RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13395
(224 letters)
>gnl|CDD|225280 COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin
homolog [Amino acid transport and metabolism].
Length = 330
Score = 125 bits (315), Expect = 2e-34
Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 8/163 (4%)
Query: 20 LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRT 79
LFLS+++VR LLD + V A+E + V P RL + P +G M Y+
Sbjct: 5 LFLSEDEVRALLDMDGAVDAVEEAFRAQADGRVAMPPRLRLDPPSFSGDFRIMLMYLP-- 62
Query: 80 GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
G D +K+V DN +GLP+V ++L++ + G+ +++ T +T RTAAAS
Sbjct: 63 ---GGDVAGVKIVGVHPDNPARGLPTVSGVIVLFDAETGEPLALLDATRLTALRTAAASA 119
Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKKYN 182
VA K+L R LAI+G+GAQA +A A +++
Sbjct: 120 VAAKYL-ARKDAS--TLAIIGAGAQARTQLEALKAVRDIREIR 159
Score = 28.8 bits (65), Expect = 2.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 197 GMATEDVITAKLIYDKYQAQ 216
G+A EDV AKL+Y++ +A
Sbjct: 302 GLALEDVAAAKLVYERAKAA 321
>gnl|CDD|217026 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/mu-crystallin
family. This family contains the bacterial Ornithine
cyclodeaminase enzyme EC:4.3.1.12, which catalyzes the
deamination of ornithine to proline. This family also
contains mu-Crystallin the major component of the eye
lens in several Australian marsupials, mRNA for this
protein has also been found in human retina.
Length = 313
Score = 107 bits (268), Expect = 6e-28
Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 8/164 (4%)
Query: 17 QPPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYI 76
+ L+ V + + L +E+ + + P R+ + + GV+ +MP Y+
Sbjct: 1 VVTMMLTRSDVGEETFLDDLANYVEAAFRRWANGAFDMPPRVALHSRDGRGVIEAMPAYL 60
Query: 77 KRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAA 136
G K V +N +GLP+V AT +L + D G +M+ T +T RTAA
Sbjct: 61 G-----GLKGAGFKWVNGHPENPDRGLPTVTATGVLNDPDTGYPLALMDATYLTALRTAA 115
Query: 137 ASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK 180
AS VA K+L LAI+G+GAQA A+A A L +++
Sbjct: 116 ASAVAAKYL-APPDAS--TLAIIGAGAQAEFQAEALSAVLPIEE 156
Score = 27.7 bits (62), Expect = 5.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 197 GMATEDVITAKLIYDK 212
G A EDV A+L+Y++
Sbjct: 293 GFAVEDVAAARLVYER 308
>gnl|CDD|180367 PRK06046, PRK06046, alanine dehydrogenase; Validated.
Length = 326
Score = 93.6 bits (233), Expect = 9e-23
Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 10/154 (6%)
Query: 20 LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRT 79
L+L+ E V+ LLD +S + A+E + +V P + ++ + NG L +MP Y++
Sbjct: 4 LWLTQEDVKSLLDMDSAIEAVERAFRQHGLGKVQMPPKSYLYFEKYNGDLRTMPAYLE-- 61
Query: 80 GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
D +K+V N +GLP+V+A ++L + + G +M+GT +T RT AA
Sbjct: 62 ---ELDIAGVKIVNVHPGNPDRGLPTVMAVIILNSPETGFPLAIMDGTYLTDMRTGAAGG 118
Query: 140 VATKHLFGRSGDKDL-VLAIMGSGAQAYIHAKAF 172
VA K+L KD V+ I+G+G QA A
Sbjct: 119 VAAKYL----ARKDSKVVGIIGAGNQARTQLLAL 148
Score = 28.1 bits (63), Expect = 3.5
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 187 EGTVTGSTKKGMATEDVITAKLIYDK 212
E T+ ST G+A +D+ TA L+Y++
Sbjct: 290 EITIFDST--GLAIQDIATAWLVYER 313
>gnl|CDD|236313 PRK08618, PRK08618, ornithine cyclodeaminase; Validated.
