consensus 90 K~vs~~p~N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl 169 (224)
|.+++||+|...++|.+++.++||++.||..+|.|||+.||..||+++|+++.++|.++ ++..+.|||+|.||+||+
T Consensus 78 klvt~fp~ni~~~lPs~~~~yllfeattgt~LatmdgnvitlyRtasvSalask~l~~~---dS~vL~i~GsG~qA~~hi 154 (333)
T KOG3007|consen 78 KLVTNFPGNINVILPSTGKLYLLFEATTGTALATMDGNVITLYRTASVSALASKRLENP---DSCVLTIFGSGLQAFWHI 154 (333)
T ss_pred eceeecCCcccccCCCcCceEEEEcCCCcchhhhcccceeeeeehhhhhhhhhhhcCCC---CceEEEEEcccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHhCC-c---EEEeCCcchHHhhhhcc-------------CCCcccccccCcEEEEecccc
Q psy13395 170 KAFHASLK-L---KKYNRGLTEGTVTGSTK-------------KGMATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 170 ~a~~~v~~-i---~v~~R~~~~a~~~a~~~-------------~g~~~~~v~~advvv~~~~~~ 216 (224)
.....++| + +||||+.++|++|+++. .....++|..+|||+++|-+-
T Consensus 155 ~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atlst 218 (333)
T KOG3007|consen 155 YIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLST 218 (333)
T ss_pred HHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEeccccC
Confidence 99999999 5 99999999999999831 123789999999999998654
No 15
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.27 E-value=1.7e-06 Score=68.94 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=54.9
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccCC--C-------cccccccCcEEEEecccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKKG--M-------ATEDVITAKLIYDKYQAQHS 218 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~g--~-------~~~~v~~advvv~~~~~~~~ 218 (224)
..++++|||+|..|+.-+.++...-. +.|+||+.+++++|++...+ + ..+.+.++||||++|...+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 68999999999999999999988743 59999999999999985422 1 34556799999999998764
No 16
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.18 E-value=6.5e-06 Score=73.07 Aligned_cols=89 Identities=17% Similarity=0.090 Sum_probs=68.9
Q ss_pred ccchhhhhhhhhHHhhhh--hc-cCCCCCCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccCC---C
Q psy13395 127 TEITKWRTAAASVVATKH--LF-GRSGDKDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKKG---M 198 (224)
Q Consensus 127 ~~lT~~RTaA~Salaa~~--La-r~~~~~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~g---~ 198 (224)
+.+++.+|-+.+.+.+-. +. .. ..++++|+|+|.+|+..++++...- .+.|+||+.+++++++++... +
T Consensus 97 g~l~G~NTD~~G~~~~l~~~~~~~~---~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~ 173 (278)
T PRK00258 97 GRLIGDNTDGIGFVRALEERLGVDL---KGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKA 173 (278)
T ss_pred CEEEEEcccHHHHHHHHHhccCCCC---CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccce
Confidence 468889999999887742 32 23 5678999999999999999998654 249999999999999874321 1
Q ss_pred -----cccccccCcEEEEecccccc
Q psy13395 199 -----ATEDVITAKLIYDKYQAQHS 218 (224)
Q Consensus 199 -----~~~~v~~advvv~~~~~~~~ 218 (224)
..+.+.++||||.+|.....
T Consensus 174 ~~~~~~~~~~~~~DivInaTp~g~~ 198 (278)
T PRK00258 174 ELDLELQEELADFDLIINATSAGMS 198 (278)
T ss_pred eecccchhccccCCEEEECCcCCCC
Confidence 13566789999999998753
No 17
>PLN00203 glutamyl-tRNA reductase
Probab=98.18 E-value=2.5e-06 Score=82.28 Aligned_cols=89 Identities=12% Similarity=0.072 Sum_probs=65.2
Q ss_pred hhhhhhhhhHHhh-hhhccCCCC----CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccCCC----
Q psy13395 130 TKWRTAAASVVAT-KHLFGRSGD----KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKKGM---- 198 (224)
Q Consensus 130 T~~RTaA~Salaa-~~Lar~~~~----~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~g~---- 198 (224)
|++-++++|...+ -.|+.+... ..++++|||+|.||+.+++.+...-. +.||||++++++.|++...+.
T Consensus 238 T~I~~~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~ 317 (519)
T PLN00203 238 TNIASGAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIY 317 (519)
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEe
Confidence 6666677776522 234432221 37899999999999999999886432 499999999999999753221
Q ss_pred -----cccccccCcEEEEecccccc
Q psy13395 199 -----ATEDVITAKLIYDKYQAQHS 218 (224)
Q Consensus 199 -----~~~~v~~advvv~~~~~~~~ 218 (224)
..+.+.++||||++|.+.|.
T Consensus 318 ~~~~dl~~al~~aDVVIsAT~s~~p 342 (519)
T PLN00203 318 KPLDEMLACAAEADVVFTSTSSETP 342 (519)
T ss_pred ecHhhHHHHHhcCCEEEEccCCCCC
Confidence 34667899999999988763
No 18
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.07 E-value=7.1e-06 Score=77.02 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=58.5
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccCCC------cccccccCcEEEEeccccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKKGM------ATEDVITAKLIYDKYQAQHSN 219 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~g~------~~~~v~~advvv~~~~~~~~~ 219 (224)
..++++|||+|.++.--++++..-- .|.|.||+.++|+.||++..+- ..+.+.++||||++|++.|..
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~i 252 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPI 252 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccc
Confidence 6889999999999999999988864 2599999999999999965432 577888999999999999864
No 19
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.96 E-value=1.8e-05 Score=74.24 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=54.3
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccC--CC----cccccccCcEEEEecccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKK--GM----ATEDVITAKLIYDKYQAQHS 218 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~--g~----~~~~v~~advvv~~~~~~~~ 218 (224)
...+++|||+|.+|+.+++.+...- .+.+|+|+.++++.|+++.. .+ ..+.+.++||||++|++.+.
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~ 253 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHP 253 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCc
Confidence 5789999999999999999998742 24999999999998987532 12 34667899999999987664
No 20
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.94 E-value=1.9e-05 Score=74.32 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=55.8
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccC-C--C----cccccccCcEEEEecccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKK-G--M----ATEDVITAKLIYDKYQAQHS 218 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~-g--~----~~~~v~~advvv~~~~~~~~ 218 (224)
..++++|||+|.+|+.-++.+...-. |.|+||+.++++.|++... + . ..+.+.++||||++|++.|.
T Consensus 180 ~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 180 SSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEY 255 (414)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCe
Confidence 56899999999999999999987542 5999999999999998642 2 1 25667899999999999875
No 21
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.92 E-value=2e-05 Score=71.09 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=54.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccCC--C----cccccccCcEEEEecccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKKG--M----ATEDVITAKLIYDKYQAQHS 218 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~g--~----~~~~v~~advvv~~~~~~~~ 218 (224)
...+++|||+|.+|+.+++.+.... .+.+++|++++++.|+++... + ..+.+.++||||++|++.+.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~ 251 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY 251 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch
Confidence 5789999999999999999988732 349999999999999886322 1 24567889999999998764
No 22
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.79 E-value=5.1e-05 Score=71.29 Aligned_cols=67 Identities=19% Similarity=0.251 Sum_probs=53.9
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccCC--C----cccccccCcEEEEecccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKKG--M----ATEDVITAKLIYDKYQAQHS 218 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~g--~----~~~~v~~advvv~~~~~~~~ 218 (224)
...+++|||+|.+|+..++.+...- .+.+|+|++++++.|++...+ + ..+.+.++||||++|++.|.
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~ 255 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHP 255 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCc
Confidence 6789999999999999999987643 248999999999999875321 1 34567899999999998764
No 23
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.67 E-value=0.0001 Score=58.74 Aligned_cols=67 Identities=21% Similarity=0.145 Sum_probs=53.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-C-cEEEeCCcchHHhhhhccCC------C--cccccccCcEEEEecccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-K-LKKYNRGLTEGTVTGSTKKG------M--ATEDVITAKLIYDKYQAQHS 218 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~-i~v~~R~~~~a~~~a~~~~g------~--~~~~v~~advvv~~~~~~~~ 218 (224)
+.++++|||+|.+|+.+++.+.... . +.+|+|++++++++++.... . ..+.+.++|+||.++....-
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~ 94 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMK 94 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCC
Confidence 5789999999999999999998863 3 49999999999888764211 1 23447899999999988653
No 24
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.59 E-value=0.00021 Score=63.09 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=62.2
Q ss_pred cchhhhhhhhhHHhh-hhh-ccCCCCCCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC--C-----
Q psy13395 128 EITKWRTAAASVVAT-KHL-FGRSGDKDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK--G----- 197 (224)
Q Consensus 128 ~lT~~RTaA~Salaa-~~L-ar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~--g----- 197 (224)
.+++..|-..+.+.+ +.. ... +.++++|+|+|.+|+..+.++...- .+.+|+|+++++++++++.. +
T Consensus 93 ~l~g~NTD~~G~~~~l~~~~~~~---~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~ 169 (270)
T TIGR00507 93 KLVGYNTDGIGLVSDLERLIPLR---PNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAF 169 (270)
T ss_pred EEEEEcCCHHHHHHHHHhcCCCc---cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEe
Confidence 566677777776655 221 223 5789999999999999999988643 24999999999999887421 2
Q ss_pred -CcccccccCcEEEEecccc
Q psy13395 198 -MATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 198 -~~~~~v~~advvv~~~~~~ 216 (224)
.......++||||.+|...
T Consensus 170 ~~~~~~~~~~DivInatp~g 189 (270)
T TIGR00507 170 SMDELPLHRVDLIINATSAG 189 (270)
T ss_pred chhhhcccCccEEEECCCCC
Confidence 1122335799999999875
No 25
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.55 E-value=0.00014 Score=53.67 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=49.2
Q ss_pred EEEEEecCHhHHHHHHHHHHhC----CcE-EEeCCcchHHhhhhccC----C-CcccccccCcEEEEeccccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL----KLK-KYNRGLTEGTVTGSTKK----G-MATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~----~i~-v~~R~~~~a~~~a~~~~----g-~~~~~v~~advvv~~~~~~~ 217 (224)
+++|||+|.+|...++.+.... .+. +++|+++++++++++.. . -..+.+.++||||-+...|+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~ 73 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQ 73 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGG
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHH
Confidence 5899999999999999998885 244 44999999999987542 1 25677778999999887765
No 26
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.52 E-value=0.00013 Score=63.67 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=50.2
Q ss_pred EEEEEecCHhHHHHHHHHHHhC-Cc---EEEeCCcchHHhhhhccCCC-----cccccccCcEEEEeccccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL-KL---KKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~-~i---~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~~ 217 (224)
+++|||+|.+|...++.+.... ++ .+|+|++++++.|++...+. ..+.+.++||||.++..|+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~ 73 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQI 73 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHH
Confidence 5899999999999999998753 22 79999999999988753222 3345679999999998754
No 27
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.50 E-value=0.00015 Score=59.24 Aligned_cols=62 Identities=11% Similarity=0.186 Sum_probs=48.4
Q ss_pred cEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc---CCCcccccccCcEEEEeccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK---KGMATEDVITAKLIYDKYQA 215 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~---~g~~~~~v~~advvv~~~~~ 215 (224)
.++++||.|.+|....+.+... +++.+|||+++++++|.+.. .....+.+.++|+|++....
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~ 67 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPD 67 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSS
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeeccc
Confidence 5799999999999999998764 45699999999999998742 24467778899999997654
No 28
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.38 E-value=0.0006 Score=56.92 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=50.9
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc---CCC------------cccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK---KGM------------ATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~---~g~------------~~~~v~~advvv~~~~ 214 (224)
..++++|+|+ |.+|+..++.+...- .+.+++|+.++++.+++.. .+. ..+.+.++||||++|.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~ 106 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGA 106 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCC
Confidence 4578999985 999999999887643 2489999999998887632 111 1356789999999998
Q ss_pred ccc
Q psy13395 215 AQH 217 (224)
Q Consensus 215 ~~~ 217 (224)
+..
T Consensus 107 ~g~ 109 (194)
T cd01078 107 AGV 109 (194)
T ss_pred CCc
Confidence 766
No 29
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.24 E-value=0.00063 Score=60.82 Aligned_cols=65 Identities=9% Similarity=0.044 Sum_probs=51.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccC---C-C-------cccccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKK---G-M-------ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~---g-~-------~~~~v~~advvv~~~~~~ 216 (224)
..++++|||+|..|++.+.++.... .|.|+||+.++++.|++... . . ..+.+.++||||.+|...
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 5689999999999999999998754 25999999999999987421 1 1 133567899999998765
No 30
>PRK07680 late competence protein ComER; Validated
Probab=97.22 E-value=0.00044 Score=60.91 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=49.9
Q ss_pred EEEEEecCHhHHHHHHHHHHhC-----CcEEEeCCcchHHhhhhccCCC-----cccccccCcEEEEeccccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL-----KLKKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~-----~i~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~~ 217 (224)
+++|||+|.+|...++.+.... .+.+|+|++++++.++++..|+ ..+.+.++|+||.++..+.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~ 74 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLD 74 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHH
Confidence 5899999999999999988764 2499999999998887643343 2345779999999987654
No 31
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.22 E-value=0.00067 Score=60.53 Aligned_cols=66 Identities=12% Similarity=0.066 Sum_probs=51.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccC--C----Cc-----ccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKK--G----MA-----TEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~--g----~~-----~~~v~~advvv~~~~~~~ 217 (224)
..++++|||+|..|+.-+.++...- .+.|+||++++++.|+++.. + +. .+.+.++||||.+|....
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~ 202 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV 202 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence 4578999999999999999988754 25999999999999987421 1 11 134578999999998643
No 32
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.08 E-value=0.0014 Score=47.99 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=28.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeC
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNR 183 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R 183 (224)
..++++|+|+|.||+.+++++..... +.+|+|
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 57899999999999999999999743 499998
No 33
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.99 E-value=0.0013 Score=58.51 Aligned_cols=63 Identities=8% Similarity=0.074 Sum_probs=49.6
Q ss_pred cEEEEEecCHhHHHHHHHHHHhC---C--cEEEeCCcchHHhhhhccCCC-----cccccccCcEEEEeccccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASL---K--LKKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~---~--i~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~~ 217 (224)
.++++||+|.+|..-++.+...- + +.+|+|++++++.+.++. |+ ..+.+.++||||.+...|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~-g~~~~~~~~e~~~~aDiIiLavkP~~ 75 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY-GITITTNNNEVANSADILILSIKPDL 75 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc-CcEEeCCcHHHHhhCCEEEEEeChHH
Confidence 47999999999999999998642 2 499999999988887632 32 3345679999999987664
No 34
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.96 E-value=0.0017 Score=58.27 Aligned_cols=64 Identities=20% Similarity=0.160 Sum_probs=50.8
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccC--C-----C--c-ccccccCcEEEEecccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKK--G-----M--A-TEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~--g-----~--~-~~~v~~advvv~~~~~~ 216 (224)
.++++|+|+|.-|++-+.++...-. |.|+||+.+++++|++... + . . .+...++||||.+|..-
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 5889999999999999999999874 6999999999999998422 1 1 1 12222699999999753
No 35
>PLN02688 pyrroline-5-carboxylate reductase
Probab=96.93 E-value=0.0016 Score=56.72 Aligned_cols=61 Identities=23% Similarity=0.229 Sum_probs=47.7
Q ss_pred EEEEEecCHhHHHHHHHHHHhC-----CcEEE-eCCcchHHhhhhccCCC-----cccccccCcEEEEeccccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL-----KLKKY-NRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~-----~i~v~-~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~~ 217 (224)
++++||+|.+|..-++.+.... .+.+| +|++++++.+.+. |+ ..+.+.++||||.++..++
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~--g~~~~~~~~e~~~~aDvVil~v~~~~ 73 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSL--GVKTAASNTEVVKSSDVIILAVKPQV 73 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHc--CCEEeCChHHHHhcCCEEEEEECcHH
Confidence 5899999999999999998753 24777 9999998887652 43 3455679999999986553
No 36
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=96.92 E-value=0.00072 Score=53.83 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=46.2
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-Cc-EEEeCCcchHHhhhhccCCC----cccccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-KL-KKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i-~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~ 216 (224)
...+++|||+|..|....+++...- +| -||+|+.++++.++....+. ..+.+..||||+-++...
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd 79 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD 79 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH
Confidence 5679999999999999999998864 45 99999999998888753322 456788999999887643
No 37
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.88 E-value=0.002 Score=57.19 Aligned_cols=64 Identities=19% Similarity=0.087 Sum_probs=48.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh-CC--c-EEEeCCcchHHhhhhccCC---C--cccccccCcEEEEeccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS-LK--L-KKYNRGLTEGTVTGSTKKG---M--ATEDVITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~--i-~v~~R~~~~a~~~a~~~~g---~--~~~~v~~advvv~~~~~ 215 (224)
...+++|||+|.+|+.|++.+... .. + .||+|++++++++++.... + ..+-+.+.|+||.++..
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~ 77 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPA 77 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCc
Confidence 467899999999999999999874 33 3 7999999999998875321 1 23334578999988764
No 38
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.86 E-value=0.0024 Score=48.53 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=47.8
Q ss_pred EEEEEecCHhHHHHHHHHHHhCC---c-EEEeCCcchHHhhhhccCCC-----cccccc--cCcEEEEecccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASLK---L-KKYNRGLTEGTVTGSTKKGM-----ATEDVI--TAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~~---i-~v~~R~~~~a~~~a~~~~g~-----~~~~v~--~advvv~~~~~~ 216 (224)
+++|||+|..++.|++++....+ + -+|++++++++.|+++. |+ ..+-+. +.|+|+-+|...
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY-GIPVYTDLEELLADEDVDAVIIATPPS 73 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT-TSEEESSHHHHHHHTTESEEEEESSGG
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh-cccchhHHHHHHHhhcCCEEEEecCCc
Confidence 68999999999999999999865 2 89999999999997642 22 223333 689999888653
No 39
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.85 E-value=0.0021 Score=57.53 Aligned_cols=63 Identities=10% Similarity=0.080 Sum_probs=50.3
Q ss_pred cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc---CCCcccccccCcEEEEecccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK---KGMATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~---~g~~~~~v~~advvv~~~~~~ 216 (224)
.+++|||+|.+|....+.+...- ++.+|||++++.+.|.+.. .....+.+.++|+||.+...+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~ 68 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNG 68 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCH
Confidence 36999999999999999987653 4699999999999987642 122456778999999987664
No 40
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.73 E-value=0.0023 Score=57.57 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=47.2
Q ss_pred EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC----CCcccccccCcEEEEecc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK----GMATEDVITAKLIYDKYQ 214 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~----g~~~~~v~~advvv~~~~ 214 (224)
++++||.|.++.-...-+...- ++.+|||+++++..+..... ..+.+++.++||||+-..
T Consensus 2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~ 66 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLP 66 (286)
T ss_pred eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecC
Confidence 6899999999999888877754 35999999999655554322 236789999999998653
No 41
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.70 E-value=0.0029 Score=55.18 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=49.0
Q ss_pred cEEEEEecCHhHHHHHHHHHHhC----CcEEEeCCcchHHhhhhccCCC-----cccccccCcEEEEeccccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASL----KLKKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~----~i~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~~ 217 (224)
.+++|||+|.+|...++.+.... .+.+|+|++++++.+.+.. |+ ..+.+.++|+||-++..++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~-g~~~~~~~~~~~~~advVil~v~~~~ 74 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY-GVRAATDNQEAAQEADVVVLAVKPQV 74 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc-CCeecCChHHHHhcCCEEEEEcCHHH
Confidence 46999999999999999988753 2489999999988887642 22 3445679999999886653
No 42
>KOG0409|consensus
Probab=96.65 E-value=0.0024 Score=57.85 Aligned_cols=63 Identities=10% Similarity=0.110 Sum_probs=52.2
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc---CCCcccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK---KGMATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~---~g~~~~~v~~advvv~~~~ 214 (224)
...+++.||.|.++......+... +++.||||+.++.+.|.+.. ...+.|-+.++|+|||-..
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~ 100 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVP 100 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcC
Confidence 478999999999999999887776 45699999999999999842 2446777779999998654
No 43
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.61 E-value=0.0032 Score=51.18 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=47.1
Q ss_pred EEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccC------CC-----------cccccccCcEEEEecccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKK------GM-----------ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~------g~-----------~~~~v~~advvv~~~~~~ 216 (224)
+++|||+|..|.+....+..-.. +.+|.|+++..+.+.+.+. ++ ..+++.+||+||-++-+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 58999999999988877766553 4999999999888876322 11 367889999999998876
Q ss_pred c
Q psy13395 217 H 217 (224)
Q Consensus 217 ~ 217 (224)
.
T Consensus 81 ~ 81 (157)
T PF01210_consen 81 A 81 (157)
T ss_dssp G
T ss_pred H
Confidence 4
No 44
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.61 E-value=0.0039 Score=55.12 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=48.8
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhC-----CcEEEeCCcc-hHHhhhhccCCC-----cccccccCcEEEEeccccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASL-----KLKKYNRGLT-EGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~-----~i~v~~R~~~-~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~~ 217 (224)
..++++||+|.+|..-++.+..-. .+.+|+|+++ +++.|+... |+ ..+.+.++||||.+...|+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~-g~~~~~~~~e~~~~aDvVilav~p~~ 77 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY-GVKGTHNKKELLTDANILFLAMKPKD 77 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc-CceEeCCHHHHHhcCCEEEEEeCHHH
Confidence 458999999999999999998752 2499999874 567776532 22 3455679999999988765
No 45
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.57 E-value=0.0054 Score=54.70 Aligned_cols=65 Identities=25% Similarity=0.263 Sum_probs=49.9
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccCCCc-cccc--ccCcEEEEecccccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKKGMA-TEDV--ITAKLIYDKYQAQHS 218 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~g~~-~~~v--~~advvv~~~~~~~~ 218 (224)
.++++|+|+|.-|++-+.++...- .+.|+||++++++.+++.. +.. .+.+ ..+||||.+|.....
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~-~~~~~~~~~~~~~dlvINaTp~Gm~ 191 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELY-GYEWRPDLGGIEADILVNVTPIGMA 191 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHh-CCcchhhcccccCCEEEECCccccC
Confidence 358999999999999999988654 2599999999999998753 221 1122 468999999986543
No 46
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.56 E-value=0.0044 Score=55.50 Aligned_cols=65 Identities=17% Similarity=0.024 Sum_probs=49.3
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcchHHhhhhccC-----CCcccccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTVTGSTKK-----GMATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~~a~~~a~~~~-----g~~~~~v~~advvv~~~~~~ 216 (224)
...+++|||+|.+|....+++.... .+.+|+|++++.+.+.+... .-..+.+.++||||.++..+
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH
Confidence 3568999999999999999998764 24999999988776654211 11345678999999999764
No 47
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=96.53 E-value=0.0038 Score=55.33 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=47.2
Q ss_pred EEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhccC---CCcccccccCcEEEEecc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTKK---GMATEDVITAKLIYDKYQ 214 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~~---g~~~~~v~~advvv~~~~ 214 (224)
+++|||+|.+|....+.+... +++.+|+|++++++.|.+... .-..+.+.++|+||.+..
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp 64 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVP 64 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecC
Confidence 489999999999999988765 345999999999988876321 124567789999999865
No 48
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.49 E-value=0.0082 Score=49.88 Aligned_cols=55 Identities=7% Similarity=-0.002 Sum_probs=43.1
Q ss_pred CCcEEEEEecCHh-HHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQ-AYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~Q-A~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
+.++++|||+|.+ +...++.+.... .+.+.+|+.+. ..+.+.+|||||++|++.|
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~-----------l~~~l~~aDiVIsat~~~~ 99 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKN-----------LKEHTKQADIVIVAVGKPG 99 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchh-----------HHHHHhhCCEEEEcCCCCc
Confidence 6799999999986 777888877643 24888887532 3457889999999999977
No 49
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.49 E-value=0.0061 Score=54.72 Aligned_cols=66 Identities=12% Similarity=0.169 Sum_probs=47.1
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCc---chHHhhhhccC---C--C----c------ccccccCcEEEE
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGL---TEGTVTGSTKK---G--M----A------TEDVITAKLIYD 211 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~---~~a~~~a~~~~---g--~----~------~~~v~~advvv~ 211 (224)
..++++|||+|..|++-+.++...- .|.|+||++ +++++|+++.. + + . .+++.++||||.
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivIN 202 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTN 202 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEE
Confidence 4578999999999998766665432 249999995 58898887321 1 1 1 124568999999
Q ss_pred eccccc
Q psy13395 212 KYQAQH 217 (224)
Q Consensus 212 ~~~~~~ 217 (224)
+|....
T Consensus 203 aTp~Gm 208 (288)
T PRK12749 203 GTKVGM 208 (288)
T ss_pred CCCCCC
Confidence 997643
No 50
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.47 E-value=0.0048 Score=54.49 Aligned_cols=62 Identities=26% Similarity=0.294 Sum_probs=46.6
Q ss_pred cEEEEEecCHhHHHHHHHHHHhC-C--c-EEEeCCcchHHhhhhccCC--C--cccccccCcEEEEeccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASL-K--L-KKYNRGLTEGTVTGSTKKG--M--ATEDVITAKLIYDKYQA 215 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~-~--i-~v~~R~~~~a~~~a~~~~g--~--~~~~v~~advvv~~~~~ 215 (224)
.+++|||+|.+|..|++++.... . + .+|+|++++++.|++.... + ..+-+.+.|+||.++..
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~ 71 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASV 71 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCCh
Confidence 36999999999999999988753 3 3 8999999999999874211 1 22223689999987653
No 51
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.46 E-value=0.0052 Score=54.46 Aligned_cols=61 Identities=13% Similarity=0.095 Sum_probs=47.5
Q ss_pred cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC---CCcccccccCcEEEEecc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK---GMATEDVITAKLIYDKYQ 214 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~---g~~~~~v~~advvv~~~~ 214 (224)
.+++|||+|.+|..+.+.+...- ++.+|+|++++.+.+.+... ....+.+.++|+||.+..
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp 67 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLP 67 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCC
Confidence 46999999999999999987642 35999999999888775321 113456689999999875
No 52
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.46 E-value=0.0061 Score=56.13 Aligned_cols=64 Identities=9% Similarity=-0.066 Sum_probs=45.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhcc-CCCcccccccCcEEEEe---cccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTK-KGMATEDVITAKLIYDK---YQAQHS 218 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~-~g~~~~~v~~advvv~~---~~~~~~ 218 (224)
..++++|||+|.+|+.-++.+...-. +.|.||+.+. ..|.+.. +.+ +-..++||||++ |.++|.
T Consensus 173 ~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-~~~~~~~~~~~--~~~~~~DvVIs~t~~Tas~~p 242 (338)
T PRK00676 173 KKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-LPYRTVVREEL--SFQDPYDVIFFGSSESAYAFP 242 (338)
T ss_pred cCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-cchhhhhhhhh--hcccCCCEEEEcCCcCCCCCc
Confidence 68999999999999999999988542 4999999863 3333210 110 113588999997 666663
No 53
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.43 E-value=0.0059 Score=52.42 Aligned_cols=64 Identities=11% Similarity=0.044 Sum_probs=47.9
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhC--C---cEEEeC-CcchHHhhhhccCCC-----cccccccCcEEEEeccccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASL--K---LKKYNR-GLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~--~---i~v~~R-~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~~ 217 (224)
..+++|||+|.+|..+++.+.... + +.+|+| ++++++.++++. ++ ..+.+.++|+||.++..++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~DiViiavp~~~ 78 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY-NVSTTTDWKQHVTSVDTIVLAMPPSA 78 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc-CcEEeCChHHHHhcCCEEEEecCHHH
Confidence 467999999999999999997653 2 256787 467888877642 22 3445678999999987763
No 54
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.38 E-value=0.0056 Score=52.27 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=48.7
Q ss_pred EEEEEe-cCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc------CCC--------cccccccCcEEEEeccccc
Q psy13395 155 VLAIMG-SGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK------KGM--------ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 155 ~l~iiG-aG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~------~g~--------~~~~v~~advvv~~~~~~~ 217 (224)
+++||| +|.+|....+.+...- .+.+|+|++++++.+++.. .|+ ..+++.++|+||.++..++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 589997 9999999999988763 4689999999988876521 121 3456789999999987653
No 55
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.33 E-value=0.0072 Score=54.52 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=50.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhccC------C------C-----cccccccCcEEEEec
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTKK------G------M-----ATEDVITAKLIYDKY 213 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~~------g------~-----~~~~v~~advvv~~~ 213 (224)
+..+++|||+|.+|..-...+... +++.+|+|++++++.+.+... | + ..+++.++|+||.++
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v 82 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAV 82 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEEC
Confidence 456899999999999999988765 346999999999888875311 2 1 234567899999998
Q ss_pred cccc
Q psy13395 214 QAQH 217 (224)
Q Consensus 214 ~~~~ 217 (224)
-.+.
T Consensus 83 ~~~~ 86 (328)
T PRK14618 83 PSKA 86 (328)
T ss_pred chHH
Confidence 7653
No 56
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.32 E-value=0.0069 Score=54.28 Aligned_cols=66 Identities=14% Similarity=0.072 Sum_probs=50.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhcc---CC------Cc----ccccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTK---KG------MA----TEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~---~g------~~----~~~v~~advvv~~~~~~ 216 (224)
+.++++|+|+|.-|++-+.++...- .|.|+||+.+++++++++. .+ .. .+.+..+||||.+|...
T Consensus 126 ~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~G 205 (283)
T PRK14027 126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMG 205 (283)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCC
Confidence 4678999999999999999988643 2499999999999998742 11 11 12345789999999765
Q ss_pred c
Q psy13395 217 H 217 (224)
Q Consensus 217 ~ 217 (224)
.
T Consensus 206 m 206 (283)
T PRK14027 206 M 206 (283)
T ss_pred C
Confidence 3
No 57
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.31 E-value=0.0087 Score=49.67 Aligned_cols=64 Identities=11% Similarity=0.059 Sum_probs=44.9
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~~ 217 (224)
.-++++|+|.|..++-..+.+...--. .|+..+|-++ +....+|+ ..+++.++|||||+|+..+
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~a--lqA~~dGf~v~~~~~a~~~adi~vtaTG~~~ 90 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRA--LQAAMDGFEVMTLEEALRDADIFVTATGNKD 90 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHH--HHHHHTT-EEE-HHHHTTT-SEEEE-SSSSS
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHH--HHhhhcCcEecCHHHHHhhCCEEEECCCCcc
Confidence 467899999999999999999887654 9999988654 22233444 5788899999999999754
No 58
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.31 E-value=0.014 Score=53.89 Aligned_cols=90 Identities=13% Similarity=0.045 Sum_probs=62.1
Q ss_pred eCccchhhhhhhhhHHhhhhhcc-CCCCCCcEEEEEec-CHhHHHHHHHHHHh---CCcEEEeCCcchHHhhhhccC-CC
Q psy13395 125 EGTEITKWRTAAASVVATKHLFG-RSGDKDLVLAIMGS-GAQAYIHAKAFHAS---LKLKKYNRGLTEGTVTGSTKK-GM 198 (224)
Q Consensus 125 Dg~~lT~~RTaA~Salaa~~Lar-~~~~~~~~l~iiGa-G~QA~~hl~a~~~v---~~i~v~~R~~~~a~~~a~~~~-g~ 198 (224)
-||..|+.=....--++.+.+.. - ..++++|+|+ |.+|...++.+..- ..+.+++|++++++.++++.. +-
T Consensus 129 tGNs~T~~ll~~~V~la~~~lg~~l---~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~ 205 (340)
T PRK14982 129 TGNTHTAYVICRQVEQNAPRLGIDL---SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGK 205 (340)
T ss_pred CCchhHHHHHHHHHHHhHHHhccCc---CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcccc
Confidence 46666644333222233344432 2 5689999998 89999999999753 334899999999988887432 11
Q ss_pred ---cccccccCcEEEEeccccc
Q psy13395 199 ---ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 199 ---~~~~v~~advvv~~~~~~~ 217 (224)
..+.+.++|+||++|++.+
T Consensus 206 i~~l~~~l~~aDiVv~~ts~~~ 227 (340)
T PRK14982 206 ILSLEEALPEADIVVWVASMPK 227 (340)
T ss_pred HHhHHHHHccCCEEEECCcCCc
Confidence 3467889999999998754
No 59
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.97 E-value=0.015 Score=52.05 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=45.9
Q ss_pred EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCC-C-cccc-ccc---CcEEEEecccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKG-M-ATED-VIT---AKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g-~-~~~~-v~~---advvv~~~~~~ 216 (224)
++++||.|.+|....+.+...- ++.+|||++++++++.+...- . ..++ +.+ +|+|+..+..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~ 70 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAG 70 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCc
Confidence 5899999999999999987753 359999999999888653110 1 2333 333 69999988765
No 60
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=95.96 E-value=0.016 Score=51.84 Aligned_cols=62 Identities=8% Similarity=0.158 Sum_probs=46.4
Q ss_pred EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC-CC-c----ccccccCcEEEEecccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK-GM-A----TEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~-g~-~----~~~v~~advvv~~~~~~ 216 (224)
+++|||+|.+|....+.+..-- ++.+|+|+++++++|.+... .. . .+.+.++|+|+.....+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~ 70 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG 70 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch
Confidence 6899999999999999887653 35999999999999987321 11 1 22345689999887654
No 61
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.87 E-value=0.015 Score=43.96 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=45.9
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhh-ccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGS-TKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~-~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||.|..|..-++.+...-. ++|++++.+..+.... ....+. +++.++|+||.+|....
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~-~~l~~~~lV~~at~d~~ 72 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFE-EDLDGADLVFAATDDPE 72 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-G-GGCTTESEEEE-SS-HH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHH-HHHhhheEEEecCCCHH
Confidence 57899999999999999988887654 4999999732232222 233554 88999999999997643
No 62
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.85 E-value=0.014 Score=52.43 Aligned_cols=63 Identities=13% Similarity=0.009 Sum_probs=49.5
Q ss_pred cEEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcchHHhhhhcc--------CC-----CcccccccCcEEEEecccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTVTGSTK--------KG-----MATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~~a~~~a~~~--------~g-----~~~~~v~~advvv~~~~~~ 216 (224)
++++|||+|..|..-+.++...- .+.+++|++++++.++... .. ...+++.+|||||.+++..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence 36899999999999999877643 2499999999988777631 11 1457789999999999874
No 63
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=95.78 E-value=0.019 Score=51.25 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=51.8
Q ss_pred cEEEEEecCHhHHHHHHHHHHhCC-----cEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASLK-----LKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~~-----i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~~ 217 (224)
.++++||+|.+|...+..+..-.. |.+-+|+.+++++|+++.... ..+.+.++|+||-+...|+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~ 74 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQD 74 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeChHh
Confidence 479999999999999999998872 388899999999888764221 3567778999999887664
No 64
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=95.76 E-value=0.014 Score=56.28 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=46.8
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc-c-CC------C-cccccc----cCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST-K-KG------M-ATEDVI----TAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~-~-~g------~-~~~~v~----~advvv~~~~ 214 (224)
+-.++++||.|.+|....+-+..- +++.||||++++++.|.+. . .| . ..+++. ++|+|++.-.
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence 556799999999999999988764 3459999999999999873 1 12 1 223333 3999998654
No 65
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=95.70 E-value=0.017 Score=50.61 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=45.5
Q ss_pred EEEEEecCHhHHHHHHHHHHhC---Cc-EEEeCCcchHHhhhhccCC---C-cccccccCcEEEEecccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL---KL-KKYNRGLTEGTVTGSTKKG---M-ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~---~i-~v~~R~~~~a~~~a~~~~g---~-~~~~v~~advvv~~~~~~ 216 (224)
+++|||||.+|...++.+..-+ .+ .+|+|+.++++.+.....+ . ..+.+...|+||.+-+.|
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~ 71 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPE 71 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHH
Confidence 6899999999999999988663 23 9999999999988763222 1 233446777777665543
No 66
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.69 E-value=0.021 Score=50.67 Aligned_cols=63 Identities=10% Similarity=0.021 Sum_probs=45.3
Q ss_pred EEEEEecCHhHHHHHHHHHHhC-----CcEEEeCCc-chHHhhhhccCCC-----cccccccCcEEEEeccccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL-----KLKKYNRGL-TEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~-----~i~v~~R~~-~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~~ 217 (224)
+++|||+|.+|...++.+.... .+.+|+|+. ++.+.+.+...+. ..+.+.++|+||.++..|+
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~ 76 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLA 76 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHH
Confidence 6999999999999999988764 248899865 4455554432121 2345679999999987764
No 67
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.65 E-value=0.033 Score=48.22 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=46.9
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC----CcEEEeCC----cchH-------Hhhhhcc--CCC---cccccccCcEEEE
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL----KLKKYNRG----LTEG-------TVTGSTK--KGM---ATEDVITAKLIYD 211 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~----~i~v~~R~----~~~a-------~~~a~~~--~g~---~~~~v~~advvv~ 211 (224)
...+++|+|+|..|+.-++.+...- .+.++||+ .+++ +.|++.. .+. ..+++.++||||.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIg 103 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIG 103 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEe
Confidence 4679999999999999999887752 35788999 5554 4555532 121 3477889999999
Q ss_pred ecc
Q psy13395 212 KYQ 214 (224)
Q Consensus 212 ~~~ 214 (224)
+|.
T Consensus 104 aT~ 106 (226)
T cd05311 104 VSR 106 (226)
T ss_pred CCC
Confidence 996
No 68
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=95.64 E-value=0.024 Score=47.14 Aligned_cols=61 Identities=21% Similarity=0.208 Sum_probs=39.8
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhccCCC----cccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~ 214 (224)
..++++|||.|.|++.|..-|..- .+ .|-.|...+-.+.|+. .|+ ..|++..||||+-.+-
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDS-G~~V~Vglr~~s~s~~~A~~-~Gf~v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDS-GVNVIVGLREGSASWEKAKA-DGFEVMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHC-C-EEEEEE-TTCHHHHHHHH-TT-ECCEHHHHHHC-SEEEE-S-
T ss_pred CCCEEEEECCChHHHHHHHHHHhC-CCCEEEEecCCCcCHHHHHH-CCCeeccHHHHHhhCCEEEEeCC
Confidence 367999999999999999987663 34 6666666543333332 344 6888999999987663
No 69
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=95.62 E-value=0.031 Score=50.14 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=50.0
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCcchHHhhhhccCCC--------cccccccCcEEEEecc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGLTEGTVTGSTKKGM--------ATEDVITAKLIYDKYQ 214 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~~a~~~a~~~~g~--------~~~~v~~advvv~~~~ 214 (224)
..+++|+|.|.+|.+-.+.+...-.. .||+++...++.......|+ ..+++.+||+||-++-
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavP 73 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVP 73 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEecc
Confidence 56899999999999999999987765 89999998776655544444 2577778999998874
No 70
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=95.55 E-value=0.014 Score=51.83 Aligned_cols=58 Identities=10% Similarity=-0.000 Sum_probs=46.3
Q ss_pred EEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC---CCcccccccCcEEEEeccc
Q psy13395 158 IMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK---GMATEDVITAKLIYDKYQA 215 (224)
Q Consensus 158 iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~---g~~~~~v~~advvv~~~~~ 215 (224)
|||+|.+|....+.+...- ++.+|+|++++.+.+.+... ....+.+.++|+||.+...
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~ 62 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPA 62 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCC
Confidence 5899999999999988753 46999999999998876321 2245677899999998875
No 71
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.52 E-value=0.023 Score=53.52 Aligned_cols=64 Identities=8% Similarity=-0.036 Sum_probs=48.0
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||+|.+|+..++.+..... +.+|++++.++..... .|. ..+++.++||||++|+..+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~--~G~~v~~leeal~~aDVVItaTG~~~ 262 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM--DGFRVMTMEEAAKIGDIFITATGNKD 262 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh--cCCEeCCHHHHHhcCCEEEECCCCHH
Confidence 46799999999999999998876533 4889999876533222 232 3567789999999998654
No 72
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.49 E-value=0.026 Score=50.19 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=48.5
Q ss_pred EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc------------CCC-----cccccccCcEEEEecccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK------------KGM-----ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~------------~g~-----~~~~v~~advvv~~~~~~ 216 (224)
+++|||+|.+|......+...- ++.+|+|++++.+.+.+.. .+. ..+.+.++|+||.++..+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~ 82 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPSQ 82 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCHH
Confidence 6899999999999999988763 3599999999988887631 022 223556999999998765
Q ss_pred c
Q psy13395 217 H 217 (224)
Q Consensus 217 ~ 217 (224)
+
T Consensus 83 ~ 83 (325)
T PRK00094 83 A 83 (325)
T ss_pred H
Confidence 3
No 73
>PRK08507 prephenate dehydrogenase; Validated
Probab=95.45 E-value=0.031 Score=49.19 Aligned_cols=62 Identities=13% Similarity=0.075 Sum_probs=45.2
Q ss_pred EEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcchHHhhhhccC---CCcccccccCcEEEEecccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTVTGSTKK---GMATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~~a~~~a~~~~---g~~~~~v~~advvv~~~~~~ 216 (224)
+++|||+|.+|.+..+.+...- .+.+|+|++++.+.+.+... ....+++.++|+||.++..+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aD~Vilavp~~ 69 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELKKCDVIFLAIPVD 69 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHhcCCEEEEeCcHH
Confidence 6899999999999999988653 24778999988776644211 11334456799999988654
No 74
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.43 E-value=0.045 Score=46.57 Aligned_cols=66 Identities=18% Similarity=0.132 Sum_probs=49.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcch-HHhhhhc------cCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTE-GTVTGST------KKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~-a~~~a~~------~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||.|.+|..-++.+...-. +.|++++... .+.+++. ...+..+++.++|+||.+|....
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence 57899999999999999998887543 5888887643 3455442 12345778999999999997654
No 75
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=95.41 E-value=0.031 Score=50.06 Aligned_cols=60 Identities=15% Similarity=0.059 Sum_probs=44.4
Q ss_pred EEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc---CCCcccccccCcEEEEeccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK---KGMATEDVITAKLIYDKYQA 215 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~---~g~~~~~v~~advvv~~~~~ 215 (224)
++++||+|.+|....+.+... +++.+|+|+++ +++|.+.. .....+.+.++|+||.....
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~ 65 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPD 65 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCC
Confidence 589999999999999988765 34589999974 67775421 12245556799999988653
No 76
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=95.40 E-value=0.033 Score=51.14 Aligned_cols=63 Identities=22% Similarity=0.155 Sum_probs=45.8
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~ 215 (224)
..++++|||+|.||..+++.+...- ++.+++|..++....+.. .|+ ..+++.+||||+.+.-.
