BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13396
         (328 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|321477962|gb|EFX88920.1| hypothetical protein DAPPUDRAFT_206450 [Daphnia pulex]
          Length = 406

 Score =  346 bits (888), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 174/326 (53%), Positives = 226/326 (69%), Gaps = 9/326 (2%)

Query: 8   ESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNEL 65
           E   E +  YYKR+FPYGPY RWL YGN+    F  REFSFTL  DIY RY S+   +EL
Sbjct: 3   EQNEEAMLTYYKRLFPYGPYFRWLNYGNMKEHYFHNREFSFTLPDDIYIRYQSFKDQDEL 62

Query: 66  KKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
           ++++ K  PQKIDLGA+Y+  PK+H   S F P  KELVFDIDMTDYDDVRNCC GADIC
Sbjct: 63  EEEMKKMKPQKIDLGAVYNHRPKNHRSISHFIPMEKELVFDIDMTDYDDVRNCCQGADIC 122

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
           +KCW++M +A K+LD ALR+DF +Q LLWVFSGRRG+HCWVCD+AA ALD   RS +AEY
Sbjct: 123 DKCWKFMVVAIKVLDAALRDDFGYQHLLWVFSGRRGVHCWVCDDAARALDQSARSAVAEY 182

Query: 186 MSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEKLL-EEQELLSTKERQTKVLGLV 242
           + ++       KKV    + LHP + RA  I+ED FE ++ ++Q++L ++E   K L ++
Sbjct: 183 LQIIKGGEQQNKKVSFNYEHLHPAVSRAARIVEDHFESMMVKDQDILGSEEAIKKFLTMI 242

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRL 302
           S+  +R  +EK  + +       +W R+   +     KN  R+L +  EEI+L+L YPRL
Sbjct: 243 SDEKLRNTLEK--SMLSYHDSASRW-RVFEELTASTNKNK-RQLSHLKEEIMLQLTYPRL 298

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           DI+VSK +NHLLKSPFCVHPKTGKIC
Sbjct: 299 DINVSKQLNHLLKSPFCVHPKTGKIC 324


>gi|340724314|ref|XP_003400527.1| PREDICTED: DNA primase small subunit-like [Bombus terrestris]
          Length = 415

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 168/328 (51%), Positives = 227/328 (69%), Gaps = 7/328 (2%)

Query: 6   DPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNEL 65
           D  +L +MLP YY R+FP+  Y RWL YGN++ F  REFSFTL GDIY R+ S+ S  EL
Sbjct: 3   DVANLADMLPTYYTRLFPFHDYYRWLSYGNVNVFTHREFSFTLQGDIYLRFQSFKSAKEL 62

Query: 66  KKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
           + ++ +  P KID+GA+Y++ PKD  + + F P  +ELVFDIDMTDYDDVR CCSGADIC
Sbjct: 63  EYEIKRLLPFKIDIGAVYNLSPKDQRKGTNFHPVERELVFDIDMTDYDDVRTCCSGADIC 122

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
            KCW++M++ACKILD+ALR DF ++ +LWVFSGRRGIHCWVCD +A +L    R  +AEY
Sbjct: 123 CKCWKFMALACKILDSALRLDFGYKHILWVFSGRRGIHCWVCDPSARSLTATERGAVAEY 182

Query: 186 MSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLV 242
           + ++       KKV L GD +H  +KRA  +IE  F    +EEQ +L T E   K L ++
Sbjct: 183 LQIVEGGEYMKKKVNLPGDRIHHSIKRALEMIEAVFVPFCIEEQNILGTDEGMEKFLQII 242

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDR--KLKYAIEEILLELAYP 300
           S+ + R E++  + +    +D  +WD  V  +K+ +     +  + ++ IEE++L+ AYP
Sbjct: 243 SDDEDRQELKAFFGQCSSSKD--RWDSFVKYVKNKKTTGDKKWYQYRHLIEEVMLQYAYP 300

Query: 301 RLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           RLDI VSKG+NHLLKSPFCVHPKTGKIC
Sbjct: 301 RLDIAVSKGLNHLLKSPFCVHPKTGKIC 328