Length = 325
Score = 93.2 bits (232), Expect = 1e-22
Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 11/167 (6%)
Query: 20 LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRT 79
L LS E + L + + A + + S+ + I P R + P N L MPGY
Sbjct: 2 LVLSAEDQKKLFNMNEAIEADKEALKAYSEGKTITPLRTNLPFPNENNTSLIMPGYA--- 58
Query: 80 GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
+G ++L +K+V+ +NK KG P++ TV+L + + G++ +++GT +T+ RT A S
Sbjct: 59 --EGLEALGLKIVSVVPENKKKGKPTIPGTVILSDFETGEVLAILDGTYLTQIRTGALSG 116
Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNR 183
VATK+L R K L ++G+G QA +A A +++ Y+R
Sbjct: 117 VATKYL-AREDAK--TLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR 160
>gnl|CDD|235996 PRK07340, PRK07340, ornithine cyclodeaminase; Validated.
Length = 304
Score = 90.8 bits (226), Expect = 7e-22
Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 13/148 (8%)
Query: 30 LLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAI 89
LL + +L A+ + ++ + + P RL + + GVLLSMP + D LAI
Sbjct: 13 LLPYPALADALAAALLDYAAGRIQSPERLVVPLQG-GGVLLSMPA----SAAD----LAI 63
Query: 90 -KVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGR 148
K+VT N +GLP++ V++ + G+ +++G +T RTAA S++A + L
Sbjct: 64 TKLVTVCPGNAARGLPTIQGEVVVADAATGERLFLLDGPTVTGRRTAAVSLLAARTLAPA 123
Query: 149 SGDKDLVLAIMGSGAQAYIHAKAFHASL 176
DL+ ++G+G QA H +AF A L
Sbjct: 124 P-PGDLL--LIGTGVQARAHLEAFAAGL 148
>gnl|CDD|180421 PRK06141, PRK06141, ornithine cyclodeaminase; Validated.
Length = 314
Score = 89.2 bits (222), Expect = 3e-21
Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 17/159 (10%)
Query: 20 LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIP---EVNGVLLSMPGYI 76
L + EQ R L + +L+ A+ + + P R + E LL MP +
Sbjct: 2 LVIDAEQTRQALPFPALIEALRDAFAR----GCVMPVRHVHSLEVPGEAQATLLLMPAW- 56
Query: 77 KRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAA 136
+ + +K VT F N +GLP + +T LL++ G+ +++GTE+T RTAA
Sbjct: 57 -----NEGRYIGVKAVTVFPGNPARGLPGLHSTYLLFDGRTGEPLALVDGTELTARRTAA 111
Query: 137 ASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHAS 175
AS +A +L + + LV+ G+G A + A A HAS
Sbjct: 112 ASALAASYLARKDASRLLVV---GTGRLASLLALA-HAS 146
>gnl|CDD|131424 TIGR02371, ala_DH_arch, alanine dehydrogenase, Archaeoglobus
fulgidus type. This enzyme, a homolog of bacterial
ornithine cyclodeaminases and marsupial mu-crystallins,
is a homodimeric, NAD-dependent alanine dehydrogenase
found in Archaeoglobus fulgidus and several other
Archaea. For a number of close homologs, scoring between
trusted and noise cutoffs, it is not clear at present
what is the enzymatic activity.
Length = 325
Score = 79.2 bits (195), Expect = 2e-17
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 8/152 (5%)
Query: 20 LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRT 79
L L+ E+V LL+ + + A+E + + +V P ++++ NG L MP Y+
Sbjct: 3 LVLTQEEVESLLNMDDCMKAVEGAFRQEALGKVQMPPKMYLFFRRYNGDLRVMPAYL--- 59
Query: 80 GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
+ + +K V N + LP+V+A ++L + + G +M+GT IT RT AA
Sbjct: 60 --EELEMAGVKCVNVHPGNPDRHLPTVMALIILVSPETGFPIALMDGTYITDMRTGAAGG 117
Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA 171
VA K+L + VL I+G+G QA+ +A
Sbjct: 118 VAAKYLARKDSS---VLGIIGAGRQAWTQLEA 146
>gnl|CDD|188459 TIGR03944, dehyd_SbnB_fam, 2,3-diaminopropionate biosynthesis
protein SbnB. Members of this protein family are
probable NAD-dependent dehydrogenases related to the
alanine dehydrogenase of Archaeoglobus fulgidus (see
TIGR02371, PDB structure 1OMO and PMID:15313611) and
more distantly to ornithine cyclodeaminase. Members
include the staphylobactin biosynthesis protein SbnB and
tend to occur in contexts suggesting non-ribosomal
peptide synthesis, always adjacent to (occasionally
fused with) a pyridoxal phosphate-dependent enzyme,
SbnA. The pair appears to provide 2,3-diaminopropionate
for biosynthesis of siderophores or other secondary
metabolites [Cellular processes, Biosynthesis of natural
products].