T Consensus 16 ~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~-~G~~~~s~~eaa~~ADVVvLaVPd 83 (330)
T PRK05479 16 KGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEA-DGFEVLTVAEAAKWADVIMILLPD 83 (330)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHH-CCCeeCCHHHHHhcCCEEEEcCCH
Confidence 4678999999999999999987542 236777776655555442 233 45677899999998764
No 77
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.34 E-value=0.03 Score=52.88 Aligned_cols=64 Identities=11% Similarity=0.046 Sum_probs=48.1
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~~ 217 (224)
.-++++|+|+|.+|+..++.+...-. +.++++++.+++.... .|. ..+.+..+||||++|+.++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~--~G~~~~~~~e~v~~aDVVI~atG~~~ 269 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM--EGYEVMTMEEAVKEGDIFVTTTGNKD 269 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh--cCCEEccHHHHHcCCCEEEECCCCHH
Confidence 46899999999999999998765432 4888999877643332 232 3466779999999998765
No 78
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.32 E-value=0.039 Score=48.97 Aligned_cols=62 Identities=15% Similarity=0.110 Sum_probs=46.1
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc---------cCC-------------C----ccccccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST---------KKG-------------M----ATEDVIT 205 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~---------~~g-------------~----~~~~v~~ 205 (224)
.++++|||+|.+|..-...+...- ++.+|+|+++..+.+.++ ..| + ..+++.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLAD 83 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhcC
Confidence 568999999999999888887653 459999999887664321 012 1 3366789
Q ss_pred CcEEEEecc
Q psy13395 206 AKLIYDKYQ 214 (224)
Q Consensus 206 advvv~~~~ 214 (224)
+|+||.+.-
T Consensus 84 aD~Vieavp 92 (292)
T PRK07530 84 CDLVIEAAT 92 (292)
T ss_pred CCEEEEcCc
Confidence 999999974
No 79
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.31 E-value=0.045 Score=48.42 Aligned_cols=62 Identities=8% Similarity=-0.061 Sum_probs=47.0
Q ss_pred EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC---C-CcccccccCcEEEEecccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK---G-MATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~---g-~~~~~v~~advvv~~~~~~ 216 (224)
+++|||+|.+|..-.+++...- .+.+|+|+++..+.+.+... . ...+.+.++|+||.++..+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~ 68 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIG 68 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHH
Confidence 6899999999999999987652 35999999988777655311 1 1335678999999998644
No 80
>PRK06545 prephenate dehydrogenase; Validated
Probab=95.30 E-value=0.042 Score=50.52 Aligned_cols=63 Identities=16% Similarity=0.061 Sum_probs=46.3
Q ss_pred cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC-------cccccccCcEEEEecccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM-------ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~-------~~~~v~~advvv~~~~~~ 216 (224)
++++|||+|.+|.+-.+++...- ++.+|+++++..+.......|+ ..+.+.++|+||-++-.+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~ 71 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD 71 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH
Confidence 36999999999999999998764 3589999887654433322232 234578999999987654
No 81
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.30 E-value=0.044 Score=48.93 Aligned_cols=65 Identities=17% Similarity=0.083 Sum_probs=47.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc---cCC--------------C-----cccccccCcE
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST---KKG--------------M-----ATEDVITAKL 208 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~---~~g--------------~-----~~~~v~~adv 208 (224)
..++++|||+|.+|......+...- ++.+|++++++.+++.+. ..| + ..+++.++|+
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDl 82 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADL 82 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCE
Confidence 3578999999999999999887642 359999999887766541 001 1 2245789999
Q ss_pred EEEecccc
Q psy13395 209 IYDKYQAQ 216 (224)
Q Consensus 209 vv~~~~~~ 216 (224)
||.+...+
T Consensus 83 Vi~av~~~ 90 (311)
T PRK06130 83 VIEAVPEK 90 (311)
T ss_pred EEEeccCc
Confidence 99998543
No 82
>PLN02858 fructose-bisphosphate aldolase
Probab=95.24 E-value=0.027 Score=60.45 Aligned_cols=63 Identities=11% Similarity=0.041 Sum_probs=50.5
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc---CCCcccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK---KGMATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~---~g~~~~~v~~advvv~~~~ 214 (224)
.+.++++||.|.+|....+.+... +++.+|||+++++++|++.. ...+.+.+.++|+||+...
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~ 69 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLS 69 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcC
Confidence 477899999999999888887764 34599999999999998742 2335677778999998754
No 83
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.21 E-value=0.052 Score=44.42 Aligned_cols=64 Identities=20% Similarity=0.291 Sum_probs=47.5
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhc------cCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGST------KKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~------~~g~~~~~v~~advvv~~~~~~~ 217 (224)
+.++++|||.|.+|..-++.|...-. +.|++++ ..+.+.+. ..-+..+++.++|+||.+|....
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e 82 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHA 82 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHhccCcEEEecccChhcCCCceEEEECCCCHH
Confidence 67899999999999999999887543 4788644 44444331 12346788999999999997654
No 84
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.18 E-value=0.042 Score=49.30 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=47.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc-CCC----cccccccCcEEEEeccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK-KGM----ATEDVITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~-~g~----~~~~v~~advvv~~~~~ 215 (224)
..++++|||+|..|+..++.+...- .+.+|+|++++.+.+.+.. ..+ ..+.+.++||||.++..
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~ 219 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPA 219 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCCh
Confidence 4689999999999999999987643 2599999998765554311 111 24567899999998743
No 85
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.17 E-value=0.036 Score=49.52 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=44.9
Q ss_pred EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----cccccc----cCcEEEEecccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATEDVI----TAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~~v~----~advvv~~~~~~ 216 (224)
+|+|||+|.+|....+.+...- ++.+|||++++.++|.+. |. ..+++. ++|+|++.....
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~--g~~~~~~~~e~~~~~~~~dvvi~~v~~~ 70 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEE--GATGADSLEELVAKLPAPRVVWLMVPAG 70 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC--CCeecCCHHHHHhhcCCCCEEEEEecCC
Confidence 6999999999999999987653 359999999999998763 22 233333 358988876543
No 86
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.16 E-value=0.037 Score=52.50 Aligned_cols=64 Identities=9% Similarity=0.015 Sum_probs=48.1
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~~ 217 (224)
..++++|+|+|.+|+..++.+...-. +.++++++.++...+.. |. ..+.+.++||||++|+..+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~--G~~v~~l~eal~~aDVVI~aTG~~~ 279 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD--GFRVMTMEEAAELGDIFVTATGNKD 279 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc--CCEecCHHHHHhCCCEEEECCCCHH
Confidence 46799999999999999988876543 48899998876433322 32 3566779999999997654
No 87
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.12 E-value=0.043 Score=48.76 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=46.2
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHh-----------hhhc----------cCC-----Ccccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTV-----------TGST----------KKG-----MATEDVI 204 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~-----------~a~~----------~~g-----~~~~~v~ 204 (224)
+-++++|||+|.+|..-++.++..- ++.+|++++++.+. +.+. ..+ -..+++.
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR 82 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence 3568999999999999999987653 45999999988653 3221 011 1346788
Q ss_pred cCcEEEEecc
Q psy13395 205 TAKLIYDKYQ 214 (224)
Q Consensus 205 ~advvv~~~~ 214 (224)
++|+||.+.-
T Consensus 83 ~aD~Vieav~ 92 (295)
T PLN02545 83 DADFIIEAIV 92 (295)
T ss_pred CCCEEEEcCc
Confidence 9999999865
No 88
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.08 E-value=0.051 Score=48.16 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=45.7
Q ss_pred cEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc---------cCC-------------C-----ccccccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST---------KKG-------------M-----ATEDVIT 205 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~---------~~g-------------~-----~~~~v~~ 205 (224)
++++|||+|.+|..-...+... +++.+|+++++..+.+.+. ..| + ..+++.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 5799999999999988877654 3469999999988775431 001 1 2367889
Q ss_pred CcEEEEeccc
Q psy13395 206 AKLIYDKYQA 215 (224)
Q Consensus 206 advvv~~~~~ 215 (224)
+|+||.+...
T Consensus 82 aD~Vi~avpe 91 (288)
T PRK09260 82 ADLVIEAVPE 91 (288)
T ss_pred CCEEEEeccC
Confidence 9999987643
No 89
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.02 E-value=0.043 Score=50.89 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=47.0
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCC-----C-----cccccccCcEEEEec
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKG-----M-----ATEDVITAKLIYDKY 213 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g-----~-----~~~~v~~advvv~~~ 213 (224)
...+++|||+|..|+.-++.+...-- +.+|+|++++++.+.+.... . ..+.+.++||||+++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~ 238 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAV 238 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEcc
Confidence 35679999999999999999876532 49999999888776653211 1 245677999999987
No 90
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=94.95 E-value=0.046 Score=50.38 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=44.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-Cc---EEEeCCcchHHhhhhccCCC----ccccc---ccCcEEEEec
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-KL---KKYNRGLTEGTVTGSTKKGM----ATEDV---ITAKLIYDKY 213 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i---~v~~R~~~~a~~~a~~~~g~----~~~~v---~~advvv~~~ 213 (224)
+..+++|||+| .|+.|++++...- .+ -|++|+++++++|+++. |+ ..+++ .++|+|++.|
T Consensus 2 ~~~rVgViG~~-~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~-gi~~y~~~eell~d~Di~~V~ipt 72 (343)
T TIGR01761 2 DVQSVVVCGTR-FGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL-GVPLYCEVEELPDDIDIACVVVRS 72 (343)
T ss_pred CCcEEEEEeHH-HHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh-CCCccCCHHHHhcCCCEEEEEeCC
Confidence 56899999995 5999999998865 33 89999999999999853 22 22222 3566666644
No 91
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.93 E-value=0.045 Score=43.91 Aligned_cols=61 Identities=13% Similarity=0.016 Sum_probs=47.5
Q ss_pred EEEEEec-CHhHHHHHHHHHHhCCc----EEEeCCcchHHhhhhcc------CC-------CcccccccCcEEEEecccc
Q psy13395 155 VLAIMGS-GAQAYIHAKAFHASLKL----KKYNRGLTEGTVTGSTK------KG-------MATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiGa-G~QA~~hl~a~~~v~~i----~v~~R~~~~a~~~a~~~------~g-------~~~~~v~~advvv~~~~~~ 216 (224)
+++|||+ |..|..-+..+..- ++ .++++++++++..+... .. -..+++.+|||||-+-+..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~-~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ-GLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred EEEEECCCChHHHHHHHHHHhC-CCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 6899999 99999888877665 43 99999988876666421 11 1689999999999888764
No 92
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.86 E-value=0.055 Score=51.97 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=46.9
Q ss_pred CcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc-----------------cCC-C-----cccccccCcE
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST-----------------KKG-M-----ATEDVITAKL 208 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~-----------------~~g-~-----~~~~v~~adv 208 (224)
..+++|||+|.+|..-...++.. +++.+|+|++++.+.+.+. ..| + ..+++.++|+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~ 83 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW 83 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence 35799999999999988887764 3459999999988765321 012 1 3467889999
Q ss_pred EEEecccc
Q psy13395 209 IYDKYQAQ 216 (224)
Q Consensus 209 vv~~~~~~ 216 (224)
|+.+.-.+
T Consensus 84 Vieavpe~ 91 (495)
T PRK07531 84 IQESVPER 91 (495)
T ss_pred EEEcCcCC
Confidence 99886543
No 93
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.82 E-value=0.065 Score=47.93 Aligned_cols=65 Identities=11% Similarity=0.141 Sum_probs=46.9
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCc---chHHhhhhcc----CC-------C-----cccccccCcEEE
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGL---TEGTVTGSTK----KG-------M-----ATEDVITAKLIY 210 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~---~~a~~~a~~~----~g-------~-----~~~~v~~advvv 210 (224)
..++++|+|+|.+|++-+.++...- .+.|+||+. +++++++++. .. + ..+.+.++||||
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilI 204 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILV 204 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEE
Confidence 4678999999999999888877643 259999997 7777776521 11 1 122345789999
Q ss_pred Eecccc
Q psy13395 211 DKYQAQ 216 (224)
Q Consensus 211 ~~~~~~ 216 (224)
.+|..-
T Consensus 205 NaTp~G 210 (289)
T PRK12548 205 NATLVG 210 (289)
T ss_pred EeCCCC
Confidence 999754
No 94
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=94.78 E-value=0.061 Score=48.96 Aligned_cols=62 Identities=21% Similarity=0.179 Sum_probs=43.7
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCC-cchHHhhhhccCCC----cccccccCcEEEEecccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRG-LTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~-~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~ 216 (224)
.++++|||+|.||..+++.+..-- ++.++.+. .++.+.+.+ .|+ ..+++.+||||+.+...+
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~--~Gv~~~s~~ea~~~ADiVvLaVpp~ 70 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATE--DGFKVGTVEEAIPQADLIMNLLPDE 70 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHH--CCCEECCHHHHHhcCCEEEEeCCcH
Confidence 468999999999999999987642 23555544 334444432 233 455678999999998766
No 95
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=94.77 E-value=0.057 Score=49.68 Aligned_cols=61 Identities=8% Similarity=0.075 Sum_probs=46.0
Q ss_pred EEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhcc--C-------CC-----cccccccCcEEEEecccc
Q psy13395 156 LAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTK--K-------GM-----ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 156 l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~--~-------g~-----~~~~v~~advvv~~~~~~ 216 (224)
|+|||+|.+|+.-++.+....+. .|.+|+.++++++++.. . .+ ..+.+.++||||.+.+..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 68999999999999999998763 99999999999998631 1 11 355678999999887765
No 96
>PLN02858 fructose-bisphosphate aldolase
Probab=94.77 E-value=0.046 Score=58.69 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=50.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc---CCCcccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK---KGMATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~---~g~~~~~v~~advvv~~~~ 214 (224)
..+++++||.|.+|....+.+... +++.+|||++++++.|.+.. ..-..+.+.++|+|++...
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~ 389 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVA 389 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecC
Confidence 468899999999999999988765 34599999999999988742 1225567779999998766
No 97
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.72 E-value=0.069 Score=51.35 Aligned_cols=64 Identities=13% Similarity=0.031 Sum_probs=47.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||.|.+|+..++.+...-- +.++++++.++..... .|. ..+.+.++||||++|+..|
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~--~G~~~~~leell~~ADIVI~atGt~~ 321 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM--EGYQVVTLEDVVETADIFVTATGNKD 321 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh--cCceeccHHHHHhcCCEEEECCCccc
Confidence 57899999999999999998875322 4888888876532221 232 4566789999999997654
No 98
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.64 E-value=0.09 Score=46.93 Aligned_cols=62 Identities=11% Similarity=0.035 Sum_probs=44.9
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHh-----------hhhcc---------------CCCcccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTV-----------TGSTK---------------KGMATEDVI 204 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~-----------~a~~~---------------~g~~~~~v~ 204 (224)
+.++++|||+|.+|..-...++..- ++.+|+++++..+. +.++. .....+++.
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 83 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDFA 83 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHhC
Confidence 4568999999999998887766542 34999999998765 33210 001346788
Q ss_pred cCcEEEEec
Q psy13395 205 TAKLIYDKY 213 (224)
Q Consensus 205 ~advvv~~~ 213 (224)
++|+|+.+-
T Consensus 84 ~~d~ViEav 92 (286)
T PRK07819 84 DRQLVIEAV 92 (286)
T ss_pred CCCEEEEec
Confidence 999999884
No 99
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=94.60 E-value=0.068 Score=46.17 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=45.3
Q ss_pred cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchH-HhhhhccC----C-CcccccccCcEEEEecccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEG-TVTGSTKK----G-MATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a-~~~a~~~~----g-~~~~~v~~advvv~~~~~~ 216 (224)
.+++|+|+|.|+....+.+...- ++.|-+|..+++ ++.++..+ | -..+++..+||||-+....
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFE 71 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHH
Confidence 47899999999999999988874 456665555554 44444322 2 2678888899999887544
No 100
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.57 E-value=0.11 Score=43.27 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=39.7
Q ss_pred EEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc---------cCCC-----------------cccccccCc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST---------KKGM-----------------ATEDVITAK 207 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~---------~~g~-----------------~~~~v~~ad 207 (224)
+|+|||+|.+|+.-...++.. +++.+|+++++..+...++ +.|. ..+++.++|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 589999999998887777665 3359999999876443321 1111 456666999
Q ss_pred EEEEecc
Q psy13395 208 LIYDKYQ 214 (224)
Q Consensus 208 vvv~~~~ 214 (224)
+||.+..
T Consensus 81 lViEai~ 87 (180)
T PF02737_consen 81 LVIEAIP 87 (180)
T ss_dssp EEEE-S-
T ss_pred eehhhcc
Confidence 9999864
No 101
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=94.56 E-value=0.095 Score=40.54 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=45.1
Q ss_pred EEEEEe-cCHhHHHHHHHHHHhCC-c---EEEeCCcchHHhhhhcc---CC--------CcccccccCcEEEEecccc
Q psy13395 155 VLAIMG-SGAQAYIHAKAFHASLK-L---KKYNRGLTEGTVTGSTK---KG--------MATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiG-aG~QA~~hl~a~~~v~~-i---~v~~R~~~~a~~~a~~~---~g--------~~~~~v~~advvv~~~~~~ 216 (224)
+++|+| +|..|..-++.+.. .| + .+++++.+..+.+.+.. .+ ...+++.+.|||+.++...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~-hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~ 77 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAE-HPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHG 77 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-TSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHH
T ss_pred CEEEECCCCHHHHHHHHHHhc-CCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchh
Confidence 589999 99999999999999 55 3 78888885444454421 11 2457789999999998764
No 102
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.56 E-value=0.079 Score=47.63 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=45.8
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCC-------cccccccCcEEEEeccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGM-------ATEDVITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~-------~~~~v~~advvv~~~~~ 215 (224)
..++++|||+|..|+.-++.+...-. +.+++|++++.+...+ .|. ..+.+.++||||+++..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~--~G~~~~~~~~l~~~l~~aDiVI~t~p~ 220 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE--MGLSPFHLSELAEEVGKIDIIFNTIPA 220 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--cCCeeecHHHHHHHhCCCCEEEECCCh
Confidence 47899999999999998888876543 4999999876443322 222 34667899999998753
No 103
>PLN02494 adenosylhomocysteinase
Probab=94.53 E-value=0.069 Score=51.31 Aligned_cols=66 Identities=14% Similarity=-0.040 Sum_probs=47.2
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHH-hhhhccC-CCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGT-VTGSTKK-GMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~-~~a~~~~-g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|+|+|.+|+..++.+...-- +.+|++++.++. ++..... -...+.+..+||||++|+..|
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~tTGt~~ 321 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTTTGNKD 321 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEECCCCcc
Confidence 47899999999999999999865422 488999987643 2222110 013566779999999998765
No 104
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=94.51 E-value=0.061 Score=56.21 Aligned_cols=65 Identities=14% Similarity=0.074 Sum_probs=50.5
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC---------------cEEEeCCcchHHhhhhccCC-------C-----cccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK---------------LKKYNRGLTEGTVTGSTKKG-------M-----ATEDVI 204 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~---------------i~v~~R~~~~a~~~a~~~~g-------~-----~~~~v~ 204 (224)
..++++|||+|.+|+.|++.+...-. +.|.++++++++++++...+ + ..+.+.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 36799999999999999999987422 37899999999999874323 2 233446
Q ss_pred cCcEEEEecccc
Q psy13395 205 TAKLIYDKYQAQ 216 (224)
Q Consensus 205 ~advvv~~~~~~ 216 (224)
+.|+||.++..+
T Consensus 648 ~~DaVIsalP~~ 659 (1042)
T PLN02819 648 QVDVVISLLPAS 659 (1042)
T ss_pred CCCEEEECCCch
Confidence 799999998764
No 105
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.47 E-value=0.088 Score=48.96 Aligned_cols=66 Identities=17% Similarity=0.204 Sum_probs=49.5
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC--------CcEEEeCCcch-----HHhhhhccC------CC-----------ccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL--------KLKKYNRGLTE-----GTVTGSTKK------GM-----------ATE 201 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~--------~i~v~~R~~~~-----a~~~a~~~~------g~-----------~~~ 201 (224)
+..+++|||+|.-|-+....+..-. .+.+|.|+++- ++.+.+.+. |+ ..+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 6789999999999999999888653 35999999872 455544221 22 245
Q ss_pred ccccCcEEEEeccccc
Q psy13395 202 DVITAKLIYDKYQAQH 217 (224)
Q Consensus 202 ~v~~advvv~~~~~~~ 217 (224)
++.+||+||-++..|.
T Consensus 90 av~~aDiIvlAVPsq~ 105 (365)
T PTZ00345 90 AVEDADLLIFVIPHQF 105 (365)
T ss_pred HHhcCCEEEEEcChHH
Confidence 7789999999987764
No 106
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.45 E-value=0.075 Score=51.35 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=46.3
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhh---------ccCC-----------------Ccccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGS---------TKKG-----------------MATEDVI 204 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~---------~~~g-----------------~~~~~v~ 204 (224)
+.++|+|||+|.+|..-...+... +++.+|+|+++..+...+ ...| ...+++.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 467899999999999998887665 345999999998765321 0112 1346778
Q ss_pred cCcEEEEecc
Q psy13395 205 TAKLIYDKYQ 214 (224)
Q Consensus 205 ~advvv~~~~ 214 (224)
++|+||.+--
T Consensus 84 ~aDlVIEav~ 93 (503)
T TIGR02279 84 DAGLVIEAIV 93 (503)
T ss_pred CCCEEEEcCc
Confidence 9999999854
No 107
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=94.44 E-value=0.078 Score=48.76 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=43.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhccCC----CcccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGSTKKG----MATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~~g----~~~~~v~~advvv~~~~ 214 (224)
..++|+|||.|.||+.|.+.+.. +.. .+|+|... ...++.. .| -..+.+.+||||+....
T Consensus 15 kgKtVGIIG~GsIG~amA~nL~d-~G~~ViV~~r~~~-s~~~A~~-~G~~v~sl~Eaak~ADVV~llLP 80 (335)
T PRK13403 15 QGKTVAVIGYGSQGHAQAQNLRD-SGVEVVVGVRPGK-SFEVAKA-DGFEVMSVSEAVRTAQVVQMLLP 80 (335)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHH-CcCEEEEEECcch-hhHHHHH-cCCEECCHHHHHhcCCEEEEeCC
Confidence 46889999999999999999875 444 78887643 3333322 12 26777889999998765
No 108
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=94.36 E-value=0.07 Score=47.65 Aligned_cols=62 Identities=15% Similarity=0.060 Sum_probs=42.7
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhC----Cc-EEEeCCcchHHhhhhccCCC-cccc--cccCcEEEEecc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASL----KL-KKYNRGLTEGTVTGSTKKGM-ATED--VITAKLIYDKYQ 214 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~----~i-~v~~R~~~~a~~~a~~~~g~-~~~~--v~~advvv~~~~ 214 (224)
..+++|||||.+|..-.+++..-. .+ .|+.|+++++++|+..-.-+ ..++ ....|+||.+-+
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~ 71 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAG 71 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCC
Confidence 368999999999999999987642 23 88999999999887641111 1222 245666665543
No 109
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.26 E-value=0.11 Score=47.41 Aligned_cols=62 Identities=16% Similarity=0.166 Sum_probs=43.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc---------cCCC--------------cccccccCc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST---------KKGM--------------ATEDVITAK 207 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~---------~~g~--------------~~~~v~~ad 207 (224)
+.++++|||+|.+|..-...++.. +++.+|+++++..+.+..+ +.|+ ..+++.+||
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aD 85 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADAD 85 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCC
Confidence 568899999999998887776653 2349999998865543220 0111 246678999
Q ss_pred EEEEec
Q psy13395 208 LIYDKY 213 (224)
Q Consensus 208 vvv~~~ 213 (224)
+|+.+-
T Consensus 86 lViEav 91 (321)
T PRK07066 86 FIQESA 91 (321)
T ss_pred EEEECC
Confidence 999874
No 110
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.23 E-value=0.086 Score=43.62 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=45.9
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhc--cCCCcccccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGST--KKGMATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~--~~g~~~~~v~~advvv~~~~~~ 216 (224)
..++|+|||.|.+|+.-.+.+...-- +.+|+|+....+.+.+. ..--..+.+.++|+|+......
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt 102 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLT 102 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSS
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccc
Confidence 58899999999999999999885432 49999999876533331 1122566778999999876643
No 111
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=94.20 E-value=0.12 Score=46.53 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=44.0
Q ss_pred cEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHH-hhhhccCCC-----ccccc---ccCcEEEEecccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGT-VTGSTKKGM-----ATEDV---ITAKLIYDKYQAQ 216 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~-~~a~~~~g~-----~~~~v---~~advvv~~~~~~ 216 (224)
-+++|||+|.+|..|+..+.....+ .++++++++.. +++++ .|+ ..+++ .+-|+|+.+|...
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~-~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~ 75 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARE-LGVKTSAEGVDGLLANPDIDIVFDATSAK 75 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHH-CCCCEEECCHHHHhcCCCCCEEEECCCcH
Confidence 3799999999999999888875443 89999998754 45543 232 12222 2578899998765
No 112
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.14 E-value=0.1 Score=46.79 Aligned_cols=62 Identities=13% Similarity=0.184 Sum_probs=44.2
Q ss_pred cEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc---------cCC-------------C-----ccccccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST---------KKG-------------M-----ATEDVIT 205 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~---------~~g-------------~-----~~~~v~~ 205 (224)
.+++|||+|.+|..-...+... +++.+|+|+++..+...++ ..| + ..+++.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 4799999999999888887765 3469999999876543210 011 1 2356789
Q ss_pred CcEEEEeccc
Q psy13395 206 AKLIYDKYQA 215 (224)
Q Consensus 206 advvv~~~~~ 215 (224)
+|+|+.+.-.
T Consensus 83 ad~Vi~avpe 92 (308)
T PRK06129 83 ADYVQESAPE 92 (308)
T ss_pred CCEEEECCcC
Confidence 9999998754
No 113
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=94.07 E-value=0.1 Score=45.91 Aligned_cols=59 Identities=17% Similarity=0.132 Sum_probs=41.6
Q ss_pred cEEEEEec-CHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccCCC-----cccccccCcEEEEecc
Q psy13395 154 LVLAIMGS-GAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQ 214 (224)
Q Consensus 154 ~~l~iiGa-G~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~ 214 (224)
-+++|+|+ |.+|+.|++.+...-.+ -++++++++++.+ ...++ ..+.+...|+||..|.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~--~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ--GALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc--CCCCccccCCHHHhccCCCEEEECCC
Confidence 47999998 99999999998765333 7789998877655 22232 1222347899997764
No 114
>PRK08605 D-lactate dehydrogenase; Validated
Probab=94.06 E-value=0.11 Score=47.43 Aligned_cols=63 Identities=24% Similarity=0.217 Sum_probs=42.0
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchH-HhhhhccCCCcccccccCcEEEEeccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEG-TVTGSTKKGMATEDVITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a-~~~a~~~~g~~~~~v~~advvv~~~~~ 215 (224)
..++++|||+|.+|+...+.+..-+.. ..|+|+.... +.+.. ...-..+.+.++|+|+..+..
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~-~~~~l~ell~~aDvIvl~lP~ 210 (332)
T PRK08605 145 KDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVD-YKDTIEEAVEGADIVTLHMPA 210 (332)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHhhcc-ccCCHHHHHHhCCEEEEeCCC
Confidence 467899999999999999988544443 6666665432 11111 111245677899999988644
No 115
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.05 E-value=0.13 Score=46.76 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=45.3
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchH-HhhhhccCCC-----------cccccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEG-TVTGSTKKGM-----------ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a-~~~a~~~~g~-----------~~~~v~~advvv~~~~~~ 216 (224)
+..+++|||+|..|..|+..+.....+ -++++++++. .+++++ .|+ ...+..+-|+|+.+|++.
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~-~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~ 81 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARR-LGVATSAEGIDGLLAMPEFDDIDIVFDATSAG 81 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHH-cCCCcccCCHHHHHhCcCCCCCCEEEECCCHH
Confidence 346899999999999999999884333 8899998753 355543 232 111224679999999875
No 116
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.03 E-value=0.13 Score=45.58 Aligned_cols=63 Identities=13% Similarity=0.029 Sum_probs=44.5
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc-----------------------cCCC-----ccccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST-----------------------KKGM-----ATEDV 203 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~-----------------------~~g~-----~~~~v 203 (224)
.++++|||+|.+|......+...- ++.+|+++++..+...+. ...+ ..+++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 468999999999999888776542 359999998865544321 0011 23467
Q ss_pred ccCcEEEEeccc
Q psy13395 204 ITAKLIYDKYQA 215 (224)
Q Consensus 204 ~~advvv~~~~~ 215 (224)
.++|+||.+.-.
T Consensus 83 ~~aDlVieavpe 94 (287)
T PRK08293 83 KDADLVIEAVPE 94 (287)
T ss_pred cCCCEEEEeccC
Confidence 899999998753
No 117
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.99 E-value=0.12 Score=50.03 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=45.8
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhh-----------hhcc----------C-----CCcccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVT-----------GSTK----------K-----GMATEDVI 204 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~-----------a~~~----------~-----g~~~~~v~ 204 (224)
+.++++|||+|.+|..-...++.. +++.+|+++++.+++. .++. . ....+++.
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~~ 85 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADLA 85 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhC
Confidence 578899999999999888876654 3459999999988763 2210 0 01456788
Q ss_pred cCcEEEEec
Q psy13395 205 TAKLIYDKY 213 (224)
Q Consensus 205 ~advvv~~~ 213 (224)
++|+||.+-
T Consensus 86 ~aDlViEav 94 (507)
T PRK08268 86 DCDLVVEAI 94 (507)
T ss_pred CCCEEEEcC
Confidence 999999873
No 118
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=93.95 E-value=0.1 Score=52.10 Aligned_cols=64 Identities=19% Similarity=0.059 Sum_probs=48.1
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcchHHhhhhccC---CC--cccccccCcEEEEecccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTVTGSTKK---GM--ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~~a~~~a~~~~---g~--~~~~v~~advvv~~~~~~ 216 (224)
-++++|||+|.+|.+.++.+...- .+.+|+|++++.+.+.+... .. ..+.+.++|+||.++..+
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH
Confidence 478999999999999999998754 25899999988766543211 01 234578999999998754
No 119
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.93 E-value=0.16 Score=43.79 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=53.2
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCc-chHHhhhhcc------CCCcccccccCcEEEEecccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGL-TEGTVTGSTK------KGMATEDVITAKLIYDKYQAQHS 218 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~-~~a~~~a~~~------~g~~~~~v~~advvv~~~~~~~~ 218 (224)
..+.++|||.|..|..=++.|+..-.. +||+++. +..+.+++.. ..+..+.+..+++||.+|...+-
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~l 85 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEEL 85 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHHH
Confidence 567999999999999999999887764 9999888 4445555532 35678888889999999987543
No 120
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.92 E-value=0.12 Score=46.43 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=39.7
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA 215 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~ 215 (224)
..+++|||+|.+|..-.+.+...- ++.+|+|+.+. -..+.+.++|+|+.++..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~----------~~~~~~~~advvi~~vp~ 57 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL----------SLAAVLADADVIVSAVSM 57 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC----------CHHHHHhcCCEEEEECCh
Confidence 457999999999999999987663 46999998641 123455678888777654
No 121
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.90 E-value=0.14 Score=46.84 Aligned_cols=66 Identities=9% Similarity=0.075 Sum_probs=50.0
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhcc-----C--CC-----------cccccccCcEEEEec
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTK-----K--GM-----------ATEDVITAKLIYDKY 213 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~-----~--g~-----------~~~~v~~advvv~~~ 213 (224)
...+++|||+|..|......+...-++.+|.|+++..+++.+.. . ++ ..+++.++|+||-++
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilav 85 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGV 85 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEe
Confidence 35689999999999999988887655699999999887776521 1 11 234567899999998
Q ss_pred cccc
Q psy13395 214 QAQH 217 (224)
Q Consensus 214 ~~~~ 217 (224)
-.|+
T Consensus 86 ps~~ 89 (341)
T PRK12439 86 PSHG 89 (341)
T ss_pred CHHH
Confidence 7664
No 122
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.86 E-value=0.13 Score=47.06 Aligned_cols=64 Identities=20% Similarity=0.205 Sum_probs=46.2
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCCcccccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~ 216 (224)
..++++|||+|.+|+.-.+.+...-. +.+|+|+++....+... ..-..+.+.+||+|+......
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~-~~~l~ell~~aDiVil~lP~t 209 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTY-KDSVKEAIKDADIISLHVPAN 209 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhc-cCCHHHHHhcCCEEEEeCCCc
Confidence 45689999999999999988875322 49999998665444321 112456778999999887654
No 123
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=93.80 E-value=0.15 Score=48.92 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=49.2
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC--CCc---ccccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK--GMA---TEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~--g~~---~~~v~~advvv~~~~~~ 216 (224)
..++++|+|+|..|+.-...+...- .+.+++|+.++++.+++... .+. .+++.++|+||.+|...
T Consensus 331 ~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 331 NNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPS 401 (477)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCC
Confidence 4678999999999999988887643 24899999999998876421 111 23367899999998653
No 124
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.74 E-value=0.18 Score=44.25 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=45.9
Q ss_pred EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC----C--------C-cccccccCcEEEEeccccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK----G--------M-ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~----g--------~-~~~~v~~advvv~~~~~~~ 217 (224)
+++|||+|.+|......+...- ++.+|.|+.++.+.+.+... | . ..+++..+|+||.++.+++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~~~ 78 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAVKAYQ 78 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEeccccc
Confidence 5899999999998888887653 35999998887776654211 1 0 1334578999999988754
No 125
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.74 E-value=0.14 Score=44.22 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=50.3
Q ss_pred cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC--------CC-----cccccccCcEEEEecccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK--------GM-----ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~--------g~-----~~~~v~~advvv~~~~~~ 216 (224)
..++|+|+|..|+.-++.|...- .+.+..+++++++.+.+... +. ...-+.+||+||.+|+..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 36899999999999999999984 46999999999988666322 11 344488999999999864
No 126
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.73 E-value=0.11 Score=47.51 Aligned_cols=62 Identities=18% Similarity=0.094 Sum_probs=41.0
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchH-HhhhhccCCC----cccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEG-TVTGSTKKGM----ATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a-~~~a~~~~g~----~~~~v~~advvv~~~~ 214 (224)
+.++++|||+|.|++.|..-+..----.+++-.+.+. -+.|. ..|+ ..+++..||||.--+-
T Consensus 17 kgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~-~dGf~V~~v~ea~k~ADvim~L~P 83 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAK-EDGFKVYTVEEAAKRADVVMILLP 83 (338)
T ss_pred cCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHH-hcCCEeecHHHHhhcCCEEEEeCc
Confidence 5789999999999999988765532114444333332 23332 2354 6889999999986553
No 127
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.66 E-value=0.12 Score=48.37 Aligned_cols=61 Identities=13% Similarity=0.097 Sum_probs=47.5
Q ss_pred EEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc-----------------CC-C-----cccccccCcEEE
Q psy13395 155 VLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK-----------------KG-M-----ATEDVITAKLIY 210 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~-----------------~g-~-----~~~~v~~advvv 210 (224)
+++|||+|.+|......+... +.+.+|++++++.+.+.+.. .| + ..+++.++|+||
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvi 81 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVII 81 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEE
Confidence 589999999999999998875 34599999999998877521 23 2 234578999999
Q ss_pred Eeccc
Q psy13395 211 DKYQA 215 (224)
Q Consensus 211 ~~~~~ 215 (224)
.+...
T Consensus 82 i~vpt 86 (411)
T TIGR03026 82 ICVPT 86 (411)
T ss_pred EEeCC
Confidence 88764
No 128
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.54 E-value=0.17 Score=45.50 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=46.7
Q ss_pred EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC------CC-----------ccccc-ccCcEEEEeccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK------GM-----------ATEDV-ITAKLIYDKYQA 215 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~------g~-----------~~~~v-~~advvv~~~~~ 215 (224)
+++|||+|.+|..-...+...- ++.+|+|+++..+.+.+.+. +. ..+++ .++|+||-++-.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 5899999999999888887764 45999999988877765321 21 11344 488999998877
Q ss_pred cc
Q psy13395 216 QH 217 (224)
Q Consensus 216 ~~ 217 (224)
++
T Consensus 82 ~~ 83 (326)
T PRK14620 82 QQ 83 (326)
T ss_pred HH
Confidence 64
No 129
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.52 E-value=0.18 Score=44.72 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=45.0
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc------------cCC-------------C----cccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST------------KKG-------------M----ATED 202 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~------------~~g-------------~----~~~~ 202 (224)
-++++|||+|.+|..-...+...- ++.+|+++++..+...++ ..| + ..++
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 82 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYES 82 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHHH
Confidence 468999999999999888876643 359999999876532110 001 1 2356
Q ss_pred cccCcEEEEecccc
Q psy13395 203 VITAKLIYDKYQAQ 216 (224)
Q Consensus 203 v~~advvv~~~~~~ 216 (224)
+.++|+||.+...+
T Consensus 83 ~~~aDlVieav~e~ 96 (291)
T PRK06035 83 LSDADFIVEAVPEK 96 (291)
T ss_pred hCCCCEEEEcCcCc
Confidence 78999999997544
No 130
>PRK08655 prephenate dehydrogenase; Provisional
Probab=93.26 E-value=0.17 Score=47.97 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=47.1
Q ss_pred EEEEEe-cCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC-----cccccccCcEEEEecccc
Q psy13395 155 VLAIMG-SGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiG-aG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~ 216 (224)
+++||| +|.+|.+-.+++.... .+.+|+|++++++.++... |+ ..+.+.++|+||.++..+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~-gv~~~~~~~e~~~~aDvVIlavp~~ 69 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL-GVEYANDNIDAAKDADIVIISVPIN 69 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc-CCeeccCHHHHhccCCEEEEecCHH
Confidence 689998 8999999999987743 3599999998876666542 22 345678999999987654
No 131
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.25 E-value=0.14 Score=38.56 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=48.1
Q ss_pred EEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC----C-------CcccccccCcEEEEecccccc
Q psy13395 156 LAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK----G-------MATEDVITAKLIYDKYQAQHS 218 (224)
Q Consensus 156 l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~----g-------~~~~~v~~advvv~~~~~~~~ 218 (224)
+.|+|+|..|+.-++.+..-. ++.+..++++..+.+.+... | +....+.+||.||..|.....
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~ 75 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEE 75 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHH
Confidence 579999999999999999944 34999999999888876421 1 145677899999999875443
No 132
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=93.04 E-value=0.21 Score=47.29 Aligned_cols=65 Identities=12% Similarity=0.109 Sum_probs=51.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhccC-------------C-C----cccccccCcEEEEec
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKK-------------G-M----ATEDVITAKLIYDKY 213 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~~-------------g-~----~~~~v~~advvv~~~ 213 (224)
++.+++|||.|.+|.-....+..-+++.+|++++++.+.|.+... | + ..+++.++|+||.+-
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V 84 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV 84 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence 567899999999999999998886566999999999999984211 1 1 355688999999886
Q ss_pred ccc
Q psy13395 214 QAQ 216 (224)
Q Consensus 214 ~~~ 216 (224)
...
T Consensus 85 ptp 87 (425)
T PRK15182 85 PTP 87 (425)
T ss_pred CCC
Confidence 643
No 133
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=93.00 E-value=0.22 Score=45.69 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=43.1
Q ss_pred cEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhcc-----------------CCC-----cccccccCcE
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTK-----------------KGM-----ATEDVITAKL 208 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~-----------------~g~-----~~~~v~~adv 208 (224)
.+++|+|+|.+|+.+++++...-.+ -+++++++..+.++... .++ ..+...+.|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 3799999999999999998764223 67777765555444311 011 2333458899
Q ss_pred EEEeccccc
Q psy13395 209 IYDKYQAQH 217 (224)
Q Consensus 209 vv~~~~~~~ 217 (224)
|+.+|+...
T Consensus 82 VIdaT~~~~ 90 (341)
T PRK04207 82 VVDATPGGV 90 (341)
T ss_pred EEECCCchh
Confidence 999987653
No 134
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=92.93 E-value=0.21 Score=46.63 Aligned_cols=62 Identities=8% Similarity=0.011 Sum_probs=46.9
Q ss_pred EEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhcc--------------C-C-C-----cccccccCcEEEEec
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTK--------------K-G-M-----ATEDVITAKLIYDKY 213 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~--------------~-g-~-----~~~~v~~advvv~~~ 213 (224)
+|+|||+|.+|.-....+..-+++.+|++++++.+.+.+.. . + + ..+++.++|+||.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~V 81 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIAT 81 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEeC
Confidence 58999999999988877665445699999999998887621 1 1 1 245578999999988
Q ss_pred ccc
Q psy13395 214 QAQ 216 (224)
Q Consensus 214 ~~~ 216 (224)
...
T Consensus 82 pt~ 84 (388)
T PRK15057 82 PTD 84 (388)
T ss_pred CCC
Confidence 743
No 135
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.76 E-value=0.34 Score=41.29 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=49.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcc-hHHhhhhcc------CCCcccccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLT-EGTVTGSTK------KGMATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~-~a~~~a~~~------~g~~~~~v~~advvv~~~~~~ 216 (224)
..++++|||.|..|..-++.++..-. +.|++++.. ..+.+++.. ..+..+++.++|+||.+|+..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDE 80 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCH
Confidence 46799999999999999999988554 499988765 334554421 133577899999999999865
No 136
>KOG2741|consensus
Probab=92.74 E-value=0.11 Score=48.00 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=38.9
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC--C--c-EEEeCCcchHHhhhhc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL--K--L-KKYNRGLTEGTVTGST 194 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~--i-~v~~R~~~~a~~~a~~ 194 (224)
...+.+|+|+|.+++++++++..+. + | -|.+|+.++|.+||++
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~ 52 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQR 52 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHh
Confidence 5678999999999999999999887 3 4 9999999999999985
No 137
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.69 E-value=0.3 Score=44.31 Aligned_cols=63 Identities=14% Similarity=0.039 Sum_probs=47.0
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc----EEEeCCcchHHhhhhccC-------CC-----cccccccCcEEEEeccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL----KKYNRGLTEGTVTGSTKK-------GM-----ATEDVITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i----~v~~R~~~~a~~~a~~~~-------g~-----~~~~v~~advvv~~~~~ 215 (224)
...+++|||+|..|..-...+.. .++ .+++++.++++..+.... .. ..+++.+|||||-+-+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~-~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVN-QGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA 83 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence 57799999999999888776553 443 999999988766654211 11 46889999999987665
No 138
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=92.46 E-value=0.22 Score=47.74 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=44.7
Q ss_pred EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc-cCC--C----ccccc----ccCcEEEEeccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST-KKG--M----ATEDV----ITAKLIYDKYQA 215 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~-~~g--~----~~~~v----~~advvv~~~~~ 215 (224)
.++|||.|.+|....+.+..-- ++.+|||++++.+.|.+. ..| + ..+++ .++|+|+....+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~ 73 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKA 73 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCC
Confidence 3799999999999999987753 359999999999999875 211 2 22333 357988876543
No 139
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=92.31 E-value=0.24 Score=45.00 Aligned_cols=62 Identities=11% Similarity=0.199 Sum_probs=43.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhcc-CCCcccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGSTK-KGMATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~-~g~~~~~v~~advvv~~~~ 214 (224)
..++++|||.|.+|+.-.+-+.. +.. .+|+|++++...+.... ..-..+.+.++|+|+....
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~a-fG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lP 199 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQT-WGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLP 199 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCC
Confidence 56899999999999999888775 543 88998876532221111 1124677789999998654
No 140
>PRK13243 glyoxylate reductase; Reviewed
Probab=92.20 E-value=0.3 Score=44.65 Aligned_cols=64 Identities=11% Similarity=0.018 Sum_probs=44.3
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc-cCCCcccccccCcEEEEeccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST-KKGMATEDVITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~-~~g~~~~~v~~advvv~~~~~ 215 (224)
..++++|||.|.+|+.-.+.+...- .+.+|+|+++........ ...-..+.+.+||+|+..+..