>gi|390334961|ref|XP_791278.3| PREDICTED: DNA primase small subunit-like [Strongylocentrotus
           purpuratus]
          Length = 428

 Score =  340 bits (873), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 174/331 (52%), Positives = 224/331 (67%), Gaps = 12/331 (3%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           Y P++L E+LP YYKR+FP+GPY RWL YG      F  REFSFTL  DIY RY S++  
Sbjct: 14  YSPDTLPELLPVYYKRLFPFGPYYRWLNYGGAPKSYFLNREFSFTLENDIYIRYQSFSDQ 73

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           NE++K++ KRCP KID+GA++   PKDH  L+ + F  + KELVFDIDMTDYDDVR+CC 
Sbjct: 74  NEMEKEIQKRCPYKIDIGAVFTHKPKDHRTLKAAAFQAQEKELVFDIDMTDYDDVRSCCQ 133

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           GADIC KCW  M+IA KI+D+AL EDF F+  LWV+SGRRG+HCWVCDEAA  L    RS
Sbjct: 134 GADICSKCWPLMTIAIKIVDSALYEDFGFEHRLWVYSGRRGVHCWVCDEAARKLSQNARS 193

Query: 181 CLAEYMSVLTA--NPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTK 237
            +AEY+S++    N VKKV L  D LHP ++RAK +I   FE   L +Q++L  KE   K
Sbjct: 194 AIAEYLSIVKGGENQVKKVSLP-DQLHPSVERAKQVIVSYFEDYALNKQDILGDKESWKK 252

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLEL 297
           VL LV   D +  +E + T+      +E+W  L   +    +    ++    + EI  + 
Sbjct: 253 VLALVP--DDKGHLENDMTK--GSNSLERWKLLRERVSREVSVGRAKRCGQLVAEIAFQY 308

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            YPRLD++VSKGVNHLLKSPFCVHPKTG++C
Sbjct: 309 CYPRLDVNVSKGVNHLLKSPFCVHPKTGRVC 339


>gi|170028027|ref|XP_001841898.1| DNA primase small subunit [Culex quinquefasciatus]
 gi|167868368|gb|EDS31751.1| DNA primase small subunit [Culex quinquefasciatus]
          Length = 429

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 163/334 (48%), Positives = 230/334 (68%), Gaps = 9/334 (2%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYN 60
           DK+DP SL ++LP YY+R+FP+  + RW+ YG      F  REFSFTL  DIY RY S+ 
Sbjct: 13  DKFDPASLNDLLPLYYRRLFPHLQFYRWMSYGLSEPSVFTNREFSFTLQDDIYIRYQSFE 72

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           + +EL+K++  + P KID+GA++++ PKDH   +V  P  +ELVFDIDMTDYD++R CCS
Sbjct: 73  NQSELEKEICAKNPSKIDIGAVFNVRPKDHRASTVMKPVQRELVFDIDMTDYDEIRTCCS 132

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            A++C KCW++M+IACKI+D ALREDF F+ LLWVFSGRRGIHCW+ D+ A  LD RGR+
Sbjct: 133 EANVCPKCWKFMTIACKIIDAALREDFGFEHLLWVFSGRRGIHCWISDKVARYLDTRGRA 192

Query: 181 CLAEYMSVLTA---NPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
            +AEY+++L +     V KV +  D +H  +KRA  IIE  FE++ L +Q++  T     
Sbjct: 193 AVAEYLNILISGGEGTVTKVNINTDRMHHAVKRAHRIIEPYFEEICLVDQDMFGTPNGLR 252

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQ--AKNSDRKLKYAIEEIL 294
           K+L +V +   R +++K+  +   G     W   V   +  +   KN +RKL++ +EE+ 
Sbjct: 253 KLLAMVQDDGARMDLDKKL-KPHEGDSKAIWKAFVNFFEARRITGKNRNRKLRHVVEEVQ 311

