Your job contains 1 sequence.
>psy13395
MSSSTCGSAISSTQPNQPPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFM
RIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKL
KVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK
YNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQHSNCSSPQ
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13395
(224 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
MGI|MGI:102675 - symbol:Crym "crystallin, mu" species:100... 211 2.9e-22 2
RGD|620943 - symbol:Crym "crystallin, mu" species:10116 "... 207 7.6e-22 2
FB|FBgn0030799 - symbol:CG4872 species:7227 "Drosophila m... 229 2.1e-21 2
UNIPROTKB|Q14894 - symbol:CRYM "Thiomorpholine-carboxylat... 202 3.6e-21 2
UNIPROTKB|Q2KHX6 - symbol:CRYM "Thiomorpholine-carboxylat... 200 6.5e-21 2
UNIPROTKB|F1RPC8 - symbol:CRYM "Uncharacterized protein" ... 202 9.5e-21 2
UNIPROTKB|E2RCL5 - symbol:CRYM "Uncharacterized protein" ... 195 2.9e-20 2
UNIPROTKB|H9KVC2 - symbol:CRYM "Thiomorpholine-carboxylat... 191 3.6e-20 2
UNIPROTKB|E1C5W9 - symbol:CRYM "Uncharacterized protein" ... 192 7.0e-20 2
UNIPROTKB|Q28488 - symbol:CRYM "Thiomorpholine-carboxylat... 188 2.9e-19 2
ZFIN|ZDB-GENE-070112-1782 - symbol:crym "crystallin, mu" ... 189 8.3e-19 2
UNIPROTKB|I3L325 - symbol:CRYM "Thiomorpholine-carboxylat... 191 4.2e-15 1
UNIPROTKB|I3NI53 - symbol:CRYM "Thiomorpholine-carboxylat... 160 8.2e-12 1
UNIPROTKB|O28608 - symbol:ala "Alanine dehydrogenase" spe... 142 3.2e-11 2
DICTYBASE|DDB_G0292894 - symbol:DDB_G0292894 "putative or... 142 5.8e-11 2
UNIPROTKB|Q5LLT9 - symbol:SPO3832 "Ornithine cyclodeamina... 153 1.4e-10 1
TIGR_CMR|SPO_3832 - symbol:SPO_3832 "ornithine cyclodeami... 153 1.4e-10 1
UNIPROTKB|Q81UH0 - symbol:BAS0854 "Ornithine cyclodeamina... 139 6.6e-10 2
TIGR_CMR|BA_0902 - symbol:BA_0902 "ornithine cyclodeamina... 139 6.6e-10 2
POMBASE|SPAP11E10.01 - symbol:SPAP11E10.01 "ornithine cyc... 143 1.5e-08 1
UNIPROTKB|Q5LUB3 - symbol:SPO1141 "Ornithine cyclodeamina... 142 2.4e-08 1
TIGR_CMR|SPO_1141 - symbol:SPO_1141 "ectoine utilization ... 142 2.4e-08 1
TAIR|locus:2176882 - symbol:AT5G52810 species:3702 "Arabi... 126 8.6e-08 2
TIGR_CMR|CPS_1455 - symbol:CPS_1455 "putative ornithine c... 133 4.8e-07 1
UNIPROTKB|Q5LL80 - symbol:Q5LL80 "Ornithine cyclodeaminas... 126 3.6e-06 1
TIGR_CMR|SPO_A0147 - symbol:SPO_A0147 "ornithine cyclodea... 126 3.6e-06 1
TIGR_CMR|CPS_2747 - symbol:CPS_2747 "putative ornithine c... 125 5.8e-06 1
UNIPROTKB|Q0BZ13 - symbol:HNE_2590 "Ornithine cyclodeamin... 115 1.2e-05 2
UNIPROTKB|Q5LUS6 - symbol:SPO0977 "Ornithine cyclodeamina... 122 1.6e-05 1
TIGR_CMR|SPO_0977 - symbol:SPO_0977 "ornithine cyclodeami... 122 1.6e-05 1
UNIPROTKB|Q5LLV0 - symbol:SPO3821 "Ornithine cyclodeamina... 110 0.00011 2
TIGR_CMR|SPO_3821 - symbol:SPO_3821 "ornithine cyclodeami... 110 0.00011 2
CGD|CAL0004427 - symbol:orf19.4735 species:5476 "Candida ... 111 0.00038 1
UNIPROTKB|Q5APN1 - symbol:CaO19.12197 "Putative uncharact... 111 0.00038 1
UNIPROTKB|Q47UJ8 - symbol:CPS_4886 "Putative ornithine cy... 110 0.00049 1
TIGR_CMR|CPS_4886 - symbol:CPS_4886 "putative ornithine c... 110 0.00049 1
>MGI|MGI:102675 [details] [associations]
symbol:Crym "crystallin, mu" species:10090 "Mus musculus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0007605 "sensory perception of sound"
evidence=ISO] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0042403 "thyroid hormone metabolic process" evidence=IMP]
[GO:0042562 "hormone binding" evidence=IMP] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0047127
"thiomorpholine-carboxylate dehydrogenase activity" evidence=IEA]
[GO:0050661 "NADP binding" evidence=ISO] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0070324 "thyroid
hormone binding" evidence=ISO] [GO:0070327 "thyroid hormone
transport" evidence=ISO] InterPro:IPR016040 Pfam:PF02423
MGI:MGI:102675 GO:GO:0005739 GO:GO:0005886 GO:GO:0005634
GO:GO:0003714 Gene3D:3.40.50.720 GO:GO:0050661 GO:GO:0042562
GO:GO:0000122 GO:GO:0007605 GO:GO:0070324 eggNOG:COG2423
Gene3D:3.30.1780.10 InterPro:IPR003462 InterPro:IPR023401
PIRSF:PIRSF001439 CTD:1428 HOGENOM:HOG000137263 HOVERGEN:HBG005408
OMA:MKEAVLY OrthoDB:EOG454900 GO:GO:0047127 GO:GO:0042403
GO:GO:0070327 EMBL:AF039391 EMBL:BC045159 IPI:IPI00120030
RefSeq:NP_057878.1 UniGene:Mm.9114 ProteinModelPortal:O54983
SMR:O54983 IntAct:O54983 STRING:O54983 PhosphoSite:O54983
PaxDb:O54983 PRIDE:O54983 Ensembl:ENSMUST00000033198 GeneID:12971
KEGG:mmu:12971 InParanoid:O54983 ChiTaRS:CRYM NextBio:282732
Bgee:O54983 CleanEx:MM_CRYM Genevestigator:O54983
GermOnline:ENSMUSG00000030905 Uniprot:O54983
Length = 313
Score = 211 (79.3 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 65/186 (34%), Positives = 89/186 (47%)
Query: 19 PLFLSDEQVRDLLDWESL-VPAIXXXXXXXXXX---XXIQPARLFMRIPEVNGVLLSMPG 74
P FLS E+V+D L SL +P + +QP R + + + G L MP
Sbjct: 5 PAFLSAEEVQDHLRSSSLLIPPLEAALANFSKGPDGGVMQPVRTVVPVAKHRGFLGVMPA 64
Query: 75 YIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRT 134
Y ED+L K+VT + + +PS A+VLL++ NG L VM+G IT RT
Sbjct: 65 YSA-----AEDALTTKLVTFYEGHSNTAVPSHQASVLLFDPSNGSLLAVMDGNVITAKRT 119
Query: 135 AAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNRGLTEGTVT 191
AA S +ATK L D VL I+G+G QAY H + F K+ +NR
Sbjct: 120 AAVSAIATKLLKPPGSD---VLCILGAGVQAYSHYEIFTEQFSFKEVRMWNRTRENAEKF 176
Query: 192 GSTKKG 197
ST +G
Sbjct: 177 ASTVQG 182
Score = 62 (26.9 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 197 GMATEDVITAKLIYDKYQA 215
GMA ED++ AKL+YD + +
Sbjct: 293 GMAVEDLVAAKLVYDSWSS 311
>RGD|620943 [details] [associations]
symbol:Crym "crystallin, mu" species:10116 "Rattus norvegicus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003714 "transcription corepressor activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006839 "mitochondrial transport" evidence=IDA]
[GO:0007605 "sensory perception of sound" evidence=ISO] [GO:0009725
"response to hormone stimulus" evidence=IEP] [GO:0033280 "response
to vitamin D" evidence=IEP] [GO:0042403 "thyroid hormone metabolic
process" evidence=ISO] [GO:0042562 "hormone binding" evidence=ISO]
[GO:0042803 "protein homodimerization activity" evidence=ISO]
[GO:0047127 "thiomorpholine-carboxylate dehydrogenase activity"
evidence=IEA] [GO:0050661 "NADP binding" evidence=ISO] [GO:0070324
"thyroid hormone binding" evidence=ISO] [GO:0070327 "thyroid
hormone transport" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR016040 Pfam:PF02423 RGD:620943
GO:GO:0005829 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0009725
GO:GO:0006839 Gene3D:3.30.1780.10 InterPro:IPR003462
InterPro:IPR023401 PIRSF:PIRSF001439 GO:GO:0033280 CTD:1428
HOVERGEN:HBG005408 GO:GO:0047127 EMBL:Y17328 EMBL:BC088121
IPI:IPI00214448 RefSeq:NP_446407.1 UniGene:Rn.24561
ProteinModelPortal:Q9QYU4 SMR:Q9QYU4 World-2DPAGE:0004:Q9QYU4
PRIDE:Q9QYU4 GeneID:117024 KEGG:rno:117024 NextBio:619787
Genevestigator:Q9QYU4 Uniprot:Q9QYU4