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~ 214 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPL 214 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCC
Confidence 5689999999999999999887542 248999987543211110 111245667899999988753
No 141
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=92.19 E-value=0.2 Score=40.47 Aligned_cols=39 Identities=13% Similarity=0.052 Sum_probs=27.4
Q ss_pred EEEeCCcchHHhhhhc--cCCC-----------cccccccCcEEEEeccccc
Q psy13395 179 KKYNRGLTEGTVTGST--KKGM-----------ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 179 ~v~~R~~~~a~~~a~~--~~g~-----------~~~~v~~advvv~~~~~~~ 217 (224)
.||+|+....+.|+.. .+|. ..+.+++|||||++|+..+
T Consensus 32 ~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~ 83 (140)
T cd05212 32 LVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPE 83 (140)
T ss_pred EEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCC
Confidence 7777777777666652 1222 3567999999999998763
No 142
>PLN03139 formate dehydrogenase; Provisional
Probab=92.01 E-value=0.34 Score=45.40 Aligned_cols=62 Identities=6% Similarity=0.026 Sum_probs=43.8
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhc---cCCCcccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGST---KKGMATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~---~~g~~~~~v~~advvv~~~~ 214 (224)
..++++|||.|.+|+..++.+.. +.. .+|+|+....+.+.+. ...-..+.+.++|||+....
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~a-fG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lP 264 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKP-FNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTP 264 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHH-CCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCC
Confidence 57799999999999999999876 543 8889886444433221 11124566679999998654
No 143
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.00 E-value=0.36 Score=46.92 Aligned_cols=40 Identities=8% Similarity=0.110 Sum_probs=33.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCcchHHhh
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGLTEGTVT 191 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~~a~~~ 191 (224)
...+++|+|+|..|...++.+...-.. .++++++++.+.+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a 203 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV 203 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 468999999999999999998887664 8899998865544
No 144
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=91.98 E-value=0.42 Score=42.23 Aligned_cols=61 Identities=8% Similarity=0.054 Sum_probs=37.7
Q ss_pred cEEEEEecCHhHHHHHHHHHHhCC--c-EEEeCCcchHHhhhhcc-CCC----ccccc-ccCcEEEEeccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASLK--L-KKYNRGLTEGTVTGSTK-KGM----ATEDV-ITAKLIYDKYQA 215 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~~--i-~v~~R~~~~a~~~a~~~-~g~----~~~~v-~~advvv~~~~~ 215 (224)
.+++|||+|.+|+.|++.+...-. + .++.+... .++..+.. .++ ..+++ .+.|+||..|..
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~ 71 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRALGEAVRVVSSVDALPQRPDLVVECAGH 71 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhhhccCCeeeCCHHHhccCCCEEEECCCH
Confidence 379999999999999999887533 3 66654432 22222211 122 22333 458999988875
No 145
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=91.98 E-value=0.34 Score=44.55 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=50.4
Q ss_pred cEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccC------CC-----------cccccccCcEEEEeccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKK------GM-----------ATEDVITAKLIYDKYQA 215 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~------g~-----------~~~~v~~advvv~~~~~ 215 (224)
.+++|||+|.=|-+....+..-.+ +++|.|+++-.+++...+. |+ ..+++.++|+||-+.-.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 479999999999999888888754 5999999999888776421 32 35566679999998877
Q ss_pred cc
Q psy13395 216 QH 217 (224)
Q Consensus 216 ~~ 217 (224)
|.
T Consensus 82 ~~ 83 (329)
T COG0240 82 QA 83 (329)
T ss_pred HH
Confidence 64
No 146
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.91 E-value=0.39 Score=43.62 Aligned_cols=62 Identities=11% Similarity=-0.043 Sum_probs=44.1
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhCCc----EEEeCCcchHHhhhhc----c--CC-------CcccccccCcEEEEeccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASLKL----KKYNRGLTEGTVTGST----K--KG-------MATEDVITAKLIYDKYQA 215 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~~i----~v~~R~~~~a~~~a~~----~--~g-------~~~~~v~~advvv~~~~~ 215 (224)
...|+|||+|..|...+..+.. .++ .++++++++++..+.. . .. -..+++.+|||||-+-+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~-~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~~~adivvitaG~ 81 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILA-KGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVTANSKVVIVTAGA 81 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHhCCCCEEEECCCC
Confidence 4589999999999887776543 343 9999988876554431 1 11 156789999999987665
No 147
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.91 E-value=0.29 Score=45.95 Aligned_cols=62 Identities=8% Similarity=0.106 Sum_probs=47.2
Q ss_pred cEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhcc-CC-----C-------cccccccCcEEEEeccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTK-KG-----M-------ATEDVITAKLIYDKYQA 215 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~-~g-----~-------~~~~v~~advvv~~~~~ 215 (224)
.+++|||+|.+|+.-++-+++-. .|.|-+|++++++++.+.. .. + ..+.|.+.|+||.+-..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 57899999999999888877655 3599999999988886521 11 1 45777888999987543
No 148
>PLN02256 arogenate dehydrogenase
Probab=91.83 E-value=0.4 Score=43.34 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=43.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----ccc-cc-ccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATE-DV-ITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~-~v-~~advvv~~~~~~ 216 (224)
...+++|||+|.+|.+..+++...- .+.+|+|+... +.+.. .|+ ..+ .+ .++|+||-++..+
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~--~~a~~-~gv~~~~~~~e~~~~~aDvVilavp~~ 103 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS--DIAAE-LGVSFFRDPDDFCEEHPDVVLLCTSIL 103 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH--HHHHH-cCCeeeCCHHHHhhCCCCEEEEecCHH
Confidence 6779999999999999999987642 35889988642 33332 233 222 23 3689999988654
No 149
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.80 E-value=0.39 Score=42.29 Aligned_cols=62 Identities=10% Similarity=0.063 Sum_probs=44.4
Q ss_pred cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHh-----------hhhcc-----------CCC----cccccccC
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTV-----------TGSTK-----------KGM----ATEDVITA 206 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~-----------~a~~~-----------~g~----~~~~v~~a 206 (224)
++++|||+|.+|..-...+...- ++.+|++++++.+. +.+.. ..+ ..+++.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~a 83 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLKDA 83 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhccC
Confidence 57999999999999999887653 35999999988742 22211 011 33567899
Q ss_pred cEEEEeccc
Q psy13395 207 KLIYDKYQA 215 (224)
Q Consensus 207 dvvv~~~~~ 215 (224)
|+||.+.-.
T Consensus 84 DlVi~av~e 92 (282)
T PRK05808 84 DLVIEAATE 92 (282)
T ss_pred Ceeeecccc
Confidence 999998753
No 150
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=91.71 E-value=0.3 Score=46.87 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=35.1
Q ss_pred EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST 194 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~ 194 (224)
+++|||.|.+|....+.+...- .+.+|||++++.+.|.+.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~ 43 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKK 43 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh
Confidence 6999999999999999988653 459999999999999863
No 151
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.67 E-value=0.61 Score=45.31 Aligned_cols=40 Identities=8% Similarity=0.101 Sum_probs=33.5
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCcchHHhh
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGLTEGTVT 191 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~~a~~~ 191 (224)
...+++|||+|+.|...+.+....-.. .++++++++.+..
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~a 204 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQV 204 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 589999999999999999998876654 8999998776543
No 152
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=91.66 E-value=0.38 Score=42.86 Aligned_cols=63 Identities=17% Similarity=0.131 Sum_probs=46.2
Q ss_pred CcEEEEEecCHhH-HHHHHHHHHhCC---c-EEEeCCcchHHhhhhccC---CC--ccccccc--CcEEEEeccc
Q psy13395 153 DLVLAIMGSGAQA-YIHAKAFHASLK---L-KKYNRGLTEGTVTGSTKK---GM--ATEDVIT--AKLIYDKYQA 215 (224)
Q Consensus 153 ~~~l~iiGaG~QA-~~hl~a~~~v~~---i-~v~~R~~~~a~~~a~~~~---g~--~~~~v~~--advvv~~~~~ 215 (224)
..+++|||+|..+ ..|+.++..... + -+++|+++++++|+++.. .+ ..+.+.. -|+|+-+|..
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~ 77 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPN 77 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCC
Confidence 5689999999665 679999988754 3 999999999999998642 12 2333332 5888877763
No 153
>PRK06223 malate dehydrogenase; Reviewed
Probab=91.55 E-value=0.36 Score=43.10 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=43.7
Q ss_pred cEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhc------cCC--------CcccccccCcEEEEecc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGST------KKG--------MATEDVITAKLIYDKYQ 214 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~------~~g--------~~~~~v~~advvv~~~~ 214 (224)
.+++|||+|.+|...+..+...- .+.++++++++++..+.. ..+ -..+++.+||+||.+-+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aDiVii~~~ 79 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSDVVVITAG 79 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCCEEEECCC
Confidence 57999999999999888776532 459999988876554321 011 13477899999998754
No 154
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=91.50 E-value=0.32 Score=44.56 Aligned_cols=62 Identities=16% Similarity=0.062 Sum_probs=41.4
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC--CCcccccccCcEEEEecc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK--GMATEDVITAKLIYDKYQ 214 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~--g~~~~~v~~advvv~~~~ 214 (224)
.++|+|||.|.+|+.-.+-+.... ++..|+|...+......... .-..+-+.+||||+.-+-
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~P 206 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLP 206 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCC
Confidence 779999999999998887765542 34999994444322222111 225667779999987553
No 155
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=91.48 E-value=0.41 Score=36.72 Aligned_cols=61 Identities=11% Similarity=0.155 Sum_probs=39.9
Q ss_pred EEEEEe-cCHhHHHHHHHHHHhCC--c-EEEeCCcchHHhhhhccC--------CCcccccc--cCcEEEEeccc
Q psy13395 155 VLAIMG-SGAQAYIHAKAFHASLK--L-KKYNRGLTEGTVTGSTKK--------GMATEDVI--TAKLIYDKYQA 215 (224)
Q Consensus 155 ~l~iiG-aG~QA~~hl~a~~~v~~--i-~v~~R~~~~a~~~a~~~~--------g~~~~~v~--~advvv~~~~~ 215 (224)
+++|+| +|..++.+++++...-. + .+++++.++.+.+..... .+..+.+. ++|+|+.++..
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~ 75 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPH 75 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCc
Confidence 479999 59999999999888543 4 677776555444443211 12223333 89999998764
No 156
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.45 E-value=0.41 Score=43.61 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=43.0
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhh-------c--cCC-------------C----cccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGS-------T--KKG-------------M----ATEDVI 204 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~-------~--~~g-------------~----~~~~v~ 204 (224)
.-++++|||+|.+|.--...+... +++.+|+++++.+++-.. + ..| + ..+++.
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 357899999999998777766665 677999999665432211 0 001 0 234899
Q ss_pred cCcEEEEec
Q psy13395 205 TAKLIYDKY 213 (224)
Q Consensus 205 ~advvv~~~ 213 (224)
++|+||.+-
T Consensus 82 ~~DlVIEAv 90 (307)
T COG1250 82 DADLVIEAV 90 (307)
T ss_pred cCCEEEEec
Confidence 999999874
No 157
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=91.30 E-value=0.34 Score=45.70 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=43.0
Q ss_pred EEEEEecCHhHHH--HHHHHH---HhC--CcEEEeCCcchHHhhhhc------cCCC---------cccccccCcEEEEe
Q psy13395 155 VLAIMGSGAQAYI--HAKAFH---ASL--KLKKYNRGLTEGTVTGST------KKGM---------ATEDVITAKLIYDK 212 (224)
Q Consensus 155 ~l~iiGaG~QA~~--hl~a~~---~v~--~i~v~~R~~~~a~~~a~~------~~g~---------~~~~v~~advvv~~ 212 (224)
+++|||+|..+.. .++.+. ... .+.+|++++++++..... ..+. ..+++.+||+||.+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~a 81 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINT 81 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEe
Confidence 5899999998765 333444 222 249999999988766541 1111 25788999999999
Q ss_pred cccc
Q psy13395 213 YQAQ 216 (224)
Q Consensus 213 ~~~~ 216 (224)
.+.+
T Consensus 82 i~~~ 85 (423)
T cd05297 82 IQVG 85 (423)
T ss_pred eEec
Confidence 9864
No 158
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.21 E-value=0.52 Score=42.52 Aligned_cols=62 Identities=15% Similarity=0.011 Sum_probs=45.8
Q ss_pred EEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHh----hhhcc--C------CCcccccccCcEEEEecccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTV----TGSTK--K------GMATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~----~a~~~--~------g~~~~~v~~advvv~~~~~~ 216 (224)
+++|||+|..|...+.++..... +.++++++++++. +.+.. . .-..+++.+||+||.+.+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~ 78 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN 78 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence 58999999999998888776542 3999999987765 33211 0 01457899999999988764
No 159
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=91.21 E-value=0.35 Score=44.57 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=44.2
Q ss_pred EEEEEecCHhHHHHHHHHHHh---------CCcEEEeC-----CcchHHhhhhcc------CCC-----------ccccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHAS---------LKLKKYNR-----GLTEGTVTGSTK------KGM-----------ATEDV 203 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v---------~~i~v~~R-----~~~~a~~~a~~~------~g~-----------~~~~v 203 (224)
+++|||+|.-|.+-...+..- .++++|.| +.+-.+.+.+.+ .|+ ..+++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 479999999999999988763 34599999 334444444321 132 24567
Q ss_pred ccCcEEEEeccccc
Q psy13395 204 ITAKLIYDKYQAQH 217 (224)
Q Consensus 204 ~~advvv~~~~~~~ 217 (224)
.+||+||-++-.|.
T Consensus 81 ~~ADiIIlAVPs~~ 94 (342)
T TIGR03376 81 KGADILVFVIPHQF 94 (342)
T ss_pred hcCCEEEEECChHH
Confidence 89999999987764
No 160
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=91.19 E-value=0.37 Score=44.73 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=40.6
Q ss_pred CCcEEEEEe-cCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395 152 KDLVLAIMG-SGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiG-aG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~ 215 (224)
+..+++||| +|.+|.+-.+++...- ++.+|+|+.. ....+.+.++|+||.++--
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~----------~~~~~~~~~aDlVilavP~ 152 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW----------DRAEDILADAGMVIVSVPI 152 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc----------hhHHHHHhcCCEEEEeCcH
Confidence 668999999 9999999999998753 3599998642 1123446688888887643
No 161
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.15 E-value=0.5 Score=44.46 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=46.7
Q ss_pred cEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc-----------------CCC--cccccccCcEEEEec
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK-----------------KGM--ATEDVITAKLIYDKY 213 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~-----------------~g~--~~~~v~~advvv~~~ 213 (224)
.+++|||.|.+|......+... +++.+|++++++.+.+.+.. .|. ...++.++|+||.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 5799999999999999998886 44699999999998865321 111 112345899999887
Q ss_pred cc
Q psy13395 214 QA 215 (224)
Q Consensus 214 ~~ 215 (224)
..
T Consensus 84 pt 85 (415)
T PRK11064 84 PT 85 (415)
T ss_pred CC
Confidence 75
No 162
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=91.15 E-value=0.36 Score=42.28 Aligned_cols=61 Identities=13% Similarity=0.010 Sum_probs=41.9
Q ss_pred cEEEEEecCHhHHHHHHHHHHhC---C--cEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASL---K--LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~---~--i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
.+++|||+|.+|..-++++..-- + +++++|+.++. ......-..+.+.++|+||-++..|+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~D~Vilavkp~~ 69 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT---PFVYLQSNEELAKTCDIIVLAVKPDL 69 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC---CeEEeCChHHHHHhCCEEEEEeCHHH
Confidence 47999999999999999998753 2 37777766542 11111113344668999999887765
No 163
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=91.05 E-value=0.67 Score=40.34 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=49.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcch-HHhhhhc------cCCCcccccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTE-GTVTGST------KKGMATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~-a~~~a~~------~~g~~~~~v~~advvv~~~~~~ 216 (224)
+.++++|||.|.+|..-++.|+..-. ++|+++.... .+.++.. ...+..+++.++++||.+|...
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~ 96 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDE 96 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCH
Confidence 46799999999999999998888543 5999887642 3445431 2245788899999999999754
No 164
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=90.87 E-value=0.79 Score=37.23 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=22.7
Q ss_pred EEEEEecCHhHHHHHHHHHHhCCc---EEEeC
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASLKL---KKYNR 183 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R 183 (224)
+++|+|+|.+|+.+++++.....+ .+.++
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 689999999999999998764333 55553
No 165
>PRK11579 putative oxidoreductase; Provisional
Probab=90.81 E-value=0.5 Score=42.89 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=40.5
Q ss_pred CcEEEEEecCHhHH-HHHHHHHHhCCc---EEEeCCcchHHh-hhh-ccCCCcccccc---cCcEEEEeccc
Q psy13395 153 DLVLAIMGSGAQAY-IHAKAFHASLKL---KKYNRGLTEGTV-TGS-TKKGMATEDVI---TAKLIYDKYQA 215 (224)
Q Consensus 153 ~~~l~iiGaG~QA~-~hl~a~~~v~~i---~v~~R~~~~a~~-~a~-~~~g~~~~~v~---~advvv~~~~~ 215 (224)
.-+++|||+|.+|+ .|+.++...-.+ -|++++++++++ +.. .... ..+++. +-|+|+-+|..
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~-~~~ell~~~~vD~V~I~tp~ 74 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVS-EPQHLFNDPNIDLIVIPTPN 74 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeC-CHHHHhcCCCCCEEEEcCCc
Confidence 46899999999998 688888775433 889999877642 111 0011 233332 46888888763
No 166
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=90.81 E-value=0.5 Score=42.51 Aligned_cols=62 Identities=15% Similarity=0.212 Sum_probs=43.6
Q ss_pred cEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhccC------C-------------CcccccccCcEEEEec
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTKK------G-------------MATEDVITAKLIYDKY 213 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~~------g-------------~~~~~v~~advvv~~~ 213 (224)
.+++|||+|.+|..-...+... +++.+|+|++. .+.+.+... + ...+++..+|+||.++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEe
Confidence 3699999999999999988776 34688999753 344443110 0 1235677899999988
Q ss_pred ccc
Q psy13395 214 QAQ 216 (224)
Q Consensus 214 ~~~ 216 (224)
..+
T Consensus 82 k~~ 84 (341)
T PRK08229 82 KSA 84 (341)
T ss_pred cCc
Confidence 665
No 167
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=90.75 E-value=0.4 Score=43.93 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=44.8
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcc-hHHhhh-hccCCCcccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLT-EGTVTG-STKKGMATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~-~a~~~a-~~~~g~~~~~v~~advvv~~~~ 214 (224)
.-++++|||.|.+|+.-.+-+. .|.. ..|+|++. ..++.. -+... ..+-+.+||+|+-...
T Consensus 145 ~gktvGIiG~GrIG~avA~r~~-~Fgm~v~y~~~~~~~~~~~~~~~~y~~-l~ell~~sDii~l~~P 209 (324)
T COG1052 145 RGKTLGIIGLGRIGQAVARRLK-GFGMKVLYYDRSPNPEAEKELGARYVD-LDELLAESDIISLHCP 209 (324)
T ss_pred CCCEEEEECCCHHHHHHHHHHh-cCCCEEEEECCCCChHHHhhcCceecc-HHHHHHhCCEEEEeCC
Confidence 5899999999999999999988 6763 88898874 122222 12223 7788889999987543
No 168
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=90.72 E-value=0.56 Score=43.07 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=40.8
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhCC--c-EEEeCCc-chHHhhhhccCCC--cccccccCcEEEEecc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASLK--L-KKYNRGL-TEGTVTGSTKKGM--ATEDVITAKLIYDKYQ 214 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~~--i-~v~~R~~-~~a~~~a~~~~g~--~~~~v~~advvv~~~~ 214 (224)
.-+++|+|+|.+|+.|++++...-. + -+|+|++ +++...... ... ..+.+.+.|+|+-.|.
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v-~~~~d~~e~l~~iDVViIctP 69 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPV-YAVADDEKHLDDVDVLILCMG 69 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCc-cccCCHHHhccCCCEEEEcCC
Confidence 4689999999999999999886422 3 7899986 443321111 111 2344567899988764
No 169
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.49 E-value=0.46 Score=43.04 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=42.7
Q ss_pred CCcEEEEEe-cCHhHHHHHHHHHHhC-CcEEE-eCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMG-SGAQAYIHAKAFHASL-KLKKY-NRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiG-aG~QA~~hl~a~~~v~-~i~v~-~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++||| .|.+|+-..+.|.... .+.+| +|+++ ..+.+.+|||||++++..+
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~------------l~e~~~~ADIVIsavg~~~ 213 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD------------LPAVCRRADILVAAVGRPE 213 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC------------HHHHHhcCCEEEEecCChh
Confidence 689999999 9999999988887643 34999 58762 3556778999999988654
No 170
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.36 E-value=0.66 Score=43.21 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=51.8
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC-------------cccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM-------------ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~-------------~~~~v~~advvv~~~~~~~ 217 (224)
..+++.|+|+|..|+.-++.+...- ++.+.++++++.+.+.+...++ ....+.+||.||..+....
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~ 309 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDE 309 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcH
Confidence 4789999999999999999877632 3499999999887776532221 3567789999999887655
Q ss_pred cc
Q psy13395 218 SN 219 (224)
Q Consensus 218 ~~ 219 (224)
.|
T Consensus 310 ~n 311 (453)
T PRK09496 310 AN 311 (453)
T ss_pred HH
Confidence 44
No 171
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=90.23 E-value=0.51 Score=43.48 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=41.9
Q ss_pred EEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhcc-----------------CCC-----cccccccCcEEE
Q psy13395 156 LAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTK-----------------KGM-----ATEDVITAKLIY 210 (224)
Q Consensus 156 l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~-----------------~g~-----~~~~v~~advvv 210 (224)
++|+|+|.+|+.|++++...-.+ -|.+.+++.+..++... .++ ..+-+.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 58999999999999998764223 67777777655555411 011 223346899999
Q ss_pred Eecccc
Q psy13395 211 DKYQAQ 216 (224)
Q Consensus 211 ~~~~~~ 216 (224)
.+|+..
T Consensus 81 e~Tp~~ 86 (333)
T TIGR01546 81 DATPGG 86 (333)
T ss_pred ECCCCC
Confidence 988754
No 172
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.13 E-value=0.68 Score=42.03 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=42.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhhh------ccCC--------CcccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTGS------TKKG--------MATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a~------~~~g--------~~~~~v~~advvv~~~~ 214 (224)
+..+++|||+|.++..-...+. ..+ +.+++++++.++..+- ...+ -..+++.+||+||.+-+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~-~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~ADiVVitag 82 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLIL-QKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKDSDVVVITAG 82 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHH-HCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhCCCCEEEECCC
Confidence 4568999999999988555443 334 3899999876543221 1111 14568999999998765
Q ss_pred c
Q psy13395 215 A 215 (224)
Q Consensus 215 ~ 215 (224)
.
T Consensus 83 ~ 83 (319)
T PTZ00117 83 V 83 (319)
T ss_pred C
Confidence 4
No 173
>PLN02712 arogenate dehydrogenase
Probab=90.04 E-value=0.61 Score=46.70 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=42.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----cccc-cc-cCcEEEEeccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATED-VI-TAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~~-v~-~advvv~~~~~ 215 (224)
...+++|||+|.+|.+..+++...- .+.+|+|+.+. +. +.+ .|+ ..++ +. .+|+||.++-.
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~-a~~-~Gv~~~~~~~el~~~~aDvVILavP~ 435 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DE-AQK-LGVSYFSDADDLCEEHPEVILLCTSI 435 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HH-HHH-cCCeEeCCHHHHHhcCCCEEEECCCh
Confidence 4678999999999999999998742 35899998643 22 222 333 2233 33 58999998764
No 174
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=90.02 E-value=0.61 Score=45.35 Aligned_cols=65 Identities=9% Similarity=0.102 Sum_probs=47.9
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC--CCcccc-----cccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK--GMATED-----VITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~--g~~~~~-----v~~advvv~~~~~~ 216 (224)
..++++|+|+|..|+.-+.++...- .+.++||+.++++.+++... .+..++ ...+||||.+|...
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vG 450 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVG 450 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCC
Confidence 4578999999999999999988753 35899999999999987432 111111 23579999888655
No 175
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.68 E-value=0.66 Score=42.03 Aligned_cols=61 Identities=15% Similarity=0.048 Sum_probs=44.2
Q ss_pred EEEEEecCHhHHHHHHHHHHhCCc----EEEeCCcchHHhhhhc------cC---CC-----cccccccCcEEEEecccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASLKL----KKYNRGLTEGTVTGST------KK---GM-----ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~~i----~v~~R~~~~a~~~a~~------~~---g~-----~~~~v~~advvv~~~~~~ 216 (224)
.++|||+|..|...+.++.. .++ .+++.++++++.-+.. .. .+ ..+++.+|||||-+-+..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~ 79 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-LGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPS 79 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCC
Confidence 37999999999988777665 443 8999988776544421 11 11 578999999999887763
No 176
>PRK07574 formate dehydrogenase; Provisional
Probab=89.54 E-value=0.76 Score=43.07 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=42.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhh---ccCCCcccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGS---TKKGMATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~---~~~g~~~~~v~~advvv~~~~ 214 (224)
.-++|+|||.|.+|+.-++.+.. +. +..|+|+....+...+ ....-..+.+.++|||+....
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~-fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lP 257 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKP-FDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCP 257 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-CCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCC
Confidence 45789999999999999888775 44 3889998643322211 111124566789999998764
No 177
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=89.39 E-value=0.54 Score=41.15 Aligned_cols=61 Identities=13% Similarity=0.059 Sum_probs=44.3
Q ss_pred EEEEec-CHhHHHHHHHHHHhC--C---cEEEeCCcchHHhhhhc------cC-C--C-----cccccccCcEEEEeccc
Q psy13395 156 LAIMGS-GAQAYIHAKAFHASL--K---LKKYNRGLTEGTVTGST------KK-G--M-----ATEDVITAKLIYDKYQA 215 (224)
Q Consensus 156 l~iiGa-G~QA~~hl~a~~~v~--~---i~v~~R~~~~a~~~a~~------~~-g--~-----~~~~v~~advvv~~~~~ 215 (224)
++|||+ |..+..-+..+...- . +.++++++++++..+.. .. . + ..+++.+||+||.+.+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999988888776544 2 38999998887665431 11 1 1 26889999999998776
Q ss_pred c
Q psy13395 216 Q 216 (224)
Q Consensus 216 ~ 216 (224)
.
T Consensus 81 ~ 81 (263)
T cd00650 81 G 81 (263)
T ss_pred C
Confidence 4
No 178
>PLN02928 oxidoreductase family protein
Probab=89.14 E-value=0.83 Score=42.04 Aligned_cols=62 Identities=18% Similarity=0.036 Sum_probs=42.5
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhh------------hhc--cCCCcccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVT------------GST--KKGMATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~------------a~~--~~g~~~~~v~~advvv~~~~ 214 (224)
..++++|||.|.+|+.-.+.+.. +. +.+|+|+....... ... ...-..+.+.+||||+....
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~a-fG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lP 235 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRP-FGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCT 235 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhh-CCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCC
Confidence 56899999999999999888764 44 48888874332111 000 11124677789999998764
No 179
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=89.06 E-value=0.7 Score=39.09 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=43.9
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCC-------------------cchHHhhhhccC-------------C
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRG-------------------LTEGTVTGSTKK-------------G 197 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~-------------------~~~a~~~a~~~~-------------g 197 (224)
...+++|+|+|..|..-++.+...- .+.+++++ ..|+++++++.. .
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 99 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKER 99 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhc
Confidence 5678999999999999999887754 24777766 345555554211 1
Q ss_pred Cc----ccccccCcEEEEeccc
Q psy13395 198 MA----TEDVITAKLIYDKYQA 215 (224)
Q Consensus 198 ~~----~~~v~~advvv~~~~~ 215 (224)
+. .+.+.++|+||.++..
T Consensus 100 i~~~~~~~~~~~~D~Vi~~~d~ 121 (202)
T TIGR02356 100 VTAENLELLINNVDLVLDCTDN 121 (202)
T ss_pred CCHHHHHHHHhCCCEEEECCCC
Confidence 11 2346789999998754
No 180
>PRK10206 putative oxidoreductase; Provisional
Probab=88.97 E-value=0.58 Score=42.70 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=40.4
Q ss_pred cEEEEEecCHhH-HHHHHHHHHhCC---c-EEEeCCcchHHhhhhccCCC----cccccc---cCcEEEEeccc
Q psy13395 154 LVLAIMGSGAQA-YIHAKAFHASLK---L-KKYNRGLTEGTVTGSTKKGM----ATEDVI---TAKLIYDKYQA 215 (224)
Q Consensus 154 ~~l~iiGaG~QA-~~hl~a~~~v~~---i-~v~~R~~~~a~~~a~~~~g~----~~~~v~---~advvv~~~~~ 215 (224)
-+++|||+|..+ +.|+.++....+ + -|++++++++ +++++..+. ..+++- +-|+|+-+|-.
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~ 74 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHA 74 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCc
Confidence 479999999977 578987755433 3 8999998654 566543222 233332 46888887754
No 181
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=88.97 E-value=0.97 Score=41.17 Aligned_cols=62 Identities=11% Similarity=0.045 Sum_probs=42.2
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhhh------ccCC--------CcccccccCcEEEEeccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTGS------TKKG--------MATEDVITAKLIYDKYQA 215 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a~------~~~g--------~~~~~v~~advvv~~~~~ 215 (224)
..+++|||+|.++..-...+. ... +.+++++++.++..+- ...+ -..+++.+||+||.+-+.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la-~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~~aDiVI~tag~ 84 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIV-LKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIAGSDVVIVTAGL 84 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhCCCCEEEECCCC
Confidence 468999999999876655433 233 4999999986532221 1111 145899999999997765
No 182
>PRK08818 prephenate dehydrogenase; Provisional
Probab=88.74 E-value=0.89 Score=42.43 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=39.2
Q ss_pred CcEEEEEec-CHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395 153 DLVLAIMGS-GAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA 215 (224)
Q Consensus 153 ~~~l~iiGa-G~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~ 215 (224)
..+++|||. |.+|.+-.+++...... ..|+|..+. ..-..+.+.++|+||-++--
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~--------~~~~~~~v~~aDlVilavPv 61 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG--------SLDPATLLQRADVLIFSAPI 61 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc--------cCCHHHHhcCCCEEEEeCCH
Confidence 568999999 99999999999976544 555553111 11134567899999988743
No 183
>PRK06436 glycerate dehydrogenase; Provisional
Probab=88.67 E-value=0.84 Score=41.32 Aligned_cols=61 Identities=13% Similarity=0.095 Sum_probs=41.1
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~ 215 (224)
.-++++|||.|.+|+.-.+.+. .+. +.+|+|+.... .+ .....-..+.+.++|+|+.....
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~-afG~~V~~~~r~~~~~-~~-~~~~~~l~ell~~aDiv~~~lp~ 183 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAK-AFGMNIYAYTRSYVND-GI-SSIYMEPEDIMKKSDFVLISLPL 183 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHH-HCCCEEEEECCCCccc-Cc-ccccCCHHHHHhhCCEEEECCCC
Confidence 5799999999999999988654 454 48999875321 11 11011245556799999986553
No 184
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=88.62 E-value=1.3 Score=37.32 Aligned_cols=61 Identities=10% Similarity=0.171 Sum_probs=44.0
Q ss_pred EEEEec-CHhHHHHHHHHHHhCC--cEEEeCCcch--HHhhhhc-----cCCC-----cccccccCcEEEEeccccc
Q psy13395 156 LAIMGS-GAQAYIHAKAFHASLK--LKKYNRGLTE--GTVTGST-----KKGM-----ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 156 l~iiGa-G~QA~~hl~a~~~v~~--i~v~~R~~~~--a~~~a~~-----~~g~-----~~~~v~~advvv~~~~~~~ 217 (224)
++|+|+ |.||+.-++++.. .. +++..|++.+ ++.|... ...+ ..+++.++|.|+..+...|
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~ 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence 689995 9999999999999 43 3888888743 4444431 0111 5778899999999998653
No 185
>PLN02712 arogenate dehydrogenase
Probab=88.58 E-value=0.93 Score=45.41 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=42.6
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----cccc-c-ccCcEEEEecccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATED-V-ITAKLIYDKYQAQ 216 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~~-v-~~advvv~~~~~~ 216 (224)
..+++|||+|.+|.+..+++...- .+.+|+|+... + .+.. .|+ ..++ + .++||||-++..+
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~-~A~~-~Gv~~~~d~~e~~~~~aDvViLavP~~ 119 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-L-AARS-LGVSFFLDPHDLCERHPDVILLCTSII 119 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-H-HHHH-cCCEEeCCHHHHhhcCCCEEEEcCCHH
Confidence 468999999999999999998753 35889998543 2 2322 233 2222 3 3699999988654
No 186
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.44 E-value=0.8 Score=41.63 Aligned_cols=55 Identities=9% Similarity=-0.016 Sum_probs=41.7
Q ss_pred CCcEEEEEecC-HhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSG-AQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG-~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
.-++++|||.| .+|+-....+..-- .+.+|++... -..+.+++|||||++.+..+
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~-----------~l~e~~~~ADIVIsavg~~~ 214 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST-----------DAKALCRQADIVVAAVGRPR 214 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC-----------CHHHHHhcCCEEEEecCChh
Confidence 68999999996 99988888876543 2499977654 24556778999999887643
No 187
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=88.42 E-value=0.98 Score=39.77 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=43.8
Q ss_pred EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc-----C-C--------C-cc-cccccCcEEEEecccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK-----K-G--------M-AT-EDVITAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~-----~-g--------~-~~-~~v~~advvv~~~~~~ 216 (224)
+++|||+|.+|......+...- .+.+|.| .++.+++.+.. . + . .. +.+..+|+||-++.++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 5899999999999999988764 3589999 77777665421 0 0 0 12 2347899999988765
No 188
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=88.38 E-value=0.53 Score=45.29 Aligned_cols=63 Identities=21% Similarity=0.177 Sum_probs=37.3
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCcc-------hHHhhhhc--cCCCcccccccCcEEEEeccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGLT-------EGTVTGST--KKGMATEDVITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~-------~a~~~a~~--~~g~~~~~v~~advvv~~~~~ 215 (224)
..++|+|||+|.||+.|..-+.. ..+ .+++-.+. ..+...+. ..+-..+++..||+|+..+..
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrd-SGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPD 107 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRD-SGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPD 107 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCcc-ccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCCh
Confidence 46899999999999966655322 223 33332221 11111111 112268889999999987653
No 189
>PLN02602 lactate dehydrogenase
Probab=88.09 E-value=1.1 Score=41.57 Aligned_cols=61 Identities=10% Similarity=-0.067 Sum_probs=44.7
Q ss_pred cEEEEEecCHhHHHHHHHHHHhCCc----EEEeCCcchHHhhhhc------cCC-------CcccccccCcEEEEeccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASLKL----KKYNRGLTEGTVTGST------KKG-------MATEDVITAKLIYDKYQA 215 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~~i----~v~~R~~~~a~~~a~~------~~g-------~~~~~v~~advvv~~~~~ 215 (224)
..++|||+|..|..-+..+.. .++ .++++++++++..+.. ..+ -..+++.+|||||-+-+.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~~~daDiVVitAG~ 115 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-QDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVTAGSDLCIVTAGA 115 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHHhCCCCEEEECCCC
Confidence 699999999999888876653 343 9999988877555431 111 145778999999988665
No 190
>PLN02306 hydroxypyruvate reductase
Probab=88.05 E-value=1.1 Score=42.09 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=42.2
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchH-Hhhhhc----------------cCCCcccccccCcEEEEe
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEG-TVTGST----------------KKGMATEDVITAKLIYDK 212 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a-~~~a~~----------------~~g~~~~~v~~advvv~~ 212 (224)
.-++++|||.|.+|+.-.+.+...|.. ..|+|++... +.+... ...-..+.+.+||||+..
T Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh 243 (386)
T PLN02306 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLH 243 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEe
Confidence 568999999999999999887655654 7788876422 211110 001145667899999986
Q ss_pred cc
Q psy13395 213 YQ 214 (224)
Q Consensus 213 ~~ 214 (224)
..
T Consensus 244 ~P 245 (386)
T PLN02306 244 PV 245 (386)
T ss_pred CC
Confidence 43
No 191
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.99 E-value=1.9 Score=36.41 Aligned_cols=61 Identities=15% Similarity=0.073 Sum_probs=43.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccC--CCcccccc--cCcEEEEe
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKK--GMATEDVI--TAKLIYDK 212 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~--g~~~~~v~--~advvv~~ 212 (224)
..++++|+|.|.+|+.-.+.+...-- +.++++++++.+.+++... .+..+++. ++||++.+
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~ 92 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPC 92 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEec
Confidence 46899999999999999998877533 4889999988887766421 11222222 68999844
No 192
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=87.82 E-value=1.7 Score=33.87 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=39.4
Q ss_pred EEEEEec-CHhHHHHHHHHHHhCCc---EEEeCCcc-h-HHhhhh----ccCCC-----cccccccCcEEEEeccc
Q psy13395 155 VLAIMGS-GAQAYIHAKAFHASLKL---KKYNRGLT-E-GTVTGS----TKKGM-----ATEDVITAKLIYDKYQA 215 (224)
Q Consensus 155 ~l~iiGa-G~QA~~hl~a~~~v~~i---~v~~R~~~-~-a~~~a~----~~~g~-----~~~~v~~advvv~~~~~ 215 (224)
+++|+|+ |.+|+.-++++..-... -+++|.++ . .+...+ ...|+ ..+.+.++||||..|..
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~p 77 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTNP 77 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-H
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCCh
Confidence 6899999 99999999999985554 66667662 1 122221 11232 45556679999998854
No 193
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=87.15 E-value=1.3 Score=40.38 Aligned_cols=62 Identities=11% Similarity=0.041 Sum_probs=41.2
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchH--HhhhhccCCCcccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEG--TVTGSTKKGMATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a--~~~a~~~~g~~~~~v~~advvv~~~~ 214 (224)
..++++|||.|.+|+.-.+.+...|.. ..|+|..... +.+.-+ ..-..+.+.+||+|+....
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~-~~~l~ell~~sDvv~lh~p 209 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNAR-YCDLDTLLQESDFVCIILP 209 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcE-ecCHHHHHHhCCEEEEeCC
Confidence 568999999999999999887634554 6677764221 111111 1124566789999987654
No 194
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=87.11 E-value=1.1 Score=40.26 Aligned_cols=60 Identities=17% Similarity=0.064 Sum_probs=43.8
Q ss_pred EEEEecCHhHHHHHHHHHHhC--C-cEEEeCCcchHHhhhhccC------C-------CcccccccCcEEEEeccc
Q psy13395 156 LAIMGSGAQAYIHAKAFHASL--K-LKKYNRGLTEGTVTGSTKK------G-------MATEDVITAKLIYDKYQA 215 (224)
Q Consensus 156 l~iiGaG~QA~~hl~a~~~v~--~-i~v~~R~~~~a~~~a~~~~------g-------~~~~~v~~advvv~~~~~ 215 (224)
++|||+|..|..-+..+...- . +.++++++++++..+.... . -..+++.+|||||.+-+.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCC
Confidence 579999999988887665432 2 3999999998877765210 0 135799999999998765
No 195
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=87.08 E-value=1.6 Score=35.04 Aligned_cols=59 Identities=10% Similarity=0.111 Sum_probs=44.2
Q ss_pred EEEEec-CHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc----cCCC-----cccccccCcEEEEeccc
Q psy13395 156 LAIMGS-GAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST----KKGM-----ATEDVITAKLIYDKYQA 215 (224)
Q Consensus 156 l~iiGa-G~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~----~~g~-----~~~~v~~advvv~~~~~ 215 (224)
|+|+|+ |..|+.-++.+..-- ++++..|++++.+. ... ...+ ..+++.++|+||...+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 689995 999999999988765 24999999998887 211 1111 46677799999998763
No 196
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.96 E-value=1.9 Score=38.69 Aligned_cols=52 Identities=13% Similarity=0.009 Sum_probs=37.9
Q ss_pred CCcEEEEEecCH-hHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCCcccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGA-QAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~-QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~ 214 (224)
..++++|||+|. .|+.-..++..... +.+++|. .+.+ .+.+.+|||||.+|+
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~---t~~L--------~~~~~~aDIvI~AtG 211 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR---TQNL--------PELVKQADIIVGAVG 211 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC---chhH--------HHHhccCCEEEEccC
Confidence 678999999998 88888887765433 3777762 2222 234478999999996
No 197
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=86.83 E-value=0.92 Score=38.00 Aligned_cols=60 Identities=13% Similarity=0.147 Sum_probs=40.2
Q ss_pred EEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhccC-----CC------------------cccccccCcEEE
Q psy13395 155 VLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTKK-----GM------------------ATEDVITAKLIY 210 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~~-----g~------------------~~~~v~~advvv 210 (224)
+++|||.|-.|.-...+|... +++..|+.++++.+.+.+... |+ ..+++.++|+++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~~ 81 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVVF 81 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEEE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceEE
Confidence 689999999999999999888 456888999998888876211 11 255588999998
Q ss_pred Eecc
Q psy13395 211 DKYQ 214 (224)
Q Consensus 211 ~~~~ 214 (224)
-+-.
T Consensus 82 I~Vp 85 (185)
T PF03721_consen 82 ICVP 85 (185)
T ss_dssp E---
T ss_pred EecC
Confidence 7654
No 198
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.64 E-value=1.5 Score=40.94 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=48.1
Q ss_pred EEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc-----CC--C-----cccccccCcEEEEeccccccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK-----KG--M-----ATEDVITAKLIYDKYQAQHSN 219 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~-----~g--~-----~~~~v~~advvv~~~~~~~~~ 219 (224)
++.|+|+|..|+.-.+.+... .++.++++++++.+.+.+.. .| . ....+.++|.||.++.....|
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~n 79 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDETN 79 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHHH
Confidence 689999999999999988764 34599999999988876521 11 1 223478999999998765443
No 199
>PRK06270 homoserine dehydrogenase; Provisional
Probab=86.55 E-value=1.6 Score=40.04 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.8
Q ss_pred cEEEEEecCHhHHHHHHHHHHh
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHAS 175 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v 175 (224)
-+++|+|+|.+|+.+++.+...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999998765
No 200
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=86.52 E-value=2.3 Score=38.85 Aligned_cols=64 Identities=6% Similarity=0.069 Sum_probs=41.5
Q ss_pred cEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccC-C--C-c-c----c---cc---ccCcEEEEecccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKK-G--M-A-T----E---DV---ITAKLIYDKYQAQ 216 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~-g--~-~-~----~---~v---~~advvv~~~~~~ 216 (224)
.+++|+|+|++|...+.++...-. +.+.++++++.+...+... . . . . + ++ ..+|+||.+++.+
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~ 249 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSP 249 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCH
Confidence 399999999999998666555432 3666888877654433110 0 0 1 1 1 11 4699999999965
Q ss_pred c
Q psy13395 217 H 217 (224)
Q Consensus 217 ~ 217 (224)
+
T Consensus 250 ~ 250 (350)
T COG1063 250 P 250 (350)
T ss_pred H
Confidence 3
No 201
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=86.35 E-value=1.3 Score=42.95 Aligned_cols=62 Identities=19% Similarity=0.158 Sum_probs=41.5
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcc--hHHhhhhccCCCcccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLT--EGTVTGSTKKGMATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~--~a~~~a~~~~g~~~~~v~~advvv~~~~ 214 (224)
..++++|||.|.+|+.-.+.+.. +. +..|+|... .++.+.-....-..+.+.++|+|+....
T Consensus 137 ~gktvgIiG~G~IG~~vA~~l~~-fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lP 202 (525)
T TIGR01327 137 YGKTLGVIGLGRIGSIVAKRAKA-FGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTP 202 (525)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-CCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccC
Confidence 45799999999999999988765 44 488888532 2222211111124566779999997654
No 202
>KOG1370|consensus
Probab=86.10 E-value=1.1 Score=41.24 Aligned_cols=63 Identities=11% Similarity=0.064 Sum_probs=49.5
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhccCCC----cccccccCcEEEEecccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~ 216 (224)
.+.++|.|.|-.++-..+++..... +|+--..+...+|-..++|+ ..|+++++||+||+|+-.