Query: 295 LELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           L + YPR+DI+VSKG NHLLK+PFCVHPKTGK+C
Sbjct: 312 LAVTYPRIDINVSKGFNHLLKAPFCVHPKTGKVC 345


>gi|350397738|ref|XP_003484976.1| PREDICTED: DNA primase small subunit-like [Bombus impatiens]
          Length = 415

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 166/328 (50%), Positives = 227/328 (69%), Gaps = 7/328 (2%)

Query: 6   DPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNEL 65
           D  +L ++LP YY R+FP+  Y RWL YGN++ F  REFSFTL GDIY R+ S+ S  EL
Sbjct: 3   DVANLADLLPTYYTRLFPFHDYYRWLSYGNVNVFTHREFSFTLQGDIYLRFQSFKSAKEL 62

Query: 66  KKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
           + ++ +  P KID+GA+Y++ PKD  + + F P  +ELVFDIDMTDYDDVR CCSGADIC
Sbjct: 63  EYEIKRLLPIKIDIGAVYNLSPKDQRKGTNFHPVERELVFDIDMTDYDDVRTCCSGADIC 122

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
            KCW++M++ACKILD+ALR DF ++ +LW+FSGRRGIHCWVCD +A +L    R  +AEY
Sbjct: 123 YKCWKFMALACKILDSALRLDFGYKHILWIFSGRRGIHCWVCDPSARSLTAIERGAVAEY 182

Query: 186 MSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLV 242
           + ++       KKV L GD +H  +KRA  +IE  F    +EEQ +L T E   K L ++
Sbjct: 183 LQIVEGGEYMKKKVNLPGDRIHHSVKRALEMIEAVFVPFCIEEQNILGTDEGMEKFLQII 242

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDR--KLKYAIEEILLELAYP 300
           S+ + R E++  + +    +D  +WD  V  +K+ +     +  + ++ IEE++L+ AYP
Sbjct: 243 SDDEDRQELKAFFGQCSSSKD--RWDSFVKYVKNKKTTGDKKWYQYRHLIEEVMLQYAYP 300

Query: 301 RLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           RLDI VSKG+NHLLKSPFCVHPKTGKIC
Sbjct: 301 RLDIAVSKGLNHLLKSPFCVHPKTGKIC 328


>gi|198436190|ref|XP_002129877.1| PREDICTED: similar to DNA primase small subunit (DNA primase 49 kDa
           subunit) (p49) [Ciona intestinalis]
          Length = 436

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 167/333 (50%), Positives = 219/333 (65%), Gaps = 12/333 (3%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN----FRKREFSFTLNGDIYARYISYN 60
           YDP SL  +LP YY  IFPYGPY +WLFYG+       F KREFSFTL  DIY RY S+ 
Sbjct: 12  YDPNSLPSLLPIYYNYIFPYGPYCKWLFYGSKTGSGSLFEKREFSFTLQNDIYVRYQSFA 71

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           S  E +K+L K  P KID+GAIY   PK  + +    F P  KELVFDIDMTDYDDVR C
Sbjct: 72  SEAEFRKELKKMNPYKIDIGAIYSAPPKHRNRVSGGSFKPLTKELVFDIDMTDYDDVRKC 131

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           C GADIC+KCW  MSIA KIL+ AL++DF F+ LLWV+SGRRG+HCWVCDE A +L    
Sbjct: 132 CQGADICKKCWTLMSIAIKILNRALKDDFGFKHLLWVYSGRRGVHCWVCDEKARSLSAHA 191

Query: 179 RSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTK 237
           RS + EY+S++ A   +K     D +HP+++    +I   ++K  +E+Q  L   +   K
Sbjct: 192 RSSIVEYLSLIQAGNHEKRVTLRDPVHPYIRNCHQVIRSYWDKYAIEDQGFLDEDKDVAK 251

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRL--VAIIKHHQAKNSDRKLKYAIEEILL 295
           VL L+S+ D+R ++EK++         E+W +L       +      +RKL+Y   EI++
Sbjct: 252 VLKLISDLDVREKVEKQF---AGKNSAERWKKLRETCTSTYESDPKRNRKLRYTSHEIMM 308