Length = 313
Score = 207 (77.9 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
Identities = 59/166 (35%), Positives = 82/166 (49%)
Query: 19 PLFLSDEQVRDLLDWESL-VPAIXXXXXXXXXX---XXIQPARLFMRIPEVNGVLLSMPG 74
P FLS ++V+D L SL +P + +QP R + + + G L MP
Sbjct: 5 PAFLSADEVQDHLRSSSLLIPPLEAALANFSKGPDGGVMQPVRTVVPVAKHRGFLGVMPA 64
Query: 75 YIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRT 134
Y ED+L K+VT + + +PS A+VLL++ NG L VM+G IT RT
Sbjct: 65 YSA-----AEDALTTKLVTFYEGHSNNAVPSHQASVLLFDPSNGSLLAVMDGNVITAKRT 119
Query: 135 AAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK 180
AA S +ATK L D VL I+G+G QAY H + F K+
Sbjct: 120 AAVSAIATKFLKPPGSD---VLCILGAGVQAYSHYEIFTEQFSFKE 162
Score = 62 (26.9 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 197 GMATEDVITAKLIYDKYQA 215
GMA ED++ AKL+YD + +
Sbjct: 293 GMAVEDLVAAKLVYDSWSS 311
>FB|FBgn0030799 [details] [associations]
symbol:CG4872 species:7227 "Drosophila melanogaster"
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR016040
Pfam:PF02423 GO:GO:0000166 Gene3D:3.40.50.720 EMBL:AE014298
eggNOG:COG2423 Gene3D:3.30.1780.10 InterPro:IPR003462
InterPro:IPR023401 PIRSF:PIRSF001439 GeneTree:ENSGT00390000000237
EMBL:AY075313 RefSeq:NP_573173.2 UniGene:Dm.188 SMR:Q8SY58
EnsemblMetazoa:FBtr0074339 GeneID:32676 KEGG:dme:Dmel_CG4872
UCSC:CG4872-RA FlyBase:FBgn0030799 InParanoid:Q8SY58 OMA:ICIATYS
OrthoDB:EOG4KKWJH GenomeRNAi:32676 NextBio:779783 Uniprot:Q8SY58
Length = 355
Score = 229 (85.7 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 61/167 (36%), Positives = 95/167 (56%)
Query: 35 SLVPAIXXXXXXXXXXXXIQPARLFMRIPEVNG-VLLSMPGYI-----KRTGPDGE---- 84
+LV + QP R F+ + G VLL+MP Y+ + + GE
Sbjct: 30 ALVAIVKQNPETPSTSFAFQPKRTFIPCGKEPGKVLLTMPAYVGNYRLESSRDPGEVEHT 89
Query: 85 -DSLAIKVVTSFTDNKVKG--LPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVA 141
+LA K+VTSF+ N + LPS+ A VLL++ G+L +MEGT++T WRT +AS+VA
Sbjct: 90 HSTLACKLVTSFSGNPRRDPPLPSIHAHVLLFDNQTGQLSAIMEGTDLTTWRTVSASLVA 149
Query: 142 TKHL-FGRSG-----DKDLVLAIMGSGAQAYIHAKAFHASLKLKKYN 182
TK+L F R G ++++ +AI+G G Q +HA AF A+ ++++ N
Sbjct: 150 TKYLYFRRFGAQAEQERNINVAIVGCGVQGQLHAAAFCANFRVRQLN 196
Score = 38 (18.4 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 197 GMATEDVITAKLIYD 211
GMA+ED A+ + D
Sbjct: 332 GMASEDACVAQAVQD 346
>UNIPROTKB|Q14894 [details] [associations]
symbol:CRYM "Thiomorpholine-carboxylate dehydrogenase"
species:9606 "Homo sapiens" [GO:0047127 "thiomorpholine-carboxylate
dehydrogenase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0042403 "thyroid hormone metabolic process"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0070324
"thyroid hormone binding" evidence=IDA;IMP] [GO:0070327 "thyroid
hormone transport" evidence=IMP] [GO:0050661 "NADP binding"
evidence=IDA] [GO:0003714 "transcription corepressor activity"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR016040
Pfam:PF02423 GO:GO:0005739 GO:GO:0005886 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0042803 Gene3D:3.40.50.720
GO:GO:0050661 GO:GO:0000122 GO:GO:0007605 Orphanet:90635
GO:GO:0070324 eggNOG:COG2423 Gene3D:3.30.1780.10 InterPro:IPR003462
InterPro:IPR023401 PIRSF:PIRSF001439 DrugBank:DB00451 EMBL:AF001550
EMBL:CH471228 CTD:1428 HOGENOM:HOG000137263 HOVERGEN:HBG005408
OMA:MKEAVLY OrthoDB:EOG454900 GO:GO:0047127 GO:GO:0042403
GO:GO:0070327 EMBL:L02950 EMBL:U85772 EMBL:AF039397 EMBL:AF039392
EMBL:AF039393 EMBL:AF039394 EMBL:AF039395 EMBL:AF039396
EMBL:AK290852 EMBL:BX648477 EMBL:BC018061 IPI:IPI00000949
PIR:B46290 RefSeq:NP_001014444.1 RefSeq:NP_001879.1 UniGene:Hs.924
PDB:2I99 PDBsum:2I99 ProteinModelPortal:Q14894 SMR:Q14894
STRING:Q14894 PhosphoSite:Q14894 DMDM:2498259 PaxDb:Q14894
PRIDE:Q14894 DNASU:1428 Ensembl:ENST00000219599
Ensembl:ENST00000396023 Ensembl:ENST00000543948 GeneID:1428
KEGG:hsa:1428 UCSC:uc002dil.3 GeneCards:GC16M021269 HGNC:HGNC:2418
HPA:HPA019086 MIM:123740 neXtProt:NX_Q14894 PharmGKB:PA26924
InParanoid:Q14894 PhylomeDB:Q14894 EvolutionaryTrace:Q14894
GenomeRNAi:1428 NextBio:5823 Bgee:Q14894 CleanEx:HS_CRYM
Genevestigator:Q14894 GermOnline:ENSG00000103316 Uniprot:Q14894
Length = 314
Score = 202 (76.2 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 60/167 (35%), Positives = 81/167 (48%)
Query: 19 PLFLSDEQVRDLLDWESL-VPAIXXXXXXXXXX---XXIQPARLFMRIPEVNGVLLSMPG 74
P FLS +V + L SL +P + +QP R + + + G L MP
Sbjct: 5 PAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLGVMPA 64
Query: 75 YIKRTGPDGEDSLAIKVVTSFTDNKVKGL-PSVLATVLLYNTDNGKLKVVMEGTEITKWR 133
Y ED+L K+VT + D + + PS ATVLL+ NG L VM+G IT R
Sbjct: 65 YSA-----AEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKR 119
Query: 134 TAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK 180
TAA S +ATK L S + VL I+G+G QAY H + F K+
Sbjct: 120 TAAVSAIATKFLKPPSSE---VLCILGAGVQAYSHYEIFTEQFSFKE 163
Score = 62 (26.9 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 197 GMATEDVITAKLIYDKYQA 215
GMA ED + AKLIYD + +
Sbjct: 294 GMAVEDTVAAKLIYDSWSS 312
>UNIPROTKB|Q2KHX6 [details] [associations]
symbol:CRYM "Thiomorpholine-carboxylate dehydrogenase"
species:9913 "Bos taurus" [GO:0070327 "thyroid hormone transport"
evidence=IEA] [GO:0070324 "thyroid hormone binding" evidence=IEA]
[GO:0050661 "NADP binding" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0042403 "thyroid
hormone metabolic process" evidence=IEA] [GO:0007605 "sensory
perception of sound" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0047127 "thiomorpholine-carboxylate dehydrogenase activity"
evidence=IEA] InterPro:IPR016040 Pfam:PF02423 GO:GO:0005739
GO:GO:0005886 GO:GO:0005634 GO:GO:0003714 Gene3D:3.40.50.720
GO:GO:0050661 GO:GO:0000122 GO:GO:0007605 GO:GO:0070324
eggNOG:COG2423 Gene3D:3.30.1780.10 InterPro:IPR003462
InterPro:IPR023401 PIRSF:PIRSF001439 EMBL:BC112846 IPI:IPI00709805
RefSeq:NP_001039379.1 UniGene:Bt.2913 ProteinModelPortal:Q2KHX6
SMR:Q2KHX6 STRING:Q2KHX6 PRIDE:Q2KHX6 Ensembl:ENSBTAT00000012972
GeneID:505167 KEGG:bta:505167 CTD:1428 GeneTree:ENSGT00390000000237
HOGENOM:HOG000137263 HOVERGEN:HBG005408 InParanoid:Q2KHX6
OMA:MKEAVLY OrthoDB:EOG454900 NextBio:20867013 GO:GO:0047127
GO:GO:0042403 GO:GO:0070327 Uniprot:Q2KHX6
Length = 314
Score = 200 (75.5 bits), Expect = 6.5e-21, Sum P(2) = 6.5e-21
Identities = 59/159 (37%), Positives = 79/159 (49%)
Query: 19 PLFLSDEQVRDLLDWESLVPAIXXXXXXXXXXX----XIQPARLFMRIPEVNGVLLSMPG 74
P+FLS V+D L SL+ A +QP R + + + G L MP
Sbjct: 5 PVFLSAADVQDHLRSSSLLIAPLETALANFSSGPDGGVVQPVRTVVPVAKHRGFLGVMPA 64
Query: 75 YIKRTGPDGEDSLAIKVVTSFTDNKVKG-LPSVLATVLLYNTDNGKLKVVMEGTEITKWR 133
Y ED+L K+VT + D+ +PS ATVLL+ NG L VM+G IT R
Sbjct: 65 YSA-----AEDALTTKLVTFYEDHSATSTVPSHQATVLLFQPSNGSLLAVMDGNVITAKR 119
Query: 134 TAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAF 172
TAA S +ATK L + + VL I+G+G QAY H + F
Sbjct: 120 TAAVSAIATKFLKPPNSE---VLCILGAGVQAYSHYEVF 155
Score = 62 (26.9 bits), Expect = 6.5e-21, Sum P(2) = 6.5e-21