T Consensus 214 GKv~Vv~GYGdVGKgCaqaLkg~g~-~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtTGc~ 280 (434)
T KOG1370|consen 214 GKVAVVCGYGDVGKGCAQALKGFGA-RVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTTGCK 280 (434)
T ss_pred ccEEEEeccCccchhHHHHHhhcCc-EEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEccCCc
Confidence 5789999999999999999877554 44444555666676667776 688899999999999853
No 203
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=85.83 E-value=1 Score=40.17 Aligned_cols=60 Identities=12% Similarity=0.029 Sum_probs=40.6
Q ss_pred EEEEecCHhHHHHHHHHHHh--CCcEEEeCCcchHHhhhh----c--cCC--------CcccccccCcEEEEeccc
Q psy13395 156 LAIMGSGAQAYIHAKAFHAS--LKLKKYNRGLTEGTVTGS----T--KKG--------MATEDVITAKLIYDKYQA 215 (224)
Q Consensus 156 l~iiGaG~QA~~hl~a~~~v--~~i~v~~R~~~~a~~~a~----~--~~g--------~~~~~v~~advvv~~~~~ 215 (224)
++|||+|.+|......+... ..+.+++++++.++..+- . ..+ -..+++.+||+||.+-+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEEEecCC
Confidence 58999999998877666532 245899999876543321 1 011 135789999999987653
No 204
>PRK10637 cysG siroheme synthase; Provisional
Probab=85.51 E-value=2.3 Score=40.55 Aligned_cols=66 Identities=14% Similarity=0.029 Sum_probs=49.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcc-hHHhhhhc------cCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLT-EGTVTGST------KKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~-~a~~~a~~------~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||.|..|..-++.|...-. +.|+++... ..+.+++. ...+..+++.++++||.+|....
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~ 84 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA 84 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH
Confidence 67899999999999999999988554 488887653 23444431 12457889999999999997643
No 205
>PRK06349 homoserine dehydrogenase; Provisional
Probab=85.50 E-value=1.5 Score=41.34 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=41.6
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhC---------Cc---EEEeCCcchHHhhhhccCCC--cccccc---cCcEEEEeccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASL---------KL---KKYNRGLTEGTVTGSTKKGM--ATEDVI---TAKLIYDKYQA 215 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~---------~i---~v~~R~~~~a~~~a~~~~g~--~~~~v~---~advvv~~~~~ 215 (224)
.-+++|+|+|.+|..+++.+.... .+ .|++|++++++.+.....-+ ..+++. +.||||..|+.
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~ 82 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGG 82 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCC
Confidence 458999999999999988875532 22 88999988765432110001 233333 57999988754
No 206
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=85.48 E-value=1.4 Score=42.86 Aligned_cols=63 Identities=10% Similarity=-0.041 Sum_probs=47.7
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC------CC-----cccccccCcEEEEeccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK------GM-----ATEDVITAKLIYDKYQA 215 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~------g~-----~~~~v~~advvv~~~~~ 215 (224)
..++.|+|+|..|+.-.+.+.+.. ++.++++++++.+.+.+... +. ....+.+||.|+.++..
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~ 491 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPN 491 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCC
Confidence 368899999999999999987753 45999999999888865211 11 34567799988777654
No 207
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=85.39 E-value=1.9 Score=39.46 Aligned_cols=65 Identities=12% Similarity=0.042 Sum_probs=44.0
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHHh--CC------cEEEeCCc--chHHhhhh----cc----CCC-----cccccccCc
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHAS--LK------LKKYNRGL--TEGTVTGS----TK----KGM-----ATEDVITAK 207 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~v--~~------i~v~~R~~--~~a~~~a~----~~----~g~-----~~~~v~~ad 207 (224)
++-+++|||+ |..|..-+..+..- +. +.++++.+ ++++..+. .. .++ ..+++.+||
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daD 81 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVD 81 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCC
Confidence 6889999998 99998877766532 22 38888854 33443332 11 011 579999999
Q ss_pred EEEEecccc
Q psy13395 208 LIYDKYQAQ 216 (224)
Q Consensus 208 vvv~~~~~~ 216 (224)
|||.+-+..
T Consensus 82 vVVitAG~~ 90 (323)
T TIGR01759 82 AALLVGAFP 90 (323)
T ss_pred EEEEeCCCC
Confidence 999877653
No 208
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=85.27 E-value=1.2 Score=44.78 Aligned_cols=62 Identities=10% Similarity=0.017 Sum_probs=42.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHH--hCCcEEEeCCcchHHhhhh--------c-cCC-----------------Cccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHA--SLKLKKYNRGLTEGTVTGS--------T-KKG-----------------MATEDV 203 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~--v~~i~v~~R~~~~a~~~a~--------~-~~g-----------------~~~~~v 203 (224)
+-++|+|||+|.+|..-...+.. =+++.+|+++++..+.-.+ . ..| ...+++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 382 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGF 382 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHh
Confidence 34689999999999988877653 3556999999875433211 0 011 134678
Q ss_pred ccCcEEEEec
Q psy13395 204 ITAKLIYDKY 213 (224)
Q Consensus 204 ~~advvv~~~ 213 (224)
.+||+||.+-
T Consensus 383 ~~adlViEav 392 (699)
T TIGR02440 383 KDVDIVIEAV 392 (699)
T ss_pred ccCCEEEEec
Confidence 8999999873
No 209
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=84.98 E-value=1.2 Score=44.89 Aligned_cols=62 Identities=8% Similarity=0.028 Sum_probs=43.3
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhh-------c--cCC-----------------Ccccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGS-------T--KKG-----------------MATEDVI 204 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~-------~--~~g-----------------~~~~~v~ 204 (224)
+.++++|||+|.+|..-...++.. +++.+|+++++..++-.+ . ..| ...+++.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 391 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFD 391 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhc
Confidence 567899999999998888776654 234999999887543211 0 011 1346789
Q ss_pred cCcEEEEec
Q psy13395 205 TAKLIYDKY 213 (224)
Q Consensus 205 ~advvv~~~ 213 (224)
++|+||.+-
T Consensus 392 ~aDlViEav 400 (714)
T TIGR02437 392 NVDIVVEAV 400 (714)
T ss_pred CCCEEEEcC
Confidence 999999873
No 210
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=84.69 E-value=1.7 Score=39.67 Aligned_cols=59 Identities=15% Similarity=0.056 Sum_probs=41.9
Q ss_pred EEEEEecCHhHHHHHHHHHHhCCc----EEEeCCcchHHhhhhcc------CCC--------cccccccCcEEEEecc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASLKL----KKYNRGLTEGTVTGSTK------KGM--------ATEDVITAKLIYDKYQ 214 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~~i----~v~~R~~~~a~~~a~~~------~g~--------~~~~v~~advvv~~~~ 214 (224)
.|+|||+|..|...+.++ ....+ .+++..++.++-.+... .+. ..+++.+|||||-+-+
T Consensus 2 KVaviGaG~VG~s~a~~l-~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG 78 (313)
T COG0039 2 KVAVIGAGNVGSSLAFLL-LLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAG 78 (313)
T ss_pred eEEEECCChHHHHHHHHH-hcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCC
Confidence 689999999999998888 44443 89999977665444311 111 2789999999876543
No 211
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=84.36 E-value=4.4 Score=36.43 Aligned_cols=63 Identities=16% Similarity=0.244 Sum_probs=42.3
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~ 215 (224)
...+|+|+|+|..|...++.+.... .+.+.++++++.+.+.+..... ..+. ..+|+||..++.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~-~g~d~viD~~G~ 232 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPED-LAVDHAFECVGG 232 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhc-cCCcEEEECCCC
Confidence 4679999999999999888777643 2467788887765443211001 1111 258999999984
No 212
>PRK05442 malate dehydrogenase; Provisional
Probab=84.26 E-value=2.2 Score=38.99 Aligned_cols=64 Identities=13% Similarity=0.001 Sum_probs=42.4
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHH--hCC------cEEEeCCc--chHHhhh----hcc----CC-----CcccccccCc
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHA--SLK------LKKYNRGL--TEGTVTG----STK----KG-----MATEDVITAK 207 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~--v~~------i~v~~R~~--~~a~~~a----~~~----~g-----~~~~~v~~ad 207 (224)
++.+++|||+ |..|..-+..+.. ++. +.+++.++ ++++..+ +.. .. =..+++.+||
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daD 82 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDAD 82 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCC
Confidence 6889999998 9999887665443 222 38888844 3343333 211 01 1569999999
Q ss_pred EEEEeccc
Q psy13395 208 LIYDKYQA 215 (224)
Q Consensus 208 vvv~~~~~ 215 (224)
|||.+-+.
T Consensus 83 iVVitaG~ 90 (326)
T PRK05442 83 VALLVGAR 90 (326)
T ss_pred EEEEeCCC
Confidence 99987664
No 213
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=83.85 E-value=2.1 Score=40.16 Aligned_cols=61 Identities=8% Similarity=-0.021 Sum_probs=40.5
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~ 215 (224)
..++|+|||.|.+|+.-.+.+.. +.. .+|++.....+. . ....-..+.+.++|||+..+--
T Consensus 115 ~gktvGIIG~G~IG~~va~~l~a-~G~~V~~~Dp~~~~~~~-~-~~~~~l~ell~~aDiV~lh~Pl 177 (381)
T PRK00257 115 AERTYGVVGAGHVGGRLVRVLRG-LGWKVLVCDPPRQEAEG-D-GDFVSLERILEECDVISLHTPL 177 (381)
T ss_pred CcCEEEEECCCHHHHHHHHHHHH-CCCEEEEECCccccccc-C-ccccCHHHHHhhCCEEEEeCcC
Confidence 57899999999999999888765 554 788875432210 0 0011134555799999976543
No 214
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=83.85 E-value=1.6 Score=41.14 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=40.9
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhccCCCcccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~ 214 (224)
..++++|||.|.+|+.-.+.+.. |.. ..|+|++........ ...-..+.+.+||+|+....
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~-fGm~V~~~d~~~~~~~~~~~-~~~~l~ell~~sDiVslh~P 212 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAES-LGMRVYFYDIEDKLPLGNAR-QVGSLEELLAQSDVVSLHVP 212 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCEEEEECCCcccccCCce-ecCCHHHHHhhCCEEEEcCC
Confidence 56799999999999999988765 543 778876432111111 11124666789999987654
No 215
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=83.59 E-value=2.1 Score=42.47 Aligned_cols=67 Identities=10% Similarity=0.088 Sum_probs=51.3
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC------CC-----cccccccCcEEEEeccccccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK------GM-----ATEDVITAKLIYDKYQAQHSN 219 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~------g~-----~~~~v~~advvv~~~~~~~~~ 219 (224)
..++.|+|+|..|+.-.+.+.+.. ++.+.+.++++.+.+.+... +. ..+-+.+||.||.++.....|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n 478 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTS 478 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHH
Confidence 578999999999999999887743 45899999999888865211 11 356778999999998765443
No 216
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=83.58 E-value=1.5 Score=44.27 Aligned_cols=62 Identities=8% Similarity=-0.004 Sum_probs=42.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhh--------h-ccCCC-----------------cccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTG--------S-TKKGM-----------------ATEDVI 204 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a--------~-~~~g~-----------------~~~~v~ 204 (224)
+-++++|||+|.+|.--...++.. +++.+|+++++..+.-. . ...|. ..+++.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 391 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFE 391 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhc
Confidence 347899999999998887776554 23499999988753211 1 00111 346788
Q ss_pred cCcEEEEec
Q psy13395 205 TAKLIYDKY 213 (224)
Q Consensus 205 ~advvv~~~ 213 (224)
++|+||.+-
T Consensus 392 ~aDlViEav 400 (715)
T PRK11730 392 RVDVVVEAV 400 (715)
T ss_pred CCCEEEecc
Confidence 999999874
No 217
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=83.45 E-value=2.3 Score=40.76 Aligned_cols=64 Identities=11% Similarity=-0.023 Sum_probs=47.7
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHHh--C----Cc----EEEeCCcchHHhhhhc----c----CCC-----cccccccCc
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHAS--L----KL----KKYNRGLTEGTVTGST----K----KGM-----ATEDVITAK 207 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~v--~----~i----~v~~R~~~~a~~~a~~----~----~g~-----~~~~v~~ad 207 (224)
++.+|+|||+ |..|..-+..+..- + ++ .+.++++++++..+-. . ..+ ..+++.+||
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaD 178 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAE 178 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCC
Confidence 6899999999 99999888876643 1 33 7779999887665531 1 011 578999999
Q ss_pred EEEEeccc
Q psy13395 208 LIYDKYQA 215 (224)
Q Consensus 208 vvv~~~~~ 215 (224)
|||-+-+.
T Consensus 179 iVVitAG~ 186 (444)
T PLN00112 179 WALLIGAK 186 (444)
T ss_pred EEEECCCC
Confidence 99988765
No 218
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.43 E-value=2.3 Score=38.36 Aligned_cols=55 Identities=7% Similarity=-0.026 Sum_probs=39.8
Q ss_pred CCcEEEEEecCH-hHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGA-QAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~-QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||.|. .|+--...+....- +.+.++... -..+.+.+|||||++++..|
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~-----------~l~~~~~~ADIVIsAvg~p~ 213 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK-----------DMASYLKDADVIVSAVGKPG 213 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch-----------hHHHHHhhCCEEEECCCCCc
Confidence 689999999988 88888887765432 344444221 13456889999999998865
No 219
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=83.23 E-value=2.1 Score=38.74 Aligned_cols=60 Identities=18% Similarity=0.094 Sum_probs=40.5
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccCCCcccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~ 214 (224)
..++|+|||.|.+|+.-.+.+.. |. +..|+|+....+. .-...-..+-+.+||+|+...-
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~-fgm~V~~~d~~~~~~~~--~~~~~~l~ell~~sDvv~lh~P 205 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQA-FGAKVVYYSTSGKNKNE--EYERVSLEELLKTSDIISIHAP 205 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhh-cCCEEEEECCCcccccc--CceeecHHHHhhcCCEEEEeCC
Confidence 67899999999999999988754 55 3778876432111 0001114666789999987654
No 220
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=83.21 E-value=1.7 Score=43.70 Aligned_cols=37 Identities=8% Similarity=-0.084 Sum_probs=29.8
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchH
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEG 188 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a 188 (224)
+.++++|||+|.+|..-...++... ++.+|+++++..
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l 346 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGI 346 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHH
Confidence 4688999999999999888877444 459999988754
No 221
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=83.19 E-value=2 Score=41.74 Aligned_cols=62 Identities=19% Similarity=0.122 Sum_probs=42.0
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcch--HHhhhhccCCCcccccccCcEEEEeccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTE--GTVTGSTKKGMATEDVITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~--a~~~a~~~~g~~~~~v~~advvv~~~~~ 215 (224)
..++++|||.|.+|+.-.+.+.. +. +..|+|+... ++.+.-+.. -..+.+.++|+|+.....
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~-fG~~V~~~d~~~~~~~~~~~g~~~~-~l~ell~~aDiV~l~lP~ 204 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKA-FGMKVIAYDPYISPERAAQLGVELV-SLDELLARADFITLHTPL 204 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-CCCEEEEECCCCChhHHHhcCCEEE-cHHHHHhhCCEEEEccCC
Confidence 47799999999999999888765 44 4888886432 222111111 145667799999987654
No 222
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.14 E-value=2.3 Score=38.77 Aligned_cols=64 Identities=9% Similarity=-0.035 Sum_probs=42.6
Q ss_pred CcEEEEEec-CHhHHHHHHHHHH--hCC------cEEEeCCcc--hHHhhhhc----c----C-----CCcccccccCcE
Q psy13395 153 DLVLAIMGS-GAQAYIHAKAFHA--SLK------LKKYNRGLT--EGTVTGST----K----K-----GMATEDVITAKL 208 (224)
Q Consensus 153 ~~~l~iiGa-G~QA~~hl~a~~~--v~~------i~v~~R~~~--~a~~~a~~----~----~-----g~~~~~v~~adv 208 (224)
+.+|+|||+ |..|..-+..+.. ++. +.+++...+ +++..+-. . . +-..+++.+|||
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 678999999 9999986665542 222 388888433 34443321 1 0 115789999999
Q ss_pred EEEecccc
Q psy13395 209 IYDKYQAQ 216 (224)
Q Consensus 209 vv~~~~~~ 216 (224)
||.+-+..
T Consensus 82 vvitaG~~ 89 (322)
T cd01338 82 ALLVGAKP 89 (322)
T ss_pred EEEeCCCC
Confidence 99887763
No 223
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=82.66 E-value=1.9 Score=39.87 Aligned_cols=64 Identities=9% Similarity=0.051 Sum_probs=44.8
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCC-------------------cchHHhhhhcc----CCC--------
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRG-------------------LTEGTVTGSTK----KGM-------- 198 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~-------------------~~~a~~~a~~~----~g~-------- 198 (224)
...+|+|+|+|..|...++.+...-- +.+++++ ..|++.++++. ..+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~ 213 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER 213 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 46789999999999999998876542 4777776 45677666531 111
Q ss_pred -c----ccccccCcEEEEeccc
Q psy13395 199 -A----TEDVITAKLIYDKYQA 215 (224)
Q Consensus 199 -~----~~~v~~advvv~~~~~ 215 (224)
. .+-+.++|+||.+|..
T Consensus 214 ~~~~~~~~~~~~~D~Vv~~~d~ 235 (376)
T PRK08762 214 VTSDNVEALLQDVDVVVDGADN 235 (376)
T ss_pred CChHHHHHHHhCCCEEEECCCC
Confidence 1 1235689999998764
No 224
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=82.57 E-value=2.3 Score=33.36 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=43.1
Q ss_pred EEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc------CC---------Cc--ccccccCcEEEEeccccc
Q psy13395 156 LAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK------KG---------MA--TEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 156 l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~------~g---------~~--~~~v~~advvv~~~~~~~ 217 (224)
++|+|+|.+|..-...|...- ++.+|.|.. +.+.+.+.. .+ .. .+.....|+||-++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc
Confidence 689999999999888887732 249999988 777765421 11 01 236778999999998764
No 225
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=82.30 E-value=2.2 Score=39.12 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=26.8
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGL 185 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~ 185 (224)
...+|+|||+|..|..-++.+...- .+.+++++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4568999999999999999887764 247777763
No 226
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=82.18 E-value=2.2 Score=42.11 Aligned_cols=67 Identities=12% Similarity=0.153 Sum_probs=50.8
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC----C-------CcccccccCcEEEEeccccccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK----G-------MATEDVITAKLIYDKYQAQHSN 219 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~----g-------~~~~~v~~advvv~~~~~~~~~ 219 (224)
..++.|+|.|..|+.-.+.+.... ++.+.++++++.+.+.+... | +..+.+.+||.||.++.....|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n 478 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDT 478 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHH
Confidence 368999999999999888887643 45999999999887754211 1 1456688999999998876544
No 227
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=81.86 E-value=3.4 Score=37.42 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=46.2
Q ss_pred EEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhc------cCC---------CcccccccCcEEEEecccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGST------KKG---------MATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~------~~g---------~~~~~v~~advvv~~~~~~ 216 (224)
+++|+|+|.+|..-.-.+...-. +.+|.|++. +++|.+. ..+ ...+....+|+||.++.+-
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~ 78 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY 78 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc
Confidence 68999999999888888777764 389998886 7777762 112 1466677899999988663
No 228
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=81.73 E-value=2.2 Score=40.02 Aligned_cols=99 Identities=11% Similarity=-0.001 Sum_probs=66.6
Q ss_pred EEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCcch
Q psy13395 109 TVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGLTE 187 (224)
Q Consensus 109 ~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~~ 187 (224)
+|.++|+.| ..+.|..+=|+--|--.=.=++..|- .-++++|.|.|-.++-....+...--. .||--+|
T Consensus 173 ai~VNDs~t---K~~FDNrYGtgqS~~DgI~RaTn~li-----aGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDP-- 242 (420)
T COG0499 173 AINVNDSVT---KSLFDNRYGTGQSLLDGILRATNVLL-----AGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDP-- 242 (420)
T ss_pred eEeecchhh---hcccccccccchhHHHHHHhhhceee-----cCceEEEecccccchHHHHHhhcCCCeEEEEecCc--
Confidence 445566554 34566666655443333333455543 357999999999999988877665543 7776665
Q ss_pred HHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395 188 GTVTGSTKKGM----ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 188 a~~~a~~~~g~----~~~~v~~advvv~~~~~~~ 217 (224)
.+++...++|+ ..+++..+||+||+|+..+
T Consensus 243 I~AleA~MdGf~V~~m~~Aa~~gDifiT~TGnkd 276 (420)
T COG0499 243 IRALEAAMDGFRVMTMEEAAKTGDIFVTATGNKD 276 (420)
T ss_pred hHHHHHhhcCcEEEEhHHhhhcCCEEEEccCCcC
Confidence 44555566676 6788999999999999754
No 229
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=81.42 E-value=3.3 Score=36.59 Aligned_cols=61 Identities=26% Similarity=0.277 Sum_probs=37.6
Q ss_pred EEEEEe-cCHhHHHHHHHHHHhCCc---EEEeCCc-ch-HHhhhh---c-cCCC----ccccc-ccCcEEEEeccc
Q psy13395 155 VLAIMG-SGAQAYIHAKAFHASLKL---KKYNRGL-TE-GTVTGS---T-KKGM----ATEDV-ITAKLIYDKYQA 215 (224)
Q Consensus 155 ~l~iiG-aG~QA~~hl~a~~~v~~i---~v~~R~~-~~-a~~~a~---~-~~g~----~~~~v-~~advvv~~~~~ 215 (224)
+++|+| +|.+|+.+++.+...-.+ -+++|.. +. .+.+++ . ..|+ ..+++ ..+||||..|..
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p 78 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTP 78 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCCh
Confidence 799999 699999999998875443 6677542 22 112222 1 1232 12233 358999998754
No 230
>PRK15076 alpha-galactosidase; Provisional
Probab=81.41 E-value=2.7 Score=39.90 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=41.8
Q ss_pred cEEEEEecCHhHHH--HHHHHHHh--C---CcEEEeCCcchHH---hhhhc---cCCC---------cccccccCcEEEE
Q psy13395 154 LVLAIMGSGAQAYI--HAKAFHAS--L---KLKKYNRGLTEGT---VTGST---KKGM---------ATEDVITAKLIYD 211 (224)
Q Consensus 154 ~~l~iiGaG~QA~~--hl~a~~~v--~---~i~v~~R~~~~a~---~~a~~---~~g~---------~~~~v~~advvv~ 211 (224)
.+++|||+|.++.. +++.+... + .+.++++++++++ +++++ ..+. ..+++.+||+||.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 47999999998644 33355422 2 2399999998865 33221 1121 2688999999999
Q ss_pred ecccc
Q psy13395 212 KYQAQ 216 (224)
Q Consensus 212 ~~~~~ 216 (224)
+-+..
T Consensus 82 ti~vg 86 (431)
T PRK15076 82 AIQVG 86 (431)
T ss_pred eeeeC
Confidence 98874
No 231
>PTZ00325 malate dehydrogenase; Provisional
Probab=81.40 E-value=3.4 Score=37.74 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=43.0
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHHhCC----cEEEeCCcchHHhh--hhcc-----CCC-----cccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHASLK----LKKYNRGLTEGTVT--GSTK-----KGM-----ATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~v~~----i~v~~R~~~~a~~~--a~~~-----~g~-----~~~~v~~advvv~~~~ 214 (224)
.-++++|+|+ |..|..-...+. ..+ +.++++....++++ .+.. .+. ..+++.++|+||.+-+
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~-~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLK-QNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHh-cCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 5679999999 999998887765 223 38888844333222 1110 111 1689999999999887
Q ss_pred cc
Q psy13395 215 AQ 216 (224)
Q Consensus 215 ~~ 216 (224)
..
T Consensus 86 ~~ 87 (321)
T PTZ00325 86 VP 87 (321)
T ss_pred CC
Confidence 64
No 232
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.31 E-value=4.2 Score=38.93 Aligned_cols=63 Identities=10% Similarity=0.054 Sum_probs=44.2
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCC-------cccccccCcEEEEeccccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGM-------ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~-------~~~~v~~advvv~~~~~~~ 217 (224)
.++++|+|.|..|...++.+...-. +.+|++.++..+.+.+ .|+ ..+.+.++|+||.+.+--.
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~--~g~~~~~~~~~~~~l~~~D~VV~SpGi~~ 82 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAE--RGVATVSTSDAVQQIADYALVVTSPGFRP 82 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHh--CCCEEEcCcchHhHhhcCCEEEECCCCCC
Confidence 4689999999999999987665432 3888877655444332 232 3355678999999987643
No 233
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=81.05 E-value=4 Score=36.83 Aligned_cols=62 Identities=8% Similarity=-0.029 Sum_probs=43.1
Q ss_pred cEEEEEecCHhHHHHHHHHHHh--CCcEEEeCCcchHHhhh----hc-----cCC-----CcccccccCcEEEEeccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHAS--LKLKKYNRGLTEGTVTG----ST-----KKG-----MATEDVITAKLIYDKYQA 215 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v--~~i~v~~R~~~~a~~~a----~~-----~~g-----~~~~~v~~advvv~~~~~ 215 (224)
.+++|||+|.+|......+... .++.++++..+.++..+ +. ..+ -..+++.+||+||-+-+.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aDiVIitag~ 79 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAGL 79 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCCEEEEcCCC
Confidence 3689999999999998887763 24688888766544222 10 001 145678999999998775
No 234
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=80.85 E-value=2.9 Score=39.19 Aligned_cols=51 Identities=10% Similarity=0.080 Sum_probs=38.5
Q ss_pred hhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhh
Q psy13395 143 KHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGS 193 (224)
Q Consensus 143 ~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~ 193 (224)
++.+|....++-++++||+|.+++-.+.-+.+.-.+ -|-+|+.+.+++-.+
T Consensus 7 ~L~aRaa~G~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~ 60 (438)
T COG4091 7 DLAARAAEGKPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYD 60 (438)
T ss_pred HHHHHhccCCceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHH
Confidence 344444333799999999999999988887766555 777899988866655
No 235
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=80.82 E-value=3.1 Score=35.33 Aligned_cols=70 Identities=11% Similarity=-0.056 Sum_probs=42.7
Q ss_pred hhhccCCCCCCcEEEEEecCHhHHHHHHHHHH-hCC--c-EEEeCCcchHHhhhhcc--CCC--cccccc--cCcEEEEe
Q psy13395 143 KHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHA-SLK--L-KKYNRGLTEGTVTGSTK--KGM--ATEDVI--TAKLIYDK 212 (224)
Q Consensus 143 ~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~-v~~--i-~v~~R~~~~a~~~a~~~--~g~--~~~~v~--~advvv~~ 212 (224)
++|... ...+++|||+|..|+.+++.+.. ... + -++++++++........ ..+ ..+-+. +.|+|+-+
T Consensus 77 ~~l~~~---~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa 153 (213)
T PRK05472 77 KILGLD---RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILT 153 (213)
T ss_pred HHhCCC---CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEe
Confidence 345445 67799999999999999886432 122 3 78888877764433211 111 122222 47888877
Q ss_pred ccc
Q psy13395 213 YQA 215 (224)
Q Consensus 213 ~~~ 215 (224)
+..
T Consensus 154 ~P~ 156 (213)
T PRK05472 154 VPA 156 (213)
T ss_pred CCc
Confidence 654
No 236
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=80.81 E-value=4.6 Score=36.15 Aligned_cols=64 Identities=14% Similarity=0.191 Sum_probs=43.8
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc------cCC------C----cccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST------KKG------M----ATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~------~~g------~----~~~~v~~advvv~~~~ 214 (224)
...+++|||+|.+|..-...+... .++.+|.|+... ++... ..+ . ..+++...|+||-++-
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK 81 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYE--AVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLK 81 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHH--HHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEec
Confidence 456899999999999988888775 345888887633 33221 011 0 2345678899999987
Q ss_pred ccc
Q psy13395 215 AQH 217 (224)
Q Consensus 215 ~~~ 217 (224)
..+
T Consensus 82 ~~~ 84 (313)
T PRK06249 82 TTA 84 (313)
T ss_pred CCC
Confidence 654
No 237
>PRK05086 malate dehydrogenase; Provisional
Probab=80.61 E-value=4.8 Score=36.45 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=43.6
Q ss_pred EEEEEec-CHhHHHHHHHHHHhCCc----EEEeCCcchHH----hhhhcc--C---C---Cc-ccccccCcEEEEecccc
Q psy13395 155 VLAIMGS-GAQAYIHAKAFHASLKL----KKYNRGLTEGT----VTGSTK--K---G---MA-TEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiGa-G~QA~~hl~a~~~v~~i----~v~~R~~~~a~----~~a~~~--~---g---~~-~~~v~~advvv~~~~~~ 216 (224)
+++|||+ |.+|..-+..+....++ .+++|++. ++ .+.+.. . | -. .+++.++|+||.+.+..
T Consensus 2 KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 2 KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 6899999 99999988877554442 88888753 32 222211 1 1 12 57889999999999987
Q ss_pred cc
Q psy13395 217 HS 218 (224)
Q Consensus 217 ~~ 218 (224)
|.
T Consensus 81 ~~ 82 (312)
T PRK05086 81 RK 82 (312)
T ss_pred CC
Confidence 65
No 238
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=80.58 E-value=1.8 Score=43.95 Aligned_cols=62 Identities=15% Similarity=0.070 Sum_probs=43.2
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc---------cCC-----------------Ccccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST---------KKG-----------------MATEDVI 204 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~---------~~g-----------------~~~~~v~ 204 (224)
+.++|+|||+|.+|.--...++.. +++.+|+++++..++-.++ ..| ...+++.
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 413 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFK 413 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence 457899999999998877776544 3459999999875442210 011 1346788
Q ss_pred cCcEEEEec
Q psy13395 205 TAKLIYDKY 213 (224)
Q Consensus 205 ~advvv~~~ 213 (224)
++|+||.+-
T Consensus 414 ~aDlViEAv 422 (737)
T TIGR02441 414 NADMVIEAV 422 (737)
T ss_pred cCCeehhhc
Confidence 999999873
No 239
>PRK06487 glycerate dehydrogenase; Provisional
Probab=80.48 E-value=3.1 Score=37.73 Aligned_cols=58 Identities=10% Similarity=-0.036 Sum_probs=39.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhccCCCcccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~ 214 (224)
..++++|||.|.+|+.-.+.+.. |.. ..|+|.... +. .+ .--..+.+.+||+|+...-
T Consensus 147 ~gktvgIiG~G~IG~~vA~~l~~-fgm~V~~~~~~~~~-~~-~~--~~~l~ell~~sDiv~l~lP 206 (317)
T PRK06487 147 EGKTLGLLGHGELGGAVARLAEA-FGMRVLIGQLPGRP-AR-PD--RLPLDELLPQVDALTLHCP 206 (317)
T ss_pred CCCEEEEECCCHHHHHHHHHHhh-CCCEEEEECCCCCc-cc-cc--ccCHHHHHHhCCEEEECCC
Confidence 56799999999999999988764 553 677876321 11 11 1124566789999997654
No 240
>PRK06932 glycerate dehydrogenase; Provisional
Probab=79.83 E-value=3 Score=37.85 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=39.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhccCCCcccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~ 214 (224)
.-++++|||.|.+|+.-.+.+.. |.. ..|+|.... ..... .--..+.+.+||+|+....
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~-fg~~V~~~~~~~~~--~~~~~-~~~l~ell~~sDiv~l~~P 206 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQA-LGMKVLYAEHKGAS--VCREG-YTPFEEVLKQADIVTLHCP 206 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhc-CCCEEEEECCCccc--ccccc-cCCHHHHHHhCCEEEEcCC
Confidence 46899999999999999888654 553 667765421 11001 1125677889999997654
No 241
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=79.20 E-value=3.7 Score=38.48 Aligned_cols=59 Identities=15% Similarity=0.063 Sum_probs=39.0
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhccCCCcccccccCcEEEEec
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKY 213 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~ 213 (224)
..++|+|||.|.+|+.-.+.+.. +.. .+|+|....... ....--..+-+.+||||+..+
T Consensus 115 ~gktvGIIG~G~IG~~vA~~l~a-~G~~V~~~dp~~~~~~~--~~~~~~L~ell~~sDiI~lh~ 175 (378)
T PRK15438 115 HDRTVGIVGVGNVGRRLQARLEA-LGIKTLLCDPPRADRGD--EGDFRSLDELVQEADILTFHT 175 (378)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-CCCEEEEECCccccccc--ccccCCHHHHHhhCCEEEEeC
Confidence 68899999999999999888765 554 778865332110 000111445556999999544
No 242
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=78.87 E-value=4.2 Score=38.24 Aligned_cols=64 Identities=13% Similarity=0.005 Sum_probs=46.3
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHH--hCC----c--EEE--eCCcchHHhhhhc----c----CCC-----cccccccCc
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHA--SLK----L--KKY--NRGLTEGTVTGST----K----KGM-----ATEDVITAK 207 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~--v~~----i--~v~--~R~~~~a~~~a~~----~----~g~-----~~~~v~~ad 207 (224)
++.+|+|||+ |..|..-+.++.. ++. + .++ +++.++++..+-. . ..+ ..+++.+||
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaD 122 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDAD 122 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCC
Confidence 6899999999 9999888877653 233 3 444 8888887665531 1 011 568999999
Q ss_pred EEEEeccc
Q psy13395 208 LIYDKYQA 215 (224)
Q Consensus 208 vvv~~~~~ 215 (224)
|||-+-+.
T Consensus 123 IVVitAG~ 130 (387)
T TIGR01757 123 WALLIGAK 130 (387)
T ss_pred EEEECCCC
Confidence 99987665
No 243
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=78.84 E-value=2.4 Score=38.19 Aligned_cols=57 Identities=16% Similarity=0.045 Sum_probs=41.5
Q ss_pred EEecCHhHHHHHHHHHHhCCc----EEEeCCcchHHhhhhc----c--C-------CCcccccccCcEEEEeccc
Q psy13395 158 IMGSGAQAYIHAKAFHASLKL----KKYNRGLTEGTVTGST----K--K-------GMATEDVITAKLIYDKYQA 215 (224)
Q Consensus 158 iiGaG~QA~~hl~a~~~v~~i----~v~~R~~~~a~~~a~~----~--~-------g~~~~~v~~advvv~~~~~ 215 (224)
|||+|..|..-+..+.. .++ .+++++.++++..+.. . . +-..+++.+|||||-+-+.
T Consensus 1 iIGaG~VG~~~a~~l~~-~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~ 74 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-QGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGA 74 (299)
T ss_pred CCCcCHHHHHHHHHHHh-cCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCC
Confidence 68999999888877653 343 8999988876555431 0 1 1157899999999998775
No 244
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.78 E-value=4 Score=37.21 Aligned_cols=63 Identities=10% Similarity=-0.052 Sum_probs=42.3
Q ss_pred CcEEEEEec-CHhHHHHHHHHHH--hC------CcEEEeCCc--chHHhhhhcc-------------CCCcccccccCcE
Q psy13395 153 DLVLAIMGS-GAQAYIHAKAFHA--SL------KLKKYNRGL--TEGTVTGSTK-------------KGMATEDVITAKL 208 (224)
Q Consensus 153 ~~~l~iiGa-G~QA~~hl~a~~~--v~------~i~v~~R~~--~~a~~~a~~~-------------~g~~~~~v~~adv 208 (224)
+.+++|+|+ |..|..-+..+.. +. .+.++++.+ ++++..+-.. .+-..+++.++|+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 567999999 9999999998776 22 348888854 3233322110 1113688999999
Q ss_pred EEEeccc
Q psy13395 209 IYDKYQA 215 (224)
Q Consensus 209 vv~~~~~ 215 (224)
||-+-+.
T Consensus 82 VI~tAG~ 88 (325)
T cd01336 82 AILVGAM 88 (325)
T ss_pred EEEeCCc
Confidence 9977654
No 245
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.65 E-value=3.6 Score=37.52 Aligned_cols=62 Identities=11% Similarity=-0.057 Sum_probs=43.5
Q ss_pred EEEEEec-CHhHHHHHHHHHHh--CC------cEEEeCCc--chHHhhhh----cc----C-----CCcccccccCcEEE
Q psy13395 155 VLAIMGS-GAQAYIHAKAFHAS--LK------LKKYNRGL--TEGTVTGS----TK----K-----GMATEDVITAKLIY 210 (224)
Q Consensus 155 ~l~iiGa-G~QA~~hl~a~~~v--~~------i~v~~R~~--~~a~~~a~----~~----~-----g~~~~~v~~advvv 210 (224)
+++|+|+ |..|..-...+..- .. +.++++++ ++++..+. .. . +-..+++.+|||||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 6899999 99999988876641 11 48889887 66554442 10 0 11578999999999
Q ss_pred Eecccc
Q psy13395 211 DKYQAQ 216 (224)
Q Consensus 211 ~~~~~~ 216 (224)
-+-+..
T Consensus 82 itAG~~ 87 (323)
T cd00704 82 LVGAFP 87 (323)
T ss_pred EeCCCC
Confidence 876653
No 246
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=78.33 E-value=4.6 Score=37.02 Aligned_cols=21 Identities=29% Similarity=0.188 Sum_probs=18.9
Q ss_pred EEEEEecCHhHHHHHHHHHHh
Q psy13395 155 VLAIMGSGAQAYIHAKAFHAS 175 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v 175 (224)
+++|.|+|.+||.++|++...
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~ 21 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYES 21 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhc
Confidence 489999999999999998864
No 247
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.24 E-value=6.5 Score=37.48 Aligned_cols=63 Identities=11% Similarity=-0.016 Sum_probs=44.8
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCC-------cccccccCcEEEEeccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGM-------ATEDVITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~-------~~~~v~~advvv~~~~~ 215 (224)
+.++++|+|+|..|+.-++.+...-. +.+++++.....++.+. .|+ ..+.+.++|+||.+-+-
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~-~gi~~~~~~~~~~~~~~~d~vV~Spgi 84 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEV-TGVADISTAEASDQLDSFSLVVTSPGW 84 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHh-cCcEEEeCCCchhHhcCCCEEEeCCCC
Confidence 56789999999999988888876544 38899876655444332 243 23446789999987654
No 248
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=77.74 E-value=6.5 Score=35.23 Aligned_cols=64 Identities=11% Similarity=0.103 Sum_probs=44.1
Q ss_pred cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc------CCC---------cccccccCcEEEEeccccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK------KGM---------ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~------~g~---------~~~~v~~advvv~~~~~~~ 217 (224)
.+++|+|+|.+|-.-.-.+...- ++.++.|..++.+++.++. .|- ..+.....|+||.++-+.+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~~ 82 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAYD 82 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHHh
Confidence 47999999999988777777663 3588899877776664321 110 1223446799999987765
No 249
>PLN00106 malate dehydrogenase
Probab=77.65 E-value=5.1 Score=36.64 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=44.6
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHH--hCC-cEEEeCCcchHH--hhhhc-----cCCC--c---ccccccCcEEEEeccc
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHA--SLK-LKKYNRGLTEGT--VTGST-----KKGM--A---TEDVITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~--v~~-i~v~~R~~~~a~--~~a~~-----~~g~--~---~~~v~~advvv~~~~~ 215 (224)
.+.+|+|||+ |..|..-..++.. +.. +.++++++..++ ++.+. ..++ . .+++.++|+||.+-+.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 4679999999 9999988887763 222 489988773322 22111 1121 2 6889999999998776
Q ss_pred cc
Q psy13395 216 QH 217 (224)
Q Consensus 216 ~~ 217 (224)
..
T Consensus 97 ~~ 98 (323)
T PLN00106 97 PR 98 (323)
T ss_pred CC
Confidence 43
No 250
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=77.58 E-value=4.5 Score=37.05 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=38.6
Q ss_pred cEEEEEec-CHhHHHHHHHHHHhCC--c-EEEeCCcchHHhhhhc---cC--------CCcccccccCcEEEEecccc
Q psy13395 154 LVLAIMGS-GAQAYIHAKAFHASLK--L-KKYNRGLTEGTVTGST---KK--------GMATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 154 ~~l~iiGa-G~QA~~hl~a~~~v~~--i-~v~~R~~~~a~~~a~~---~~--------g~~~~~v~~advvv~~~~~~ 216 (224)
.+++|||+ |..|+.|++.+...-. + .+.+|. +..+.+.+. .. .+...+..+.|+|+.+|...
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~ 79 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHG 79 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcH
Confidence 47999996 9999999999886422 3 555543 333333321 11 11222445789999988654
No 251
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=77.57 E-value=5.2 Score=37.90 Aligned_cols=62 Identities=10% Similarity=0.158 Sum_probs=49.9
Q ss_pred EEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc-----CCC------------------cccccccCcEEE
Q psy13395 155 VLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK-----KGM------------------ATEDVITAKLIY 210 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~-----~g~------------------~~~~v~~advvv 210 (224)
++.|||+|-.|..+.-.|..+ ..+.+.+.++++.+.+.+.. .|+ ..+++.++||++
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~f 81 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVVF 81 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEEE
Confidence 689999999999999999998 44689999999988887631 122 356888999999
Q ss_pred Eecccc
Q psy13395 211 DKYQAQ 216 (224)
Q Consensus 211 ~~~~~~ 216 (224)
-+++..
T Consensus 82 IavgTP 87 (414)
T COG1004 82 IAVGTP 87 (414)
T ss_pred EEcCCC
Confidence 988754
No 252
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=77.28 E-value=4.9 Score=34.34 Aligned_cols=50 Identities=26% Similarity=0.123 Sum_probs=32.5
Q ss_pred hhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCC
Q psy13395 132 WRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRG 184 (224)
Q Consensus 132 ~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~ 184 (224)
|+-...+.++.....+= ...+++|+|+|..|-..++.+...-- +.+++.+
T Consensus 10 ~~~~~~~~~g~~~q~~L---~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 10 FEAMLASRHTPKLLEKL---KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHHHHhhcCHHHHHHH---hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 33344444444433333 56789999999999999998876531 3666655
No 253
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=76.61 E-value=3.6 Score=37.58 Aligned_cols=62 Identities=8% Similarity=-0.082 Sum_probs=40.9
Q ss_pred EEEEEec-CHhHHHHHHHHHH--hC------CcEEEeCCcch--HHhhhh----cc----C-----CCcccccccCcEEE
Q psy13395 155 VLAIMGS-GAQAYIHAKAFHA--SL------KLKKYNRGLTE--GTVTGS----TK----K-----GMATEDVITAKLIY 210 (224)
Q Consensus 155 ~l~iiGa-G~QA~~hl~a~~~--v~------~i~v~~R~~~~--a~~~a~----~~----~-----g~~~~~v~~advvv 210 (224)
+|+|||+ |..|..-+..+.. ++ .+.++++.++. ++..+. .. . +-..+++.++||||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999988877653 22 24788885443 433332 11 0 01368999999999
Q ss_pred Eecccc
Q psy13395 211 DKYQAQ 216 (224)
Q Consensus 211 ~~~~~~ 216 (224)
-+-+..