Length = 327
Score = 67.6 bits (166), Expect = 2e-13
Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 13/160 (8%)
Query: 20 LFLSDEQVRDLL-DWES-LVPAIESVMVKVSKKEVIQPARLFMRIPE--VNGVLLSMPGY 75
L+L+ V LL E L+ +E + + + +QP F+R P+ N ++ ++P Y
Sbjct: 2 LYLNGADVEALLAGREQALIDLVEEAYLAHAAGDTVQPDSPFLRFPDEPANRII-ALPAY 60
Query: 76 IKRTGPDGEDSLA-IKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRT 134
+ G+ +A IK + SF N +GLP A ++L + D G ++EG+ I+ RT
Sbjct: 61 L-----GGDFPVAGIKWIASFPGNPQRGLPRASAVIILNDPDTGYPVAILEGSLISAMRT 115
Query: 135 AAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHA 174
AA++ +A +HL G + I+G G A + A
Sbjct: 116 AASAALAARHLAAGRGFTR--VGIIGCGPIAREILRFLLA 153
>gnl|CDD|236221 PRK08291, PRK08291, ectoine utilization protein EutC; Validated.
Length = 330
Score = 65.0 bits (159), Expect = 1e-12
Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 36/165 (21%)
Query: 22 LSDEQVRDL--LDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRT 79
L++ ++R L LD ++ + +E+ ++ V P L + IPE G + YI
Sbjct: 7 LTEAELRALVPLDLDA-IDCVEAAFAALATGAVAMPPILRLDIPEHRGEVDVKTAYIP-- 63
Query: 80 GPDGEDSLAIKVVTSFTDNKVKGLPS-------------VLATVLLYNTDNGKLKVVMEG 126
G DS AIKV F DN GLPS ++ +LL DNG L V
Sbjct: 64 ---GLDSFAIKVSPGFFDNPKLGLPSLNGLMVVLSARTGLVEALLL---DNGYLTDV--- 114
Query: 127 TEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA 171
RTAAA VA +HL + + A++G+G QA + +A
Sbjct: 115 ------RTAAAGAVAARHL---AREDASRAAVIGAGEQARLQLEA 150
>gnl|CDD|132037 TIGR02992, ectoine_eutC, ectoine utilization protein EutC. Members
of this protein family are EutA, a predicted
arylmalonate decarboxylase found in a conserved ectoine
utilization operon of species that include Sinorhizobium
meliloti 1021 (where it is known to be induced by
ectoine), Mesorhizobium loti, Silicibacter pomeroyi,
Agrobacterium tumefaciens, and Pseudomonas putida. This
family belongs to the ornithine
cyclodeaminase/mu-crystallin family (pfam02423).
Length = 326
Score = 63.0 bits (153), Expect = 1e-11
Identities = 49/155 (31%), Positives = 84/155 (54%), Gaps = 12/155 (7%)
Query: 20 LFLSDEQVRDL--LDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIK 77
L L++ ++R+ LD ++ + +E+ ++ +V+ P L + IPE NG + Y+
Sbjct: 2 LILTEAELRECVPLDLDA-IDCVENAFAALATGKVVMPPILRLDIPEHNGEVDVKTAYVP 60
Query: 78 RTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLK-VVMEGTEITKWRTAA 136
G D AIKV F DN GLPS+ ++L ++ G L+ ++++ +T RTAA
Sbjct: 61 -----GLDGFAIKVSPGFFDNPKLGLPSLNGMMVLLSSRTGLLQALLLDNGYLTDVRTAA 115
Query: 137 ASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA 171
A VA +HL + + V+AI G+G QA + +A
Sbjct: 116 AGAVAARHL---AREDSSVVAIFGAGMQARLQLEA 147
>gnl|CDD|236064 PRK07589, PRK07589, ornithine cyclodeaminase; Validated.