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           E  +PRLD++VSKG+NHLLKSPFCVHPKTG++C
Sbjct: 309 EFCFPRLDVNVSKGINHLLKSPFCVHPKTGRVC 341


>gi|196006934|ref|XP_002113333.1| hypothetical protein TRIADDRAFT_26575 [Trichoplax adhaerens]
 gi|190583737|gb|EDV23807.1| hypothetical protein TRIADDRAFT_26575 [Trichoplax adhaerens]
          Length = 400

 Score =  337 bits (864), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 170/344 (49%), Positives = 229/344 (66%), Gaps = 17/344 (4%)

Query: 1   MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYIS 58
           ++ KYD   L +++  YYKR+FPY  Y +WL YGN+    F  REFSFTL  DIY RY+S
Sbjct: 11  LSVKYDLTDLPQLMAVYYKRLFPYQLYYKWLSYGNVSKNYFANREFSFTLKDDIYVRYLS 70

Query: 59  YNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVR 116
           ++  NE++K++ KR P KIDLGA+Y   PKD   +++S F P+ KELVFDIDMTDYD++R
Sbjct: 71  FSDKNEMQKEIQKRSPYKIDLGAVYSFRPKDRNMIKNSSFQPEEKELVFDIDMTDYDEIR 130

Query: 117 NCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDG 176
           +CCSGA+IC KCW +M++A KILD ALREDF F  LLWV+SGRRGIHCWVCD AA  L  
Sbjct: 131 SCCSGAEICSKCWPFMTVAMKILDAALREDFGFHHLLWVYSGRRGIHCWVCDAAARKLSQ 190

Query: 177 RGRSCLAEYMSVLTANP--VKKV-FLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTK 232
             RS +AEY++++      VK+V F     LHP ++RA   IE  FE  LL++Q +L ++
Sbjct: 191 SARSAIAEYLTIIKGGEGHVKRVHFKNQAYLHPSIQRALKTIESYFEDLLLKKQNILESE 250

Query: 233 ERQTKVLGLVSNGDIRAE--------IEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDR 284
           E   KVL L+ + +I  +        + +EW   G    ++KW  L   I+       + 
Sbjct: 251 ESSNKVLALIPDKNILKDQIRFYFFSLSEEWNNSGLSS-LQKWSLLKQKIEKDIVSTKNS 309

Query: 285 KLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            L + + EI L+  YPRLDI+VSKG+NHLLKSPFC+HPKTG++C
Sbjct: 310 VLTHCVAEIQLQYTYPRLDINVSKGINHLLKSPFCIHPKTGRVC 353


>gi|157104474|ref|XP_001648424.1| DNA primase [Aedes aegypti]
 gi|108869184|gb|EAT33409.1| AAEL014314-PA [Aedes aegypti]
          Length = 428

 Score =  337 bits (864), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 165/336 (49%), Positives = 231/336 (68%), Gaps = 14/336 (4%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYN 60
           +K++PES+ ++LP YYKR+FP+  + RW+ YG      F  REFSFTL  DIY RY S+ 
Sbjct: 13  EKFNPESMQDLLPIYYKRLFPHMQFYRWMSYGLSEPSVFTNREFSFTLQDDIYIRYQSFE 72

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           + +EL+K++  + P KID+GA+Y++ PKDH   +V  P  +ELVFDIDMTDYD++R CC+
Sbjct: 73  NQSELEKEICSKNPFKIDIGAVYNVRPKDHRASTVMKPVQRELVFDIDMTDYDEIRTCCN 132

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            A++C KCW++M+IACKI+D ALREDF F+ LLWVFSGRRGIHCWVCD++A  LD +GRS
Sbjct: 133 EANVCTKCWKFMTIACKIIDAALREDFGFEHLLWVFSGRRGIHCWVCDKSARHLDSKGRS 192

Query: 181 CLAEYMSVLTA---NPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
            +AEY+ +L +     V +V L GD +H  +KRA  IIE  FE++ L EQ +  T +   
Sbjct: 193 SVAEYLHILISGGEGSVTRVTL-GDRMHHSIKRAHKIIEPFFEEICLVEQNMFGTPDGLR 251