T Consensus 81 itAG~~ 86 (324)
T TIGR01758 81 LVGAFP 86 (324)
T ss_pred EcCCCC
Confidence 876654
No 254
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=76.47 E-value=3.5 Score=31.27 Aligned_cols=57 Identities=9% Similarity=0.084 Sum_probs=32.2
Q ss_pred ecCHhHHHHHHHHHHhC---Cc---EEEeCC--cch--HHhhhhccCCCcccc-cc--cCcEEEEecccc
Q psy13395 160 GSGAQAYIHAKAFHASL---KL---KKYNRG--LTE--GTVTGSTKKGMATED-VI--TAKLIYDKYQAQ 216 (224)
Q Consensus 160 GaG~QA~~hl~a~~~v~---~i---~v~~R~--~~~--a~~~a~~~~g~~~~~-v~--~advvv~~~~~~ 216 (224)
|+|.+|+.-++.+.... ++ .|++|+ ... .+.+.........++ +. ..||||..|+.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~ 70 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSE 70 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCch
Confidence 89999999999998875 43 999999 111 111211111112222 33 699999997654
No 255
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=76.35 E-value=5.6 Score=36.85 Aligned_cols=39 Identities=8% Similarity=-0.101 Sum_probs=29.6
Q ss_pred EEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhh
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGS 193 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~ 193 (224)
++++||+|..++.|+-.+..--+ |.+.++.++..+++.+
T Consensus 2 ki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~ 42 (381)
T PRK02318 2 KAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNK 42 (381)
T ss_pred ceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhc
Confidence 58899999999999777666554 4666777777777765
No 256
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.80 E-value=9.2 Score=35.69 Aligned_cols=67 Identities=12% Similarity=0.026 Sum_probs=44.0
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCc-chHHhhhh--ccCCC-------cccccccCcEEEEecccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGL-TEGTVTGS--TKKGM-------ATEDVITAKLIYDKYQAQHS 218 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~-~~a~~~a~--~~~g~-------~~~~v~~advvv~~~~~~~~ 218 (224)
+.++++|+|.|..|..-.+.+...-. +.+++++. +..+...+ ...|+ ..+.+.+.|+||.+++....
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 45789999999999988888776543 48888875 22322222 11232 23344679999999886543
No 257
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=75.67 E-value=8.1 Score=32.93 Aligned_cols=64 Identities=11% Similarity=0.060 Sum_probs=43.3
Q ss_pred CCcEEEEEe-cCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC-------CC------ccccc-ccCcEEEEeccc
Q psy13395 152 KDLVLAIMG-SGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK-------GM------ATEDV-ITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiG-aG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~-------g~------~~~~v-~~advvv~~~~~ 215 (224)
+.++++|+| +|.+|+..++.++.-- ++.+..|++++++.+..... .+ ..+.+ ...|+||..++.
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~ 95 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGF 95 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 678999999 5999999999987742 24667888887655432110 11 12334 478999987653
No 258
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=75.46 E-value=6.5 Score=36.39 Aligned_cols=61 Identities=10% Similarity=-0.030 Sum_probs=37.7
Q ss_pred EEEEEecCHhHHH--------------------HHHHHHHh-CCcEEEeCCcchH-----Hhhhhcc---CCCccccccc
Q psy13395 155 VLAIMGSGAQAYI--------------------HAKAFHAS-LKLKKYNRGLTEG-----TVTGSTK---KGMATEDVIT 205 (224)
Q Consensus 155 ~l~iiGaG~QA~~--------------------hl~a~~~v-~~i~v~~R~~~~a-----~~~a~~~---~g~~~~~v~~ 205 (224)
.+.|.|+|.|=.+ ..+.+... +++.+|||++++. +.|.+.. .....+++.+
T Consensus 2 ~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ 81 (341)
T TIGR01724 2 KVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKH 81 (341)
T ss_pred eeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhC
Confidence 4678888888654 12222222 3349999987654 3455431 1225677889
Q ss_pred CcEEEEeccc
Q psy13395 206 AKLIYDKYQA 215 (224)
Q Consensus 206 advvv~~~~~ 215 (224)
+||||+....
T Consensus 82 ADVVIL~LPd 91 (341)
T TIGR01724 82 GEIHVLFTPF 91 (341)
T ss_pred CCEEEEecCC
Confidence 9999998764
No 259
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=75.25 E-value=2.3 Score=37.68 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=38.6
Q ss_pred CCcEEEEEecCHhHHH-HHHHHHHhCCc-EEEeCCcchHHhhhhcc
Q psy13395 152 KDLVLAIMGSGAQAYI-HAKAFHASLKL-KKYNRGLTEGTVTGSTK 195 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~-hl~a~~~v~~i-~v~~R~~~~a~~~a~~~ 195 (224)
.+-+++++|+|..++. -+++.+.+..+ .|-+|++++++.|++..
T Consensus 9 ~~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~ 54 (289)
T COG5495 9 ARVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETY 54 (289)
T ss_pred eeeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhcc
Confidence 5788999999999999 77887777777 99999999999999853
No 260
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.21 E-value=10 Score=35.88 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=42.0
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcc-hHHhhhh--ccCCC------cccccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLT-EGTVTGS--TKKGM------ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~-~a~~~a~--~~~g~------~~~~v~~advvv~~~~~~ 216 (224)
..++++|||.|..|..-++++.. +.. .++++..+ ..+.+.+ +..|+ ..+...++|+||.+++..
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~-~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLE-LGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWR 89 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcC
Confidence 56799999999999998777765 443 88875543 2222222 12243 222345799999998864
No 261
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=74.52 E-value=3.5 Score=34.80 Aligned_cols=61 Identities=10% Similarity=0.105 Sum_probs=37.8
Q ss_pred EEEEEecCHhHHH-HHHHHHHhCC------cEEEeCCcchHH---hhhhc---cCCC---------cccccccCcEEEEe
Q psy13395 155 VLAIMGSGAQAYI-HAKAFHASLK------LKKYNRGLTEGT---VTGST---KKGM---------ATEDVITAKLIYDK 212 (224)
Q Consensus 155 ~l~iiGaG~QA~~-hl~a~~~v~~------i~v~~R~~~~a~---~~a~~---~~g~---------~~~~v~~advvv~~ 212 (224)
+++|||+|-.=.. .+.......+ +.++++++++.+ +++++ ..|. ..+++.+||.||++
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 4789999965433 3444444433 289999999875 44442 2232 58899999999998
Q ss_pred ccc
Q psy13395 213 YQA 215 (224)
Q Consensus 213 ~~~ 215 (224)
-+.
T Consensus 81 irv 83 (183)
T PF02056_consen 81 IRV 83 (183)
T ss_dssp --T
T ss_pred eee
Confidence 664
No 262
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=74.15 E-value=7.1 Score=37.60 Aligned_cols=60 Identities=10% Similarity=0.163 Sum_probs=45.1
Q ss_pred EEEEEecCHhHHHHHHHHHHh---CCcEEEeCCcchHHhhhhcc-----C----------C--C-----cccccccCcEE
Q psy13395 155 VLAIMGSGAQAYIHAKAFHAS---LKLKKYNRGLTEGTVTGSTK-----K----------G--M-----ATEDVITAKLI 209 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v---~~i~v~~R~~~~a~~~a~~~-----~----------g--~-----~~~~v~~advv 209 (224)
+++|||+|..|....-.|... +++..|+.++++.+.+.+.. . + + ..+++.+||+|
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~advi 82 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADIV 82 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCEE
Confidence 689999999999999998886 33577899999988865411 0 1 1 24568899999
Q ss_pred EEecc
Q psy13395 210 YDKYQ 214 (224)
Q Consensus 210 v~~~~ 214 (224)
|-+-.
T Consensus 83 ~I~V~ 87 (473)
T PLN02353 83 FVSVN 87 (473)
T ss_pred EEEeC
Confidence 88654
No 263
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=73.39 E-value=5.8 Score=32.75 Aligned_cols=31 Identities=23% Similarity=0.156 Sum_probs=23.4
Q ss_pred EEEEEecCHhHHHHHHHHHHhC--CcEEEeCCc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL--KLKKYNRGL 185 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~ 185 (224)
+++|||+|..|-..++.+...- .+.+++.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4899999999999988877642 246666654
No 264
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=73.34 E-value=6 Score=36.32 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=25.8
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCC
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRG 184 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~ 184 (224)
...+|+|+|+|..|...++.+...- .+.+++++
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4678999999999999998887653 23777765
No 265
>KOG0069|consensus
Probab=73.25 E-value=7 Score=36.15 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=43.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhcc-CCC-cccccccCcEEEEec
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTK-KGM-ATEDVITAKLIYDKY 213 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~-~g~-~~~~v~~advvv~~~ 213 (224)
.-++|+|+|.|.+++.-++-+.. |. |..++|+...-+...+.. +-. -.+-..++|+||..-
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~-Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~ 225 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKP-FGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNC 225 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhh-ccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEec
Confidence 46899999999999999999888 65 366777776655554421 122 345566899998753
No 266
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=73.00 E-value=9.3 Score=34.48 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=42.0
Q ss_pred EEEEEec-CHhHHHHHHHHHHhCC---cEEEeCCc--chHHhhhh----c--cCC--------CcccccccCcEEEEecc
Q psy13395 155 VLAIMGS-GAQAYIHAKAFHASLK---LKKYNRGL--TEGTVTGS----T--KKG--------MATEDVITAKLIYDKYQ 214 (224)
Q Consensus 155 ~l~iiGa-G~QA~~hl~a~~~v~~---i~v~~R~~--~~a~~~a~----~--~~g--------~~~~~v~~advvv~~~~ 214 (224)
+++|||+ |..|...+..+...-. +.+++|++ ++++..+. . ..+ ...+++.+|||||.+-+
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDiViitag 81 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVIITAG 81 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCEEEEecC
Confidence 6899997 9999999998776532 37778854 44432221 0 011 13577999999999877
Q ss_pred cc
Q psy13395 215 AQ 216 (224)
Q Consensus 215 ~~ 216 (224)
..
T Consensus 82 ~p 83 (309)
T cd05294 82 VP 83 (309)
T ss_pred CC
Confidence 53
No 267
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=70.12 E-value=7.1 Score=35.52 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=40.3
Q ss_pred EEEEEec-CHhHHHHHHHHHHhCCc----EEEeCCcchHHh--hhhcc-----CC---C--cccccccCcEEEEecccc
Q psy13395 155 VLAIMGS-GAQAYIHAKAFHASLKL----KKYNRGLTEGTV--TGSTK-----KG---M--ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiGa-G~QA~~hl~a~~~v~~i----~v~~R~~~~a~~--~a~~~-----~g---~--~~~~v~~advvv~~~~~~ 216 (224)
+++|||+ |..|..-...+.. .++ .++++++..+++ |.+.. .+ - ..+++.+|||||.+-+..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~ 78 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-QPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVP 78 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-CCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCC
Confidence 4799999 9999988777644 343 888887633222 22211 11 1 168999999999887763
No 268
>PLN03075 nicotianamine synthase; Provisional
Probab=69.63 E-value=17 Score=33.07 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=42.3
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcch---HHhhhhccCCC-------------cccccccCcEEEEe
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTE---GTVTGSTKKGM-------------ATEDVITAKLIYDK 212 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~---a~~~a~~~~g~-------------~~~~v~~advvv~~ 212 (224)
.+++|+-||||+-..+.+-.+...+|- .-++.+++. |++.++...|+ ......+.|+|+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 689999999999999999888888874 566677654 34444221222 11234689999988
No 269
>CHL00194 ycf39 Ycf39; Provisional
Probab=68.10 E-value=12 Score=33.22 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=41.8
Q ss_pred EEEEEe-cCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc-----cCCC-----cccccccCcEEEEecc
Q psy13395 155 VLAIMG-SGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST-----KKGM-----ATEDVITAKLIYDKYQ 214 (224)
Q Consensus 155 ~l~iiG-aG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~-----~~g~-----~~~~v~~advvv~~~~ 214 (224)
+++|+| +|.+|+.-++.+...- .+++..|++++++.+... ...+ ..+++.+.|+||....
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 588999 6999999999988652 348888987766544321 0111 3566788999998644
No 270
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=67.61 E-value=8.6 Score=35.44 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=24.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCC
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRG 184 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~ 184 (224)
...+|+|+|+|..|-..++.+...- .+.+++.+
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4679999999999999999887653 23555443
No 271
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=66.74 E-value=10 Score=35.31 Aligned_cols=33 Identities=6% Similarity=0.173 Sum_probs=25.1
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCC
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRG 184 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~ 184 (224)
...+|+|||+|..|...++.+...-- +.+++.+
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46789999999999999999877542 3555543
No 272
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=66.73 E-value=10 Score=34.84 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=38.0
Q ss_pred EEEEEec-CHhHHHHHHHHHHhCCc----EEEeCCcchHHhhhhcc-----------CCCccccc-ccCcEEEEecccc
Q psy13395 155 VLAIMGS-GAQAYIHAKAFHASLKL----KKYNRGLTEGTVTGSTK-----------KGMATEDV-ITAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiGa-G~QA~~hl~a~~~v~~i----~v~~R~~~~a~~~a~~~-----------~g~~~~~v-~~advvv~~~~~~ 216 (224)
+++|+|+ |..|..+++.+.. +|. .++.+.....+.+.+.. .....+++ .+.|+|+.++...
T Consensus 2 kVaIiGATG~vG~ellr~L~~-hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~ 79 (346)
T TIGR01850 2 KVAIVGASGYTGGELLRLLLN-HPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG 79 (346)
T ss_pred EEEEECCCCHHHHHHHHHHHc-CCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch
Confidence 6899998 9999999999885 452 35454432333232210 11122334 3899999998754
No 273
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=66.66 E-value=10 Score=32.41 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=21.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL 176 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~ 176 (224)
...+|+|+|+|..|-..++.+...-
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~G 44 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAG 44 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC
Confidence 4679999999999999999987753
No 274
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=66.43 E-value=13 Score=34.28 Aligned_cols=61 Identities=11% Similarity=0.055 Sum_probs=38.3
Q ss_pred EEEEEecCHhHHH--------------------HHHHHHHh-CCcEEEeCCcchH-----HhhhhccCCC-----ccccc
Q psy13395 155 VLAIMGSGAQAYI--------------------HAKAFHAS-LKLKKYNRGLTEG-----TVTGSTKKGM-----ATEDV 203 (224)
Q Consensus 155 ~l~iiGaG~QA~~--------------------hl~a~~~v-~~i~v~~R~~~~a-----~~~a~~~~g~-----~~~~v 203 (224)
++.|.|+|.|=.+ ....+... +.+.+|+|++++. +.+.+ .|+ ..+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~--~Gi~~asd~~eaa 79 (342)
T PRK12557 2 KVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVED--AGVKVVSDDAEAA 79 (342)
T ss_pred eeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHH--CCCEEeCCHHHHH
Confidence 4778899988765 12222222 2249999998743 33322 233 35667
Q ss_pred ccCcEEEEeccccc
Q psy13395 204 ITAKLIYDKYQAQH 217 (224)
Q Consensus 204 ~~advvv~~~~~~~ 217 (224)
.++|+||.++-.++
T Consensus 80 ~~ADvVIlaVP~~~ 93 (342)
T PRK12557 80 KHGEIHILFTPFGK 93 (342)
T ss_pred hCCCEEEEECCCcH
Confidence 89999999987554
No 275
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=66.23 E-value=6.6 Score=37.40 Aligned_cols=41 Identities=12% Similarity=0.073 Sum_probs=33.8
Q ss_pred cEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST 194 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~ 194 (224)
..++|||.|++++..+.-+..- +.+.||||+.++-++|...
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~ 45 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE 45 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHh
Confidence 4689999999999987776553 3459999999999999763
No 276
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.67 E-value=9.9 Score=34.32 Aligned_cols=55 Identities=9% Similarity=-0.005 Sum_probs=39.9
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||. |.+|+-....|....- +.+|....+ -..+.+++|||||++.+..+
T Consensus 157 ~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~-----------~l~~~~~~ADIVI~avg~~~ 213 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR-----------NLAEVARKADILVVAIGRGH 213 (284)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC-----------CHHHHHhhCCEEEEecCccc
Confidence 6899999999 9999888888775432 388821111 24567889999999987643
No 277
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=65.46 E-value=12 Score=33.93 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=39.3
Q ss_pred EEEEEec-CHhHHHHHHHHHHhCCc----EEEeCCcchHH--hhhhc-----cCCC--c---ccccccCcEEEEecccc
Q psy13395 155 VLAIMGS-GAQAYIHAKAFHASLKL----KKYNRGLTEGT--VTGST-----KKGM--A---TEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiGa-G~QA~~hl~a~~~v~~i----~v~~R~~~~a~--~~a~~-----~~g~--~---~~~v~~advvv~~~~~~ 216 (224)
+++|||+ |..|..-+..+. ..++ .+++++..+++ +|.+. -.+. . .+++.+|||||-+-+..
T Consensus 2 KI~IIGaaG~VG~~~a~~l~-~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~ 79 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP 79 (310)
T ss_pred EEEEECCCCHHHHHHHHHHH-hCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence 6899999 999997776653 3443 88887722222 22221 1121 2 68899999999887763
No 278
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=65.23 E-value=29 Score=30.62 Aligned_cols=63 Identities=17% Similarity=0.103 Sum_probs=39.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccCCCccc--ccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGMATE--DVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~~~~--~v~~advvv~~~~~~ 216 (224)
...+++|+|+|..|...++.+.. +.. .++++++++.+. +....-+..+ .-...|+||.+++.+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~-~G~~~v~~~~~~~~rl~~-a~~~~~i~~~~~~~~g~Dvvid~~G~~ 211 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKA-AGGSPPAVWETNPRRRDG-ATGYEVLDPEKDPRRDYRAIYDASGDP 211 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHh-hhhccccChhhccCCCCCEEEECCCCH
Confidence 35678999999999999887655 343 456666655432 2221111111 123689999999864
No 279
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=64.86 E-value=9.6 Score=35.20 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=24.0
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhCCc---EEEeC
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASLKL---KKYNR 183 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R 183 (224)
..+++|+|+|.+|+.|++++...-.+ .|.++
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~ 38 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDP 38 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCC
Confidence 46999999999999999998764233 45544
No 280
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=64.21 E-value=33 Score=30.60 Aligned_cols=63 Identities=6% Similarity=-0.005 Sum_probs=41.3
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccCCC------c---cccc----ccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKKGM------A---TEDV----ITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~g~------~---~~~v----~~advvv~~~~~~ 216 (224)
...+++|+|+|..|...++.+...-. +.+.++++++.+...+ .|. . .+++ ...|+|+.+++..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~--lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~ 246 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE--MGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP 246 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH--cCCcEEecCCcccHHHHhccCCCCCEEEECCCCH
Confidence 46789999999999999987666432 3567788877654332 121 0 0111 1379999999863
No 281
>PLN02527 aspartate carbamoyltransferase
Probab=63.61 E-value=19 Score=32.60 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=40.5
Q ss_pred CCcEEEEEecC---HhHHHHHHHHHHhCCc--EEEeCCc-chHHhh---hhccCCC-------cccccccCcEEEEeccc
Q psy13395 152 KDLVLAIMGSG---AQAYIHAKAFHASLKL--KKYNRGL-TEGTVT---GSTKKGM-------ATEDVITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiGaG---~QA~~hl~a~~~v~~i--~v~~R~~-~~a~~~---a~~~~g~-------~~~~v~~advvv~~~~~ 215 (224)
+..+|+++|-+ ..++..+.++....++ .+..+.. +.-+.+ ++. .|. ..+++.+||||++ ++-
T Consensus 150 ~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~-~g~~~~~~~d~~~a~~~aDvvyt-~~~ 227 (306)
T PLN02527 150 DGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTS-KGVEWEESSDLMEVASKCDVLYQ-TRI 227 (306)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHH-cCCEEEEEcCHHHHhCCCCEEEE-CCc
Confidence 57899999987 6788888887665454 5555422 111222 222 222 4799999999999 444
Q ss_pred c
Q psy13395 216 Q 216 (224)
Q Consensus 216 ~ 216 (224)
|
T Consensus 228 q 228 (306)
T PLN02527 228 Q 228 (306)
T ss_pred c
Confidence 4
No 282
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=62.69 E-value=13 Score=35.21 Aligned_cols=59 Identities=15% Similarity=0.360 Sum_probs=40.4
Q ss_pred EEEEEecCHhHHHHHHHHHHhC------Cc---EEEeCCcchHHhh---hhc---cCCC---------cccccccCcEEE
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL------KL---KKYNRGLTEGTVT---GST---KKGM---------ATEDVITAKLIY 210 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~------~i---~v~~R~~~~a~~~---a~~---~~g~---------~~~~v~~advvv 210 (224)
+++|||+|-- +-...+..+. ++ .+++.++++.+.. +++ ..|. ..+++.+||.||
T Consensus 2 KI~iIGgGS~--~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi 79 (425)
T cd05197 2 KIAIIGGGSS--FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVI 79 (425)
T ss_pred EEEEECCchH--hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 6899999994 4444444332 22 8889999887543 332 2232 689999999999
Q ss_pred Eeccc
Q psy13395 211 DKYQA 215 (224)
Q Consensus 211 ~~~~~ 215 (224)
++.|.
T Consensus 80 ~~irv 84 (425)
T cd05197 80 NQFRV 84 (425)
T ss_pred Eeeec
Confidence 99875
No 283
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=62.39 E-value=19 Score=32.79 Aligned_cols=65 Identities=11% Similarity=0.019 Sum_probs=43.0
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHHhCCc--EEEeCCcc------hHHhhhhccCCC-----cccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHASLKL--KKYNRGLT------EGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~v~~i--~v~~R~~~------~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~~ 217 (224)
+..+|+++|- +..++..+.++... +. ++.++..- .+...+.+...+ ..+++.+||||++.+..|.
T Consensus 152 ~g~~va~vGd~~rv~~Sl~~~~~~~-G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~w~~~ 230 (311)
T PRK14804 152 NQKQLTYIGVHNNVVNSLIGITAAL-GIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDTWLDM 230 (311)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHc-CCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeeeeEEC
Confidence 5689999998 68899999987654 65 66665331 111222221122 5788999999999877653
No 284
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=61.49 E-value=21 Score=35.39 Aligned_cols=41 Identities=7% Similarity=0.034 Sum_probs=33.3
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHHhC-CcEEEeCCcchHHhhh
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHASL-KLKKYNRGLTEGTVTG 192 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a 192 (224)
+.++++|+|+ |.+|++.++.|+..- .+.++.|+.++++.+.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLV 121 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 7889999996 999999999987642 3488899998887654
No 285
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=59.52 E-value=24 Score=28.67 Aligned_cols=62 Identities=15% Similarity=0.105 Sum_probs=38.8
Q ss_pred CcEEEEEec--CHhHHHHHHHHHHhCCc--EEEeCCcch--H--Hhh------hhccCC------CcccccccCcEEEEe
Q psy13395 153 DLVLAIMGS--GAQAYIHAKAFHASLKL--KKYNRGLTE--G--TVT------GSTKKG------MATEDVITAKLIYDK 212 (224)
Q Consensus 153 ~~~l~iiGa--G~QA~~hl~a~~~v~~i--~v~~R~~~~--a--~~~------a~~~~g------~~~~~v~~advvv~~ 212 (224)
..+++++|- +..+++.+.++.. ++. .+..+..-. . +.+ +.+..+ -..+++.+||||++.
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~-~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAK-FGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHH-TTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHHH-cCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 468999994 7999999988766 444 566554411 1 122 221111 156899999999987
Q ss_pred ccc
Q psy13395 213 YQA 215 (224)
Q Consensus 213 ~~~ 215 (224)
.=.
T Consensus 81 ~~~ 83 (158)
T PF00185_consen 81 RWQ 83 (158)
T ss_dssp SSS
T ss_pred Ccc
Confidence 543
No 286
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=59.44 E-value=12 Score=34.73 Aligned_cols=61 Identities=15% Similarity=0.064 Sum_probs=47.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCC----------CcccccccCcEEEEe
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKG----------MATEDVITAKLIYDK 212 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g----------~~~~~v~~advvv~~ 212 (224)
.+..++|||-|..+..-.+...-..- +.|.+++.++.+.+-+...+ --.+++-.||+||.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEE
Confidence 36789999999999988888776654 49999999887766552211 157888999999986
No 287
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=59.21 E-value=17 Score=34.73 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=39.9
Q ss_pred EEEEEecCHhHHHHHHHHHHhC------Cc---EEEeCCcchHHhhhh---c---cCCC---------cccccccCcEEE
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL------KL---KKYNRGLTEGTVTGS---T---KKGM---------ATEDVITAKLIY 210 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~------~i---~v~~R~~~~a~~~a~---~---~~g~---------~~~~v~~advvv 210 (224)
.++|||+|-- + -...+..+. ++ .+++.++++.+.... + ..|. ..+++.+||.||
T Consensus 2 KI~iIGaGS~-~-tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi 79 (437)
T cd05298 2 KIVIAGGGST-Y-TPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVF 79 (437)
T ss_pred eEEEECCcHH-H-HHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEE
Confidence 6899999994 3 333333332 22 888999988755433 2 1232 589999999999
Q ss_pred Eeccc
Q psy13395 211 DKYQA 215 (224)
Q Consensus 211 ~~~~~ 215 (224)
++-+.
T Consensus 80 ~~irv 84 (437)
T cd05298 80 AQIRV 84 (437)
T ss_pred EEeee
Confidence 98764
No 288
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=58.73 E-value=17 Score=33.94 Aligned_cols=64 Identities=9% Similarity=0.074 Sum_probs=40.6
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhc-----------cCCCcccccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGST-----------KKGMATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~-----------~~g~~~~~v~~advvv~~~~~~ 216 (224)
...+++|+|+ |..|+.-++.+.. +|. ..+.++....+.+.+. ...+..+++.+.|+|+.++...
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~-hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLAN-HPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHh-CCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 4679999998 8888888887655 463 4445444333332221 1122444567899999998764
No 289
>PRK04148 hypothetical protein; Provisional
Probab=57.29 E-value=30 Score=27.77 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=28.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhh
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGS 193 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~ 193 (224)
+..+++.||+| -+....+.+...- .+...+.+++..+...+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~ 57 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKK 57 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 45789999999 6666676666543 23888888886654443
No 290
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=57.19 E-value=41 Score=30.35 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=42.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh------------CCcEEEeCC----------cchHHhhhhccC----CCcccccc-
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS------------LKLKKYNRG----------LTEGTVTGSTKK----GMATEDVI- 204 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v------------~~i~v~~R~----------~~~a~~~a~~~~----g~~~~~v~- 204 (224)
...+++|+|+|.-+....+.+... .+|.++++. .+.-+.|++... +-..+.|.
T Consensus 24 ~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~ 103 (279)
T cd05312 24 SDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKA 103 (279)
T ss_pred hhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHh
Confidence 478999999999998888777775 122233332 122355665322 44788888
Q ss_pred -cCcEEEEecc
Q psy13395 205 -TAKLIYDKYQ 214 (224)
Q Consensus 205 -~advvv~~~~ 214 (224)
++||+|..++
T Consensus 104 v~ptvlIG~S~ 114 (279)
T cd05312 104 VKPTVLIGLSG 114 (279)
T ss_pred cCCCEEEEeCC
Confidence 9999998775
No 291
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=56.99 E-value=15 Score=33.63 Aligned_cols=63 Identities=13% Similarity=0.063 Sum_probs=40.5
Q ss_pred EEEEEe-cCHhHHHHHHHHHHh-CCc---EEEeCCcchHHhhhhc-----cCCCcccccccCcEEEEeccccc
Q psy13395 155 VLAIMG-SGAQAYIHAKAFHAS-LKL---KKYNRGLTEGTVTGST-----KKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 155 ~l~iiG-aG~QA~~hl~a~~~v-~~i---~v~~R~~~~a~~~a~~-----~~g~~~~~v~~advvv~~~~~~~ 217 (224)
+++|+| +|..|+..++.+..- +|. .+..+.....+.+... ...+..+++.+.|+||.+++...
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~ 73 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSV 73 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHH
Confidence 478999 899999999987653 553 4444444333333221 11234566788999999988653
No 292
>KOG2380|consensus
Probab=56.89 E-value=25 Score=33.18 Aligned_cols=66 Identities=17% Similarity=0.065 Sum_probs=46.2
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCcch--HHhhhhccCCCccccc-ccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGLTE--GTVTGSTKKGMATEDV-ITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~~--a~~~a~~~~g~~~~~v-~~advvv~~~~~~~ 217 (224)
.+.+++|||-|.+|+...+-+...--. .+.+|+.-. ++.++.+......+-+ ++.|+|+-.|.+-|
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsils 120 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILS 120 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehhhh
Confidence 488999999999999999998887655 777877621 2333333333344433 28999998887754
No 293
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.72 E-value=21 Score=32.21 Aligned_cols=54 Identities=9% Similarity=-0.084 Sum_probs=36.7
Q ss_pred CCcEEEEEecC-HhHHHHHHHHHHhCC-cEE-EeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSG-AQAYIHAKAFHASLK-LKK-YNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG-~QA~~hl~a~~~v~~-i~v-~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
.-++++|||-| ..|+--...|...-- +.+ .+++++ ..+.+++|||||++++..+
T Consensus 156 ~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~------------l~~~~~~ADIvV~AvG~p~ 212 (285)
T PRK14191 156 KGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKD------------LSFYTQNADIVCVGVGKPD 212 (285)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHH------------HHHHHHhCCEEEEecCCCC
Confidence 57999999999 777766666654322 233 333321 2467889999999998654
No 294
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=56.65 E-value=14 Score=34.80 Aligned_cols=40 Identities=8% Similarity=0.108 Sum_probs=30.8
Q ss_pred cEEEEEe-cCHhHHHHHHHHHHhC---Cc--EEEeCCcchHHhhhh
Q psy13395 154 LVLAIMG-SGAQAYIHAKAFHASL---KL--KKYNRGLTEGTVTGS 193 (224)
Q Consensus 154 ~~l~iiG-aG~QA~~hl~a~~~v~---~i--~v~~R~~~~a~~~a~ 193 (224)
++++|+| +|-+|..|+..+.... .+ ...+++.+++++++.
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~ 47 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAR 47 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHH
Confidence 5899999 9999999999987643 23 444788888777765
No 295
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.60 E-value=24 Score=31.93 Aligned_cols=53 Identities=6% Similarity=0.016 Sum_probs=36.7
Q ss_pred CCcEEEEEecCHh-HHHHHHHHHHhCCc--EEEe-CCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQ-AYIHAKAFHASLKL--KKYN-RGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~Q-A~~hl~a~~~v~~i--~v~~-R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||.|.. |+-....+.. +.- .++. +++ . ..+.+++|||||++++..+
T Consensus 157 ~Gk~vvViGrs~iVGkPla~lL~~-~~atVt~~hs~t~-----------~-l~~~~~~ADIVV~avG~~~ 213 (285)
T PRK14189 157 RGAHAVVIGRSNIVGKPMAMLLLQ-AGATVTICHSKTR-----------D-LAAHTRQADIVVAAVGKRN 213 (285)
T ss_pred CCCEEEEECCCCccHHHHHHHHHH-CCCEEEEecCCCC-----------C-HHHHhhhCCEEEEcCCCcC
Confidence 6899999999998 7766666554 333 3332 221 1 3467789999999998654
No 296
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=56.09 E-value=24 Score=32.43 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=38.8
Q ss_pred CCcEEEEEecC--HhHHHHHHHHHHhCCc--EEEeCCc-----c---hHHhhhhccCC--C-----cccccccCcEEEEe
Q psy13395 152 KDLVLAIMGSG--AQAYIHAKAFHASLKL--KKYNRGL-----T---EGTVTGSTKKG--M-----ATEDVITAKLIYDK 212 (224)
Q Consensus 152 ~~~~l~iiGaG--~QA~~hl~a~~~v~~i--~v~~R~~-----~---~a~~~a~~~~g--~-----~~~~v~~advvv~~ 212 (224)
+..+|+++|-+ ..++..++++.. ++. ++.++.. + .++.+++. .| + ..+++.+||||++.
T Consensus 154 ~g~kia~vGD~~~~v~~Sl~~~~~~-~g~~v~~~~P~~~~~~~~~~~~~~~~~~~-~g~~~~~~~d~~ea~~~aDvvy~~ 231 (332)
T PRK04284 154 KDIKFTYVGDGRNNVANALMQGAAI-MGMDFHLVCPKELNPDDELLNKCKEIAAE-TGGKITITDDIDEGVKGSDVIYTD 231 (332)
T ss_pred CCcEEEEecCCCcchHHHHHHHHHH-cCCEEEEECCccccCCHHHHHHHHHHHHH-cCCeEEEEcCHHHHhCCCCEEEEC
Confidence 67899999986 778888887664 464 5554431 1 12233322 23 1 57889999999996
Q ss_pred c
Q psy13395 213 Y 213 (224)
Q Consensus 213 ~ 213 (224)
.
T Consensus 232 ~ 232 (332)
T PRK04284 232 V 232 (332)
T ss_pred C
Confidence 4
No 297
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.64 E-value=31 Score=32.77 Aligned_cols=63 Identities=8% Similarity=0.038 Sum_probs=42.2
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhh----ccC-CCcccccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGS----TKK-GMATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~----~~~-g~~~~~v~~advvv~~~~~~ 216 (224)
..++++|+|.|.-|++-++.+.. .. .+|+..++....+.+ ... +...+.+.+.|+||.+-+-.
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~--g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~ 74 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN--KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIP 74 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC--CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCC
Confidence 35789999999999999999884 43 889865444333222 111 22334466899999887654
No 298
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=54.53 E-value=64 Score=27.67 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=22.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS 175 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v 175 (224)
...+++|.|.|..|++-++.+...
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~ 45 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE 45 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc
Confidence 578999999999999999999887
No 299
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=54.28 E-value=33 Score=23.94 Aligned_cols=34 Identities=18% Similarity=0.078 Sum_probs=26.3
Q ss_pred EEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchH
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEG 188 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a 188 (224)
+++|||.|..|-.-...+.+... +.++.|.+.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999988553 36666665543
No 300
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=53.82 E-value=25 Score=32.14 Aligned_cols=62 Identities=11% Similarity=0.171 Sum_probs=39.2
Q ss_pred cEEEEEe-cCHhHHHHHHHHHHhCCc---EEEeCCcchHH-hhhh-----------------ccCCCcccccccCcEEEE
Q psy13395 154 LVLAIMG-SGAQAYIHAKAFHASLKL---KKYNRGLTEGT-VTGS-----------------TKKGMATEDVITAKLIYD 211 (224)
Q Consensus 154 ~~l~iiG-aG~QA~~hl~a~~~v~~i---~v~~R~~~~a~-~~a~-----------------~~~g~~~~~v~~advvv~ 211 (224)
.+++|+| +|..|+..++.+.. +|. ..+.++..++. .+.+ .-.+...+++.++|+|+.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~-~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLAN-HPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAVDDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHc-CCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHhcCCCEEEE
Confidence 5899998 89999999998886 543 33334443321 1110 001224566678999999
Q ss_pred ecccc
Q psy13395 212 KYQAQ 216 (224)
Q Consensus 212 ~~~~~ 216 (224)
++...
T Consensus 83 a~p~~ 87 (349)
T PRK08664 83 ALPSD 87 (349)
T ss_pred eCChh
Confidence 87664
No 301
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=53.64 E-value=37 Score=31.50 Aligned_cols=63 Identities=17% Similarity=0.119 Sum_probs=42.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc--CCC------cccccc-cCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK--KGM------ATEDVI-TAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~--~g~------~~~~v~-~advvv~~~~ 214 (224)
..+.|+|+|+|..|..-++...+.. .+..++|++++.+...+-. ..+ ..+++. .+|+|+....
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG 238 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC
Confidence 4889999999988888888777654 3588999998864443310 001 122222 2999998876
No 302
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=53.17 E-value=23 Score=33.62 Aligned_cols=59 Identities=14% Similarity=0.271 Sum_probs=38.6
Q ss_pred EEEEEecCHhHHHHHHHHHHhC------Cc---EEEeCC-cchHHhh---hhc---cCC--C-------cccccccCcEE
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL------KL---KKYNRG-LTEGTVT---GST---KKG--M-------ATEDVITAKLI 209 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~------~i---~v~~R~-~~~a~~~---a~~---~~g--~-------~~~~v~~advv 209 (224)
+++|||+|-- +-...+..+. ++ .+++.+ +++.+.. +++ ..| + ..+++.+||.|
T Consensus 2 KI~iIGaGS~--~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfV 79 (419)
T cd05296 2 KLTIIGGGSS--YTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFV 79 (419)
T ss_pred EEEEECCchH--hHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence 6899999995 3333333322 22 888999 7775443 331 223 1 58899999999
Q ss_pred EEeccc
Q psy13395 210 YDKYQA 215 (224)
Q Consensus 210 v~~~~~ 215 (224)
|++.+.
T Consensus 80 i~~~~v 85 (419)
T cd05296 80 FTQIRV 85 (419)
T ss_pred EEEEee
Confidence 998775
No 303
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=53.04 E-value=22 Score=26.18 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=28.3
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--c-EEEeCCcchH
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--L-KKYNRGLTEG 188 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i-~v~~R~~~~a 188 (224)
+..+++|+|+|..++..+..+...+. + .+++.++++.
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~ 41 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKI 41 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTT
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCcc
Confidence 56899999999998877755555554 4 8899888864
No 304
>PLN02427 UDP-apiose/xylose synthase
Probab=52.76 E-value=31 Score=31.34 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=30.3
Q ss_pred CCcEEEEEe-cCHhHHHHHHHHHHh--CCcEEEeCCcchHHhh
Q psy13395 152 KDLVLAIMG-SGAQAYIHAKAFHAS--LKLKKYNRGLTEGTVT 191 (224)
Q Consensus 152 ~~~~l~iiG-aG~QA~~hl~a~~~v--~~i~v~~R~~~~a~~~ 191 (224)
.+.+++|.| +|.+|...++.|..- ..+.+++|+.++.+.+
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l 55 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHL 55 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhh
Confidence 456899999 599999999999875 3357778877665443
No 305
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=52.47 E-value=32 Score=31.69 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=38.6
Q ss_pred CCcEEEEEecC--HhHHHHHHHHHHhCCc--EEEeCCc--------chHHhhhhccCC-C-----cccccccCcEEEEec
Q psy13395 152 KDLVLAIMGSG--AQAYIHAKAFHASLKL--KKYNRGL--------TEGTVTGSTKKG-M-----ATEDVITAKLIYDKY 213 (224)
Q Consensus 152 ~~~~l~iiGaG--~QA~~hl~a~~~v~~i--~v~~R~~--------~~a~~~a~~~~g-~-----~~~~v~~advvv~~~ 213 (224)
+..+++++|-+ ..++..+.++.. ++. ++.++.. +.++.++....+ + ..+++.+||||++..
T Consensus 155 ~gl~va~vGD~~~~v~~S~~~~~~~-~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~ 233 (334)
T PRK12562 155 NEMTLVYAGDARNNMGNSMLEAAAL-TGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDV 233 (334)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-cCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 56899999986 577887877654 454 5555432 122333332111 1 468899999999975
No 306
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=51.36 E-value=22 Score=33.84 Aligned_cols=40 Identities=15% Similarity=0.007 Sum_probs=34.2
Q ss_pred cEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhh
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGS 193 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~ 193 (224)
.+++|+|+|+.|.....-+...+. +-+.+|...+.++|-+
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~ 43 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFE 43 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHH
Confidence 479999999999988888887776 4899999888888876
No 307
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=50.16 E-value=50 Score=29.53 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=39.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeC---CcchHHhhhhccCCC-----ccc------ccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNR---GLTEGTVTGSTKKGM-----ATE------DVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R---~~~~a~~~a~~~~g~-----~~~------~v~~advvv~~~~~~ 216 (224)
...+++|+|+|..|...++.+...- .+.+.+| ++++.+ ++++ .|. ..+ ....+|+||.+++..
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~-~~~~-~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 249 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKAD-IVEE-LGATYVNSSKTPVAEVKLVGEFDLIIEATGVP 249 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHH-HHHH-cCCEEecCCccchhhhhhcCCCCEEEECcCCH
Confidence 3568899999999999887655542 2366777 344444 4332 121 111 123589999999853
No 308
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.02 E-value=43 Score=31.85 Aligned_cols=64 Identities=11% Similarity=0.036 Sum_probs=42.0
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcc-h---HHhhhhc----cCCCcccccccCcEEEEecccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLT-E---GTVTGST----KKGMATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~-~---a~~~a~~----~~g~~~~~v~~advvv~~~~~~ 216 (224)
-++++|+|.|.-|+.-++.+...-- +.+|+-... . .+.|.+. ..+-..+.+.+.|+||.+-+--
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~ 80 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGIS 80 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCC
Confidence 3679999999999999999887543 388874322 1 1233221 1122445677899999887653
No 309
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=49.92 E-value=38 Score=29.21 Aligned_cols=62 Identities=13% Similarity=0.122 Sum_probs=40.7
Q ss_pred EEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhh---ccCCC-----cccccccCcEEEEecccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGS---TKKGM-----ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~---~~~g~-----~~~~v~~advvv~~~~~~ 216 (224)
.++|||+-..+-.++--=..-|. +...-|++++..++.. ....+ ..+++.+-|+||++.++-
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 58899976655554433333344 5777888888765522 11122 468999999999999876
No 310
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.65 E-value=24 Score=31.84 Aligned_cols=54 Identities=6% Similarity=-0.065 Sum_probs=36.1
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||-+..=-.=+..++.-+.- .+.+++++ ..+-+++|||||++.+..+
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~------------l~~~~~~ADIvI~AvG~~~ 212 (284)
T PRK14170 156 EGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKD------------LPQVAKEADILVVATGLAK 212 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCC------------HHHHHhhCCEEEEecCCcC
Confidence 688999999887655555555554543 34444432 3455788999999988654
No 311
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=49.56 E-value=35 Score=31.36 Aligned_cols=59 Identities=7% Similarity=0.036 Sum_probs=37.8
Q ss_pred CCcEEEEEecC--HhHHHHHHHHHHhCCc--EEEeCCc--------chHHhhhhccCC--C-----cccccccCcEEEEe
Q psy13395 152 KDLVLAIMGSG--AQAYIHAKAFHASLKL--KKYNRGL--------TEGTVTGSTKKG--M-----ATEDVITAKLIYDK 212 (224)
Q Consensus 152 ~~~~l~iiGaG--~QA~~hl~a~~~v~~i--~v~~R~~--------~~a~~~a~~~~g--~-----~~~~v~~advvv~~ 212 (224)
+..+|+++|-+ ..++..+.++.. ++. ++..+.. +.++.+++. .| + ..+++.+||||++.
T Consensus 155 ~gl~ia~vGD~~~~v~~Sl~~~~~~-~g~~v~~~~P~~~~p~~~~~~~~~~~~~~-~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 155 SEISYVYIGDARNNMGNSLLLIGAK-LGMDVRICAPKALLPEASLVEMCEKFAKE-SGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHH-cCCEEEEECCchhcCCHHHHHHHHHHHHH-cCCeEEEEcCHHHHhCCCCEEEEc
Confidence 56899999996 467777777655 464 5554331 112334332 23 1 46889999999994
No 312
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=49.43 E-value=85 Score=27.08 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.5
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS 175 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v 175 (224)
...+++|.|.|..|++-++.+...
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~ 53 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEA 53 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHC
Confidence 578999999999999999988764
No 313
>PTZ00188 adrenodoxin reductase; Provisional
Probab=49.22 E-value=29 Score=33.88 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=43.2
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcc------------h------HHhhhh--ccCC------------
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLT------------E------GTVTGS--TKKG------------ 197 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~------------~------a~~~a~--~~~g------------ 197 (224)
.+++|+|||+|+-|.+-.+.++..+. +.||.+.+. + .+.|.. ...+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~D 117 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGVD 117 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecCc
Confidence 57899999999999999887765443 255543322 1 122211 0011
Q ss_pred Cccccc-ccCcEEEEecccccccC
Q psy13395 198 MATEDV-ITAKLIYDKYQAQHSNC 220 (224)
Q Consensus 198 ~~~~~v-~~advvv~~~~~~~~~~ 220 (224)
+..+++ ...|.||-+||++....