Length = 346
Score = 57.2 bits (139), Expect = 9e-10
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 10/111 (9%)
Query: 66 NGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVME 125
+GV+ MP T DGE + K V N +GL +V+A +L + D G ++ E
Sbjct: 52 DGVIELMP-----TS-DGEL-YSFKYVNGHPKNTRRGLQTVMAFGVLADVDTGYPLLLSE 104
Query: 126 GTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASL 176
T +T RTAA S +A K+L R + +A++G+GAQ+ A AF A L
Sbjct: 105 MTLLTALRTAATSALAAKYL-ARPDSR--TMALIGNGAQSEFQALAFKALL 152
>gnl|CDD|136070 PRK06823, PRK06823, ornithine cyclodeaminase; Validated.
Length = 315
Score = 50.2 bits (120), Expect = 2e-07
Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 11/149 (7%)
Query: 22 LSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGP 81
L+ +++ D + ++ + S+ V P + + NG GY++
Sbjct: 4 LNKQKILAKFDADRATLLLKEGFIAFSQGRVQMPPVQHLLFDQANGDCCIKSGYLQ---- 59
Query: 82 DGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVM--EGTEITKWRTAAASV 139
G+D +KV T F DN +GLPS +L ++ G+ + ++ EG +T RTA A
Sbjct: 60 -GDDQFVVKVSTGFYDNPAQGLPSNQGLMLAFSAKTGEPQALLLDEGW-LTALRTALAGR 117
Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIH 168
+ + L + + I+G+G QA +
Sbjct: 118 IVARLLAPQHVSA---IGIVGTGIQARMQ 143
>gnl|CDD|235738 PRK06199, PRK06199, ornithine cyclodeaminase; Validated.
Length = 379
Score = 38.5 bits (90), Expect = 0.002
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 15/110 (13%)
Query: 69 LLSMPGYI----KRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVM 124
++MP Y+ + G +K S N+ KGLP + +L + D G +M
Sbjct: 78 FMAMPAYLGGRFRTAG--------VKWYGSNIANREKGLPRSILMFVLNDADTGAPLAIM 129
Query: 125 EGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHA 174
++ +RT A V +HL R K V+ ++G G AF A
Sbjct: 130 SANLLSAYRTGAVPGVGARHL-ARKDSK--VVGLLGPGVMGKTILAAFMA 176
>gnl|CDD|180556 PRK06407, PRK06407, ornithine cyclodeaminase; Provisional.
Length = 301
Score = 35.7 bits (82), Expect = 0.012
Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 18/145 (12%)
Query: 21 FLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTG 80
++S++ V L+ + + A+ + R+ R VL +MP Y+++
Sbjct: 3 YISEDDVLRNLNMKECIGALREAFEEYGAGRANSSTRV--RTFSPGHVLNTMPAYMEKYH 60
Query: 81 PDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVV 140
G + N + + VLL++ +N +L + E + + RT A +
Sbjct: 61 IAGLKTY------IAGRNGARFV------VLLFDVNNPELVAIFEANRLGQIRTGAVTAY 108
Query: 141 ATKHLFGRSGDKDLVLAIMGSGAQA 165
AT L I+GSG QA
Sbjct: 109 ATSILHKNV----ENFTIIGSGFQA 129
>gnl|CDD|179235 PRK01153, PRK01153, nicotinamide-nucleotide adenylyltransferase;
Provisional.
Length = 174
Score = 29.5 bits (67), Expect = 0.90
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 25/60 (41%)
Query: 17 QPPLF----LSDEQVRDLL----DWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGV 68
QPP+F S ++R + WE LVP +SV +V I E++GV
Sbjct: 118 QPPMFNREEYSGTEIRRRMIEGDPWEELVP--KSV-AEV--------------IKEIDGV 160
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 29.8 bits (67), Expect = 1.2
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 97 DNKVKGL-PSVLATVLLYNTDNGKLKVVMEGTE 128
D K+KGL PS++A +LLY+ + K +M+
Sbjct: 247 DEKLKGLFPSLVAYMLLYSENPNNYKSLMQQKN 279
>gnl|CDD|220504 pfam09987, DUF2226, Uncharacterized protein conserved in archaea
(DUF2226). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 252
Score = 28.8 bits (64), Expect = 2.3
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 32 DWESLVPAIESVMV-KVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIK 90
E L ++ S +V + E +++ + GV + +IKR D E +L
Sbjct: 181 PLEELKNSLISTAELRVLRMEGTVDVLVYLDVKVEEGVDERILEFIKR---DLEHAL--- 234
Query: 91 VVTSFTDNKVKGLPSV 106
D +K SV
Sbjct: 235 -SEFSIDGSIKEKESV 249
>gnl|CDD|221194 pfam11736, DUF3299, Protein of unknown function (DUF3299). This
is a family of bacterial proteins of unknown function.