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGP--GQDVEKWDRLVAIIKHHQ--AKNSDRKLKYAIEE 292
           K+L +V +  +R ++++   ++ P  G     W    A  +  +   +N  R+ K+ IEE
Sbjct: 252 KLLAMVQDEGVRLDLDR---KLKPHVGNSKALWKAFEAFFESLRVSGQNKGRRFKHIIEE 308

Query: 293 ILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
             L   YPR+DI+VSKG NHLLK+PFCVHPKTGK+C
Sbjct: 309 TQLAFTYPRIDINVSKGFNHLLKAPFCVHPKTGKVC 344


>gi|332021893|gb|EGI62229.1| DNA primase small subunit [Acromyrmex echinatior]
          Length = 447

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 170/329 (51%), Positives = 224/329 (68%), Gaps = 9/329 (2%)

Query: 6   DPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNEL 65
           D   L ++LP YY R+FP+  Y RWL YGN   F KREFSFTL+ DIY RY S+N    L
Sbjct: 3   DVSDLLDLLPVYYSRLFPFADYHRWLSYGNAVTFSKREFSFTLSNDIYIRYQSFNDQKGL 62

Query: 66  KKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
             ++ +  P KID+GA+Y++ PKD  +   F P  +ELVFDIDMTDYD+VR CC GADIC
Sbjct: 63  SDEIKRMLPHKIDIGAVYNVQPKDQRRGPNFQPVERELVFDIDMTDYDEVRTCCKGADIC 122

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
            KCW++MS+ACKILD+ALR DF ++ LLW+FSGRRGIHCWVCD AA +L G+ R+ +AEY
Sbjct: 123 GKCWKFMSLACKILDSALRLDFGYKHLLWIFSGRRGIHCWVCDPAARSLSGQVRAAVAEY 182

Query: 186 MSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLV 242
           + ++       KKV LTGD +H  +KRA  II+  F E  ++EQ +L T+E   K L ++
Sbjct: 183 LQIIGGGEFMKKKVHLTGDKIHHSVKRALDIIDPVFVEMCVKEQNMLGTEEGIEKFLPIL 242

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK---LKYAIEEILLELAY 299
            N + R EI+  + +    +   +W+  +  I   +    DRK    ++ IEEI L+ +Y
Sbjct: 243 PNDEDRQEIKVLFDKESTSE--ARWNTFLQYIVSKRT-GGDRKWYLYRHLIEEIKLQYSY 299

Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           PRLDI+VSKG+NHLLKSPFCVHPKTGKIC
Sbjct: 300 PRLDINVSKGLNHLLKSPFCVHPKTGKIC 328


>gi|345497273|ref|XP_001601538.2| PREDICTED: DNA primase small subunit-like [Nasonia vitripennis]
          Length = 413

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 161/326 (49%), Positives = 221/326 (67%), Gaps = 6/326 (1%)

Query: 6   DPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNEL 65
           D  +L+++LP YY R+FPY  Y RWL YG    F +REFSFTL  DIY R+ S+N  ++L
Sbjct: 2   DESNLSDLLPLYYSRLFPYIDYYRWLSYGEASTFSRREFSFTLRDDIYIRFQSFNKIDDL 61

Query: 66  KKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
           K ++ + CP KID+GA+Y++ P +  +   F P  +E+V DIDMTDYD+VR+CCSGAD+C
Sbjct: 62  KNEIKRLCPHKIDIGAVYNVAPSNKGREIKFEPIQREVVIDIDMTDYDEVRSCCSGADVC 121

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
            KCW+YM +A KILD ALR+DF F  +LWVFSGRRGIHCWVCD+ A  L   GR  +A Y
Sbjct: 122 NKCWKYMVLAVKILDVALRDDFGFDHILWVFSGRRGIHCWVCDKKARFLTQNGRKAVAHY 181