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 197 GMATEDVITAKLIYDKYQA 215
GMA ED++ AKL+YD + +
Sbjct: 294 GMAVEDMVAAKLVYDSWSS 312
>UNIPROTKB|F1RPC8 [details] [associations]
symbol:CRYM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070327 "thyroid hormone transport" evidence=IEA]
[GO:0070324 "thyroid hormone binding" evidence=IEA] [GO:0050661
"NADP binding" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0042403 "thyroid hormone metabolic
process" evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR016040
Pfam:PF02423 GO:GO:0005739 GO:GO:0005886 GO:GO:0005634
GO:GO:0003714 Gene3D:3.40.50.720 GO:GO:0050661 GO:GO:0000122
GO:GO:0007605 GO:GO:0070324 Gene3D:3.30.1780.10 InterPro:IPR003462
InterPro:IPR023401 PIRSF:PIRSF001439 GeneTree:ENSGT00390000000237
OMA:MKEAVLY GO:GO:0042403 GO:GO:0070327 EMBL:CU929608
RefSeq:XP_003124605.2 Ensembl:ENSSSCT00000008599 GeneID:100525333
KEGG:ssc:100525333 Uniprot:F1RPC8
Length = 314
Score = 202 (76.2 bits), Expect = 9.5e-21, Sum P(2) = 9.5e-21
Identities = 63/187 (33%), Positives = 89/187 (47%)
Query: 19 PLFLSDEQVRDLLDWESL-VPAIXXXXXXXXXX---XXIQPARLFMRIPEVNGVLLSMPG 74
P FLS V+D L SL +P + +QP R + + + +G L MP
Sbjct: 5 PAFLSAADVQDHLRSSSLLIPPLEAALANFSSGPDGGVVQPVRTVVPVAKHSGFLGVMPA 64
Query: 75 YIKRTGPDGEDSLAIKVVTSFTDNK-VKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWR 133
Y ED+L K+VT + ++ +PS ATVLL+ NG L VM+G IT R
Sbjct: 65 YSA-----AEDALTTKLVTFYEGHRSTSTVPSHQATVLLFEPSNGSLLAVMDGNVITAKR 119
Query: 134 TAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNRGLTEGTV 190
TAA S +ATK L + + VL I+G+G QAY H + F K+ +NR
Sbjct: 120 TAAVSAIATKFLKPPNSE---VLCILGAGVQAYSHYEVFTEQFSFKEVRIWNRTKENAEK 176
Query: 191 TGSTKKG 197
+T +G
Sbjct: 177 FANTVQG 183
Score = 58 (25.5 bits), Expect = 9.5e-21, Sum P(2) = 9.5e-21
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 197 GMATEDVITAKLIYDKYQA 215
GMA ED++ AKL+Y+ + +
Sbjct: 294 GMAVEDLVAAKLVYESWSS 312
>UNIPROTKB|E2RCL5 [details] [associations]
symbol:CRYM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070327 "thyroid hormone transport"
evidence=IEA] [GO:0070324 "thyroid hormone binding" evidence=IEA]
[GO:0050661 "NADP binding" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0042403 "thyroid
hormone metabolic process" evidence=IEA] [GO:0007605 "sensory
perception of sound" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR016040 Pfam:PF02423 GO:GO:0005739 GO:GO:0005886
GO:GO:0005634 GO:GO:0003714 Gene3D:3.40.50.720 GO:GO:0050661
GO:GO:0000122 GO:GO:0007605 GO:GO:0070324 Gene3D:3.30.1780.10
InterPro:IPR003462 InterPro:IPR023401 PIRSF:PIRSF001439 CTD:1428
GeneTree:ENSGT00390000000237 OMA:MKEAVLY GO:GO:0042403
GO:GO:0070327 EMBL:AAEX03004469 RefSeq:XP_850454.1
ProteinModelPortal:E2RCL5 Ensembl:ENSCAFT00000028250 GeneID:479818
KEGG:cfa:479818 NextBio:20854944 Uniprot:E2RCL5
Length = 314
Score = 195 (73.7 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 58/159 (36%), Positives = 79/159 (49%)
Query: 19 PLFLSDEQVRDLLDWESL-VPAIXXXXXXXXXX---XXIQPARLFMRIPEVNGVLLSMPG 74
P FLS +V++ L SL +P + +QP R + + + G L MP
Sbjct: 5 PAFLSAAEVQEHLRSSSLLIPPLEAALANFSSGPDGGVMQPVRTVVPVAKHRGFLGVMPA 64
Query: 75 YIKRTGPDGEDSLAIKVVTSFTDNKVKG-LPSVLATVLLYNTDNGKLKVVMEGTEITKWR 133
Y ED+L K+VT + + +PS ATVLL+ NG L VM+G IT R
Sbjct: 65 YSA-----AEDALTTKLVTFYEGHSTTSTVPSHQATVLLFEPSNGSLLAVMDGNVITAKR 119
Query: 134 TAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAF 172
TAA S +ATK L S + VL I+G+G QAY H + F
Sbjct: 120 TAAVSAIATKFLKPPSSE---VLCILGAGVQAYSHYEVF 155
Score = 62 (26.9 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 197 GMATEDVITAKLIYDKYQA 215
GMA ED++ AKL+YD + +
Sbjct: 294 GMAVEDMVAAKLVYDSWSS 312
>UNIPROTKB|H9KVC2 [details] [associations]
symbol:CRYM "Thiomorpholine-carboxylate dehydrogenase"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0042403 "thyroid hormone
metabolic process" evidence=IEA] [GO:0042562 "hormone binding"
evidence=IEA] InterPro:IPR016040 Pfam:PF02423 GO:GO:0005739
GO:GO:0005634 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0042562
Gene3D:3.30.1780.10 InterPro:IPR003462 InterPro:IPR023401
PIRSF:PIRSF001439 EMBL:AF001550 CTD:1428 GO:GO:0042403
RefSeq:NP_001014444.1 UniGene:Hs.924 GeneID:1428 KEGG:hsa:1428
HGNC:HGNC:2418 ProteinModelPortal:H9KVC2 SMR:H9KVC2 PRIDE:H9KVC2
Ensembl:ENST00000415987 Bgee:H9KVC2 Uniprot:H9KVC2
Length = 272
Score = 191 (72.3 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 51/129 (39%), Positives = 68/129 (52%)
Query: 53 IQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGL-PSVLATVL 111
+QP R + + + G L MP Y ED+L K+VT + D + + PS ATVL
Sbjct: 1 MQPVRTVVPVTKHRGYLGVMPAYSA-----AEDALTTKLVTFYEDRGITSVVPSHQATVL 55
Query: 112 LYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA 171
L+ NG L VM+G IT RTAA S +ATK L S + VL I+G+G QAY H +
Sbjct: 56 LFEPSNGTLLAVMDGNVITAKRTAAVSAIATKFLKPPSSE---VLCILGAGVQAYSHYEI 112
Query: 172 FHASLKLKK 180
F K+
Sbjct: 113 FTEQFSFKE 121
Score = 62 (26.9 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 197 GMATEDVITAKLIYDKYQA 215
GMA ED + AKLIYD + +
Sbjct: 252 GMAVEDTVAAKLIYDSWSS 270
>UNIPROTKB|E1C5W9 [details] [associations]
symbol:CRYM "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0003714 "transcription
corepressor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0007605 "sensory perception of
sound" evidence=IEA] [GO:0042403 "thyroid hormone metabolic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0050661 "NADP binding" evidence=IEA]
[GO:0070324 "thyroid hormone binding" evidence=IEA] [GO:0070327
"thyroid hormone transport" evidence=IEA] InterPro:IPR016040
Pfam:PF02423 GO:GO:0005739 GO:GO:0005886 GO:GO:0005634
GO:GO:0003714 Gene3D:3.40.50.720 GO:GO:0050661 GO:GO:0000122
GO:GO:0070324 Gene3D:3.30.1780.10 InterPro:IPR003462
InterPro:IPR023401 PIRSF:PIRSF001439 CTD:1428
GeneTree:ENSGT00390000000237 OMA:MKEAVLY GO:GO:0042403
GO:GO:0070327 EMBL:AADN02064639 IPI:IPI00595129 RefSeq:XP_424610.2
UniGene:Gga.1079 ProteinModelPortal:E1C5W9
Ensembl:ENSGALT00000003915 GeneID:427008 KEGG:gga:427008
NextBio:20828374 Uniprot:E1C5W9
Length = 314
Score = 192 (72.6 bits), Expect = 7.0e-20, Sum P(2) = 7.0e-20
Identities = 57/161 (35%), Positives = 80/161 (49%)
Query: 16 NQPPLFLSDEQVRDLLDWESLV-PAIXXXX---XXXXXXXXIQPARLFMRIPEVNGVLLS 71
++PP+F+S +V LL SL+ P + QP R + + G L
Sbjct: 3 SEPPVFISAAEVERLLPRASLLLPGLEAALCNFSAGAAGGVEQPLRAVVPVRPHGGFLGV 62
Query: 72 MPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITK 131
MP Y +D+L K+VT + PS ATVLL++ G L+ V++GT IT
Sbjct: 63 MPAYSA-----ADDALTTKLVTFYEHRGDSAAPSHRATVLLFDPRCGSLRAVLDGTVITA 117
Query: 132 WRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAF 172
RTAA S +ATK L RS + VL I+G+G QA H + F
Sbjct: 118 KRTAAVSAIATKLLMPRSAE---VLCILGAGVQARSHYEIF 155
Score = 62 (26.9 bits), Expect = 7.0e-20, Sum P(2) = 7.0e-20
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 178 LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA 215
LK L E T T GMA ED I AK +YD + A