T Consensus 118 vt~eeL~~~YDAVIlAtGA~~l~i 141 (506)
T PTZ00188 118 LKMEELRNHYNCVIFCCGASEVSI 141 (506)
T ss_pred cCHHHHHhcCCEEEEEcCCCCCCC
Confidence 134444 37899999999996643
No 314
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=48.21 E-value=29 Score=31.68 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=37.6
Q ss_pred EEEEEec-CHhHHHHHHHHHHhCC---c-EEEeCCcchHHhhhhc--------c----C-----CCcccccccCcEEEEe
Q psy13395 155 VLAIMGS-GAQAYIHAKAFHASLK---L-KKYNRGLTEGTVTGST--------K----K-----GMATEDVITAKLIYDK 212 (224)
Q Consensus 155 ~l~iiGa-G~QA~~hl~a~~~v~~---i-~v~~R~~~~a~~~a~~--------~----~-----g~~~~~v~~advvv~~ 212 (224)
+++|+|+ |..|...++.+.. ++ + .++.++.+..+.+.+. . . ++..+...+.|+|+.+
T Consensus 2 kVaIvGatG~~G~~L~~~l~~-~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 2 RVAVLGATGLVGQKFVKLLAK-HPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred EEEEECCCCHHHHHHHHHHHh-CCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 6899995 8888888886655 44 3 6655544333333210 0 1 2234456789999998
Q ss_pred cccc
Q psy13395 213 YQAQ 216 (224)
Q Consensus 213 ~~~~ 216 (224)
+...
T Consensus 81 ~p~~ 84 (341)
T TIGR00978 81 LPSE 84 (341)
T ss_pred CCHH
Confidence 8654
No 315
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=48.17 E-value=41 Score=27.69 Aligned_cols=55 Identities=5% Similarity=-0.033 Sum_probs=29.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
.-++++|||-+..=-.-+..++.-+.. .+.....+. ..+-+.+|||||++.+..+
T Consensus 35 ~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~-----------l~~~~~~ADIVVsa~G~~~ 91 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKN-----------LQEITRRADIVVSAVGKPN 91 (160)
T ss_dssp TT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSS-----------HHHHHTTSSEEEE-SSSTT
T ss_pred CCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCc-----------ccceeeeccEEeeeecccc
Confidence 678999999986444444444444443 444333222 2345568899998887643
No 316
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=47.79 E-value=38 Score=32.56 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=44.0
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhc---cCCC-------cccccccCcEEEEecc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGST---KKGM-------ATEDVITAKLIYDKYQ 214 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~---~~g~-------~~~~v~~advvv~~~~ 214 (224)
..++++|+|.|.-++.-++.+....- +.+|+..+.. +-.... .+++ ..++..++|+||.+-+
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPG 78 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP-EGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPG 78 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc-cchhhhhhhccCceeecCccchhccccCCEEEECCC
Confidence 36789999999999999999988664 3888866655 211111 1222 3378899999998765
No 317
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.48 E-value=28 Score=31.41 Aligned_cols=53 Identities=8% Similarity=-0.036 Sum_probs=34.6
Q ss_pred CCcEEEEEecC-HhHHHHHHHHHHhCC--cE-EEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSG-AQAYIHAKAFHASLK--LK-KYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG-~QA~~hl~a~~~v~~--i~-v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
.-++++|||-+ ..|+--...|.. +. +. +.+++++ ..+-+++|||||++++..+
T Consensus 156 ~Gk~vvViGrS~~VG~Pla~lL~~-~~AtVti~hs~T~~------------l~~~~~~ADIvV~AvGkp~ 212 (281)
T PRK14183 156 KGKDVCVVGASNIVGKPMAALLLN-ANATVDICHIFTKD------------LKAHTKKADIVIVGVGKPN 212 (281)
T ss_pred CCCEEEEECCCCcchHHHHHHHHH-CCCEEEEeCCCCcC------------HHHHHhhCCEEEEecCccc
Confidence 67899999999 556555555443 33 23 3333321 2456789999999998754
No 318
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.39 E-value=26 Score=31.70 Aligned_cols=54 Identities=7% Similarity=-0.047 Sum_probs=36.1
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||-+..--.=+..++.-+.- .+.+|+++ ..+-+++|||||++.+..+
T Consensus 158 ~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~~------------L~~~~~~ADIvV~AvGkp~ 214 (288)
T PRK14171 158 TGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHN------------LSSITSKADIVVAAIGSPL 214 (288)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCC------------HHHHHhhCCEEEEccCCCC
Confidence 578899999887665555555555553 33445432 3455778999999998654
No 319
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=47.25 E-value=47 Score=30.55 Aligned_cols=60 Identities=13% Similarity=0.034 Sum_probs=37.2
Q ss_pred CcEEEEEecC-------HhHHHHHHHHHHhCCc--EEEeCC----cc-----hHHhhhhccCC-C-----cccccccCcE
Q psy13395 153 DLVLAIMGSG-------AQAYIHAKAFHASLKL--KKYNRG----LT-----EGTVTGSTKKG-M-----ATEDVITAKL 208 (224)
Q Consensus 153 ~~~l~iiGaG-------~QA~~hl~a~~~v~~i--~v~~R~----~~-----~a~~~a~~~~g-~-----~~~~v~~adv 208 (224)
..+++|.+.| ..++..+.++.. ++. ++.+++ +. .++.+++...+ + ..+++.+|||
T Consensus 169 g~ki~i~~~gd~~~~~~~v~~S~~~~~~~-~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDv 247 (335)
T PRK04523 169 GKKYVLTWTYHPKPLNTAVANSALLIATR-LGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGADV 247 (335)
T ss_pred CCEEEEEEeccCcccccHHHHHHHHHHHH-cCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCE
Confidence 5678776644 678888887654 565 777762 11 12223332111 1 5788999999
Q ss_pred EEEec
Q psy13395 209 IYDKY 213 (224)
Q Consensus 209 vv~~~ 213 (224)
|++.+
T Consensus 248 vy~~~ 252 (335)
T PRK04523 248 VYAKS 252 (335)
T ss_pred EEece
Confidence 99965
No 320
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.09 E-value=35 Score=30.84 Aligned_cols=55 Identities=11% Similarity=-0.010 Sum_probs=36.2
Q ss_pred CCcEEEEEecCH-hHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGA-QAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~-QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||-|. .|+-....|....- +.+..+... . ..+.+++|||||++.+..+
T Consensus 158 ~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~----------~-l~~~~~~ADIvi~avG~p~ 214 (285)
T PRK10792 158 YGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTK----------N-LRHHVRNADLLVVAVGKPG 214 (285)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCC----------C-HHHHHhhCCEEEEcCCCcc
Confidence 578999999999 77766666554322 344433211 1 4566789999999987654
No 321
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.01 E-value=29 Score=31.37 Aligned_cols=54 Identities=7% Similarity=-0.049 Sum_probs=35.0
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
.-++++|||-+..=-.=+..++.-+.- .+.+++++ ..+.+++|||||++.+..+
T Consensus 154 ~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~~------------l~~~~~~ADIvIsAvGkp~ 210 (287)
T PRK14173 154 AGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQD------------LPAVTRRADVLVVAVGRPH 210 (287)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCCC------------HHHHHhhCCEEEEecCCcC
Confidence 578999999876554444444444442 33444432 3456778999999988654
No 322
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=45.94 E-value=43 Score=31.06 Aligned_cols=65 Identities=8% Similarity=0.095 Sum_probs=41.1
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHH--hCCc----EEEeC-CcchHHhhhhcc---CCCcccccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHA--SLKL----KKYNR-GLTEGTVTGSTK---KGMATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~--v~~i----~v~~R-~~~~a~~~a~~~---~g~~~~~v~~advvv~~~~~~ 216 (224)
+..+++|+|+ |..|+..++.+.. .+++ .+-++ +..+.-.|.... +.+..++..+.|+|+.++...
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~~~~Divf~a~~~~ 79 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGE 79 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHhcCCCEEEECCChH
Confidence 4568999998 9999999999984 3453 23332 222222232211 123456677899999998654
No 323
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.41 E-value=30 Score=31.20 Aligned_cols=54 Identities=9% Similarity=-0.109 Sum_probs=35.3
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||-+..=-.=+..++.-+.- .+.+++++ ..+-+++|||||++.+..+
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~n------------l~~~~~~ADIvIsAvGkp~ 212 (282)
T PRK14166 156 EGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKD------------LSLYTRQADLIIVAAGCVN 212 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCC------------HHHHHhhCCEEEEcCCCcC
Confidence 578999999876655555555544543 33344432 3455778999999988755
No 324
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.55 E-value=33 Score=30.94 Aligned_cols=54 Identities=7% Similarity=-0.015 Sum_probs=35.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEE-eCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKY-NRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~-~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||-+..=-.=+..++.-+.- .+. +++++ ..+.+++|||||++.+..+
T Consensus 155 ~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~~------------l~~~~~~ADIvI~AvG~p~ 211 (282)
T PRK14169 155 AGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRN------------LKQLTKEADILVVAVGVPH 211 (282)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCCC------------HHHHHhhCCEEEEccCCcC
Confidence 578999999876655555555544543 333 45532 3456788999999988654
No 325
>KOG2742|consensus
Probab=44.05 E-value=14 Score=34.36 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=27.6
Q ss_pred EEEEecCHhHHHHHHHHHHhC-Cc-EEEeCCcchHHhhhh
Q psy13395 156 LAIMGSGAQAYIHAKAFHASL-KL-KKYNRGLTEGTVTGS 193 (224)
Q Consensus 156 l~iiGaG~QA~~hl~a~~~v~-~i-~v~~R~~~~a~~~a~ 193 (224)
++|||+|.-|+-.+-.+.+.. .+ .+|+|+.+.+++.+.
T Consensus 5 v~v~GTg~~arv~iP~l~e~~f~v~A~w~Rt~~ea~a~aa 44 (367)
T KOG2742|consen 5 VGVFGTGIFARVLIPLLKEEGFEVKAIWGRTKTEAKAKAA 44 (367)
T ss_pred eeEeccChhHhhhhhhhhhccchHhhhhchhhhHHHHhhh
Confidence 899999999999965555543 12 999996665555543
No 326
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=43.82 E-value=39 Score=28.51 Aligned_cols=33 Identities=21% Similarity=0.106 Sum_probs=26.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCC
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRG 184 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~ 184 (224)
...+++|+|+|..|...++.+.+.- .+.+++++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 5678999999999999999887753 24777766
No 327
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=43.65 E-value=41 Score=30.99 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=39.7
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHHh-CCc----EEEeCC-cchHHhhhhcc---CCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHAS-LKL----KKYNRG-LTEGTVTGSTK---KGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~v-~~i----~v~~R~-~~~a~~~a~~~---~g~~~~~v~~advvv~~~~~~~ 217 (224)
+..+++|+|+ |..|+..++.+... +|. .+-++. ..+--.|.... +.+...+..+.|||+.++....
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~ 78 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREA 78 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHH
Confidence 4678999998 99999999988874 675 333332 11111122110 1112223368899999987643
No 328
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.97 E-value=79 Score=29.39 Aligned_cols=62 Identities=10% Similarity=0.040 Sum_probs=39.3
Q ss_pred cEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHh---hhhccCCCcccc-cccCcEEEEecccc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTV---TGSTKKGMATED-VITAKLIYDKYQAQ 216 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~---~a~~~~g~~~~~-v~~advvv~~~~~~ 216 (224)
++++|||.|..|..-++++...-. +..++++++..+. +.+.... ..+. ..++|+||.+.+-.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLE-NAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcC-CcHHHhcCCCEEEECCCCC
Confidence 579999999999997777665432 3778877654321 1111111 2223 35799999987654
No 329
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=42.94 E-value=31 Score=31.02 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=29.8
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchH---HhhhhccCC----C---------cccccccCcEEEEec
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEG---TVTGSTKKG----M---------ATEDVITAKLIYDKY 213 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a---~~~a~~~~g----~---------~~~~v~~advvv~~~ 213 (224)
+++|++||+|+.=.+-+.......+ +..++++++.. +++.....| + ...++...|+|+-|-
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 5799999999998887777655443 26788888643 333331111 1 345677889998775
Q ss_pred cc
Q psy13395 214 QA 215 (224)
Q Consensus 214 ~~ 215 (224)
-.
T Consensus 201 lV 202 (276)
T PF03059_consen 201 LV 202 (276)
T ss_dssp T-
T ss_pred hc
Confidence 43
No 330
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=42.13 E-value=43 Score=31.34 Aligned_cols=62 Identities=8% Similarity=0.086 Sum_probs=39.8
Q ss_pred EEEEEec-CHhHHHHHHHHHHh--CCc---EEEeC--CcchHHhhhhccC---CCcc-cccccCcEEEEecccc
Q psy13395 155 VLAIMGS-GAQAYIHAKAFHAS--LKL---KKYNR--GLTEGTVTGSTKK---GMAT-EDVITAKLIYDKYQAQ 216 (224)
Q Consensus 155 ~l~iiGa-G~QA~~hl~a~~~v--~~i---~v~~R--~~~~a~~~a~~~~---g~~~-~~v~~advvv~~~~~~ 216 (224)
+|+|+|+ |..|+..++.+..- ||+ ++++- +..+.-.|..+.. .... ++..+.|||+.+.+..
T Consensus 2 ~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~~ 75 (366)
T TIGR01745 2 NVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGGD 75 (366)
T ss_pred eEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCHH
Confidence 6899998 99999999987744 453 44432 2233334433221 2223 3678899999988764
No 331
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=41.89 E-value=25 Score=27.98 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=23.1
Q ss_pred EEEEecCHhHHHHHHHHHHhCCc--EEEeCCcch
Q psy13395 156 LAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTE 187 (224)
Q Consensus 156 l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~ 187 (224)
|.|||+|..|+.-.+....+ ++ .+++..++.
T Consensus 1 L~I~GaG~va~al~~la~~l-g~~v~v~d~r~e~ 33 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL-GFRVTVVDPRPER 33 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC-TEEEEEEES-CCC
T ss_pred CEEEeCcHHHHHHHHHHHhC-CCEEEEEcCCccc
Confidence 68999999999998886664 54 888887763
No 332
>KOG1800|consensus
Probab=41.70 E-value=55 Score=31.32 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=25.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-c--EEEeCC
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-L--KKYNRG 184 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i--~v~~R~ 184 (224)
...+|+|||+|+-|.+....++.-.+ + .||-+.
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~ 54 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKL 54 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecC
Confidence 45599999999999999999988643 3 555543
No 333
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.91 E-value=40 Score=30.63 Aligned_cols=54 Identities=4% Similarity=-0.071 Sum_probs=36.5
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||-+..=-.=+..++..+.- .+.++++. ..+-+++|||||++.+..+
T Consensus 159 ~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~~------------l~~~~~~ADIvVsAvGkp~ 215 (294)
T PRK14187 159 SGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRD------------LADYCSKADILVAAVGIPN 215 (294)
T ss_pred CCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCCC------------HHHHHhhCCEEEEccCCcC
Confidence 688999999887766666666655553 33444432 2445788999999988654
No 334
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=40.83 E-value=41 Score=32.83 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=21.4
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGL 185 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~ 185 (224)
+++|+|||+|+-|..-++.+++.- ++.+|-++.
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~ 34 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSD 34 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCC
Confidence 478999999999999999987642 125555443
No 335
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.80 E-value=66 Score=28.28 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=39.3
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhC-Cc---EEEeCCcchHHhhhh--------ccCCC----cccccccCcEEEEecccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASL-KL---KKYNRGLTEGTVTGS--------TKKGM----ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i---~v~~R~~~~a~~~a~--------~~~g~----~~~~v~~advvv~~~~~~ 216 (224)
...++|||+|.++--.+--+++-- ++ ...+.++++- -|+. +.+|+ ..-+-.+-|+|+.+|++-
T Consensus 4 k~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgidp~sd-glaraarlgv~tt~egv~~ll~~p~~~di~lvfdatsa~ 82 (310)
T COG4569 4 KRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSD-GLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATSAG 82 (310)
T ss_pred cceEEEEccCcccHHHHHHHHhcCCcccceeEEccCCCcc-HHHHHHhcCCcchhhHHHHHHhCCCCCCcceEEeccccc
Confidence 467999999999987665555542 34 5556666541 1222 12332 344455667999999874
No 336
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=40.70 E-value=68 Score=31.83 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=26.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGL 185 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~ 185 (224)
..++|+|||+|+-|..-...+...- .+.||.+.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 5799999999999998887776642 247777665
No 337
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=40.60 E-value=60 Score=26.21 Aligned_cols=41 Identities=10% Similarity=-0.077 Sum_probs=31.1
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhh
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGS 193 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~ 193 (224)
.+.+++|+|+|..|..=++.+..+ +. .+++..+++.+.+.+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~~~~~~~~~ 61 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERPERLRQLES 61 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCHHHHHhhhc
Confidence 578999999999999999988875 54 888888877665544
No 338
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=40.37 E-value=67 Score=29.61 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=40.6
Q ss_pred CCcEEEEEecC---HhHHHHHHHHHHhCCc--EEEeCCcch-HHhhhhc--cCC--C-----cccccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSG---AQAYIHAKAFHASLKL--KKYNRGLTE-GTVTGST--KKG--M-----ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG---~QA~~hl~a~~~v~~i--~v~~R~~~~-a~~~a~~--~~g--~-----~~~~v~~advvv~~~~~~ 216 (224)
+..+|+++|-| ..+...+.++...++. ++.++..=. -+.+.+. ..| + ..+++.+||||++. +-|
T Consensus 158 ~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~-~~q 236 (338)
T PRK08192 158 DGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT-RIQ 236 (338)
T ss_pred CCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc-Ccc
Confidence 56899999994 7788888877766664 555443211 1122211 112 1 46899999999995 335
Q ss_pred c
Q psy13395 217 H 217 (224)
Q Consensus 217 ~ 217 (224)
.
T Consensus 237 ~ 237 (338)
T PRK08192 237 E 237 (338)
T ss_pred c
Confidence 3
No 339
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=40.07 E-value=62 Score=29.03 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=42.3
Q ss_pred cEEEEEec-CHhHHHHHHHHHHhCCc---EEEeCCcch-----HHhhhh-ccCCCc-----ccccccCcEEEEecccc
Q psy13395 154 LVLAIMGS-GAQAYIHAKAFHASLKL---KKYNRGLTE-----GTVTGS-TKKGMA-----TEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 154 ~~l~iiGa-G~QA~~hl~a~~~v~~i---~v~~R~~~~-----a~~~a~-~~~g~~-----~~~v~~advvv~~~~~~ 216 (224)
-+++|.|+ |.+++.-++++..--.. -.+.|.... +..++. ...|+. .....++||||.-|...
T Consensus 3 iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P~ 80 (266)
T COG0289 3 IKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTPE 80 (266)
T ss_pred ceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCCch
Confidence 47999999 99999999998876543 556666542 222322 223442 34456899999988764
No 340
>KOG2666|consensus
Probab=39.93 E-value=19 Score=33.65 Aligned_cols=62 Identities=11% Similarity=0.147 Sum_probs=47.3
Q ss_pred cEEEEEecCHhHHHHHHHHHHhCC-c--EEEeCCcchHHhhhhccC-----CC-----------------cccccccCcE
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASLK-L--KKYNRGLTEGTVTGSTKK-----GM-----------------ATEDVITAKL 208 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~~-i--~v~~R~~~~a~~~a~~~~-----g~-----------------~~~~v~~adv 208 (224)
..+..||+|-.+--....+..-+| | .+.+.+..+..++-+..+ |+ -..+|.+||+
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadl 81 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADL 81 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcce
Confidence 357899999999888777777788 4 888888888877776432 22 4788999999
Q ss_pred EEEeccc
Q psy13395 209 IYDKYQA 215 (224)
Q Consensus 209 vv~~~~~ 215 (224)
|+-+-..
T Consensus 82 vfisvnt 88 (481)
T KOG2666|consen 82 VFISVNT 88 (481)
T ss_pred EEEEecC
Confidence 9976543
No 341
>PRK08017 oxidoreductase; Provisional
Probab=39.90 E-value=55 Score=27.33 Aligned_cols=39 Identities=10% Similarity=-0.011 Sum_probs=28.7
Q ss_pred cEEEEEec-CHhHHHHHHHHHHhC-CcEEEeCCcchHHhhh
Q psy13395 154 LVLAIMGS-GAQAYIHAKAFHASL-KLKKYNRGLTEGTVTG 192 (224)
Q Consensus 154 ~~l~iiGa-G~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a 192 (224)
++++|+|+ |.+|+..++.+...- .+.+.+|++++.+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN 43 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH
Confidence 46888988 999999998887643 2377788887765443
No 342
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.49 E-value=40 Score=30.65 Aligned_cols=54 Identities=6% Similarity=0.001 Sum_probs=34.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC----C--c-EEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL----K--L-KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~----~--i-~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
.-++++|||-+..=-.=+..++.-. + + .+.+++++ ..+.+++|||||++++..+
T Consensus 160 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T~~------------l~~~~~~ADIvVsAvGkp~ 220 (297)
T PRK14168 160 SGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRSKN------------LARHCQRADILIVAAGVPN 220 (297)
T ss_pred CCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCCcC------------HHHHHhhCCEEEEecCCcC
Confidence 5789999998765544444444433 2 3 33344432 3456789999999988654
No 343
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.28 E-value=97 Score=29.54 Aligned_cols=64 Identities=8% Similarity=-0.019 Sum_probs=40.1
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcch--HHhhhhcc------CC-CcccccccCcEEEEeccccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTE--GTVTGSTK------KG-MATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~--a~~~a~~~------~g-~~~~~v~~advvv~~~~~~~ 217 (224)
.+++.|+|.|.-|..-++.+.. ... .+++..... .+.|.+.. .| ..++.+.++|+||.+.+-..
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~-~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~ 81 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCAR-HGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSP 81 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHH-CCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCC
Confidence 4679999999999985565554 443 777754422 22332211 12 24455678999999876544
No 344
>PRK00811 spermidine synthase; Provisional
Probab=38.95 E-value=67 Score=28.50 Aligned_cols=77 Identities=9% Similarity=0.073 Sum_probs=45.3
Q ss_pred EEEEEEEeCCCCcEEEEEeCccchhhhhhhh-h-HHh-hhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCC---cEE
Q psy13395 107 LATVLLYNTDNGKLKVVMEGTEITKWRTAAA-S-VVA-TKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLK---LKK 180 (224)
Q Consensus 107 ~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~-S-ala-a~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~---i~v 180 (224)
..-|.+++.....-.-++||..-+.-|-.-. . .++ .-+++.+ +++++++||+|.=+- ++.++...+ +.+
T Consensus 31 yq~i~v~~~~~~g~~l~lDg~~q~~~~de~~Y~e~l~h~~~~~~~---~p~~VL~iG~G~G~~--~~~~l~~~~~~~V~~ 105 (283)
T PRK00811 31 FQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHP---NPKRVLIIGGGDGGT--LREVLKHPSVEKITL 105 (283)
T ss_pred CeeEEEEEcCCccEEEEECCeeeecCcchhhHHHHhhhHHHhhCC---CCCEEEEEecCchHH--HHHHHcCCCCCEEEE
Confidence 4677888887756777889988776553211 0 111 1234456 789999999986222 222222223 367
Q ss_pred EeCCcchH
Q psy13395 181 YNRGLTEG 188 (224)
Q Consensus 181 ~~R~~~~a 188 (224)
+..+++-.
T Consensus 106 VEid~~vv 113 (283)
T PRK00811 106 VEIDERVV 113 (283)
T ss_pred EeCCHHHH
Confidence 77777654
No 345
>PLN02852 ferredoxin-NADP+ reductase
Probab=38.89 E-value=45 Score=32.30 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHH
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHA 174 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~ 174 (224)
..++|+|||+|+-|.+-.+.+..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~ 47 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLK 47 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHh
Confidence 57899999999999999998875
No 346
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.73 E-value=55 Score=29.65 Aligned_cols=54 Identities=9% Similarity=0.003 Sum_probs=35.9
Q ss_pred CCcEEEEEecCH-hHHHHHHHHHHhCC-cEEEe-CCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGA-QAYIHAKAFHASLK-LKKYN-RGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~-QA~~hl~a~~~v~~-i~v~~-R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||-+. .|+-....|..-.- +.+.+ ++++ ..+-+++|||||++.+-.+
T Consensus 163 ~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~------------l~~~~~~ADIvv~AvG~p~ 219 (287)
T PRK14176 163 EGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDD------------LKKYTLDADILVVATGVKH 219 (287)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCC------------HHHHHhhCCEEEEccCCcc
Confidence 679999999999 77766666654322 34443 3321 3445788999999887654
No 347
>KOG0024|consensus
Probab=38.52 E-value=84 Score=29.29 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=39.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcch---HHhhhhcc-CCC-----------ccccc---ccCcEEEE
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTE---GTVTGSTK-KGM-----------ATEDV---ITAKLIYD 211 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~---a~~~a~~~-~g~-----------~~~~v---~~advvv~ 211 (224)
--.+++|+|+|++|...+....+.-- |.+.+-.+++ |+.|.-+. ... ..+.. ...|++|.
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~d 248 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFD 248 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEE
Confidence 57899999999999999888776543 2444444333 33443210 000 01111 13899999
Q ss_pred eccccc
Q psy13395 212 KYQAQH 217 (224)
Q Consensus 212 ~~~~~~ 217 (224)
.+++|-
T Consensus 249 CsG~~~ 254 (354)
T KOG0024|consen 249 CSGAEV 254 (354)
T ss_pred ccCchH
Confidence 888874
No 348
>PF12134 PRP8_domainIV: PRP8 domain IV core; InterPro: IPR021983 This domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with PF10597 from PFAM, PF10596 from PFAM, PF10598 from PFAM, PF08083 from PFAM, PF08082 from PFAM, PF01398 from PFAM, PF08084 from PFAM. There is a conserved LILR sequence motif. The domain is a selenomethionine domain in a subunit of the spliceosome. The function of PRP8 domain IV is believed to be interaction with the splicosomal core. ; PDB: 3E66_A 3E9P_A 3SBT_A 3E9O_A 3SBG_A 3LRU_A 3E9L_A 3ENB_A.
Probab=38.42 E-value=21 Score=31.26 Aligned_cols=93 Identities=12% Similarity=0.295 Sum_probs=57.3
Q ss_pred CCeEEEEEEeecCCCCCCCCCceEEEEEEEeCCCCcEEEEE-eC---------ccchhhhhhhhhHHhhhhhccCCCCCC
Q psy13395 84 EDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVM-EG---------TEITKWRTAAASVVATKHLFGRSGDKD 153 (224)
Q Consensus 84 ~~~~GvK~vs~~p~N~~~glP~~~g~i~L~D~~TG~p~All-Dg---------~~lT~~RTaA~Salaa~~Lar~~~~~~ 153 (224)
.+.+-|.+.-.+-+|..- -.++|.+.+|+|.||++.--+ .. ..+..|+||=--+--.+.|-++ +.+
T Consensus 24 tnvYrvt~h~t~eGn~~t--kpiNG~ifIfnP~TGqLflKiihtsvwaGQKRl~qlakwKtAEEv~alirslP~e--EqP 99 (231)
T PF12134_consen 24 TNVYRVTIHKTFEGNLTT--KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLSQLAKWKTAEEVAALIRSLPKE--EQP 99 (231)
T ss_dssp TTSSEEEEEE-TTS-EEE--EEE-EEEEEE-TTT-EEEEEEE-GGGGCC-SSHHHHHHHHHHHHHHHHHHHS-CC--CSG
T ss_pred CceEEEEEEeeccCCcee--ccccceEEEEeCCCCcEEEEEEeehhccchhHHHHHHHHhhHHHHHHHHHhCCHh--hCC
Confidence 467788888778887532 258999999999999987653 22 2467788876554445666433 268
Q ss_pred cEEEEEecCHhHHHHHHHHHHhCC-cEEEe
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASLK-LKKYN 182 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~ 182 (224)
+.+.|-=-|.+=-.|... --+| |.|..
T Consensus 100 kqiIVtrk~m~dple~~l--ldfPnI~I~~ 127 (231)
T PF12134_consen 100 KQIIVTRKGMLDPLEVHL--LDFPNISIKG 127 (231)
T ss_dssp SEEEECSGGCHHHHHHHT--TTTTTCEEEE
T ss_pred ceEEEecHHHhhHHHHHh--hhCCCeeEec
Confidence 888887777766555544 3455 35543
No 349
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.38 E-value=87 Score=29.54 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=41.0
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchH-----HhhhhccCCC-------cccccccCcEEEEeccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEG-----TVTGSTKKGM-------ATEDVITAKLIYDKYQA 215 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a-----~~~a~~~~g~-------~~~~v~~advvv~~~~~ 215 (224)
.++++|+|.|.-|..-++.+...-- +.++++++... +.+.+ .|+ ..+.+.+.|+||.+.+-
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~--~gi~~~~~~~~~~~~~~~dlVV~Spgi 87 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKE--LGVKLVLGENYLDKLDGFDVIFKTPSM 87 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHh--CCCEEEeCCCChHHhccCCEEEECCCC
Confidence 5689999999999988877766542 38888765321 22322 232 24557789999988654
No 350
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=38.28 E-value=74 Score=24.50 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=23.6
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhC--CcEEEeC
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASL--KLKKYNR 183 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R 183 (224)
..+++|+|+|..|-.-++.+...- .+.+++.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDD 34 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence 368999999999999999988763 2355553
No 351
>PRK07060 short chain dehydrogenase; Provisional
Probab=37.85 E-value=67 Score=26.50 Aligned_cols=42 Identities=10% Similarity=-0.017 Sum_probs=32.2
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhh
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGS 193 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~ 193 (224)
+.++++|+|+ |..|+..++.+...-. +.+.+|++++.+.+.+
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 51 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG 51 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4578899997 7999999998876432 4778898888776654
No 352
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.75 E-value=1.1e+02 Score=28.65 Aligned_cols=65 Identities=9% Similarity=-0.030 Sum_probs=40.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcch--HHhhhhccCC-------CcccccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTE--GTVTGSTKKG-------MATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~--a~~~a~~~~g-------~~~~~v~~advvv~~~~~~ 216 (224)
....++|+|.|..|..-++.+...-- +.+++..... .+.|.+...| ...+.+.++|+||.+.+-.
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~ 79 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLA 79 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCC
Confidence 35689999999999996666555322 3777765432 2234321113 2445577899999887643
No 353
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=37.75 E-value=71 Score=28.88 Aligned_cols=61 Identities=16% Similarity=0.111 Sum_probs=40.1
Q ss_pred CCcEEEEEecC---HhHHHHHHHHHHhCCc--EEEeCCcc-hHHhhhh--ccCCC-------cccccccCcEEEEec
Q psy13395 152 KDLVLAIMGSG---AQAYIHAKAFHASLKL--KKYNRGLT-EGTVTGS--TKKGM-------ATEDVITAKLIYDKY 213 (224)
Q Consensus 152 ~~~~l~iiGaG---~QA~~hl~a~~~v~~i--~v~~R~~~-~a~~~a~--~~~g~-------~~~~v~~advvv~~~ 213 (224)
+..+|+++|-| ..++..+.++.. ++. ++..+..- .-+.+.+ +..|. ..+++.+||||++..
T Consensus 149 ~g~~va~vGD~~~~~v~~Sl~~~~a~-~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~ 224 (301)
T TIGR00670 149 DGLKIALVGDLKYGRTVHSLAEALTR-FGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTR 224 (301)
T ss_pred CCCEEEEEccCCCCcHHHHHHHHHHH-cCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECC
Confidence 67899999995 889999998765 565 55554321 1122222 11232 578899999999954
No 354
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=37.65 E-value=71 Score=29.43 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=37.8
Q ss_pred CCcEEEEEecC--HhHHHHHHHHHHhCCc--EEEeCCcc--------hHHhhhhccCC--C-----cccccccCcEEEEe
Q psy13395 152 KDLVLAIMGSG--AQAYIHAKAFHASLKL--KKYNRGLT--------EGTVTGSTKKG--M-----ATEDVITAKLIYDK 212 (224)
Q Consensus 152 ~~~~l~iiGaG--~QA~~hl~a~~~v~~i--~v~~R~~~--------~a~~~a~~~~g--~-----~~~~v~~advvv~~ 212 (224)
+..+++++|-+ ..++..+.++.. ++. ++..+..- .++.+++. .| + ..+++.+||||++.
T Consensus 155 ~g~~ia~vGD~~~~v~~Sl~~~~~~-~g~~v~~~~P~~~~~~~~~~~~~~~~~~~-~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 155 NEMTLAYAGDARNNMGNSLLEAAAL-TGLDLRLVAPKACWPEAALVTECRALAQK-NGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CCCEEEEeCCCcCcHHHHHHHHHHH-cCCEEEEECCchhcCcHHHHHHHHHHHHH-cCCeEEEEcCHHHHhCCCCEEEec
Confidence 56899999986 568888887654 565 55544321 12233322 13 2 57889999999996
No 355
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=37.56 E-value=43 Score=26.66 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=22.8
Q ss_pred EEEecCHhHHHHHHHHHHhC----C--cEEEeCCcc
Q psy13395 157 AIMGSGAQAYIHAKAFHASL----K--LKKYNRGLT 186 (224)
Q Consensus 157 ~iiGaG~QA~~hl~a~~~v~----~--i~v~~R~~~ 186 (224)
+|||.|+-|-+-++.|.... + |.||++++-
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 58899999988888888874 2 288877544
No 356
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.14 E-value=1.1e+02 Score=28.53 Aligned_cols=63 Identities=11% Similarity=0.118 Sum_probs=39.1
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhh--ccCCC------ccccc-cc-CcEEEEeccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGS--TKKGM------ATEDV-IT-AKLIYDKYQA 215 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~--~~~g~------~~~~v-~~-advvv~~~~~ 215 (224)
.+++.|+|.|..|..-.+.+...-- +.+++++.+......+ +..|+ ...++ .. .|+||.+.+-
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi 78 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGI 78 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCC
Confidence 4689999999999998888776543 3777776543222211 11232 22233 33 8999988754
No 357
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=36.75 E-value=50 Score=28.05 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=39.9
Q ss_pred EEEEe-cCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc-c---CC-CcccccccCcEEEEeccc
Q psy13395 156 LAIMG-SGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST-K---KG-MATEDVITAKLIYDKYQA 215 (224)
Q Consensus 156 l~iiG-aG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~-~---~g-~~~~~v~~advvv~~~~~ 215 (224)
++|.| +|.+|.+.++.+... +.+++.+|++++...+... . .+ ...+++.+.|+||-..+.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~~ 67 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAGE 67 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCCC
Confidence 35676 699999999998874 3458888888765443211 0 11 134566789999976654
No 358
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.62 E-value=73 Score=28.77 Aligned_cols=54 Identities=6% Similarity=-0.033 Sum_probs=33.9
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
.-++++|||-+..=-.=+..++.-+.- .+.++++. ..+-+++|||||++.+..+
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~d------------l~~~~k~ADIvIsAvGkp~ 213 (282)
T PRK14180 157 EGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTD------------LKSHTTKADILIVAVGKPN 213 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCC------------HHHHhhhcCEEEEccCCcC
Confidence 578999999876544444444444442 34444431 2233788999999988654
No 359
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.46 E-value=95 Score=29.15 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=39.0
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCC-----cccccccCcEEEEeccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQA 215 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~ 215 (224)
.+++.|+|.|.-+..-++.+...-- +.++++.+.....+.+ .|+ ..+.+.+.|+||-+-+-
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~--~g~~~~~~~~~~~~~~d~vv~sp~i 75 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAA--AGITTADLRTADWSGFAALVLSPGV 75 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHh--cCccccCCChhHHcCCCEEEECCCC
Confidence 3579999999999987666655432 3777766443333322 243 23446689999976543
No 360
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=36.41 E-value=62 Score=26.06 Aligned_cols=35 Identities=23% Similarity=0.187 Sum_probs=24.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLT 186 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~ 186 (224)
..++|+|||.|.-|..-+..+...-. +.++.|++-
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 46899999999999888877777654 488878763
No 361
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.30 E-value=61 Score=29.26 Aligned_cols=54 Identities=6% Similarity=-0.055 Sum_probs=35.3
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEE-eCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKY-NRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~-~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||-+..=-.=+..++.-++- .+. +++. -..+.+++|||||++++..+
T Consensus 157 ~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~------------~l~~~~~~ADIvI~AvG~p~ 213 (284)
T PRK14190 157 SGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTK------------NLAELTKQADILIVAVGKPK 213 (284)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCch------------hHHHHHHhCCEEEEecCCCC
Confidence 678999999876655555555544543 333 3331 13456889999999998765
No 362
>KOG1399|consensus
Probab=36.25 E-value=47 Score=31.88 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=21.9
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS 175 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v 175 (224)
.+++++|||+|+-|...++.+.+-
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~ 28 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLRE 28 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHC
Confidence 478999999999999999998876
No 363
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=35.98 E-value=1.1e+02 Score=27.22 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=41.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh-----C-------CcEEEeCC------cc----hHHhhhhccC-----CCcccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS-----L-------KLKKYNRG------LT----EGTVTGSTKK-----GMATEDVI 204 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v-----~-------~i~v~~R~------~~----~a~~~a~~~~-----g~~~~~v~ 204 (224)
...+++++|+|.-+..-.+.+... . .|.++++. .+ .-+.|++... +-..++|.
T Consensus 24 ~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~ 103 (255)
T PF03949_consen 24 SDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVK 103 (255)
T ss_dssp GG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHH
T ss_pred HHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcccccccCHHHHHH
Confidence 478999999999998888888777 2 23444433 12 2355565322 24788899
Q ss_pred cC--cEEEEecc
Q psy13395 205 TA--KLIYDKYQ 214 (224)
Q Consensus 205 ~a--dvvv~~~~ 214 (224)
++ ||+|...+
T Consensus 104 ~~kPtvLIG~S~ 115 (255)
T PF03949_consen 104 GAKPTVLIGLSG 115 (255)
T ss_dssp CH--SEEEECSS
T ss_pred hcCCCEEEEecC
Confidence 99 99998874
No 364
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=35.13 E-value=72 Score=24.63 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=15.3
Q ss_pred EEEEEe-cCHhHHHHHHHHHHhCC--cEEEeCC
Q psy13395 155 VLAIMG-SGAQAYIHAKAFHASLK--LKKYNRG 184 (224)
Q Consensus 155 ~l~iiG-aG~QA~~hl~a~~~v~~--i~v~~R~ 184 (224)
+++|+| +|..|+.-.+.+..--. +.+.+|+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~ 34 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRS 34 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeec
Confidence 445555 45555555555555411 2555555
No 365
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.01 E-value=56 Score=29.59 Aligned_cols=54 Identities=17% Similarity=0.071 Sum_probs=34.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC----C--cEEE-eCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL----K--LKKY-NRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~----~--i~v~-~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
.-++++|||-+..=-.=+..++.-+ + +.+. +++++ ..+-+++|||||++.+-.+
T Consensus 152 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T~~------------l~~~~~~ADIvV~AvG~p~ 212 (287)
T PRK14181 152 HGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQSEN------------LTEILKTADIIIAAIGVPL 212 (287)
T ss_pred CCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCCCC------------HHHHHhhCCEEEEccCCcC
Confidence 6789999998765544444444444 3 2333 33321 3455788999999988654
No 366
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=35.00 E-value=60 Score=31.08 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=40.1
Q ss_pred CCcEEEEEecC---HhHHHHHHHHHHhCCc--EEEeCCc-chHHhhhhc--cCC--C-----cccccccCcEEEEec
Q psy13395 152 KDLVLAIMGSG---AQAYIHAKAFHASLKL--KKYNRGL-TEGTVTGST--KKG--M-----ATEDVITAKLIYDKY 213 (224)
Q Consensus 152 ~~~~l~iiGaG---~QA~~hl~a~~~v~~i--~v~~R~~-~~a~~~a~~--~~g--~-----~~~~v~~advvv~~~ 213 (224)
+..+++++|.+ ..++..+.++....+. .+..+.. +.-+.+.+. ..| + ..+++.+||||++..
T Consensus 240 ~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~ 316 (429)
T PRK11891 240 DGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATR 316 (429)
T ss_pred CCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 46899999995 8899988887665454 5555432 111222211 113 1 578999999999944
No 367
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=34.86 E-value=50 Score=29.72 Aligned_cols=39 Identities=10% Similarity=0.084 Sum_probs=32.4
Q ss_pred EEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhh
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGS 193 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~ 193 (224)
.+++||.|.++....+-+..--. +..|+++++..+++++
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~ 41 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD 41 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHh
Confidence 57999999999998887766443 4999999998888876
No 368
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=34.77 E-value=75 Score=24.21 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=15.7
Q ss_pred EEEEEecCHhHHHHHHHHHHhC
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL 176 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~ 176 (224)
+++|||.| ||.|.-+..-.+
T Consensus 2 kVLviGsG--gREHAia~~l~~ 21 (100)
T PF02844_consen 2 KVLVIGSG--GREHAIAWKLSQ 21 (100)
T ss_dssp EEEEEESS--HHHHHHHHHHTT
T ss_pred EEEEECCC--HHHHHHHHHHhc
Confidence 68999999 788877766554
No 369
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=34.73 E-value=57 Score=28.54 Aligned_cols=35 Identities=9% Similarity=0.107 Sum_probs=26.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLT 186 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~ 186 (224)
...+|.|||+|..|+.-.+....+ |.+.|++..++
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 367999999999999988876654 23378876655
No 370
>KOG0172|consensus
Probab=34.65 E-value=31 Score=32.83 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=47.2
Q ss_pred cEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhc------cCCC------cccccccCcEEEEec
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGST------KKGM------ATEDVITAKLIYDKY 213 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~------~~g~------~~~~v~~advvv~~~ 213 (224)
+.|+++|+|.+++--+..+.+--.+ .|-+|+...+++|+.. ...+ ....+.+=|+|++=+
T Consensus 3 ~~vlllgsg~v~~p~~d~ls~~~dv~vtva~~~~~~~~~~~~~~~~~av~ldv~~~~~~L~~~v~~~D~viSLl 76 (445)
T KOG0172|consen 3 KGVLLLGSGFVSRPVADFLSRKKDVNVTVASRTLKDAEALVKGINIKAVSLDVADEELALRKEVKPLDLVISLL 76 (445)
T ss_pred cceEEecCccccchHHHHHhhcCCceEEEehhhHHHHHHHhcCCCccceEEEccchHHHHHhhhcccceeeeec
Confidence 5799999999999999998877666 9999999999999972 1222 345567778887654
No 371
>PRK06940 short chain dehydrogenase; Provisional
Probab=34.58 E-value=58 Score=28.10 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=26.0
Q ss_pred cEEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhh
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTG 192 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a 192 (224)
++++|.|+|..|+...+.+..-..+.+.+|+.++.+.+.
T Consensus 3 k~~lItGa~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~ 41 (275)
T PRK06940 3 EVVVVIGAGGIGQAIARRVGAGKKVLLADYNEENLEAAA 41 (275)
T ss_pred CEEEEECCChHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 467788888888888888742222366677776665544
No 372
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=34.57 E-value=92 Score=28.66 Aligned_cols=60 Identities=23% Similarity=0.187 Sum_probs=37.9
Q ss_pred CCcEEEEEecC--HhHHHHHHHHHHhCCc--EEEeCCcch--------HHhhhhccCCC-------cccccccCcEEEEe
Q psy13395 152 KDLVLAIMGSG--AQAYIHAKAFHASLKL--KKYNRGLTE--------GTVTGSTKKGM-------ATEDVITAKLIYDK 212 (224)
Q Consensus 152 ~~~~l~iiGaG--~QA~~hl~a~~~v~~i--~v~~R~~~~--------a~~~a~~~~g~-------~~~~v~~advvv~~ 212 (224)
+..+|+++|-+ ..++..+.++.. ++. ++..+..-. ++.+++. .|. ..+++.+||||++.
