RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13395
         (224 letters)



>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida
           [TaxId: 303]}
          Length = 340

 Score =  115 bits (288), Expect = 2e-31
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 21/169 (12%)

Query: 20  LFLSDEQVRDLLD-------WESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSM 72
            F+    + DL+           L  A+     +    +  + AR+        GV+  M
Sbjct: 2   YFIDVPTMSDLVHDIGVAPFIGELAAALRDDFKRWQAFD--KSARVASHSE--VGVIELM 57

Query: 73  PGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKW 132
           P          +   A K V     N  + L +V+A  +L + D+G   ++ E T  T  
Sbjct: 58  PVA-------DKSRYAFKYVNGHPANTARNLHTVMAFGVLADVDSGYPVLLSELTIATAL 110

Query: 133 RTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKKY 181
           RTAA S++A + L   +      +A++G+GAQ+   A AFH  L +++ 
Sbjct: 111 RTAATSLMAAQAL---ARPNARKMALIGNGAQSEFQALAFHKHLGIEEI 156



 Score = 29.3 bits (65), Expect = 0.32
 Identities = 4/20 (20%), Positives = 9/20 (45%)

Query: 197 GMATEDVITAKLIYDKYQAQ 216
           G A ED    + +  + + +
Sbjct: 294 GFALEDYTVLRYVLQQAEKR 313


>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 320

 Score =  109 bits (273), Expect = 3e-29
 Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 12/164 (7%)

Query: 20  LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRT 79
           L L+ E+V  L+  +  + A+E      +  +   P ++++      G L +MP ++   
Sbjct: 4   LILTQEEVESLISMDEAMNAVEEAFRLYALGKAQMPPKVYLEFE--KGDLRAMPAHL--- 58

Query: 80  GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
                    +K V S   N  KGLP+V+A ++L + + G    VM+ T  T  RT AA  
Sbjct: 59  ----MGYAGLKWVNSHPGNPDKGLPTVMALMILNSPETGFPLAVMDATYTTSLRTGAAGG 114

Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKKYNR 183
           +A K+L  +      V   +G G QAY   +A      + +   
Sbjct: 115 IAAKYLARK---NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKA 155



 Score = 29.9 bits (66), Expect = 0.27
 Identities = 7/20 (35%), Positives = 14/20 (70%)

Query: 197 GMATEDVITAKLIYDKYQAQ 216
           G+A +DV  AK++Y+   ++
Sbjct: 292 GLAIQDVAVAKVVYENALSK 311


>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
           domain {Simian virus 40 [TaxId: 10633]}
          Length = 362

 Score = 26.6 bits (58), Expect = 2.4
 Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 9/86 (10%)

Query: 16  NQPPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMR-IPEVNGVLLSMPG 74
           ++  +        D+ +W + V  +  ++ K+    V    +  +  IP+    L   P 
Sbjct: 105 DRMDIMFGSTGSADIEEWMAGVAWLHCLLPKM-DSVVYDFLKCMVYNIPKKRYWLFKGP- 162

Query: 75  YIKRTGPDGEDSLAIKVVTSFTDNKV 100
                  D   +     +      K 
Sbjct: 163 ------IDSGKTTLAAALLELCGGKA 182


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.129    0.362 

Gapped
Lambda     K      H
   0.267   0.0587    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 760,981
Number of extensions: 32762
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 8
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.7 bits)