Sbjct: 276 LKGTKPALPEKT-TVFKSLGMAVEDTIAAKFVYDAWSA 312
>UNIPROTKB|Q28488 [details] [associations]
symbol:CRYM "Thiomorpholine-carboxylate dehydrogenase"
species:9316 "Macropus fuliginosus" [GO:0008473 "ornithine
cyclodeaminase activity" evidence=IDA] InterPro:IPR016040
Pfam:PF02423 GO:GO:0005737 GO:GO:0000166 Gene3D:3.40.50.720
Gene3D:3.30.1780.10 InterPro:IPR003462 InterPro:IPR023401
PIRSF:PIRSF001439 GO:GO:0005212 HOVERGEN:HBG005408 GO:GO:0047127
EMBL:M90841 PIR:A46290 ProteinModelPortal:Q28488 SMR:Q28488
Uniprot:Q28488
Length = 314
Score = 188 (71.2 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 62/187 (33%), Positives = 83/187 (44%)
Query: 19 PLFLSDEQVRDLLDWES-LVPAIXXXXXXXXXXXX---IQPARLFMRIPEVNGVLLSMPG 74
P FL E V L S L+PA+ +QP R + + + G L MP
Sbjct: 5 PAFLRSEDVERYLGSSSILLPALEKALANFSSGSEGGVVQPVRTVIPVAKHQGFLGIMPV 64
Query: 75 YIKRTGPDGEDSLAIKVVTSFTD-NKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWR 133
Y ED+L K+VT + + PS TVL ++ NG L +M+G IT R
Sbjct: 65 YSA-----SEDALTTKLVTFYEGMSPTSTAPSHQTTVLFFDPSNGSLLSIMDGNIITAKR 119
Query: 134 TAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNRGLTEGTV 190
TAA S +ATK L S + VL I+G+G QAY H + F K+ +NR
Sbjct: 120 TAAVSAIATKFLKPPSSE---VLCILGAGVQAYSHYEIFKEQFSFKEVRIWNRTKKNAEK 176
Query: 191 TGSTKKG 197
T KG
Sbjct: 177 FAQTVKG 183
Score = 61 (26.5 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 197 GMATEDVITAKLIYDKYQA 215
GMA ED + AKL+YD + +
Sbjct: 294 GMAVEDAVAAKLVYDSWSS 312
>ZFIN|ZDB-GENE-070112-1782 [details] [associations]
symbol:crym "crystallin, mu" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR016040 Pfam:PF02423 ZFIN:ZDB-GENE-070112-1782
GO:GO:0000166 Gene3D:3.40.50.720 Gene3D:3.30.1780.10
InterPro:IPR003462 InterPro:IPR023401 PIRSF:PIRSF001439
GeneTree:ENSGT00390000000237 EMBL:CU104767 EMBL:CU633193
IPI:IPI00829230 Ensembl:ENSDART00000091229 ArrayExpress:F1QTN9
Bgee:F1QTN9 Uniprot:F1QTN9
Length = 312
Score = 189 (71.6 bits), Expect = 8.3e-19, Sum P(2) = 8.3e-19
Identities = 55/164 (33%), Positives = 79/164 (48%)
Query: 20 LFLSDEQVRDLLDWESLVP---AIXXXXXXXXXXXXIQPARLFMRIPEVNGVLLSMPGYI 76
+ L+ +V LL ++ L+P ++ IQP R + I NG L MP Y+
Sbjct: 6 VLLNKCEVERLLSYDELIPRLESVMGKFSKRDSSEIIQPVRSVVPIQPYNGFLGVMPSYV 65
Query: 77 KRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAA 136
DG L K+VT + + LPS ATVLL++ + G + +M+G IT RTAA
Sbjct: 66 ---AADG--ILCTKMVTFYQRAEGSSLPSTQATVLLFHPERGHITAIMDGEAITAKRTAA 120
Query: 137 ASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK 180
S ++ K L + VL I+GSG QA H F K K+
Sbjct: 121 VSAISAKLLMPALSE---VLCILGSGQQAKSHYDVFTNVFKFKE 161
Score = 55 (24.4 bits), Expect = 8.3e-19, Sum P(2) = 8.3e-19
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 197 GMATEDVITAKLIYDKYQAQH 217
GM +D ++AKL+ +K +++H
Sbjct: 292 GMGIQDAVSAKLVLEKLKSEH 312
>UNIPROTKB|I3L325 [details] [associations]
symbol:CRYM "Thiomorpholine-carboxylate dehydrogenase"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0042403 "thyroid hormone
metabolic process" evidence=IEA] [GO:0042562 "hormone binding"
evidence=IEA] InterPro:IPR016040 Pfam:PF02423 GO:GO:0005739
GO:GO:0005634 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0042562
Gene3D:3.30.1780.10 InterPro:IPR003462 InterPro:IPR023401
EMBL:AF001550 GO:GO:0042403 HGNC:HGNC:2418 Ensembl:ENST00000576703
Bgee:I3L325 Uniprot:I3L325
Length = 241
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 51/129 (39%), Positives = 68/129 (52%)
Query: 53 IQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGL-PSVLATVL 111
+QP R + + + G L MP Y ED+L K+VT + D + + PS ATVL
Sbjct: 1 MQPVRTVVPVTKHRGYLGVMPAYSA-----AEDALTTKLVTFYEDRGITSVVPSHQATVL 55
Query: 112 LYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA 171
L+ NG L VM+G IT RTAA S +ATK L S + VL I+G+G QAY H +
Sbjct: 56 LFEPSNGTLLAVMDGNVITAKRTAAVSAIATKFLKPPSSE---VLCILGAGVQAYSHYEI 112
Query: 172 FHASLKLKK 180
F K+
Sbjct: 113 FTEQFSFKE 121
>UNIPROTKB|I3NI53 [details] [associations]
symbol:CRYM "Thiomorpholine-carboxylate dehydrogenase"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0042403 "thyroid
hormone metabolic process" evidence=IEA] [GO:0042562 "hormone
binding" evidence=IEA] Pfam:PF02423 GO:GO:0005739 GO:GO:0005634
GO:GO:0042562 Gene3D:3.30.1780.10 InterPro:IPR003462
InterPro:IPR023401 EMBL:AF001550 GO:GO:0042403 HGNC:HGNC:2418
Ensembl:ENST00000572914 Bgee:I3NI53 Uniprot:I3NI53
Length = 140
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 48/132 (36%), Positives = 64/132 (48%)
Query: 19 PLFLSDEQVRDLLDWESL-VPAIXXXXXXXXXX---XXIQPARLFMRIPEVNGVLLSMPG 74
P FLS +V + L SL +P + +QP R + + + G L MP
Sbjct: 5 PAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLGVMPA 64
Query: 75 YIKRTGPDGEDSLAIKVVTSFTDNKVKGL-PSVLATVLLYNTDNGKLKVVMEGTEITKWR 133
Y ED+L K+VT + D + + PS ATVLL+ NG L VM+G IT R
Sbjct: 65 YSA-----AEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKR 119
Query: 134 TAAASVVATKHL 145
TAA S +ATK L
Sbjct: 120 TAAVSAIATKFL 131
>UNIPROTKB|O28608 [details] [associations]
symbol:ala "Alanine dehydrogenase" species:224325
"Archaeoglobus fulgidus DSM 4304" [GO:0000286 "alanine
dehydrogenase activity" evidence=IDA] [GO:0006522 "alanine
metabolic process" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0051287 "NAD binding"
evidence=IDA] InterPro:IPR016040 Pfam:PF02423 GO:GO:0000166
Gene3D:3.40.50.720 EMBL:AE000782 PIR:H69457 RefSeq:NP_070493.1
PDB:1OMO PDB:1VLL PDBsum:1OMO PDBsum:1VLL ProteinModelPortal:O28608
SMR:O28608 GeneID:1484888 GenomeReviews:AE000782_GR KEGG:afu:AF1665
eggNOG:COG2423 OMA:RMQIRAI ProtClustDB:PRK06046
BioCyc:AFUL224325:GJBC-1699-MONOMER BRENDA:1.4.1.1
EvolutionaryTrace:O28608 Gene3D:3.30.1780.10 HAMAP:MF_00935
InterPro:IPR012742 InterPro:IPR003462 InterPro:IPR023401
PIRSF:PIRSF001439 TIGRFAMs:TIGR02371 Uniprot:O28608
Length = 322
Score = 142 (55.0 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 43/152 (28%), Positives = 71/152 (46%)
Query: 20 LFLSDEQVRDLLDWESLVPAIXXXXXXXXXXXXIQPARLFMRIPEVNGVLLSMPGYIKRT 79
L L+ E+V L+ + + A+ P ++++ + G L +MP ++
Sbjct: 4 LILTQEEVESLISMDEAMNAVEEAFRLYALGKAQMPPKVYLEFEK--GDLRAMPAHLM-- 59
Query: 80 GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
G G +K V S N KGLP+V+A ++L + + G VM+ T T RT AA
Sbjct: 60 GYAG-----LKWVNSHPGNPDKGLPTVMALMILNSPETGFPLAVMDATYTTSLRTGAAGG 114
Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA 171
+A K+L ++ V +G G QAY +A
Sbjct: 115 IAAKYLARKNSS---VFGFIGCGTQAYFQLEA 143
Score = 53 (23.7 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 167 IHAKAFHASLKLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYD 211
+HA LK E T+ ST G+A +DV AK++Y+
Sbjct: 264 VHATIGEVIAGLKDGRESDEEITIFDST--GLAIQDVAVAKVVYE 306
>DICTYBASE|DDB_G0292894 [details] [associations]
symbol:DDB_G0292894 "putative ornithine
cyclodeaminase" species:44689 "Dictyostelium discoideum"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016829 "lyase
activity" evidence=IEA] InterPro:IPR016040 dictyBase:DDB_G0292894