T Consensus 154 ~g~~va~vGd~~~~v~~Sl~~~~~~-~g~~v~~~~P~~~~~~~~~~~~~~~~~~~-~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 154 KGLKLAYVGDGRNNMANSLMVGGAK-LGMDVRICAPKELWPEEELVALAREIAKE-TGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHH-cCCEEEEECCcccccCHHHHHHHHHHHHH-cCCeEEEEcCHHHHhCCCCEEEEc
Confidence 67899999997 678887877554 454 444432211 1222222 232 46889999999996
Q ss_pred c
Q psy13395 213 Y 213 (224)
Q Consensus 213 ~ 213 (224)
.
T Consensus 232 ~ 232 (331)
T PRK02102 232 V 232 (331)
T ss_pred C
Confidence 4
No 373
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=34.52 E-value=67 Score=29.52 Aligned_cols=64 Identities=11% Similarity=0.122 Sum_probs=39.8
Q ss_pred CcEEEEEec-CHhHHHHHHHHHHh-CCc--EEEeCCcchHHh---hhhcc---CCCcccccccCcEEEEecccc
Q psy13395 153 DLVLAIMGS-GAQAYIHAKAFHAS-LKL--KKYNRGLTEGTV---TGSTK---KGMATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 153 ~~~l~iiGa-G~QA~~hl~a~~~v-~~i--~v~~R~~~~a~~---~a~~~---~g~~~~~v~~advvv~~~~~~ 216 (224)
..+++|+|+ |..|+.-++.+... +|. ..+-++.+++.+ |.... .....+++.+.|+|+.++...
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~~~~vD~vFla~p~~ 77 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFDFSQVQLAFFAAGAA 77 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHHhcCCCEEEEcCCHH
Confidence 368999996 99999999999853 564 222233333321 22211 122344567899999998743
No 374
>KOG3124|consensus
Probab=34.30 E-value=42 Score=30.07 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=40.7
Q ss_pred EEEEEecCHhHHHHHHHHHHhCCc---EEEeCCc-chHHhhhhccCCC-----cccccccCcEEEEeccccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASLKL---KKYNRGL-TEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~-~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~~ 217 (224)
.+++||+|.+|....+.+...--+ ++|.-.+ ++...+--+..|+ ..+.+..+|+++-++..|+
T Consensus 2 ~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svKp~~ 73 (267)
T KOG3124|consen 2 KVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVKPQV 73 (267)
T ss_pred ceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeecchh
Confidence 479999999999877776654322 6665554 2222221122233 4677779999999888765
No 375
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=34.26 E-value=98 Score=28.72 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.2
Q ss_pred cEEEEEecCHhHHHHHHHHHHhC-Cc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASL-KL 178 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~-~i 178 (224)
-+|+|=|-|.+||.-++++...- .+
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~di 27 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDI 27 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCe
Confidence 47899999999999999999977 46
No 376
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=34.20 E-value=52 Score=28.30 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=27.4
Q ss_pred EEEEEec-CHhHHHHHHHHHHh-CCcEEEeCCcchHH
Q psy13395 155 VLAIMGS-GAQAYIHAKAFHAS-LKLKKYNRGLTEGT 189 (224)
Q Consensus 155 ~l~iiGa-G~QA~~hl~a~~~v-~~i~v~~R~~~~a~ 189 (224)
+++|+|+ |.+|+.-++.+... .++++..|++++++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~ 37 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA 37 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc
Confidence 3678887 99999999998764 34588999987653
No 377
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=34.16 E-value=1.3e+02 Score=26.02 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=38.8
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-C-cEEEeCCcchHHhhhhccCCC--------ccccc------ccCcEEEEeccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-K-LKKYNRGLTEGTVTGSTKKGM--------ATEDV------ITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~-i~v~~R~~~~a~~~a~~~~g~--------~~~~v------~~advvv~~~~~ 215 (224)
...+++|+|+|..+...++.+...- . +.+.++++++.+. +++ .|. ..+.+ ..+|+||.+++.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~-a~~-~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~ 197 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRREL-ALS-FGATALAEPEVLAERQGGLQNGRGVDVALEFSGA 197 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH-HHH-cCCcEecCchhhHHHHHHHhCCCCCCEEEECCCC
Confidence 4678999999999999888765532 1 3444677666543 221 111 11111 258999998875
Q ss_pred c
Q psy13395 216 Q 216 (224)
Q Consensus 216 ~ 216 (224)
.
T Consensus 198 ~ 198 (280)
T TIGR03366 198 T 198 (280)
T ss_pred h
Confidence 4
No 378
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=33.83 E-value=1.1e+02 Score=28.89 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=37.8
Q ss_pred CCcEEEEEec-----C---HhHHHHHHHHHHhCCc--EEEeCCc----ch----HHhhhhccCC-C-----cccccccCc
Q psy13395 152 KDLVLAIMGS-----G---AQAYIHAKAFHASLKL--KKYNRGL----TE----GTVTGSTKKG-M-----ATEDVITAK 207 (224)
Q Consensus 152 ~~~~l~iiGa-----G---~QA~~hl~a~~~v~~i--~v~~R~~----~~----a~~~a~~~~g-~-----~~~~v~~ad 207 (224)
+..+|+|+|. | ..++..+.++.. ++. ++.++.. .. ++.+++...+ + ..+++.+||
T Consensus 186 ~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~-lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~aD 264 (395)
T PRK07200 186 KGKKIAMTWAYSPSYGKPLSVPQGIIGLMTR-FGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDAD 264 (395)
T ss_pred CCCEEEEEeccccccCCcchHHHHHHHHHHH-cCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCC
Confidence 3458999987 5 567888887654 454 6666542 11 1222332111 1 578999999
Q ss_pred EEEEec
Q psy13395 208 LIYDKY 213 (224)
Q Consensus 208 vvv~~~ 213 (224)
||++.+
T Consensus 265 vVYtd~ 270 (395)
T PRK07200 265 IVYPKS 270 (395)
T ss_pred EEEEcC
Confidence 999984
No 379
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=33.53 E-value=80 Score=24.14 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=33.4
Q ss_pred cEEEEEec----CHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 154 LVLAIMGS----GAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 154 ~~l~iiGa----G~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
++++|||+ +.-|+..++.+.. ....||--++...+.+.........+.-...|+++-.+.+++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~-~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~ 67 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKA-AGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDK 67 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHH-TT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHh-CCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHH
Confidence 57999994 5558888888888 444444444444333332222223332367788887776654
No 380
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=33.45 E-value=1.1e+02 Score=28.61 Aligned_cols=59 Identities=10% Similarity=0.003 Sum_probs=35.5
Q ss_pred CcEEEEEecC--------HhHHHHHHHHHHhCCc--EEEeCCc--------chHHhhhhccCCC-------cccccccCc
Q psy13395 153 DLVLAIMGSG--------AQAYIHAKAFHASLKL--KKYNRGL--------TEGTVTGSTKKGM-------ATEDVITAK 207 (224)
Q Consensus 153 ~~~l~iiGaG--------~QA~~hl~a~~~v~~i--~v~~R~~--------~~a~~~a~~~~g~-------~~~~v~~ad 207 (224)
..+++|+|.| ..+...+.++.. ++. .+.++.. +.++.+++. .|. ..+++.+||
T Consensus 170 g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~-~G~~v~~~~P~~~~~~~~~~~~a~~~~~~-~g~~~~~~~d~~ea~~~aD 247 (357)
T TIGR03316 170 GKKFAMTWAYSPSYGKPLSVPQGIIGLMTR-FGMDVTLAHPEGYHLLPEVIEVAKKNAAE-NGGKFNIVNSMDEAFKDAD 247 (357)
T ss_pred CCEEEEEeccccccCccchHHHHHHHHHHH-cCCEEEEECCCcccCCHHHHHHHHHHHHH-cCCeEEEEcCHHHHhCCCC
Confidence 4689999864 445666666544 555 5555431 112223332 232 578899999
Q ss_pred EEEEec
Q psy13395 208 LIYDKY 213 (224)
Q Consensus 208 vvv~~~ 213 (224)
||++.+
T Consensus 248 vvyt~~ 253 (357)
T TIGR03316 248 IVYPKS 253 (357)
T ss_pred EEEECC
Confidence 999985
No 381
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=33.13 E-value=34 Score=30.49 Aligned_cols=67 Identities=13% Similarity=0.057 Sum_probs=47.7
Q ss_pred EeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCC-c---------EEEe-CCcchHHhhh
Q psy13395 124 MEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLK-L---------KKYN-RGLTEGTVTG 192 (224)
Q Consensus 124 lDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~-i---------~v~~-R~~~~a~~~a 192 (224)
-||--+|++||+-..=+.--.++++ ....-+++|+|.--+.-.+.+...-. | ..|| -+++++.+|.
T Consensus 178 aDaVI~tG~~TG~~~d~~el~~a~~---~~~~pvlvGSGv~~eN~~~~l~~adG~IvgT~lK~~G~~~n~VD~~Rv~~~v 254 (263)
T COG0434 178 ADAVIVTGSRTGSPPDLEELKLAKE---AVDTPVLVGSGVNPENIEELLKIADGVIVGTSLKKGGVTWNPVDLERVRRFV 254 (263)
T ss_pred CCEEEEecccCCCCCCHHHHHHHHh---ccCCCEEEecCCCHHHHHHHHHHcCceEEEEEEccCCEecCccCHHHHHHHH
Confidence 3788899999998776654445555 56688999999987766665555443 2 5665 4677888887
Q ss_pred h
Q psy13395 193 S 193 (224)
Q Consensus 193 ~ 193 (224)
+
T Consensus 255 ~ 255 (263)
T COG0434 255 E 255 (263)
T ss_pred H
Confidence 7
No 382
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=31.74 E-value=72 Score=27.56 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=25.2
Q ss_pred EEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcch
Q psy13395 155 VLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTE 187 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~ 187 (224)
.|+|||+|+-|.....+|... .++.|+.|.+..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 589999999999999998886 345888877654
No 383
>PF00905 Transpeptidase: Penicillin binding protein transpeptidase domain; InterPro: IPR001460 This signature identifies a large group of proteins, which include: Beta-lactamase precursor (3.5.2.6 from EC, penicillinase) Peptidoglycan synthetase ftsI (2.4.1.129 from EC, peptidoglycan glycosyltransferase 3) Methicillin resistance mecR1 protein Methicillin resistance blaR1 protein The large number of penicillin binding proteins, which are represented in this group of sequences, are responsible for the final stages of peptidoglycan biosynthesis for cell wall formation. The proteins synthesise cross-linked peptidoglycan from lipid intermediates, and contain a penicillin-sensitive transpeptidase carboxy-terminal domain. The active site serine (residue 337 in P14677 from SWISSPROT) is conserved in all members of this family []. MecR1 and BlaR1 are metallopeptidases belonging to MEROPS peptidase family M56, clan M-. BlaR1 and MecR1 cleave their cognate transcriptional repressors BlaI and MecI, respectively, activating the synthesis of MecA. MecR1 is present in Staphylococcus aureus and Staphylococcus sciuri, whereas BlaR1 (also known as BlaR, PenR1, or PenJ) has been found in Bacillus licheniformis, Staphylococcus epidermidis, Staphylococcus haemolyticus, and several S. aureus strains. These proteins are either plasmid-encoded, chromosomal, or transposon-mediated. MecR1/BlaR1 proteins are made up by homologous N-terminal 330-residue transmembrane metallopeptidase domains linked to extracellular 260-residue homologous PBP-like penicillin sensor moieties. ; GO: 0008658 penicillin binding, 0009273 peptidoglycan-based cell wall biogenesis; PDB: 3FWL_A 3VMA_A 2Z2M_E 2Z2L_E 1QME_A 1RP5_B 2ZC4_E 2ZC3_E 1QMF_A 3HBR_A ....
Probab=31.32 E-value=53 Score=28.93 Aligned_cols=20 Identities=15% Similarity=0.483 Sum_probs=18.1
Q ss_pred EEEEEEeCCCCcEEEEEeCc
Q psy13395 108 ATVLLYNTDNGKLKVVMEGT 127 (224)
Q Consensus 108 g~i~L~D~~TG~p~AllDg~ 127 (224)
|.++++|+.||+.+|+..+.
T Consensus 1 GavVv~d~~TG~IlA~~~~~ 20 (304)
T PF00905_consen 1 GAVVVMDPKTGEILAMVGGP 20 (304)
T ss_dssp EEEEEEETTTTBEEEEEEES
T ss_pred CEEEEEECCCCcEEEEEeCC
Confidence 67899999999999999766
No 384
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=31.10 E-value=93 Score=28.03 Aligned_cols=32 Identities=16% Similarity=0.043 Sum_probs=24.3
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeC
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNR 183 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R 183 (224)
...+|+|+|+|..|-..++.+...-- +.+++.
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~ 51 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDT 51 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 46789999999999999998866532 355553
No 385
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.99 E-value=79 Score=23.18 Aligned_cols=56 Identities=13% Similarity=-0.002 Sum_probs=33.7
Q ss_pred EEEEEecCHhHHHHHHHHHHhCCc-EEEe-CCcchHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASLKL-KKYN-RGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA 215 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~~i-~v~~-R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~ 215 (224)
+++|||.=..=..+++.+..-++. .+|- |.... . ......++.|.+||+||.-|..
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~----~-~~~~~l~~~i~~aD~VIv~t~~ 58 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGD----E-KKASRLPSKIKKADLVIVFTDY 58 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCC----c-cchhHHHHhcCCCCEEEEEeCC
Confidence 478888844445566777777776 3333 22211 1 1112256788899999988865
No 386
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.93 E-value=70 Score=29.03 Aligned_cols=54 Identities=7% Similarity=0.052 Sum_probs=35.5
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC----C--c-EEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL----K--L-KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~----~--i-~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
.-++++|||-+..=-.=+..++.-+ + + .+.+++++ ..+-+++|||||++.+..+
T Consensus 156 ~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~n------------l~~~~~~ADIvIsAvGkp~ 216 (293)
T PRK14185 156 SGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSKN------------LKKECLEADIIIAALGQPE 216 (293)
T ss_pred CCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCCCC------------HHHHHhhCCEEEEccCCcC
Confidence 5789999998876555555555444 3 2 44455532 3445678999999988654
No 387
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.91 E-value=1.6e+02 Score=27.50 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=43.4
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcch--HHhhhhc---cCC-CcccccccCcEEEEecccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTE--GTVTGST---KKG-MATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~--a~~~a~~---~~g-~~~~~v~~advvv~~~~~~ 216 (224)
.+++.|||.|.-|..-++.+..... +.+++..... .+.|.+. ..| ...+.+.+.|+||.+.+--
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~SpgI~ 79 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNPGIA 79 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECCCCC
Confidence 3679999999999999999998854 4777755422 2234210 012 2445577899999887653
No 388
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.53 E-value=83 Score=28.35 Aligned_cols=52 Identities=6% Similarity=0.006 Sum_probs=33.4
Q ss_pred CCcEEEEEecC-HhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395 152 KDLVLAIMGSG-AQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiGaG-~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~ 215 (224)
..++++|||-+ ..++.....+. .++ +.+..++.. -..+.+++|||||++.+.
T Consensus 151 ~Gk~V~ViGrs~~vGrpla~lL~-~~~atVtv~hs~t~-----------~L~~~~~~ADIvI~Avgk 205 (279)
T PRK14178 151 AGKRAVVVGRSIDVGRPMAALLL-NADATVTICHSKTE-----------NLKAELRQADILVSAAGK 205 (279)
T ss_pred CCCEEEEECCCccccHHHHHHHH-hCCCeeEEEecChh-----------HHHHHHhhCCEEEECCCc
Confidence 57899999999 66665444443 343 344333221 145677899999999874
No 389
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.50 E-value=90 Score=28.12 Aligned_cols=54 Identities=6% Similarity=-0.018 Sum_probs=34.9
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEE-eCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKY-NRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~-~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
.-++++|||-+..=-.=+..++..+.- .+. ++++. ..+-+++|||||++.+..+
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~------------l~~~~~~ADIvIsAvGkp~ 213 (278)
T PRK14172 157 EGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKN------------LKEVCKKADILVVAIGRPK 213 (278)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCC------------HHHHHhhCCEEEEcCCCcC
Confidence 578999999876655555555544543 333 34321 3445678999999988754
No 390
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.85 E-value=77 Score=28.67 Aligned_cols=54 Identities=7% Similarity=0.004 Sum_probs=35.2
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh----CC--c-EEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS----LK--L-KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v----~~--i-~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||-+..=-.=+..++.- +. + .+.+++. -..+.+++|||||++.+..+
T Consensus 156 ~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~------------~l~~~~~~ADIVI~AvG~p~ 216 (286)
T PRK14184 156 AGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTP------------DLAEECREADFLFVAIGRPR 216 (286)
T ss_pred CCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCch------------hHHHHHHhCCEEEEecCCCC
Confidence 578999999887655555555544 33 2 3333331 14567889999999997654
No 391
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.81 E-value=1.9e+02 Score=26.93 Aligned_cols=64 Identities=9% Similarity=0.047 Sum_probs=39.4
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcch--HHhhhhccCCC-------cccccccCcEEEEecccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTE--GTVTGSTKKGM-------ATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~--a~~~a~~~~g~-------~~~~v~~advvv~~~~~~ 216 (224)
.++++|+|.|..|..-.+.+...-- +.+++..+.. .+.+.+...|+ ..+...+.|+||.+.+-.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~ 78 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGIS 78 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCC
Confidence 4689999999999998777654332 2667665442 12232211243 222235899999988765
No 392
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=29.64 E-value=48 Score=29.61 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=22.2
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL 176 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~ 176 (224)
...+|+|||.|..|-|-++||.+--
T Consensus 29 ~~~~V~VvGiGGVGSw~veALaRsG 53 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALARSG 53 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHHHcC
Confidence 4678999999999999999998753
No 393
>KOG2304|consensus
Probab=29.48 E-value=58 Score=29.09 Aligned_cols=36 Identities=19% Similarity=0.101 Sum_probs=25.8
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcch
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTE 187 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~ 187 (224)
.-++|+|||+|.++.-..+..+.. +++.+++++++.
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a 46 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA 46 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence 578999999999986555443332 456888888764
No 394
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.45 E-value=77 Score=28.62 Aligned_cols=54 Identities=9% Similarity=0.040 Sum_probs=33.2
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh--CC--cE-EEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS--LK--LK-KYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v--~~--i~-v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||-+..=-.=+..++.- ++ +. +.++++ . ..+.+++|||||++.+..+
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T~-----------~-l~~~~k~ADIvV~AvGkp~ 215 (284)
T PRK14193 157 AGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTR-----------D-LAAHTRRADIIVAAAGVAH 215 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCCC-----------C-HHHHHHhCCEEEEecCCcC
Confidence 578999999776544334443433 33 23 333332 1 4466788999999998654
No 395
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.42 E-value=1.3e+02 Score=26.25 Aligned_cols=66 Identities=17% Similarity=0.024 Sum_probs=46.4
Q ss_pred hhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhh------hccCCCcccccccCcEEEEeccc
Q psy13395 143 KHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTG------STKKGMATEDVITAKLIYDKYQA 215 (224)
Q Consensus 143 ~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a------~~~~g~~~~~v~~advvv~~~~~ 215 (224)
..++++ ..++++|||+=.-+-+..+++.....+.+.+.++....-+- ....++.. ++ |+||.-|+-
T Consensus 38 ~~~~~~---E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~lp~~v~Fr~~~~~~~G-~~---DlivDlTGl 109 (254)
T COG4017 38 DFLEGE---EFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFLPNNVKFRNLLKFIRG-EV---DLIVDLTGL 109 (254)
T ss_pred hhhccc---CcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcCCCCccHhhhcCCCCC-ce---eEEEecccc
Confidence 456777 89999999999999999999988777788887775433221 11222222 22 899888874
No 396
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=29.12 E-value=83 Score=28.66 Aligned_cols=53 Identities=9% Similarity=-0.001 Sum_probs=34.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccCCCcccccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~ 216 (224)
.-++++|||-+..=-.=+..++.-++- .+.+++++ ..+-+++|||||++.+.-
T Consensus 166 ~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~n------------l~~~~~~ADIvv~AvGk~ 221 (299)
T PLN02516 166 KGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPD------------PESIVREADIVIAAAGQA 221 (299)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCC------------HHHHHhhCCEEEEcCCCc
Confidence 678999999887655555555544543 33344321 345678899999998764
No 397
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=29.01 E-value=64 Score=28.77 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.2
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL 176 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~ 176 (224)
...+|+|||+|..|-+.++++...-
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~G 53 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTG 53 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcC
Confidence 5678999999999999999998753
No 398
>PRK08163 salicylate hydroxylase; Provisional
Probab=28.92 E-value=85 Score=28.36 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=26.7
Q ss_pred CcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLT 186 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~ 186 (224)
...|+|||+|.-|.....++... .++.|+.|.++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 46799999999999999888764 22388887764
No 399
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=28.81 E-value=1.8e+02 Score=23.83 Aligned_cols=41 Identities=7% Similarity=0.090 Sum_probs=32.3
Q ss_pred EEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHH
Q psy13395 123 VMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYI 167 (224)
Q Consensus 123 llDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~ 167 (224)
.+.......|--+...++++++ +.+ +..+++|+|-|.--..
T Consensus 43 ~~~~~~~g~mG~~l~~aiGaal-a~~---~~~vv~i~GDG~f~~~ 83 (183)
T cd02005 43 FISQPLWGSIGYSVPAALGAAL-AAP---DRRVILLVGDGSFQMT 83 (183)
T ss_pred EEeccchhhHhhhHHHHHHHHH-hCC---CCeEEEEECCchhhcc
Confidence 4455667888888899999984 566 7899999999988543
No 400
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.53 E-value=1e+02 Score=27.87 Aligned_cols=54 Identities=9% Similarity=-0.016 Sum_probs=35.3
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEE-eCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKY-NRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~-~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||-+..=-.=+..++.-.+- .++ ++++. ..+-+++|||||++.+-.+
T Consensus 156 ~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~n------------l~~~~~~ADIvI~AvGk~~ 212 (282)
T PRK14182 156 KGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTAD------------LAGEVGRADILVAAIGKAE 212 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCC------------HHHHHhhCCEEEEecCCcC
Confidence 688999999887655555555544443 333 33321 3456789999999998654
No 401
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=28.49 E-value=91 Score=29.77 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=20.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS 175 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v 175 (224)
..++|+|||+|+-|..-++.+...
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~ 32 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRRE 32 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhc
Confidence 578999999999999988887764
No 402
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=28.44 E-value=2.6e+02 Score=25.54 Aligned_cols=64 Identities=20% Similarity=0.126 Sum_probs=38.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCC-------cccc----cccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGM-------ATED----VITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~-------~~~~----v~~advvv~~~~~~ 216 (224)
...+|+|+|+|..+...++.....-- +.+..++.++...++.+ .|. ..+. ....|+|+.+++..
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~-lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~ 253 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR-LGADSFLVTTDSQKMKEAVGTMDFIIDTVSAE 253 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh-CCCcEEEcCcCHHHHHHhhCCCcEEEECCCcH
Confidence 46789999999999998887655422 24555555543334321 221 0111 12479999988754
No 403
>PRK07326 short chain dehydrogenase; Provisional
Probab=28.29 E-value=1e+02 Score=25.29 Aligned_cols=41 Identities=22% Similarity=0.139 Sum_probs=29.2
Q ss_pred CcEEEEEec-CHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhh
Q psy13395 153 DLVLAIMGS-GAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGS 193 (224)
Q Consensus 153 ~~~l~iiGa-G~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~ 193 (224)
.++++|+|+ |.+|..-++.+...- .+.+.+|++++.+.+.+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAA 48 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHH
Confidence 467888874 888988888887642 24777888877665543
No 404
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=28.27 E-value=1.1e+02 Score=26.32 Aligned_cols=64 Identities=9% Similarity=-0.019 Sum_probs=38.0
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhh------hccC---C---CcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTG------STKK---G---MATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a------~~~~---g---~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||-+..=-.=+..++.-..- .+.+.+- -.-|. .... . ...+-+++|||||++.+.-+
T Consensus 61 ~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~--~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~ 138 (197)
T cd01079 61 YGKTITIINRSEVVGRPLAALLANDGARVYSVDING--IQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPN 138 (197)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCc--ccccccccccccccccccchhhHHHHHhhhCCEEEEccCCCC
Confidence 688999999988766666666655553 3332110 00011 1110 1 13466899999999988654
No 405
>PRK05993 short chain dehydrogenase; Provisional
Probab=28.13 E-value=1.1e+02 Score=26.24 Aligned_cols=41 Identities=12% Similarity=0.076 Sum_probs=29.9
Q ss_pred CcEEEEEec-CHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhh
Q psy13395 153 DLVLAIMGS-GAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGS 193 (224)
Q Consensus 153 ~~~l~iiGa-G~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~ 193 (224)
.++++|.|+ |..|+..++.+...- .+.+.+|++++.+.+.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~ 46 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA 46 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 457888887 889988888877632 23777888887776654
No 406
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=27.87 E-value=89 Score=29.10 Aligned_cols=54 Identities=4% Similarity=-0.057 Sum_probs=34.9
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--c-EEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--L-KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i-~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||-+..=-.=+..++.-.. + .+.+++++ ..+-+++|||||++.+..+
T Consensus 213 ~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~n------------l~~~~~~ADIvIsAvGkp~ 269 (345)
T PLN02897 213 AGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKD------------PEQITRKADIVIAAAGIPN 269 (345)
T ss_pred CCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCCC------------HHHHHhhCCEEEEccCCcC
Confidence 58899999977654444444444444 2 44455532 2445789999999988654
No 407
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=27.84 E-value=1.1e+02 Score=25.19 Aligned_cols=41 Identities=12% Similarity=0.017 Sum_probs=29.8
Q ss_pred CCcEEEEEe-cCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhh
Q psy13395 152 KDLVLAIMG-SGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTG 192 (224)
Q Consensus 152 ~~~~l~iiG-aG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a 192 (224)
..++++|.| +|.+|++-++.+.... .+.+.+|++++.+.+.
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~ 47 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATA 47 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 356788888 6999999999887653 2477788876655443
No 408
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=27.80 E-value=62 Score=25.13 Aligned_cols=30 Identities=13% Similarity=0.031 Sum_probs=22.8
Q ss_pred EEEEEecCHhHHHHHHHHHHhCC--cEEEeCC
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASLK--LKKYNRG 184 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~ 184 (224)
+++|+|+|..|..-++.+...-- +.+++.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 48999999999999999877642 3555533
No 409
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=27.78 E-value=1.2e+02 Score=28.35 Aligned_cols=63 Identities=8% Similarity=0.113 Sum_probs=38.3
Q ss_pred cEEEEEec-CHhHHHHHHHHHHhCCc-----EEEeCCcchHH---hhhhccC---C-CcccccccCcEEEEeccccc
Q psy13395 154 LVLAIMGS-GAQAYIHAKAFHASLKL-----KKYNRGLTEGT---VTGSTKK---G-MATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 154 ~~l~iiGa-G~QA~~hl~a~~~v~~i-----~v~~R~~~~a~---~~a~~~~---g-~~~~~v~~advvv~~~~~~~ 217 (224)
.+++|+|+ |..|+..++.++.-+.+ ..++.. ..++ .|..... . ...++..+.|||+.+++...
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~-~sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~~ 77 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS-QAGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGDY 77 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch-hhCCcccccCCCcceEEecCChhHhcCCCEEEECCCHHH
Confidence 36899997 99999999866665543 334332 1222 2222111 1 12456678999999887643
No 410
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=27.55 E-value=1.1e+02 Score=29.42 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=42.6
Q ss_pred CcEEEEEecCHhHHH-HHHHHHHhCC---c---EEEeCCcchHHhhhh------ccCCC---------cccccccCcEEE
Q psy13395 153 DLVLAIMGSGAQAYI-HAKAFHASLK---L---KKYNRGLTEGTVTGS------TKKGM---------ATEDVITAKLIY 210 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~-hl~a~~~v~~---i---~v~~R~~~~a~~~a~------~~~g~---------~~~~v~~advvv 210 (224)
.-.+++||.|-+-.. .+..+....+ + .+++-+.++.+.... +..|. ..+|+.+||.|+
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdfVi 82 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGADFVI 82 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCCEEE
Confidence 457999999988744 3334444333 3 888999888764332 12233 589999999999
Q ss_pred Eeccc
Q psy13395 211 DKYQA 215 (224)
Q Consensus 211 ~~~~~ 215 (224)
+.-|-
T Consensus 83 ~~~rv 87 (442)
T COG1486 83 TQIRV 87 (442)
T ss_pred EEEee
Confidence 98664
No 411
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=27.35 E-value=78 Score=24.61 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=17.9
Q ss_pred cccccccCcEEEEecccccccC
Q psy13395 199 ATEDVITAKLIYDKYQAQHSNC 220 (224)
Q Consensus 199 ~~~~v~~advvv~~~~~~~~~~ 220 (224)
...++.++|+||+-+..++.++
T Consensus 70 ~~~~~~~aDlIi~m~~~~~~~~ 91 (141)
T cd00115 70 TEDDFDEFDLIITMDESNLAEL 91 (141)
T ss_pred CHHHHHhCCEEEEECHHHHHHH
Confidence 5667889999999999877553
No 412
>PRK00536 speE spermidine synthase; Provisional
Probab=27.27 E-value=1.4e+02 Score=26.59 Aligned_cols=72 Identities=8% Similarity=-0.096 Sum_probs=41.1
Q ss_pred EEEEEEeCCCCcEEEEEeCccchhhhhh-hhhH-Hh-hhhhccCCCCCCcEEEEEecCH--hHHHHHHHHHHhCCcEEEe
Q psy13395 108 ATVLLYNTDNGKLKVVMEGTEITKWRTA-AASV-VA-TKHLFGRSGDKDLVLAIMGSGA--QAYIHAKAFHASLKLKKYN 182 (224)
Q Consensus 108 g~i~L~D~~TG~p~AllDg~~lT~~RTa-A~Sa-la-a~~Lar~~~~~~~~l~iiGaG~--QA~~hl~a~~~v~~i~v~~ 182 (224)
--|.+|+..+=.-..+||+..+|. |-- .-.= ++ .-+++-+ ++++|+|||.|- .+|.-+|.= -.+.+..
T Consensus 29 Q~i~i~es~~fGr~LvLD~~~~te-~dEfiYHEmLvHppl~~h~---~pk~VLIiGGGDGg~~REvLkh~---~~v~mVe 101 (262)
T PRK00536 29 NILEIFKSKDFGEIAMLNKQLLFK-NFLHIESELLAHMGGCTKK---ELKEVLIVDGFDLELAHQLFKYD---THVDFVQ 101 (262)
T ss_pred cEEEEEEccccccEEEEeeeeeec-chhhhHHHHHHHHHHhhCC---CCCeEEEEcCCchHHHHHHHCcC---CeeEEEE
Confidence 456777777777777889555433 321 1111 11 1235667 899999999985 445555541 1345555
Q ss_pred CCcc
Q psy13395 183 RGLT 186 (224)
Q Consensus 183 R~~~ 186 (224)
-+++
T Consensus 102 ID~~ 105 (262)
T PRK00536 102 ADEK 105 (262)
T ss_pred CCHH
Confidence 5554
No 413
>PRK08328 hypothetical protein; Provisional
Probab=27.21 E-value=1.1e+02 Score=26.28 Aligned_cols=31 Identities=19% Similarity=0.127 Sum_probs=23.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEe
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYN 182 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~ 182 (224)
...+|+|+|+|..|...++.+...-- +.+++
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD 58 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLID 58 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 45689999999999999988876532 35554
No 414
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.14 E-value=1.1e+02 Score=27.85 Aligned_cols=54 Identities=6% Similarity=-0.061 Sum_probs=34.3
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--E-EEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--K-KYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~-v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||-+..=-.=+..++..+.- . +.+++++ ..+-+++|||||++.+..+
T Consensus 157 ~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~------------l~~~~~~ADIvIsAvGkp~ 213 (297)
T PRK14186 157 AGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQD------------LASITREADILVAAAGRPN 213 (297)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCC------------HHHHHhhCCEEEEccCCcC
Confidence 578999999876554444454544543 3 3344431 3345678999999988654
No 415
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=27.13 E-value=2.3e+02 Score=26.63 Aligned_cols=37 Identities=11% Similarity=0.051 Sum_probs=29.1
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchH
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEG 188 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a 188 (224)
.-.+++|||+|..+.+-++....+-- |.-.+.+++|.
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl 223 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKL 223 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHH
Confidence 57899999999999999998877764 35556666653
No 416
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.11 E-value=1.1e+02 Score=27.74 Aligned_cols=54 Identities=7% Similarity=-0.014 Sum_probs=35.5
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EE-EeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KK-YNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v-~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||-+..=-.=+..++..+.- .+ .+++++ ..+-+++|||||++.+..+
T Consensus 158 ~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~------------l~~~~~~ADIvIsAvGk~~ 214 (284)
T PRK14177 158 TGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQN------------LPSIVRQADIIVGAVGKPE 214 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCC------------HHHHHhhCCEEEEeCCCcC
Confidence 578999999877655555555555543 33 334431 2355789999999988654
No 417
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=26.70 E-value=91 Score=28.61 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=33.2
Q ss_pred EEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhcc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTK 195 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~ 195 (224)
+++|||+|.-+.....++...-- +.||.+...-.-++|.++
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRR 44 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRR 44 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheec
Confidence 68999999999998888777643 599988888777777754
No 418
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=26.55 E-value=75 Score=27.98 Aligned_cols=24 Identities=8% Similarity=0.230 Sum_probs=21.9
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS 175 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v 175 (224)
...+++|||+|..|-.-++.+.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~ 33 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARL 33 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHc
Confidence 578999999999999999999875
No 419
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.48 E-value=92 Score=28.33 Aligned_cols=54 Identities=6% Similarity=-0.028 Sum_probs=32.8
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC----C--c-EEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL----K--L-KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~----~--i-~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
..++++|||-+..=-.=+..++.-+ . + .+.+++++ ..+-+++|||||++.+..+
T Consensus 156 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~~------------l~~~~~~ADIvIsAvGkp~ 216 (297)
T PRK14167 156 EGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTDD------------LAAKTRRADIVVAAAGVPE 216 (297)
T ss_pred CCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCCCC------------HHHHHhhCCEEEEccCCcC
Confidence 5789999997764433333333333 3 2 33344431 3456788999999988654
No 420
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=26.41 E-value=2.1e+02 Score=26.91 Aligned_cols=65 Identities=9% Similarity=-0.021 Sum_probs=41.2
Q ss_pred CCcEEEEEecCHhHHH-HHHHHHHhCC-cEEEeCCcch-HHhhhhc----cCCCcccccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYI-HAKAFHASLK-LKKYNRGLTE-GTVTGST----KKGMATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~-hl~a~~~v~~-i~v~~R~~~~-a~~~a~~----~~g~~~~~v~~advvv~~~~~~ 216 (224)
+.+++.|||.|.-|.. -++.+...-- +.+++..... .+.|.+. ..|...+.+.++|+||.+-+-.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~ 77 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIP 77 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCC
Confidence 4568999999999999 5666665432 3777765432 2334221 0133455677899999887654
No 421
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=26.36 E-value=1.4e+02 Score=28.31 Aligned_cols=84 Identities=17% Similarity=0.114 Sum_probs=50.1
Q ss_pred eCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHh----------------HHHHHHHHHHhCCc--EEEeCCcc
Q psy13395 125 EGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQ----------------AYIHAKAFHASLKL--KKYNRGLT 186 (224)
Q Consensus 125 Dg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~Q----------------A~~hl~a~~~v~~i--~v~~R~~~ 186 (224)
-|..||...=+..++++...+.-- ...+++||=+|.- -...+.+++.-+.+ .-+.+-++
T Consensus 168 ~G~~l~p~~i~~Las~G~~~V~V~---~~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~D 244 (419)
T PRK14690 168 AGRRLTPADLALLSAVGLTRVSVR---RPLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRWGHAPVDLGRVGD 244 (419)
T ss_pred CCCCCCHHHHHHHHhCCCCeeEee---cCCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHCCCEEEEEeeeCC
Confidence 567777777777777777666544 5678999988832 13344454444444 33444444
Q ss_pred hHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395 187 EGTVTGSTKKGMATEDVITAKLIYDKYQA 215 (224)
Q Consensus 187 ~a~~~a~~~~g~~~~~v~~advvv~~~~~ 215 (224)
..+.+.+.. .+++.++||||++=+.
T Consensus 245 d~~~i~~~l----~~a~~~~DlIItTGG~ 269 (419)
T PRK14690 245 DRAALAARL----DRAAAEADVILTSGGA 269 (419)
T ss_pred CHHHHHHHH----HHhCccCCEEEEcCCc
Confidence 545554432 2234578999997543
No 422
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=26.30 E-value=1.5e+02 Score=27.37 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=36.1
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHHhCCc--EEEeCCcc----h----HHhhhhccCC--C-----cccccccCcEEEEec
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHASLKL--KKYNRGLT----E----GTVTGSTKKG--M-----ATEDVITAKLIYDKY 213 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~v~~i--~v~~R~~~----~----a~~~a~~~~g--~-----~~~~v~~advvv~~~ 213 (224)
+..+|+++|- ...++..+.++.. ++. ++..+..= . +++.+.. .| + ..+++.+||||++..
T Consensus 153 ~glkv~~vGD~~~v~~Sl~~~~~~-~g~~v~~~~P~~~~~~~~~~~~~~~~~~~-~g~~~~~~~d~~eav~~aDvvy~~~ 230 (338)
T PRK02255 153 EDCKVVFVGDATQVCVSLMFIATK-MGMDFVHFGPKGYQLPEEHLAIAEENCEV-SGGSVLVTDDVDEAVKDADFVYTDV 230 (338)
T ss_pred CCCEEEEECCCchHHHHHHHHHHh-CCCEEEEECCCccccCHHHHHHHHHHHHh-cCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 5689999998 4566666666544 454 55554311 1 1111111 12 2 478999999999944
No 423
>PLN02366 spermidine synthase
Probab=26.23 E-value=1.3e+02 Score=27.17 Aligned_cols=75 Identities=11% Similarity=0.079 Sum_probs=42.7
Q ss_pred EEEEEEEeCCCCcEEEEEeCccchhhhhhh-hhHHhh--hhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCCc---EE
Q psy13395 107 LATVLLYNTDNGKLKVVMEGTEITKWRTAA-ASVVAT--KHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKL---KK 180 (224)
Q Consensus 107 ~g~i~L~D~~TG~p~AllDg~~lT~~RTaA-~Salaa--~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~i---~v 180 (224)
..-|.+++..+..-.-++||..-+.-|.-- ..-.-+ -.+..+ ++++|++||+|.=+. ++.++...++ .+
T Consensus 46 yQ~i~v~~~~~~g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~---~pkrVLiIGgG~G~~--~rellk~~~v~~V~~ 120 (308)
T PLN02366 46 FQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIP---NPKKVLVVGGGDGGV--LREIARHSSVEQIDI 120 (308)
T ss_pred CeeEEEEEcCCCceEEEECCEeeecCccHHHHHHHHHHHHHhhCC---CCCeEEEEcCCccHH--HHHHHhCCCCCeEEE
Confidence 466788887774456688988655444411 111111 122346 799999999986332 2333333333 56
Q ss_pred EeCCcc
Q psy13395 181 YNRGLT 186 (224)
Q Consensus 181 ~~R~~~ 186 (224)
+..+++
T Consensus 121 VEiD~~ 126 (308)
T PLN02366 121 CEIDKM 126 (308)
T ss_pred EECCHH
Confidence 666664
No 424
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=25.68 E-value=1.2e+02 Score=27.42 Aligned_cols=61 Identities=15% Similarity=-0.004 Sum_probs=38.4
Q ss_pred CCcEEEEEecC---HhHHHHHHHHHHhCCc--EEEeCCcchHHhhhh-ccCCCcccccccCcEEEEec
Q psy13395 152 KDLVLAIMGSG---AQAYIHAKAFHASLKL--KKYNRGLTEGTVTGS-TKKGMATEDVITAKLIYDKY 213 (224)
Q Consensus 152 ~~~~l~iiGaG---~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~-~~~g~~~~~v~~advvv~~~ 213 (224)
+..+|+++|-+ ..++..+.++.. +++ .+.++..-.-+.+.+ +...-..+++.+||||++..
T Consensus 155 ~g~kv~~vGD~~~~~v~~Sl~~~~~~-~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~~ 221 (305)
T PRK00856 155 EGLKVAIVGDIKHSRVARSNIQALTR-LGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMMLR 221 (305)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH-cCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEECC
Confidence 57899999985 889999987655 565 555443211111111 11111568999999999954
No 425
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=25.22 E-value=2.1e+02 Score=23.23 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=31.0
Q ss_pred EeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHH
Q psy13395 124 MEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIH 168 (224)
Q Consensus 124 lDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~h 168 (224)
+.......|--+..+++++++ +++ +.++++|+|=|.-....
T Consensus 42 ~~~~~~g~mG~~lp~aiGa~l-a~~---~~~vv~i~GDG~f~m~~ 82 (177)
T cd02010 42 LISNGLATMGVALPGAIGAKL-VYP---DRKVVAVSGDGGFMMNS 82 (177)
T ss_pred EeCCCChhhhhHHHHHHHHHH-hCC---CCcEEEEEcchHHHhHH
Confidence 334456678888888888874 667 78999999999976444
No 426
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=25.20 E-value=73 Score=27.67 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.1
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS 175 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v 175 (224)
...+++|||+|..|-+-++++...
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~ 33 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARS 33 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHc
Confidence 356899999999999999998775
No 427
>PRK06847 hypothetical protein; Provisional
Probab=25.16 E-value=1.3e+02 Score=26.82 Aligned_cols=35 Identities=14% Similarity=0.051 Sum_probs=26.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLT 186 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~ 186 (224)
+...|+|||+|+-|.+-..++...- ++.|+.|..+
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4568999999999999888876631 2388877654
No 428
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=25.05 E-value=1.9e+02 Score=26.80 Aligned_cols=62 Identities=18% Similarity=0.121 Sum_probs=38.9
Q ss_pred EEEEecCHhHHHHHHHHHHhCC-cEEEeCCcch-HH---hhhhccCCC------cccccccCcEEEEeccccc
Q psy13395 156 LAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTE-GT---VTGSTKKGM------ATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 156 l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~-a~---~~a~~~~g~------~~~~v~~advvv~~~~~~~ 217 (224)
+.|||.|..|..-++.+...-. +.+++..+.. .+ .+.+...|+ ..+.+.++|+||-+.+-..