Length = 144
Score = 27.2 bits (61), Expect = 4.8
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 16/62 (25%)
Query: 31 LDWESLVPA----------------IESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPG 74
LDW+ L+P ++ + +Q + +PE++G + +PG
Sbjct: 1 LDWDDLIPEGDPEALLNPLELLDQISDAPEADEALDAAMQQSASAPVVPELDGKKVRIPG 60
Query: 75 YI 76
++
Sbjct: 61 FV 62
>gnl|CDD|217421 pfam03200, Glyco_hydro_63, Mannosyl oligosaccharide glucosidase.
This is a family of eukaryotic enzymes belonging to
glycosyl hydrolase family 63. They catalyze the specific
cleavage of the non-reducing terminal glucose residue
from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide
glucosidase EC:3.2.1.106 is the first enzyme in the
N-linked oligosaccharide processing pathway.
Length = 775
Score = 27.3 bits (61), Expect = 7.1
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 68 VLLSMPGYIKRTGPDGE-DSLAIKVVTSFTDNKVKGLPSVL 107
+LL + G I G +LA +VVT KV
Sbjct: 1 ILLVILGIISYFLLLGYLSTLAERVVTPLDAPKVNDPSQFS 41
>gnl|CDD|240658 cd12181, ceo_syn, N(5)-(carboxyethyl)ornithine synthase.
N(5)-(carboxyethyl)ornithine synthase (ceo_syn)
catalyzes the NADP-dependent conversion of
N5-(L-1-carboxyethyl)-L-ornithine to L-ornithine +
pyruvate. Ornithine plays a key role in the urea cycle,
which in mammals is used in arginine biosynthesis, and
is a precursor in polyamine synthesis. ceo_syn is
related to the NAD-dependent L-alanine dehydrogenases.
Like formate dehydrogenase and related enzymes, ceo_syn
is comprised of 2 domains connected by a long alpha
helical stretch, each resembling a Rossmann fold
NAD-binding domain. The NAD-binding domain is inserted
within the linear sequence of the more divergent
catalytic domain. These ceo_syn proteins have a
partially conserved NAD-binding motif and active site
residues that are characteristic of related enzymes such
as Saccharopine Dehydrogenase.
Length = 295
Score = 27.2 bits (61), Expect = 7.9
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 137 ASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLT 186
A+V+ L+G + + +A++G G A A A LK +T
Sbjct: 138 AAVLHALQLYGITPYRQTKVAVLGFGNTAR---GAIRA---LKLGGADVT 181
>gnl|CDD|183587 PRK12550, PRK12550, shikimate 5-dehydrogenase; Reviewed.
Length = 272
Score = 26.8 bits (60), Expect = 8.0
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 29/78 (37%)
Query: 113 YNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAF 172
YNTD A A ++A+ + DLV+A+ GSG AKA
Sbjct: 103 YNTD----------------YIAIAKLLASYQV-----PPDLVVALRGSGGM----AKAV 137
Query: 173 HASLKLKKYNRGLTEGTV 190
A+L+ + G T+GT+
Sbjct: 138 AAALR----DAGFTDGTI 151
>gnl|CDD|182951 PRK11085, PRK11085, magnesium/nickel/cobalt transporter CorA;
Provisional.
Length = 316
Score = 27.0 bits (60), Expect = 9.5
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 25 EQVRDLL-DWESLVPAIESVMVKVSKKEVIQPARLFMRI 62
EQ R++L D ESL+P ES+ KV+ ++Q A F+ I
Sbjct: 214 EQAREILRDIESLLPHNESLFQKVNF--LMQAAMGFINI 250
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.129 0.362
Gapped
Lambda K H
0.267 0.0767 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,879,251
Number of extensions: 1009273
Number of successful extensions: 649
Number of sequences better than 10.0: 1
Number of HSP's gapped: 633
Number of HSP's successfully gapped: 30
Length of query: 224
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 131
Effective length of database: 6,812,680
Effective search space: 892461080
Effective search space used: 892461080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (25.7 bits)