Pfam:PF02423 GO:GO:0000166 Gene3D:3.40.50.720 EMBL:AAFI02000197
eggNOG:COG2423 OMA:RMQIRAI Gene3D:3.30.1780.10 InterPro:IPR003462
InterPro:IPR023401 PIRSF:PIRSF001439 GO:GO:0016829
RefSeq:XP_629418.1 ProteinModelPortal:Q54CJ8 STRING:Q54CJ8
EnsemblProtists:DDB0305175 GeneID:8628937 KEGG:ddi:DDB_G0292894
KO:K01750 ProtClustDB:CLSZ2429349 Uniprot:Q54CJ8
Length = 368
Score = 142 (55.0 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 84 EDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATK 143
++S+ IK+V +F +N KGLP+V AT++L + + G V+ T IT RTAA S ++ K
Sbjct: 75 DESVGIKIVGTFANNANKGLPTVPATIILNDIETGLANAVIGATYITGARTAAGSAISVK 134
Query: 144 HLFGRSGDKDLVLAIMGSGAQAYIH 168
+L S + + + GS QA +H
Sbjct: 135 YLATESPE---TIFVFGSSLQAQLH 156
Score = 53 (23.7 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 177 KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDK 212
K K+ T ++T G A +DV TA IY K
Sbjct: 319 KYKQQTTTTTSKSITVYKSSGTAIQDVATANYIYKK 354
>UNIPROTKB|Q5LLT9 [details] [associations]
symbol:SPO3832 "Ornithine cyclodeaminase/mu-crystallin
family protein" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR016040 Pfam:PF02423
GO:GO:0000166 Gene3D:3.40.50.720 EMBL:CP000031
GenomeReviews:CP000031_GR Gene3D:3.30.1780.10 InterPro:IPR003462
InterPro:IPR023401 PIRSF:PIRSF001439 HOGENOM:HOG000137263 KO:K01750
RefSeq:YP_169020.1 ProteinModelPortal:Q5LLT9 GeneID:3192755
KEGG:sil:SPO3832 PATRIC:23381167 OMA:ISAVEHN Uniprot:Q5LLT9
Length = 315
Score = 153 (58.9 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 49/150 (32%), Positives = 74/150 (49%)
Query: 22 LSDEQVRDLLDWESLVPAIXXXXXXXXXXXXIQPARLFMRIPEVNGVLLSMPGYIKRTGP 81
+S E++R L + + P R M I N + + MPG + + P
Sbjct: 4 ISAEEIRQHLPMRDAIEVVEKTMIQVSQGKANLPLRTVMDINGTNRLGV-MPGAL--SDP 60
Query: 82 DGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVA 141
IKV++ F N KGL S TVLL++ + G+ + ++ IT RTAAA+ VA
Sbjct: 61 T---LYGIKVLSLFPGNPAKGLSSHTGTVLLFDAETGQPRAALDADAITAIRTAAATAVA 117
Query: 142 TKHLFGRSGDKDLVLAIMGSGAQAYIHAKA 171
T+ L RS + VLA++G+G QA H +A
Sbjct: 118 TRAL-ARSDAQ--VLALIGTGEQAESHIEA 144
>TIGR_CMR|SPO_3832 [details] [associations]
symbol:SPO_3832 "ornithine cyclodeaminase/mu-crystallin
family protein" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR016040 Pfam:PF02423
GO:GO:0000166 Gene3D:3.40.50.720 EMBL:CP000031
GenomeReviews:CP000031_GR Gene3D:3.30.1780.10 InterPro:IPR003462
InterPro:IPR023401 PIRSF:PIRSF001439 HOGENOM:HOG000137263 KO:K01750
RefSeq:YP_169020.1 ProteinModelPortal:Q5LLT9 GeneID:3192755
KEGG:sil:SPO3832 PATRIC:23381167 OMA:ISAVEHN Uniprot:Q5LLT9
Length = 315
Score = 153 (58.9 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 49/150 (32%), Positives = 74/150 (49%)
Query: 22 LSDEQVRDLLDWESLVPAIXXXXXXXXXXXXIQPARLFMRIPEVNGVLLSMPGYIKRTGP 81
+S E++R L + + P R M I N + + MPG + + P
Sbjct: 4 ISAEEIRQHLPMRDAIEVVEKTMIQVSQGKANLPLRTVMDINGTNRLGV-MPGAL--SDP 60
Query: 82 DGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVA 141
IKV++ F N KGL S TVLL++ + G+ + ++ IT RTAAA+ VA
Sbjct: 61 T---LYGIKVLSLFPGNPAKGLSSHTGTVLLFDAETGQPRAALDADAITAIRTAAATAVA 117
Query: 142 TKHLFGRSGDKDLVLAIMGSGAQAYIHAKA 171
T+ L RS + VLA++G+G QA H +A
Sbjct: 118 TRAL-ARSDAQ--VLALIGTGEQAESHIEA 144
>UNIPROTKB|Q81UH0 [details] [associations]
symbol:BAS0854 "Ornithine cyclodeaminase/mu-crystallin
family protein" species:1392 "Bacillus anthracis" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR016040 Pfam:PF02423 GO:GO:0000166
Gene3D:3.40.50.720 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR Gene3D:3.30.1780.10 InterPro:IPR003462
InterPro:IPR023401 PIRSF:PIRSF001439 HOGENOM:HOG000137263
OMA:MKEAVLY KO:K01750 RefSeq:NP_843413.1 RefSeq:YP_017537.1
RefSeq:YP_027130.1 ProteinModelPortal:Q81UH0 IntAct:Q81UH0
DNASU:1088949 EnsemblBacteria:EBBACT00000009130
EnsemblBacteria:EBBACT00000017200 EnsemblBacteria:EBBACT00000022194
GeneID:1088949 GeneID:2817725 GeneID:2850210 KEGG:ban:BA_0902
KEGG:bar:GBAA_0902 KEGG:bat:BAS0854 ProtClustDB:PRK08618
BioCyc:BANT260799:GJAJ-934-MONOMER
BioCyc:BANT261594:GJ7F-967-MONOMER Uniprot:Q81UH0
Length = 325
Score = 139 (54.0 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 49/167 (29%), Positives = 76/167 (45%)
Query: 20 LFLSDEQVRDLLDWESLVPAIXXXXXXXXXXXXIQPARLFMRIPEVNGVLLSMPGYIKRT 79
L +S ++ RDL++ ++ I P R + L MP
Sbjct: 2 LVISAKEQRDLVNMNEVIAYAALALQEFSAERTITPIRTSLPFANEKNTALIMPSVA--- 58
Query: 80 GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
+G + L +KVVT NK G ++ V+L + G+ ++EG+ +T RT A S
Sbjct: 59 --EGLEVLGLKVVTVVPHNKKIGKKTINGIVMLSDFQTGEPLALLEGSYLTMIRTGALSG 116
Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNR 183
VATK+L R K L I+G+G QA A+A A +++ YNR
Sbjct: 117 VATKYL-ARHNAK--TLCIIGTGEQAKGIAEAVFAVRDIERVMLYNR 160
Score = 47 (21.6 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 197 GMATEDVITAKLIYDK 212
G+A D+I AK +Y+K
Sbjct: 298 GLAVVDIIVAKYLYEK 313
>TIGR_CMR|BA_0902 [details] [associations]
symbol:BA_0902 "ornithine cyclodeaminase/mu-crystallin
family protein" species:198094 "Bacillus anthracis str. Ames"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR016040 Pfam:PF02423
GO:GO:0000166 Gene3D:3.40.50.720 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR Gene3D:3.30.1780.10 InterPro:IPR003462
InterPro:IPR023401 PIRSF:PIRSF001439 HOGENOM:HOG000137263
OMA:MKEAVLY KO:K01750 RefSeq:NP_843413.1 RefSeq:YP_017537.1
RefSeq:YP_027130.1 ProteinModelPortal:Q81UH0 IntAct:Q81UH0
DNASU:1088949 EnsemblBacteria:EBBACT00000009130
EnsemblBacteria:EBBACT00000017200 EnsemblBacteria:EBBACT00000022194
GeneID:1088949 GeneID:2817725 GeneID:2850210 KEGG:ban:BA_0902
KEGG:bar:GBAA_0902 KEGG:bat:BAS0854 ProtClustDB:PRK08618
BioCyc:BANT260799:GJAJ-934-MONOMER
BioCyc:BANT261594:GJ7F-967-MONOMER Uniprot:Q81UH0
Length = 325
Score = 139 (54.0 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 49/167 (29%), Positives = 76/167 (45%)
Query: 20 LFLSDEQVRDLLDWESLVPAIXXXXXXXXXXXXIQPARLFMRIPEVNGVLLSMPGYIKRT 79
L +S ++ RDL++ ++ I P R + L MP
Sbjct: 2 LVISAKEQRDLVNMNEVIAYAALALQEFSAERTITPIRTSLPFANEKNTALIMPSVA--- 58
Query: 80 GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
+G + L +KVVT NK G ++ V+L + G+ ++EG+ +T RT A S
Sbjct: 59 --EGLEVLGLKVVTVVPHNKKIGKKTINGIVMLSDFQTGEPLALLEGSYLTMIRTGALSG 116
Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNR 183
VATK+L R K L I+G+G QA A+A A +++ YNR
Sbjct: 117 VATKYL-ARHNAK--TLCIIGTGEQAKGIAEAVFAVRDIERVMLYNR 160
Score = 47 (21.6 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 197 GMATEDVITAKLIYDK 212
G+A D+I AK +Y+K
Sbjct: 298 GLAVVDIIVAKYLYEK 313
>POMBASE|SPAP11E10.01 [details] [associations]
symbol:SPAP11E10.01 "ornithine cyclodeaminase family
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR016040 PomBase:SPAP11E10.01 Pfam:PF02423 GO:GO:0005737
EMBL:CU329670 GO:GO:0000166 Gene3D:3.40.50.720 eggNOG:COG2423
Gene3D:3.30.1780.10 InterPro:IPR003462 InterPro:IPR023401
PIRSF:PIRSF001439 HOGENOM:HOG000137263 KO:K01750 OrthoDB:EOG4X0R2P