T Consensus 2 ~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~ 74 (433)
T TIGR01087 2 ILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPP 74 (433)
T ss_pred EEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCC
Confidence 6899999999977777666532 3777754432 11 111111233 4556778999998876643
No 429
>PRK11445 putative oxidoreductase; Provisional
Probab=25.03 E-value=1e+02 Score=27.68 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=25.8
Q ss_pred EEEEEecCHhHHHHHHHHHHhCCcEEEeCCcc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASLKLKKYNRGLT 186 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~ 186 (224)
.|+|||+|+-|.+...++...+.+.++.|.++
T Consensus 3 dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~ 34 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGKMKVIAIDKKHQ 34 (351)
T ss_pred eEEEECCCHHHHHHHHHHhccCCEEEEECCCc
Confidence 58999999999999988877644588887763
No 430
>PRK06949 short chain dehydrogenase; Provisional
Probab=25.00 E-value=1.5e+02 Score=24.66 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=30.9
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhh
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGS 193 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~ 193 (224)
..++++|.|+ |..|+..++.+...-- +.+..|++++.+.+.+
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~ 51 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRA 51 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4578888885 8899999988876422 4777888887766544
No 431
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=24.87 E-value=99 Score=26.69 Aligned_cols=59 Identities=7% Similarity=0.101 Sum_probs=37.8
Q ss_pred EEEEEe-cCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc-----cCCC-----cccccccCcEEEEec
Q psy13395 155 VLAIMG-SGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST-----KKGM-----ATEDVITAKLIYDKY 213 (224)
Q Consensus 155 ~l~iiG-aG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~-----~~g~-----~~~~v~~advvv~~~ 213 (224)
+++|+| +|.+|...++.|...- .+.+.+|++++.+.+.+. ...+ ..+.+.+.|+||-.-
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 578888 5999999999987652 347778887765444321 1111 234455678888654
No 432
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=24.77 E-value=1.3e+02 Score=27.37 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=25.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLT 186 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~ 186 (224)
+.++|+|+|+|..++.+++++... .+ .+++.+++
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~~~~-G~~v~~~~~~~~ 46 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEAQRL-GVEVIAVDRYAN 46 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 467999999999999999986664 43 55555554
No 433
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=24.71 E-value=1.9e+02 Score=25.77 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=39.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC---Cc-------EEE--e--------CCc-ch-HHh---hhhcc--CCCcccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL---KL-------KKY--N--------RGL-TE-GTV---TGSTK--KGMATEDVI 204 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~---~i-------~v~--~--------R~~-~~-a~~---~a~~~--~g~~~~~v~ 204 (224)
...+++|+|+|.-+..-.+.+.... .+ ++| + |.. .. -+. |+... .+-..++|.
T Consensus 24 ~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~ 103 (254)
T cd00762 24 SEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVE 103 (254)
T ss_pred hhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHH
Confidence 4689999999998877776665542 11 333 2 211 11 123 44432 244788888
Q ss_pred --cCcEEEEecc
Q psy13395 205 --TAKLIYDKYQ 214 (224)
Q Consensus 205 --~advvv~~~~ 214 (224)
++||+|..++
T Consensus 104 ~~kptvlIG~S~ 115 (254)
T cd00762 104 AAKPDFLIGVSR 115 (254)
T ss_pred hhCCCEEEEeCC
Confidence 9999998765
No 434
>KOG0273|consensus
Probab=24.60 E-value=1e+02 Score=30.03 Aligned_cols=40 Identities=23% Similarity=0.158 Sum_probs=32.3
Q ss_pred CeEEEEEEeecCC--CCCCCCC----ceEEEEEEEeCCCCcEEEEE
Q psy13395 85 DSLAIKVVTSFTD--NKVKGLP----SVLATVLLYNTDNGKLKVVM 124 (224)
Q Consensus 85 ~~~GvK~vs~~p~--N~~~glP----~~~g~i~L~D~~TG~p~All 124 (224)
.++.+||....|. |+..|++ ...+++.|+|.+.|.|++.+
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f 448 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL 448 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee
Confidence 3688999888776 4566776 45678999999999999985
No 435
>KOG0455|consensus
Probab=24.53 E-value=70 Score=29.02 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=20.8
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhCC
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASLK 177 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~~ 177 (224)
.-+|+++|||..++..++.+...+.
T Consensus 3 ~vnVa~~G~G~vG~~lL~qi~~~~s 27 (364)
T KOG0455|consen 3 KVNVALMGCGGVGRHLLQQIVSCRS 27 (364)
T ss_pred cccEEEEeccchHHHHHHHHHHHhh
Confidence 3579999999999998888777664
No 436
>COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]
Probab=24.52 E-value=61 Score=33.31 Aligned_cols=28 Identities=14% Similarity=0.392 Sum_probs=25.1
Q ss_pred CCCCceEEEEEEEeCCCCcEEEEEeCcc
Q psy13395 101 KGLPSVLATVLLYNTDNGKLKVVMEGTE 128 (224)
Q Consensus 101 ~glP~~~g~i~L~D~~TG~p~AllDg~~ 128 (224)
+-.|.++|.++-+|++||..+|++-|..
T Consensus 414 ~QiP~v~galVsmdp~tG~I~AlVGGfs 441 (797)
T COG5009 414 RQIPEVNGALVSLDPKTGAILALVGGFS 441 (797)
T ss_pred ecccccccceEEEeCCCCeEEEEecccc
Confidence 3579999999999999999999998754
No 437
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=24.49 E-value=1.3e+02 Score=26.62 Aligned_cols=24 Identities=33% Similarity=0.279 Sum_probs=21.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS 175 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v 175 (224)
...+++|-|.|..|++-++.+...
T Consensus 37 ~g~~vaIqGfGnVG~~~a~~L~e~ 60 (254)
T cd05313 37 KGKRVAISGSGNVAQYAAEKLLEL 60 (254)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC
Confidence 468999999999999999998875
No 438
>PRK08703 short chain dehydrogenase; Provisional
Probab=24.38 E-value=1.5e+02 Score=24.49 Aligned_cols=41 Identities=17% Similarity=0.061 Sum_probs=27.9
Q ss_pred CcEEEEEec-CHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhh
Q psy13395 153 DLVLAIMGS-GAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGS 193 (224)
Q Consensus 153 ~~~l~iiGa-G~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~ 193 (224)
.+++.|.|+ |..|+..++.+...- .+.+.+|++++.+.+.+
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYD 48 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHH
Confidence 457777775 788888888877632 23777888877665543
No 439
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=24.07 E-value=1.6e+02 Score=26.41 Aligned_cols=74 Identities=11% Similarity=0.111 Sum_probs=45.9
Q ss_pred EEEEEEEeCCCCcEEEEEeCccchhhhhh-hhhHHhhh--hhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCCc---EE
Q psy13395 107 LATVLLYNTDNGKLKVVMEGTEITKWRTA-AASVVATK--HLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKL---KK 180 (224)
Q Consensus 107 ~g~i~L~D~~TG~p~AllDg~~lT~~RTa-A~Salaa~--~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~i---~v 180 (224)
..-+.+++.++=.-.-++||...+..|=. ....+.+. .++.+ ++++|+|||-|.=+- +|.++...++ .+
T Consensus 31 ~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEml~h~~~~ah~---~pk~VLiiGgGdG~t--lRevlkh~~ve~i~~ 105 (282)
T COG0421 31 YQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLLAHP---NPKRVLIIGGGDGGT--LREVLKHLPVERITM 105 (282)
T ss_pred ceEEEEEeccccceEEEecChhhhccchhHHHHHHHHhchhhhCC---CCCeEEEECCCccHH--HHHHHhcCCcceEEE
Confidence 34567777443334445588888877776 55555553 45777 889999999886543 3444554544 44
Q ss_pred EeCCc
Q psy13395 181 YNRGL 185 (224)
Q Consensus 181 ~~R~~ 185 (224)
..-++
T Consensus 106 VEID~ 110 (282)
T COG0421 106 VEIDP 110 (282)
T ss_pred EEcCH
Confidence 44444
No 440
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=23.95 E-value=1e+02 Score=31.07 Aligned_cols=63 Identities=10% Similarity=-0.020 Sum_probs=42.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--c--EEEeCCcchHH---hhhh---c-cCCC------------cccccccCcE
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--L--KKYNRGLTEGT---VTGS---T-KKGM------------ATEDVITAKL 208 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i--~v~~R~~~~a~---~~a~---~-~~g~------------~~~~v~~adv 208 (224)
...+|+|+|.|..+.+.+..+...-- | .++++-+.+.. ++++ . ..++ ..+.+...|+
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~Di 207 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEPADW 207 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcCCcE
Confidence 57899999999999999999988742 4 33444433222 3333 1 0111 4677789999
Q ss_pred EEEecc
Q psy13395 209 IYDKYQ 214 (224)
Q Consensus 209 vv~~~~ 214 (224)
|+..+.
T Consensus 208 Vi~vsD 213 (637)
T TIGR03693 208 VLYVSD 213 (637)
T ss_pred EEEECC
Confidence 998775
No 441
>PRK10537 voltage-gated potassium channel; Provisional
Probab=23.85 E-value=1.8e+02 Score=27.39 Aligned_cols=64 Identities=8% Similarity=-0.100 Sum_probs=40.3
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc-----C-----CCcccccccCcEEEEeccccc
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK-----K-----GMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~-----~-----g~~~~~v~~advvv~~~~~~~ 217 (224)
..++.|+|.|..|+.-++.+.+.. ++.+...++. .+.+.+.. . -+..+-+.+||.||..+....
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~-~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~ 314 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGL-EHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDA 314 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchh-hhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChH
Confidence 578999999999999999876532 3455555422 12221110 0 113556779999998876543
No 442
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=23.79 E-value=1.3e+02 Score=27.28 Aligned_cols=60 Identities=22% Similarity=0.159 Sum_probs=38.8
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHHhCCc--EEEeCCcchH-Hhh----hhccCCC-------cccccccCcEEEEec
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHASLKL--KKYNRGLTEG-TVT----GSTKKGM-------ATEDVITAKLIYDKY 213 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~v~~i--~v~~R~~~~a-~~~----a~~~~g~-------~~~~v~~advvv~~~ 213 (224)
+..+|+++|- +..++..+.++.. +++ .+.++..-.. +.+ +++ .|. ..+++.+||||++..
T Consensus 151 ~gl~i~~vGd~~~v~~Sl~~~l~~-~g~~v~~~~P~~~~~~~~~~~~~~~~-~g~~~~~~~d~~~a~~~aDvvy~~~ 225 (304)
T PRK00779 151 KGLKVAWVGDGNNVANSLLLAAAL-LGFDLRVATPKGYEPDPEIVEKIAKE-TGASIEVTHDPKEAVKGADVVYTDV 225 (304)
T ss_pred CCcEEEEEeCCCccHHHHHHHHHH-cCCEEEEECCcccCCCHHHHHHHHHH-cCCeEEEEcCHHHHhCCCCEEEecC
Confidence 6789999998 7788888888654 565 4444322111 112 222 231 578899999999963
No 443
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=23.72 E-value=1.2e+02 Score=21.57 Aligned_cols=31 Identities=16% Similarity=0.394 Sum_probs=27.1
Q ss_pred EEEEEEEeCCCCcEEEEEeCccchhhhhhhh
Q psy13395 107 LATVLLYNTDNGKLKVVMEGTEITKWRTAAA 137 (224)
Q Consensus 107 ~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~ 137 (224)
.=+|-|||+.||+..-.+.|-....++|...
T Consensus 26 smtvrl~d~~sg~~~l~vtGI~~~~l~s~rd 56 (69)
T PF07865_consen 26 SMTVRLFDPASGRVELTVTGISTSALNSSRD 56 (69)
T ss_pred cEEEEEecCCCCcEEEEEcCcCHHHcCCHHH
Confidence 4678889999999999999999999998754
No 444
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=23.55 E-value=92 Score=23.93 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=36.3
Q ss_pred CCcEEEEEecCHh---HHHHHHHHHHhCCcEEEeCCcchHHhhhhc------cCCC-----cccccccCcEEEEe
Q psy13395 152 KDLVLAIMGSGAQ---AYIHAKAFHASLKLKKYNRGLTEGTVTGST------KKGM-----ATEDVITAKLIYDK 212 (224)
Q Consensus 152 ~~~~l~iiGaG~Q---A~~hl~a~~~v~~i~v~~R~~~~a~~~a~~------~~g~-----~~~~v~~advvv~~ 212 (224)
..+-+.|+|.|.. +...++.|.+..++-++.--. ..-.|-+. ..|. ..+.+.+||+|+.-
T Consensus 11 A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~-~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~i 84 (137)
T PF00205_consen 11 AKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPM-GKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAI 84 (137)
T ss_dssp -SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGG-GTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEE
T ss_pred CCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCc-cccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEE
Confidence 3677999999987 788999999998873332111 11112211 1122 35777899999864
No 445
>PRK12829 short chain dehydrogenase; Provisional
Probab=23.19 E-value=1.9e+02 Score=24.06 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=28.6
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhh
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGS 193 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~ 193 (224)
..++++|+|+ |..|+.-++.+..--. +.+.+|+++..+.+.+
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAA 53 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4577888886 7788888887765322 3777787776665544
No 446
>PRK08219 short chain dehydrogenase; Provisional
Probab=23.18 E-value=1.7e+02 Score=23.69 Aligned_cols=39 Identities=13% Similarity=-0.024 Sum_probs=28.3
Q ss_pred cEEEEEec-CHhHHHHHHHHHHhCCcEEEeCCcchHHhhh
Q psy13395 154 LVLAIMGS-GAQAYIHAKAFHASLKLKKYNRGLTEGTVTG 192 (224)
Q Consensus 154 ~~l~iiGa-G~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a 192 (224)
++++|+|+ |..|+.-++.+..-+.+.+.+|++++.+.+.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~~~V~~~~r~~~~~~~~~ 43 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPTHTLLLGGRPAERLDELA 43 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhhCCEEEEeCCHHHHHHHH
Confidence 46778775 8888888887776644578888887765554
No 447
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=23.15 E-value=1.2e+02 Score=27.71 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=26.5
Q ss_pred EEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLT 186 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~ 186 (224)
+|+|||+|.-|.+...++...- .+.|+-|.++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 6899999999999999988753 4588888765
No 448
>KOG0068|consensus
Probab=23.15 E-value=1.2e+02 Score=28.55 Aligned_cols=57 Identities=18% Similarity=0.040 Sum_probs=33.4
Q ss_pred CcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCC--cchHHhhhhccCCCcccccccCcEEE
Q psy13395 153 DLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRG--LTEGTVTGSTKKGMATEDVITAKLIY 210 (224)
Q Consensus 153 ~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~--~~~a~~~a~~~~g~~~~~v~~advvv 210 (224)
-++++|+|.|.+|..-.+.+....-- ..|++= .+.+++|.=+. =...|.+.+||.|=
T Consensus 146 GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~-vsl~Eil~~ADFit 205 (406)
T KOG0068|consen 146 GKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQL-VSLEEILPKADFIT 205 (406)
T ss_pred ccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHhcccee-eeHHHHHhhcCEEE
Confidence 78999999999999988887765531 222221 12233331110 01456666777764
No 449
>PRK12939 short chain dehydrogenase; Provisional
Probab=23.14 E-value=1.8e+02 Score=23.98 Aligned_cols=42 Identities=10% Similarity=-0.014 Sum_probs=29.8
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhh
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGS 193 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~ 193 (224)
..++++|+|+ |..|+..++.+...- .+.+.+|++++.+.+.+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAA 49 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 3467888885 899999998887642 24666888877665543
No 450
>PRK07454 short chain dehydrogenase; Provisional
Probab=23.12 E-value=1.7e+02 Score=24.18 Aligned_cols=42 Identities=17% Similarity=-0.005 Sum_probs=30.2
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhh
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGS 193 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~ 193 (224)
+.++++|+|+ |..|+.-++.+...-. +.+.+|++++.+.+.+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAA 48 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4567888885 8889888888876432 4777888877665543
No 451
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.12 E-value=1.2e+02 Score=27.46 Aligned_cols=53 Identities=6% Similarity=-0.038 Sum_probs=31.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh----CC--cEE-EeCCcchHHhhhhccCCCcccccccCcEEEEecccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS----LK--LKK-YNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v----~~--i~v-~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~ 216 (224)
..++++|||-+..=-.=+.+++.- ++ +.+ .+++. . ..+.+++|||||++.+..
T Consensus 158 ~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t~-~-----------l~~~~~~ADIvI~Avg~~ 217 (295)
T PRK14174 158 KGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATK-D-----------IPSYTRQADILIAAIGKA 217 (295)
T ss_pred CCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCch-h-----------HHHHHHhCCEEEEecCcc
Confidence 578999999776543333333332 23 222 22221 1 456788999999998654
No 452
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=23.02 E-value=2.4e+02 Score=25.09 Aligned_cols=40 Identities=10% Similarity=0.056 Sum_probs=29.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhh
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVT 191 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~ 191 (224)
...+++|+|+|..+...++.....-- +.+..+++++.+.+
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~ 206 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMM 206 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence 46799999999999998887666432 35667777776533
No 453
>PRK07236 hypothetical protein; Provisional
Probab=22.86 E-value=1.5e+02 Score=26.86 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=27.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLT 186 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~ 186 (224)
....|+|||+|.-|.....+|... .+ .|+.|.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence 457899999999999999888774 44 88887754
No 454
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=22.82 E-value=3.6e+02 Score=21.80 Aligned_cols=63 Identities=19% Similarity=0.089 Sum_probs=32.5
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC--C--c--EEEeCCcchHHhhhh-----ccCCC------c----ccccccCcEEE
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL--K--L--KKYNRGLTEGTVTGS-----TKKGM------A----TEDVITAKLIY 210 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~--i--~v~~R~~~~a~~~a~-----~~~g~------~----~~~v~~advvv 210 (224)
..+.+.++|.|.=|---+-+...+. . + .++.+..+.-+.+.. +..|. . ...+..+|+||
T Consensus 25 ~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~dlII 104 (169)
T PF03853_consen 25 GPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPADLII 104 (169)
T ss_dssp T-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCESEEE
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccccEEE
Confidence 7899999999987755555544442 2 2 446554333333222 11222 1 12234799999
Q ss_pred Eecc
Q psy13395 211 DKYQ 214 (224)
Q Consensus 211 ~~~~ 214 (224)
.+--
T Consensus 105 Dal~ 108 (169)
T PF03853_consen 105 DALF 108 (169)
T ss_dssp EES-
T ss_pred Eecc
Confidence 8753
No 455
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=22.67 E-value=2.1e+02 Score=23.82 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=28.4
Q ss_pred CccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHH
Q psy13395 126 GTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAY 166 (224)
Q Consensus 126 g~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~ 166 (224)
......|--+...+++++ |+++ +.+.++|+|=|.-..
T Consensus 44 ~~~~gsmG~~lpaAiGa~-la~p---~~~vv~i~GDGsf~m 80 (205)
T cd02003 44 EYGYSCMGYEIAAGLGAK-LAKP---DREVYVLVGDGSYLM 80 (205)
T ss_pred CCCcchhhhHHHHHHHHH-HhCC---CCeEEEEEccchhhc
Confidence 344566777788888888 4667 789999999997665
No 456
>PRK08267 short chain dehydrogenase; Provisional
Probab=22.51 E-value=1.6e+02 Score=24.62 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=25.0
Q ss_pred cEEEEEe-cCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhh
Q psy13395 154 LVLAIMG-SGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGS 193 (224)
Q Consensus 154 ~~l~iiG-aG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~ 193 (224)
++++|.| +|..|+.-++.++..-- +.+++|++++.+.+.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAA 43 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 3566666 46777777777665432 3666777777666644
No 457
>PRK06101 short chain dehydrogenase; Provisional
Probab=22.50 E-value=1.5e+02 Score=24.70 Aligned_cols=38 Identities=11% Similarity=0.005 Sum_probs=19.1
Q ss_pred EEEEEe-cCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhh
Q psy13395 155 VLAIMG-SGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTG 192 (224)
Q Consensus 155 ~l~iiG-aG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a 192 (224)
+++|.| +|..|+.-++.+...- .+.+.+|++++.+.++
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~ 42 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELH 42 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence 344555 4566665555555421 1255566555554443
No 458
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=22.40 E-value=1.5e+02 Score=28.02 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=25.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGL 185 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~ 185 (224)
..++++|||+|+.|..-...+.... .+.||.+.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 5679999999999988877776642 247776653
No 459
>PRK06392 homoserine dehydrogenase; Provisional
Probab=22.37 E-value=1.4e+02 Score=27.41 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=19.0
Q ss_pred EEEEEecCHhHHHHHHHHHHh
Q psy13395 155 VLAIMGSGAQAYIHAKAFHAS 175 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v 175 (224)
+|+|+|+|.+|+.-++.+..-
T Consensus 2 rVaIiGfG~VG~~va~~L~~~ 22 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSR 22 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhC
Confidence 689999999999999998774
No 460
>PRK06057 short chain dehydrogenase; Provisional
Probab=22.33 E-value=1.9e+02 Score=24.25 Aligned_cols=41 Identities=15% Similarity=0.099 Sum_probs=28.6
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHHhCC-cEEEeCCcchHHhhh
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHASLK-LKKYNRGLTEGTVTG 192 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a 192 (224)
+.+++.|+|+ |..|...++.+.+.-. +.+.+|+.++.+...
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 3567888888 8888888888876432 366678776655443
No 461
>PRK05884 short chain dehydrogenase; Provisional
Probab=22.22 E-value=1.7e+02 Score=24.29 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=27.0
Q ss_pred EEEEEec-CHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhh
Q psy13395 155 VLAIMGS-GAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGS 193 (224)
Q Consensus 155 ~l~iiGa-G~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~ 193 (224)
+++|.|+ |..|+..++.+...- .+.+.+|+.++.+.+++
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3667765 788888888887542 24667888877766654
No 462
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=22.04 E-value=98 Score=29.76 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=26.6
Q ss_pred CCcEEEeCCcchHHhhhhc-c--CCC----cccccc----cCcEEEEeccc
Q psy13395 176 LKLKKYNRGLTEGTVTGST-K--KGM----ATEDVI----TAKLIYDKYQA 215 (224)
Q Consensus 176 ~~i~v~~R~~~~a~~~a~~-~--~g~----~~~~v~----~advvv~~~~~ 215 (224)
+++.+|||++++.++|.+. . .|. ..++++ .+|+|++...+
T Consensus 14 ~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~ 64 (459)
T PRK09287 14 YTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKA 64 (459)
T ss_pred CeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCC
Confidence 3459999999999999874 2 122 333333 37999876543
No 463
>PRK10083 putative oxidoreductase; Provisional
Probab=21.97 E-value=2.8e+02 Score=24.20 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=39.6
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhc--------cCCCccccc----ccCcEEEEeccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGST--------KKGMATEDV----ITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~--------~~g~~~~~v----~~advvv~~~~~ 215 (224)
...+++|+|+|..+...++.....++. .+.++++++.+.+.+- ......+.+ .+.|+|+.+++.
T Consensus 160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g~ 238 (339)
T PRK10083 160 EQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAACH 238 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCCC
Confidence 467999999999999988877655554 4456766665443220 001111222 246799998774
No 464
>KOG2711|consensus
Probab=21.90 E-value=2e+02 Score=26.98 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=45.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHh---CC-----cEEEeCCcch---HHhhhh----ccC------CC-----------c
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHAS---LK-----LKKYNRGLTE---GTVTGS----TKK------GM-----------A 199 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v---~~-----i~v~~R~~~~---a~~~a~----~~~------g~-----------~ 199 (224)
++.+++|||+|.=|..-.+.+..- ++ +++|-+..+- ++.|.+ +.+ |+ .
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 689999999999888777766543 22 1888776543 244544 221 32 4
Q ss_pred ccccccCcEEEEeccccc
Q psy13395 200 TEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 200 ~~~v~~advvv~~~~~~~ 217 (224)
.+++.+|||+|-..-.|-
T Consensus 100 ~ea~~dADilvf~vPhQf 117 (372)
T KOG2711|consen 100 VEAAKDADILVFVVPHQF 117 (372)
T ss_pred HHHhccCCEEEEeCChhh
Confidence 778889999998877664
No 465
>PRK09186 flagellin modification protein A; Provisional
Probab=21.73 E-value=1.9e+02 Score=24.00 Aligned_cols=40 Identities=13% Similarity=-0.049 Sum_probs=27.0
Q ss_pred CcEEEEEec-CHhHHHHHHHHHHhCC-cEEEeCCcchHHhhh
Q psy13395 153 DLVLAIMGS-GAQAYIHAKAFHASLK-LKKYNRGLTEGTVTG 192 (224)
Q Consensus 153 ~~~l~iiGa-G~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a 192 (224)
.++++|.|+ |.+|+..++.+.+.-- +.+.+|++++++.+.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~ 45 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELL 45 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHH
Confidence 467777775 7888888888876432 366678777765543
No 466
>PRK05872 short chain dehydrogenase; Provisional
Probab=21.70 E-value=1.9e+02 Score=25.10 Aligned_cols=41 Identities=17% Similarity=0.102 Sum_probs=26.4
Q ss_pred CcEEEEEec-CHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhh
Q psy13395 153 DLVLAIMGS-GAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGS 193 (224)
Q Consensus 153 ~~~l~iiGa-G~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~ 193 (224)
.++++|.|+ |..|+...+.+...-- +.+.+|+.++.+.+++
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~ 51 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAA 51 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 456777774 6777777777765321 3667777777666554
No 467
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=21.63 E-value=1.6e+02 Score=24.35 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=26.0
Q ss_pred cEEEEEe-cCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhh
Q psy13395 154 LVLAIMG-SGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGS 193 (224)
Q Consensus 154 ~~l~iiG-aG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~ 193 (224)
++++|.| +|.+|+..++.+.+.- .+.+.+|+.++.+.+.+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~ 43 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAK 43 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3577777 5788888887776532 24667777766655543
No 468
>PRK06182 short chain dehydrogenase; Validated
Probab=21.49 E-value=1.9e+02 Score=24.58 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=29.7
Q ss_pred CcEEEEEec-CHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhh
Q psy13395 153 DLVLAIMGS-GAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGS 193 (224)
Q Consensus 153 ~~~l~iiGa-G~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~ 193 (224)
.++++|.|+ |.+|+..++.+...- .+.+.+|++++.+++..
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~ 45 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS 45 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 467888885 889999888887642 23667888887766643
No 469
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=21.43 E-value=2.6e+02 Score=25.38 Aligned_cols=54 Identities=7% Similarity=-0.006 Sum_probs=33.7
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--c-EEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--L-KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i-~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~ 217 (224)
.-++++|||-+..--.=+-.++...+ + .+.+++++ ..+-+++|||||++.+..|
T Consensus 155 ~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~------------l~~~~k~ADIvv~AvG~p~ 211 (283)
T COG0190 155 RGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKD------------LASITKNADIVVVAVGKPH 211 (283)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCC------------HHHHhhhCCEEEEecCCcc
Confidence 68899999988754333333333343 3 44444422 2344668999999998776
No 470
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=21.23 E-value=1.1e+02 Score=23.48 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=17.6
Q ss_pred eEEEEEEEeCCCCcEEEEEeC
Q psy13395 106 VLATVLLYNTDNGKLKVVMEG 126 (224)
Q Consensus 106 ~~g~i~L~D~~TG~p~AllDg 126 (224)
.+--++|+|..++.|+++|+-
T Consensus 56 ~~vDFvv~d~~~~~p~~vIEl 76 (126)
T PF10881_consen 56 KHVDFVVCDKRDGRPVAVIEL 76 (126)
T ss_pred CCccEEEEECCCCcEEEEEEe
Confidence 456689999999999999953
No 471
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=21.14 E-value=1.9e+02 Score=25.60 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=38.9
Q ss_pred CcEEEEEec-CHhHHHHHHHHHHhC---CcEEEeCCcchHHhhhhcc---------CCC-----cccccccCcEEEEecc
Q psy13395 153 DLVLAIMGS-GAQAYIHAKAFHASL---KLKKYNRGLTEGTVTGSTK---------KGM-----ATEDVITAKLIYDKYQ 214 (224)
Q Consensus 153 ~~~l~iiGa-G~QA~~hl~a~~~v~---~i~v~~R~~~~a~~~a~~~---------~g~-----~~~~v~~advvv~~~~ 214 (224)
.++++|.|+ |..|+..++.+.... .+.+.+|+..+.+.+.+.. ..+ ..+.+.+.|+||-.-+
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~Ag 83 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAAA 83 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEECcc
Confidence 357888885 999999999998763 2466777766543332210 111 2334456899987654
No 472
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=21.10 E-value=1.1e+02 Score=27.57 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=25.5
Q ss_pred EEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcc
Q psy13395 155 VLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLT 186 (224)
Q Consensus 155 ~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~ 186 (224)
.|+|||+|+-|..-..++...- .+.|+.|.++
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 4899999999999999988762 3378887654
No 473
>PRK07774 short chain dehydrogenase; Provisional
Probab=21.03 E-value=2.1e+02 Score=23.62 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=28.3
Q ss_pred CcEEEEEec-CHhHHHHHHHHHHhCC-cEEEeCCcchHHhhh
Q psy13395 153 DLVLAIMGS-GAQAYIHAKAFHASLK-LKKYNRGLTEGTVTG 192 (224)
Q Consensus 153 ~~~l~iiGa-G~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a 192 (224)
.++++|.|+ |..|+.-.+.+...-. +.+.+|++++.+.+.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~ 47 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVA 47 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 467888886 8888888888877432 367788776654443
No 474
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=20.99 E-value=2.1e+02 Score=23.71 Aligned_cols=37 Identities=8% Similarity=0.064 Sum_probs=27.1
Q ss_pred cchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHH
Q psy13395 128 EITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIH 168 (224)
Q Consensus 128 ~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~h 168 (224)
....|=-+..++++++ |+.+ +.++++|+|=|.--...
T Consensus 55 ~~GsmG~~lpaaiGa~-la~p---~~~vv~i~GDG~f~m~~ 91 (202)
T cd02006 55 QAGPLGWTVPAALGVA-AADP---DRQVVALSGDYDFQFMI 91 (202)
T ss_pred CccchhhhhHHHHhHH-hhCC---CCeEEEEEeChHhhccH
Confidence 4455666777788886 5667 78999999999866554
No 475
>PRK09897 hypothetical protein; Provisional
Probab=20.96 E-value=1.4e+02 Score=29.17 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=23.6
Q ss_pred cEEEEEecCHhHHHHHHHHHHhC-C--cEEEeCCc
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASL-K--LKKYNRGL 185 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~-~--i~v~~R~~ 185 (224)
++|+|||+|+-|-+-+..+.... + |.|+.++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 47999999999999888887643 2 36666543
No 476
>PRK08265 short chain dehydrogenase; Provisional
Probab=20.86 E-value=2e+02 Score=24.25 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=29.4
Q ss_pred CcEEEEEec-CHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhh
Q psy13395 153 DLVLAIMGS-GAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGS 193 (224)
Q Consensus 153 ~~~l~iiGa-G~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~ 193 (224)
.++++|.|+ |.+|+..++.+...-- +.+.+|+.++.+++++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAA 48 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 467888885 8888888888876432 3677888777666554
No 477
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=20.80 E-value=1.9e+02 Score=23.93 Aligned_cols=41 Identities=12% Similarity=0.010 Sum_probs=29.4
Q ss_pred CcEEEEEe-cCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhh
Q psy13395 153 DLVLAIMG-SGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGS 193 (224)
Q Consensus 153 ~~~l~iiG-aG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~ 193 (224)
.++++|.| +|..|..-++.+...- .+.+.+|++++.+.+..
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 46 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAE 46 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 36788888 6889988888887642 23777888877666543
No 478
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=20.78 E-value=2.4e+02 Score=25.42 Aligned_cols=60 Identities=18% Similarity=0.135 Sum_probs=37.9
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHHhCCc--EEEeCCcch--------HHhhhhccCC--C-----cccccccCcEEEEec
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHASLKL--KKYNRGLTE--------GTVTGSTKKG--M-----ATEDVITAKLIYDKY 213 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~v~~i--~v~~R~~~~--------a~~~a~~~~g--~-----~~~~v~~advvv~~~ 213 (224)
+..+|+++|- +..++..+.++.. +++ .+..+..-. ++.+++. .| + ..+++.+||||++..
T Consensus 147 ~g~~v~~vGd~~~v~~Sl~~~l~~-~g~~v~~~~P~~~~~~~~~~~~~~~~~~~-~g~~~~~~~d~~~a~~~aDvvy~~~ 224 (304)
T TIGR00658 147 KGVKVVYVGDGNNVCNSLMLAGAK-LGMDVVVATPEGYEPDADIVKKAQEIAKE-NGGSVELTHDPVEAVKGADVIYTDV 224 (304)
T ss_pred CCcEEEEEeCCCchHHHHHHHHHH-cCCEEEEECCchhcCCHHHHHHHHHHHHH-cCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 6789999998 6788888887654 565 444432111 1222332 22 1 467899999999963
No 479
>PRK08264 short chain dehydrogenase; Validated
Probab=20.67 E-value=2e+02 Score=23.63 Aligned_cols=39 Identities=18% Similarity=0.075 Sum_probs=29.1
Q ss_pred CCcEEEEEe-cCHhHHHHHHHHHHhC--CcEEEeCCcchHHh
Q psy13395 152 KDLVLAIMG-SGAQAYIHAKAFHASL--KLKKYNRGLTEGTV 190 (224)
Q Consensus 152 ~~~~l~iiG-aG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~ 190 (224)
..++++|+| +|..|++.++.+...- .+.+.+|+.++.+.
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~ 46 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD 46 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh
Confidence 356788888 5999999999888654 34777888776654
No 480
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=20.66 E-value=1.3e+02 Score=29.31 Aligned_cols=58 Identities=22% Similarity=0.437 Sum_probs=36.9
Q ss_pred CeEEEEEEeecCCCCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHh
Q psy13395 85 DSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQ 164 (224)
Q Consensus 85 ~~~GvK~vs~~p~N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~Q 164 (224)
+.||+|++ .|++ ..+.++|+|++||.++ .-..++.+|- +-+-.. .-.-|+|-|++.-
T Consensus 361 p~f~Lkv~--d~~~-------~ls~LvllD~~tg~~l---~~S~~~~Ir~--------r~~~~~---~~~~vaI~g~~G~ 417 (489)
T PF05262_consen 361 PVFGLKVL--DPNH-------YLSELVLLDSDTGDTL---KRSPVNGIRG--------RTFYER---EDDLVAIAGCSGN 417 (489)
T ss_pred ceeEEEEe--cCCC-------cceeEEEEeCCCCcee---cccccceecc--------ceeEEc---CCCEEEEeccCCc
Confidence 46899998 3443 4589999999999875 3344444443 433322 3446677777554
Q ss_pred H
Q psy13395 165 A 165 (224)
Q Consensus 165 A 165 (224)
|
T Consensus 418 ~ 418 (489)
T PF05262_consen 418 A 418 (489)
T ss_pred h
Confidence 3
No 481
>PRK07074 short chain dehydrogenase; Provisional
Probab=20.66 E-value=1.9e+02 Score=24.09 Aligned_cols=40 Identities=13% Similarity=0.102 Sum_probs=27.0
Q ss_pred cEEEEEec-CHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhh
Q psy13395 154 LVLAIMGS-GAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGS 193 (224)
Q Consensus 154 ~~l~iiGa-G~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~ 193 (224)
++++|+|+ |..|+.-++.|.... .+.+.+|++++.+.+.+
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFAD 44 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46777775 778888888776543 23667787777666554
No 482
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=20.64 E-value=1.6e+02 Score=27.03 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=29.0
Q ss_pred cEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcch-HHhhhh
Q psy13395 154 LVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTE-GTVTGS 193 (224)
Q Consensus 154 ~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~-a~~~a~ 193 (224)
++|+|||.|..+++-.++.... .+ .+++++++. +..+++
T Consensus 3 ~~igilG~Gql~~ml~~aa~~l-G~~v~~~d~~~~~pa~~~ad 44 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPL-GYKVIVLDPDPDSPAAQVAD 44 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCCCCchhHhCc
Confidence 5799999999999988887764 44 777776543 555554
No 483
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.57 E-value=2e+02 Score=23.58 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=29.6
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhh
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGS 193 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~ 193 (224)
..++++|+|+ |..|+.-++.+...- .+.+.+|++++.+.+..
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAA 47 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3467888885 888888888877542 24777888877665543
No 484
>PRK05867 short chain dehydrogenase; Provisional
Probab=20.54 E-value=2e+02 Score=23.98 Aligned_cols=40 Identities=15% Similarity=-0.036 Sum_probs=22.7
Q ss_pred CcEEEEEec-CHhHHHHHHHHHHhCC-cEEEeCCcchHHhhh
Q psy13395 153 DLVLAIMGS-GAQAYIHAKAFHASLK-LKKYNRGLTEGTVTG 192 (224)
Q Consensus 153 ~~~l~iiGa-G~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a 192 (224)
.++++|.|+ |..|+...+.+...-. +.+.+|+.++.++++
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 50 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLA 50 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 456666665 5666666666655321 355566666555554
No 485
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.41 E-value=2.1e+02 Score=23.43 Aligned_cols=40 Identities=15% Similarity=0.028 Sum_probs=26.7
Q ss_pred CcEEEEEec-CHhHHHHHHHHHHhCC-cEEEeCCcchHHhhh
Q psy13395 153 DLVLAIMGS-GAQAYIHAKAFHASLK-LKKYNRGLTEGTVTG 192 (224)
Q Consensus 153 ~~~l~iiGa-G~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a 192 (224)
.++++|.|+ |..+...++.+.+.-. +.+.+|++++.+...
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~ 46 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAV 46 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 457788886 8888888887766422 366677776654443
No 486
>PRK07102 short chain dehydrogenase; Provisional
Probab=20.41 E-value=2e+02 Score=23.85 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=21.0
Q ss_pred EEEEEe-cCHhHHHHHHHHHHhCC-cEEEeCCcchHHhh
Q psy13395 155 VLAIMG-SGAQAYIHAKAFHASLK-LKKYNRGLTEGTVT 191 (224)
Q Consensus 155 ~l~iiG-aG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~ 191 (224)
++.|.| +|..|+..++.+.+.-. +.+.+|++++.+.+
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~ 41 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARDVERLERL 41 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH
Confidence 455666 46677666666665321 25556666555443
No 487
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=20.36 E-value=2.5e+02 Score=24.48 Aligned_cols=76 Identities=11% Similarity=0.118 Sum_probs=43.1
Q ss_pred EEEEEEEeCCCCcEEEEEeCccchhhhhhh--hhHHh-hhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCC---cEE
Q psy13395 107 LATVLLYNTDNGKLKVVMEGTEITKWRTAA--ASVVA-TKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLK---LKK 180 (224)
Q Consensus 107 ~g~i~L~D~~TG~p~AllDg~~lT~~RTaA--~Sala-a~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~---i~v 180 (224)
..-+.+++.....-..++||..-+.-+--- --.++ ...+..+ +++++++||+|.=+.. +.++...+ +.+
T Consensus 27 ~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~y~e~l~~~~l~~~~---~p~~VL~iG~G~G~~~--~~ll~~~~~~~v~~ 101 (270)
T TIGR00417 27 FQDLEIFETEEFGNVLVLDGVVQTTERDEFIYHEMIAHVPLFTHP---NPKHVLVIGGGDGGVL--REVLKHKSVEKATL 101 (270)
T ss_pred CeeEEEEEcCCCceEEEECCcccccCchHHHHHHHhhhhHhhcCC---CCCEEEEEcCCchHHH--HHHHhCCCcceEEE
Confidence 356788888776566678887665433211 12222 1234456 7889999999875432 22222222 356
Q ss_pred EeCCcch
Q psy13395 181 YNRGLTE 187 (224)
Q Consensus 181 ~~R~~~~ 187 (224)
...+++-
T Consensus 102 veid~~v 108 (270)
T TIGR00417 102 VDIDEKV 108 (270)
T ss_pred EeCCHHH
Confidence 6666543
No 488
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=20.32 E-value=1.8e+02 Score=26.41 Aligned_cols=63 Identities=11% Similarity=0.114 Sum_probs=38.0
Q ss_pred cEEEEEec-CHhHHHHHHHHHHh-CCc---EEEeCCcchHHhhhh-----ccCCCcccccccCcEEEEecccc
Q psy13395 154 LVLAIMGS-GAQAYIHAKAFHAS-LKL---KKYNRGLTEGTVTGS-----TKKGMATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 154 ~~l~iiGa-G~QA~~hl~a~~~v-~~i---~v~~R~~~~a~~~a~-----~~~g~~~~~v~~advvv~~~~~~ 216 (224)
.+++|+|+ |..|+.-++.+... +|. ....+..+..+.+.- ....+...++.+.|+||.+++..
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g 74 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS 74 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH
Confidence 46889985 77778888877653 453 444444433333321 11122334566899999998764
No 489
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=20.27 E-value=1.7e+02 Score=29.09 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=26.9
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGL 185 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~ 185 (224)
..++|+|||+|+-|.+.+..+...- .+.||.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5789999999999999888877643 247787654
No 490
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=20.17 E-value=1.6e+02 Score=31.42 Aligned_cols=33 Identities=15% Similarity=0.035 Sum_probs=24.5
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCC
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRG 184 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~ 184 (224)
...+|+|+|+|..|-.-++.+...-- +.|++.+
T Consensus 23 ~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d 57 (1008)
T TIGR01408 23 AKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTE 57 (1008)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35688999999999999998766532 3666543
No 491
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=20.15 E-value=1.9e+02 Score=26.41 Aligned_cols=54 Identities=9% Similarity=-0.029 Sum_probs=33.0
Q ss_pred cEEEEEe-cCHhHHHHHHHHHHhCC-c---EEEeCCcchHHhhhhccCCCcccccccCcEEEEecccc
Q psy13395 154 LVLAIMG-SGAQAYIHAKAFHASLK-L---KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQ 216 (224)
Q Consensus 154 ~~l~iiG-aG~QA~~hl~a~~~v~~-i---~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~ 216 (224)
.+++|+| +|..|..-++.+.. +| + .+.++... .. -...+...++|+|+.++...
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~-hp~~~l~~~~s~~~~---~~-----~~~~~~~~~~DvvFlalp~~ 61 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAG-RSDIELLSIPEAKRK---DA-----AARRELLNAADVAILCLPDD 61 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhc-CCCeEEEEEecCCCC---cc-----cCchhhhcCCCEEEECCCHH
Confidence 4789999 78888888887655 55 3 33333221 11 11223345789999888554
No 492
>PRK06196 oxidoreductase; Provisional
Probab=20.09 E-value=2e+02 Score=25.24 Aligned_cols=40 Identities=8% Similarity=-0.039 Sum_probs=23.0
Q ss_pred CcEEEEEec-CHhHHHHHHHHHHhC-CcEEEeCCcchHHhhh
Q psy13395 153 DLVLAIMGS-GAQAYIHAKAFHASL-KLKKYNRGLTEGTVTG 192 (224)
Q Consensus 153 ~~~l~iiGa-G~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a 192 (224)
.++++|.|+ |..|++.++.+...- .+.+.+|++++++.+.
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~ 67 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREAL 67 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 356666665 566776666665532 1355566666655443
No 493
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=20.03 E-value=3.4e+02 Score=22.18 Aligned_cols=64 Identities=13% Similarity=0.101 Sum_probs=37.4
Q ss_pred CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhcc--C--CC----cccc-----cccCcEEEEeccc
Q psy13395 152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTK--K--GM----ATED-----VITAKLIYDKYQA 215 (224)
Q Consensus 152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~--~--g~----~~~~-----v~~advvv~~~~~ 215 (224)
...+++|+|+|..+..-++.....-. +.+..+++++.+.+.+.. . .. ..+. -...|+|+...+.
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~ 211 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGG 211 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCC
Confidence 57789999999977776665554332 366677766655443210 0 00 1111 1468999987654
No 494
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=20.01 E-value=1.8e+02 Score=26.71 Aligned_cols=66 Identities=8% Similarity=0.013 Sum_probs=38.4
Q ss_pred CCcEEEEEec-CHhHHHHHHHHHHh-CCc----EEEeC-CcchHHhhhhc---cCCCcccccccCcEEEEeccccc
Q psy13395 152 KDLVLAIMGS-GAQAYIHAKAFHAS-LKL----KKYNR-GLTEGTVTGST---KKGMATEDVITAKLIYDKYQAQH 217 (224)
Q Consensus 152 ~~~~l~iiGa-G~QA~~hl~a~~~v-~~i----~v~~R-~~~~a~~~a~~---~~g~~~~~v~~advvv~~~~~~~ 217 (224)
+..+++|+|+ |..|+..++.+..- +|. .+.++ +..+.-.+... .+.+..+++.+.|+||.++....
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~ 81 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSI 81 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHH
Confidence 4678999985 67777777777542 553 33333 22222222111 11234566778999999887653
Done!