RefSeq:NP_593514.1 ProteinModelPortal:Q9HDZ0 STRING:Q9HDZ0
EnsemblFungi:SPAP11E10.01.1 GeneID:2541644 KEGG:spo:SPAP11E10.01
OMA:SHEMKEC NextBio:20802737 Uniprot:Q9HDZ0
Length = 330
Score = 143 (55.4 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 56/165 (33%), Positives = 79/165 (47%)
Query: 21 FLSDEQVRDLLDWESLVPAIXXXXXXXXXXXXIQPARLFMRIPE------VNGVLLSMPG 74
FLS E + L W L+ A+ + P RL I E N +LL MP
Sbjct: 7 FLSRETLSSSLGWIPLINALREIFTENV----VCPTRLHYPIDEDNPSSTANNILLIMPC 62
Query: 75 YIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRT 134
+I P G+ L +K V F +N GLPS+ + LL + G ++G E+T RT
Sbjct: 63 WI----P-GK-FLGVKQVNVFPENTKHGLPSLSSHYLLSDATTGCHLAQLDGNELTSRRT 116
Query: 135 AAASVVATKHLFGRSGDKDLVLAIMGSG--AQAYIHAKAFHASLK 177
AAAS +A+ +L S + L I+GSG A+ IHA H S++
Sbjct: 117 AAASALASSYL---SKEDSTSLLIIGSGKVAEKLIHA---HCSVR 155
>UNIPROTKB|Q5LUB3 [details] [associations]
symbol:SPO1141 "Ornithine cyclodeaminase/mu-crystallin
family protein" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR016040 Pfam:PF02423
GO:GO:0000166 Gene3D:3.40.50.720 EMBL:CP000031
GenomeReviews:CP000031_GR Gene3D:3.30.1780.10 InterPro:IPR003462
InterPro:IPR023401 PIRSF:PIRSF001439 HOGENOM:HOG000137263 KO:K01750
RefSeq:YP_166392.1 ProteinModelPortal:Q5LUB3 GeneID:3195478
KEGG:sil:SPO1141 PATRIC:23375585 OMA:THISAVG ProtClustDB:PRK08291
InterPro:IPR014334 TIGRFAMs:TIGR02992 Uniprot:Q5LUB3
Length = 344
Score = 142 (55.0 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 43/153 (28%), Positives = 77/153 (50%)
Query: 22 LSDEQVRDL--LDWESLVPAIXXXXXXXXXXXXIQPARLFMRIPEVNGVLLSMPGYIKRT 79
L++ ++RDL LD ++ V + + P + + +P+ NG + Y+
Sbjct: 21 LTEAELRDLVPLDLDA-VDCVEQGFTTLAGGKVVMPPIMTLGVPDHNGEVCVKTAYV--- 76
Query: 80 GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLK-VVMEGTEITKWRTAAAS 138
P G DS A+K+ F DN GLPS ++++++ G L+ ++++ +T RTAAA
Sbjct: 77 -P-GIDSFAMKMSPGFFDNPKIGLPSTTGLMVVFSSRTGILEALLLDNGYLTDVRTAAAG 134
Query: 139 VVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA 171
VA +HL + I+G+G QA + +A
Sbjct: 135 AVAARHLARAEASH---VCIIGAGVQARMQLQA 164
>TIGR_CMR|SPO_1141 [details] [associations]
symbol:SPO_1141 "ectoine utilization protein EutC"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR016040 Pfam:PF02423 GO:GO:0000166
Gene3D:3.40.50.720 EMBL:CP000031 GenomeReviews:CP000031_GR
Gene3D:3.30.1780.10 InterPro:IPR003462 InterPro:IPR023401
PIRSF:PIRSF001439 HOGENOM:HOG000137263 KO:K01750 RefSeq:YP_166392.1
ProteinModelPortal:Q5LUB3 GeneID:3195478 KEGG:sil:SPO1141
PATRIC:23375585 OMA:THISAVG ProtClustDB:PRK08291 InterPro:IPR014334
TIGRFAMs:TIGR02992 Uniprot:Q5LUB3
Length = 344
Score = 142 (55.0 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 43/153 (28%), Positives = 77/153 (50%)
Query: 22 LSDEQVRDL--LDWESLVPAIXXXXXXXXXXXXIQPARLFMRIPEVNGVLLSMPGYIKRT 79
L++ ++RDL LD ++ V + + P + + +P+ NG + Y+
Sbjct: 21 LTEAELRDLVPLDLDA-VDCVEQGFTTLAGGKVVMPPIMTLGVPDHNGEVCVKTAYV--- 76
Query: 80 GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLK-VVMEGTEITKWRTAAAS 138
P G DS A+K+ F DN GLPS ++++++ G L+ ++++ +T RTAAA
Sbjct: 77 -P-GIDSFAMKMSPGFFDNPKIGLPSTTGLMVVFSSRTGILEALLLDNGYLTDVRTAAAG 134
Query: 139 VVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA 171
VA +HL + I+G+G QA + +A
Sbjct: 135 AVAARHLARAEASH---VCIIGAGVQARMQLQA 164
>TAIR|locus:2176882 [details] [associations]
symbol:AT5G52810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=ISS] [GO:0005212 "structural
constituent of eye lens" evidence=ISS] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009627 "systemic acquired resistance"
evidence=RCA] [GO:0034976 "response to endoplasmic reticulum
stress" evidence=RCA] InterPro:IPR016040 Pfam:PF02423 EMBL:CP002688
GO:GO:0009507 GO:GO:0000166 Gene3D:3.40.50.720 EMBL:AB009055
Gene3D:3.30.1780.10 InterPro:IPR003462 InterPro:IPR023401
PIRSF:PIRSF001439 OMA:SHEMKEC UniGene:At.51090 UniGene:At.8892
EMBL:BT020531 EMBL:BT021995 IPI:IPI00533010 RefSeq:NP_200093.1
UniGene:At.74433 ProteinModelPortal:Q9FLY0 SMR:Q9FLY0 STRING:Q9FLY0
PRIDE:Q9FLY0 EnsemblPlants:AT5G52810.1 GeneID:835358
KEGG:ath:AT5G52810 TAIR:At5g52810 InParanoid:Q9FLY0
PhylomeDB:Q9FLY0 ProtClustDB:CLSN2686130 Genevestigator:Q9FLY0
Uniprot:Q9FLY0
Length = 325
Score = 126 (49.4 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 41/159 (25%), Positives = 72/159 (45%)
Query: 19 PLFLSDEQVRDLLDWESLVPAIXXXXXXXXXXXXIQPARLFMRIPEVNGVLLSMPGYIKR 78
P+F+ E +L E+L+ P R + + +LL MP +
Sbjct: 5 PVFIPAESFPSILSHETLINHFRTNLPKHSSTIT-SPVRQNYTVSSPSSLLL-MPSW--- 59
Query: 79 TGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAAS 138
+ + +K+VT F N + LP + + L+++ G+ M+GT +T +RT++ S
Sbjct: 60 SSSSSLPYMGVKLVTYFPHNSSQNLPGIHGSYTLFSSTTGQTLATMDGTVLTLYRTSSVS 119
Query: 139 VVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLK 177
+ +K L + D VL ++GSGA A H H + K
Sbjct: 120 GLGSKIL---ARDDSQVLIMVGSGALAP-HLIKSHLAAK 154
Score = 48 (22.0 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 179 KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKY 213
K+ + T+ TV S G T D++TA+L+++ Y
Sbjct: 289 KEGRKSSTDITVFKSV--GSGTVDLLTAQLVHETY 321
>TIGR_CMR|CPS_1455 [details] [associations]
symbol:CPS_1455 "putative ornithine cyclodeaminase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008473
"ornithine cyclodeaminase activity" evidence=ISS] [GO:0019466
"ornithine catabolic process via proline" evidence=ISS]
InterPro:IPR016040 Pfam:PF02423 GO:GO:0000166 Gene3D:3.40.50.720
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG2423
Gene3D:3.30.1780.10 InterPro:IPR003462 InterPro:IPR023401
PIRSF:PIRSF001439 HOGENOM:HOG000137263 KO:K01750
ProtClustDB:PRK06141 RefSeq:YP_268197.1 ProteinModelPortal:Q485R8
STRING:Q485R8 DNASU:3521126 GeneID:3521126 KEGG:cps:CPS_1455
PATRIC:21466119 OMA:IAVKAFT BioCyc:CPSY167879:GI48-1536-MONOMER
Uniprot:Q485R8
Length = 316
Score = 133 (51.9 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 43/157 (27%), Positives = 72/157 (45%)
Query: 22 LSDEQVRDLLDWESLVPAIXXXXXXXXXXXXIQPARLFMRIPEVNGVLLSMPGYIKRTGP 81
+S EQV L++E L+P + Q L E + +P +
Sbjct: 4 ISAEQVHQNLNFEELIPLLKQSFSRPFSMPQRQVYSLAPEQSENHDAFALLPSW------ 57
Query: 82 DGEDSLAIKVVTSFTDNKVK-GLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVV 140
E+ + K T F DN K LP + + ++L+ G+ +++GT +T WRTAA S +
Sbjct: 58 -NEEVIGNKAFTYFPDNAKKHDLPGLFSKIMLFKRQTGEPLALVDGTSVTYWRTAAISAL 116
Query: 141 ATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLK 177
A++ L R + L+L G+G A KA H +++
Sbjct: 117 ASQ-LLSRKNSQHLML--FGTGNLASYLVKA-HLTVR 149
>UNIPROTKB|Q5LL80 [details] [associations]
symbol:Q5LL80 "Ornithine cyclodeaminase/mu-crystallin
family protein" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR016040 Pfam:PF02423
GO:GO:0000166 Gene3D:3.40.50.720 Gene3D:3.30.1780.10
InterPro:IPR003462 InterPro:IPR023401 PIRSF:PIRSF001439
EMBL:CP000032 GenomeReviews:CP000032_GR HOGENOM:HOG000137263
KO:K01750 ProtClustDB:CLSK935201 RefSeq:YP_164978.1
ProteinModelPortal:Q5LL80 GeneID:3196758 KEGG:sil:SPOA0147
PATRIC:23381626 OMA:ECQWAPD Uniprot:Q5LL80
Length = 292
Score = 126 (49.4 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 41/117 (35%), Positives = 64/117 (54%)
Query: 56 ARLFMRIPEVNGVLLSMPGYIKRTGPDGED-SLAIKVVTSFTDNKVKGLPSVLATVLLYN 114
AR F I E G ++ G+ ++G D + +L +K + N KGL + +TV L++
Sbjct: 6 ARNFPVIREAIGHADALYGF--KSGFDRQALNLGLKSGGYWPGNADKGLTNHQSTVFLFD 63
Query: 115 TDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA 171
D G+ + V+ G +T RTAAAS V+ KHL R K V+ ++G+G QA +A
Sbjct: 64 ADTGRCQAVVGGNLLTALRTAAASSVSIKHL-ARQDAK--VIGMIGAGHQAKFQLRA 117
>TIGR_CMR|SPO_A0147 [details] [associations]
symbol:SPO_A0147 "ornithine cyclodeaminase/mu-crystallin
family protein" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR016040 Pfam:PF02423
GO:GO:0000166 Gene3D:3.40.50.720 Gene3D:3.30.1780.10
InterPro:IPR003462 InterPro:IPR023401 PIRSF:PIRSF001439
EMBL:CP000032 GenomeReviews:CP000032_GR HOGENOM:HOG000137263
KO:K01750 ProtClustDB:CLSK935201 RefSeq:YP_164978.1
ProteinModelPortal:Q5LL80 GeneID:3196758 KEGG:sil:SPOA0147
PATRIC:23381626 OMA:ECQWAPD Uniprot:Q5LL80
Length = 292
Score = 126 (49.4 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 41/117 (35%), Positives = 64/117 (54%)
Query: 56 ARLFMRIPEVNGVLLSMPGYIKRTGPDGED-SLAIKVVTSFTDNKVKGLPSVLATVLLYN 114
AR F I E G ++ G+ ++G D + +L +K + N KGL + +TV L++
Sbjct: 6 ARNFPVIREAIGHADALYGF--KSGFDRQALNLGLKSGGYWPGNADKGLTNHQSTVFLFD 63
Query: 115 TDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA 171
D G+ + V+ G +T RTAAAS V+ KHL R K V+ ++G+G QA +A
Sbjct: 64 ADTGRCQAVVGGNLLTALRTAAASSVSIKHL-ARQDAK--VIGMIGAGHQAKFQLRA 117
>TIGR_CMR|CPS_2747 [details] [associations]
symbol:CPS_2747 "putative ornithine cyclodeaminase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008473
"ornithine cyclodeaminase activity" evidence=ISS] [GO:0019466
"ornithine catabolic process via proline" evidence=ISS]
InterPro:IPR016040 Pfam:PF02423 GO:GO:0000166 Gene3D:3.40.50.720
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG2423
Gene3D:3.30.1780.10 InterPro:IPR003462 InterPro:IPR023401
PIRSF:PIRSF001439 HOGENOM:HOG000137263 KO:K01750 RefSeq:YP_269459.1
ProteinModelPortal:Q480R0 STRING:Q480R0 DNASU:3519935
GeneID:3519935 KEGG:cps:CPS_2747 PATRIC:21468531 OMA:DTFLYRD
ProtClustDB:PRK06141 BioCyc:CPSY167879:GI48-2808-MONOMER
Uniprot:Q480R0
Length = 319
Score = 125 (49.1 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 43/147 (29%), Positives = 74/147 (50%)
Query: 22 LSDEQVRDLLDWESLVPAIXXXXXXXXXXXXIQPARLF--MRIPE-VNGVLLSMPGYIKR 78
L+ Q++ L W+SL+ A+ P R + +P+ ++ LL MP ++
Sbjct: 3 LNATQLQAALPWDSLIEALKDIFVREV----CSPVRHHHSINVPDKLSATLLLMPAWL-- 56
Query: 79 TGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAAS 138
+GE L IK V F N V +P++ + +L G+ + ++G E+T RTAAAS
Sbjct: 57 ---EGE-YLGIKQVNVFPSNNVSNIPALSSHYMLSCGKTGQPLMQLDGNELTARRTAAAS 112
Query: 139 VVATKHLFGRSGDKDLVLAIMGSGAQA 165
+A+ +L S + V+ ++GSG A
Sbjct: 113 ALASAYL---SREDARVMLMVGSGRMA 136
>UNIPROTKB|Q0BZ13 [details] [associations]
symbol:HNE_2590 "Ornithine cyclodeaminase/mu-crystallin
family protein" species:228405 "Hyphomonas neptunium ATCC 15444"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR016040 Pfam:PF02423
GO:GO:0000166 Gene3D:3.40.50.720 eggNOG:COG2423 Gene3D:3.30.1780.10
InterPro:IPR003462 InterPro:IPR023401 PIRSF:PIRSF001439
EMBL:CP000158 GenomeReviews:CP000158_GR HOGENOM:HOG000137263
KO:K01750 RefSeq:YP_761280.1 ProteinModelPortal:Q0BZ13
STRING:Q0BZ13 GeneID:4289204 KEGG:hne:HNE_2590 PATRIC:32218037
OMA:SLGHIVQ ProtClustDB:CLSK848947
BioCyc:HNEP228405:GI69-2608-MONOMER Uniprot:Q0BZ13
Length = 319
Score = 115 (45.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 44/156 (28%), Positives = 72/156 (46%)
Query: 20 LFLSDEQVRDLLDWESLVPAIXXXXXXXXXXXXIQPARLFMRIPEVNGVLLSMPGYIKRT 79
+F+ +++R L + S + + Q R + + E + M G +
Sbjct: 2 IFIGADEIRQTLSYTSCIEVMRTAMARLSAGKTQQMLRQILPL-EAGRMFGIMGGTLGPG 60
Query: 80 GPDGEDSLAIKVVTSFTDNKVKGLPSV-LATVLLYNTDNGKLKVVMEGTEITKWRTAAAS 138
GP G K+V S ++ +G PS V++++ D+G +E +T RTA+AS
Sbjct: 61 GPFGS-----KLV-SVMPHRAEGGPSSHQGAVVIFDPDSGAPLCQLEAGMLTAIRTASAS 114
Query: 139 VVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHA 174
+AT L R G LAI+G+G QA+ HA A A
Sbjct: 115 AMATDVL-AREGAH--TLAILGTGEQAWHHACALPA 147
Score = 42 (19.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 13/60 (21%), Positives = 22/60 (36%)
Query: 159 MGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQHS 218
+ SGA H + L K +T +T G +D+ + +Y +HS
Sbjct: 259 IASGAVTEAHLLGEIGEVVLGKVAGRMTPDNITLYKSLGHIVQDIASGYHVYQMIHGRHS 318
>UNIPROTKB|Q5LUS6 [details] [associations]
symbol:SPO0977 "Ornithine cyclodeaminase/mu-crystallin
family protein" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR016040 Pfam:PF02423
GO:GO:0000166 Gene3D:3.40.50.720 EMBL:CP000031
GenomeReviews:CP000031_GR Gene3D:3.30.1780.10 InterPro:IPR003462
InterPro:IPR023401 PIRSF:PIRSF001439 RefSeq:YP_166229.1
ProteinModelPortal:Q5LUS6 DNASU:3195980 GeneID:3195980
KEGG:sil:SPO0977 PATRIC:23375241 HOGENOM:HOG000126864 OMA:WITEVRT
ProtClustDB:CLSK390610 Uniprot:Q5LUS6
Length = 344
Score = 122 (48.0 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 37/107 (34%), Positives = 57/107 (53%)
Query: 72 MPG---YIKRTGPDGEDSLAIKVVTSFT---DNKVKGLPSVLATVLLYNTDNGKLKVVME 125
+PG Y+ T G +S A+ VV S DN +GLP +L+ +++ G+L+ +M+
Sbjct: 57 LPGDGRYVMTTLATG-NSPALTVVKSVMVSPDNPARGLPGTEGVLLVQDSETGQLRALMQ 115
Query: 126 GTEITKWRTAAASVVATKHLFGRSGDKDL-VLAIMGSGAQAYIHAKA 171
IT+ RTA S + + L GD V+A +G+GAQA H A
Sbjct: 116 AGWITRMRTAGLSALVARRL----GDPAARVVAFIGAGAQARAHLAA 158
>TIGR_CMR|SPO_0977 [details] [associations]
symbol:SPO_0977 "ornithine cyclodeaminase/mu-crystallin
family protein" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR016040 Pfam:PF02423
GO:GO:0000166 Gene3D:3.40.50.720 EMBL:CP000031
GenomeReviews:CP000031_GR Gene3D:3.30.1780.10 InterPro:IPR003462
InterPro:IPR023401 PIRSF:PIRSF001439 RefSeq:YP_166229.1
ProteinModelPortal:Q5LUS6 DNASU:3195980 GeneID:3195980
KEGG:sil:SPO0977 PATRIC:23375241 HOGENOM:HOG000126864 OMA:WITEVRT
ProtClustDB:CLSK390610 Uniprot:Q5LUS6
Length = 344
Score = 122 (48.0 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 37/107 (34%), Positives = 57/107 (53%)
Query: 72 MPG---YIKRTGPDGEDSLAIKVVTSFT---DNKVKGLPSVLATVLLYNTDNGKLKVVME 125
+PG Y+ T G +S A+ VV S DN +GLP +L+ +++ G+L+ +M+
Sbjct: 57 LPGDGRYVMTTLATG-NSPALTVVKSVMVSPDNPARGLPGTEGVLLVQDSETGQLRALMQ 115
Query: 126 GTEITKWRTAAASVVATKHLFGRSGDKDL-VLAIMGSGAQAYIHAKA 171
IT+ RTA S + + L GD V+A +G+GAQA H A
Sbjct: 116 AGWITRMRTAGLSALVARRL----GDPAARVVAFIGAGAQARAHLAA 158
>UNIPROTKB|Q5LLV0 [details] [associations]
symbol:SPO3821 "Ornithine cyclodeaminase/mu-crystallin
family protein" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR016040 Pfam:PF02423
GO:GO:0000166 Gene3D:3.40.50.720 EMBL:CP000031
GenomeReviews:CP000031_GR Gene3D:3.30.1780.10 InterPro:IPR003462
InterPro:IPR023401 PIRSF:PIRSF001439 HOGENOM:HOG000137263 KO:K01750
OMA:DTFLYRD RefSeq:YP_169009.1 ProteinModelPortal:Q5LLV0
GeneID:3196121 KEGG:sil:SPO3821 PATRIC:23381143
ProtClustDB:CLSK836522 Uniprot:Q5LLV0
Length = 302
Score = 110 (43.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 33/119 (27%), Positives = 56/119 (47%)
Query: 87 LAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLF 146
+A+K F N +G P + V LY+ +G L +++ +TKW+TA S++A L
Sbjct: 59 IAVKTANIFPRNPERGDPMINGAVNLYSDHDGALSALVDFHLVTKWKTAGDSLLAALRL- 117
Query: 147 GRSGDKDLVLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTVTGSTKKGMATED 202
D VL ++G+G +AF A +LK +NR ++ + G+ D
Sbjct: 118 -ADPDAREVL-VVGAGTVGLSLCEAFGAGFPKARLKMWNRTRSKAEEVAARYAGLEVVD 174
Score = 38 (18.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 197 GMATEDVITAKLIYDKYQ 214
G A D++T++ I DK+Q
Sbjct: 284 GGAHLDLMTSRYILDKWQ 301
>TIGR_CMR|SPO_3821 [details] [associations]
symbol:SPO_3821 "ornithine cyclodeaminase/mu-crystallin
family protein" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR016040 Pfam:PF02423
GO:GO:0000166 Gene3D:3.40.50.720 EMBL:CP000031
GenomeReviews:CP000031_GR Gene3D:3.30.1780.10 InterPro:IPR003462
InterPro:IPR023401 PIRSF:PIRSF001439 HOGENOM:HOG000137263 KO:K01750
OMA:DTFLYRD RefSeq:YP_169009.1 ProteinModelPortal:Q5LLV0
GeneID:3196121 KEGG:sil:SPO3821 PATRIC:23381143
ProtClustDB:CLSK836522 Uniprot:Q5LLV0
Length = 302
Score = 110 (43.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 33/119 (27%), Positives = 56/119 (47%)
Query: 87 LAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLF 146
+A+K F N +G P + V LY+ +G L +++ +TKW+TA S++A L
Sbjct: 59 IAVKTANIFPRNPERGDPMINGAVNLYSDHDGALSALVDFHLVTKWKTAGDSLLAALRL- 117
Query: 147 GRSGDKDLVLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTVTGSTKKGMATED 202
D VL ++G+G +AF A +LK +NR ++ + G+ D
Sbjct: 118 -ADPDAREVL-VVGAGTVGLSLCEAFGAGFPKARLKMWNRTRSKAEEVAARYAGLEVVD 174
Score = 38 (18.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 197 GMATEDVITAKLIYDKYQ 214
G A D++T++ I DK+Q
Sbjct: 284 GGAHLDLMTSRYILDKWQ 301
>CGD|CAL0004427 [details] [associations]
symbol:orf19.4735 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR016040 CGD:CAL0004427 Pfam:PF02423
GO:GO:0000166 Gene3D:3.40.50.720 EMBL:AACQ01000001
EMBL:AACQ01000002 eggNOG:COG2423 Gene3D:3.30.1780.10
InterPro:IPR003462 InterPro:IPR023401 RefSeq:XP_723231.1
RefSeq:XP_723422.1 ProteinModelPortal:Q5APN1 GeneID:3634788
GeneID:3635038 KEGG:cal:CaO19.12197 KEGG:cal:CaO19.4735
Uniprot:Q5APN1
Length = 350
Score = 111 (44.1 bits), Expect = 0.00038, P = 0.00038
Identities = 37/117 (31%), Positives = 51/117 (43%)
Query: 85 DSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKH 144
D + +KV++ N KGL VL+ + G+LK V+ +T +RTA AS +
Sbjct: 71 DEVGLKVISGGPGNNSKGL-GFQGCVLIMDEITGQLKAVLNANNLTAFRTALASSLGLTK 129
Query: 145 LFGRSGDKDLV-LAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKKGMAT 200
L S L L+ G G QAY H K L L Y + E + T K T
Sbjct: 130 LIAPSNANILPELSAFGVGLQAYWHIK-----LALLLYEGKIKEVNILNRTLKNAET 181
>UNIPROTKB|Q5APN1 [details] [associations]
symbol:CaO19.12197 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR016040 CGD:CAL0004427
Pfam:PF02423 GO:GO:0000166 Gene3D:3.40.50.720 EMBL:AACQ01000001
EMBL:AACQ01000002 eggNOG:COG2423 Gene3D:3.30.1780.10
InterPro:IPR003462 InterPro:IPR023401 RefSeq:XP_723231.1
RefSeq:XP_723422.1 ProteinModelPortal:Q5APN1 GeneID:3634788
GeneID:3635038 KEGG:cal:CaO19.12197 KEGG:cal:CaO19.4735
Uniprot:Q5APN1
Length = 350
Score = 111 (44.1 bits), Expect = 0.00038, P = 0.00038
Identities = 37/117 (31%), Positives = 51/117 (43%)
Query: 85 DSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKH 144
D + +KV++ N KGL VL+ + G+LK V+ +T +RTA AS +
Sbjct: 71 DEVGLKVISGGPGNNSKGL-GFQGCVLIMDEITGQLKAVLNANNLTAFRTALASSLGLTK 129
Query: 145 LFGRSGDKDLV-LAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKKGMAT 200
L S L L+ G G QAY H K L L Y + E + T K T
Sbjct: 130 LIAPSNANILPELSAFGVGLQAYWHIK-----LALLLYEGKIKEVNILNRTLKNAET 181
>UNIPROTKB|Q47UJ8 [details] [associations]
symbol:CPS_4886 "Putative ornithine cyclodeaminase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008473
"ornithine cyclodeaminase activity" evidence=ISS] [GO:0019466
"ornithine catabolic process via proline" evidence=ISS]
InterPro:IPR016040 Pfam:PF02423 GO:GO:0000166 Gene3D:3.40.50.720
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG2423
Gene3D:3.30.1780.10 InterPro:IPR003462 InterPro:IPR023401
PIRSF:PIRSF001439 HOGENOM:HOG000137263 KO:K01750 RefSeq:YP_271525.1
ProteinModelPortal:Q47UJ8 STRING:Q47UJ8 GeneID:3520735
KEGG:cps:CPS_4886 PATRIC:21472575 OMA:VKAGGYW
ProtClustDB:CLSK935201 BioCyc:CPSY167879:GI48-4887-MONOMER
GO:GO:0008473 GO:GO:0019466 Uniprot:Q47UJ8
Length = 345
Score = 110 (43.8 bits), Expect = 0.00049, P = 0.00049
Identities = 37/113 (32%), Positives = 58/113 (51%)
Query: 59 FMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNG 118
F I E G ++ G+ DG L +K + N K L + +TV+L++ D G
Sbjct: 61 FPVIREAIGHADALYGFKSGFDRDGM-VLGLKSGGYWPGNVQKDLTNHQSTVILFDPDTG 119
Query: 119 KLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA 171
+LK ++ G +T RTAA+S V+ HL R K VL ++G+G Q+ +A
Sbjct: 120 QLKSLVGGNYLTAVRTAASSAVSIAHL-ARKDSK--VLGMVGAGHQSTFQLRA 169
>TIGR_CMR|CPS_4886 [details] [associations]
symbol:CPS_4886 "putative ornithine cyclodeaminase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008473
"ornithine cyclodeaminase activity" evidence=ISS] [GO:0019466
"ornithine catabolic process via proline" evidence=ISS]
InterPro:IPR016040 Pfam:PF02423 GO:GO:0000166 Gene3D:3.40.50.720
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG2423
Gene3D:3.30.1780.10 InterPro:IPR003462 InterPro:IPR023401
PIRSF:PIRSF001439 HOGENOM:HOG000137263 KO:K01750 RefSeq:YP_271525.1
ProteinModelPortal:Q47UJ8 STRING:Q47UJ8 GeneID:3520735
KEGG:cps:CPS_4886 PATRIC:21472575 OMA:VKAGGYW
ProtClustDB:CLSK935201 BioCyc:CPSY167879:GI48-4887-MONOMER
GO:GO:0008473 GO:GO:0019466 Uniprot:Q47UJ8
Length = 345
Score = 110 (43.8 bits), Expect = 0.00049, P = 0.00049
Identities = 37/113 (32%), Positives = 58/113 (51%)
Query: 59 FMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNG 118
F I E G ++ G+ DG L +K + N K L + +TV+L++ D G
Sbjct: 61 FPVIREAIGHADALYGFKSGFDRDGM-VLGLKSGGYWPGNVQKDLTNHQSTVILFDPDTG 119
Query: 119 KLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA 171
+LK ++ G +T RTAA+S V+ HL R K VL ++G+G Q+ +A
Sbjct: 120 QLKSLVGGNYLTAVRTAASSAVSIAHL-ARKDSK--VLGMVGAGHQSTFQLRA 169
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 224 201 0.00089 111 3 11 22 0.37 33
31 0.45 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 36
No. of states in DFA: 593 (63 KB)
Total size of DFA: 158 KB (2094 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:05
No. of threads or processors used: 24
Search cpu time: 16.28u 0.06s 16.34t Elapsed: 00:00:11
Total cpu time: 16.28u 0.06s 16.34t Elapsed: 00:00:16
Start: Thu Aug 15 14:28:28 2013 End: Thu Aug 15 14:28:44 2013