Query: 186 MSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLVS 243
           + +++     KK       +H  +KRA  IIE  F K+ +EEQ +L T+ER TK LG+++
Sbjct: 182 LQLISGGEFTKKKVKLNRKMHYSVKRAVSIIEPYFTKMCMEEQNMLGTEERITKFLGILA 241

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD--RKLKYAIEEILLELAYPR 301
             D+R E++  + +      V+KW+  V   +      S   R+  + IEEI+++ AYPR
Sbjct: 242 EEDLRNEVKAIFDK--HSTSVKKWEAFVNHFREQTQSGSKKWRRTPHLIEEIIIQYAYPR 299

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKI 327
           LDI+V+KG+NHLLKSPFCVHPKTGK+
Sbjct: 300 LDINVTKGMNHLLKSPFCVHPKTGKV 325


>gi|307174599|gb|EFN65021.1| DNA primase small subunit [Camponotus floridanus]
          Length = 417

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 168/329 (51%), Positives = 223/329 (67%), Gaps = 9/329 (2%)

Query: 6   DPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNEL 65
           D   L ++LP YY R+FP+  Y RWL YGN   F KREFSFTL+ DIY RY S++    L
Sbjct: 3   DVSDLLDLLPVYYSRLFPFADYHRWLSYGNAATFSKREFSFTLSDDIYIRYQSFHDQKGL 62

Query: 66  KKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
             ++ +  P KID+GA+Y+  PKD  +   F P  +ELVFDIDMTDYD+VR CC GADIC
Sbjct: 63  SDEIKRLLPHKIDIGAVYNAQPKDQRRGPNFQPVERELVFDIDMTDYDEVRTCCKGADIC 122

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
            KCW++MS+ACKILD+ALR DF ++ +LWVFSGRRGIHCWVCD AA  L G+ R+ +AEY
Sbjct: 123 NKCWKFMSLACKILDSALRLDFGYKHILWVFSGRRGIHCWVCDSAARTLSGQVRAAVAEY 182

Query: 186 MSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLV 242
           + V+       KKV LTGD +H  +KRA  II+  F E  ++EQ +L T+E   K L ++
Sbjct: 183 LQVIGGGEFMKKKVHLTGDKIHHSIKRALDIIDPIFVEMCVKEQNMLGTEEGIEKFLPIL 242

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK---LKYAIEEILLELAY 299
            N + + E++  + +    +   +W   V  I+  + +  DRK    ++ IEE+ L+ +Y
Sbjct: 243 PNEEDKQEMKALFNKESTSE--ARWHAFVQYIESKRTE-GDRKWYLYRHLIEEVKLQYSY 299

Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           PRLDI+VSKG+NHLLKSPFCVHPKTGKIC
Sbjct: 300 PRLDINVSKGLNHLLKSPFCVHPKTGKIC 328


>gi|405951528|gb|EKC19433.1| DNA primase small subunit [Crassostrea gigas]
          Length = 441

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 164/331 (49%), Positives = 221/331 (66%), Gaps = 14/331 (4%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           YD  SL ++LP YYK++FPYG Y RWL YG +    F  REFSFTL  D+Y RY S+   
Sbjct: 7   YDAASLPDLLPIYYKKLFPYGLYYRWLNYGGVPKPYFTNREFSFTLKDDVYIRYQSFADQ 66

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
            E++K++ KRCP KID+GA++   PKDH  ++ + F  + KELVFDIDMTDYDDVR CCS
Sbjct: 67  QEMEKEIQKRCPYKIDIGAVFSHKPKDHKTVKAAAFQAQEKELVFDIDMTDYDDVRTCCS 126

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           GADICEKCW  M IA KILD AL EDF F+  LWV+SGRRG+HCWVCDE A  L   GR+
Sbjct: 127 GADICEKCWPLMQIAVKILDRALEEDFGFEHRLWVYSGRRGVHCWVCDETARKLSQNGRT 186

Query: 181 CLAEYMSVLTA--NPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTK 237
            +AEY+S++    +  KK+ L    LHP + ++  I++ +F +  +++Q+ L  +E Q K
Sbjct: 187 AVAEYLSLVKGGEHQNKKISLDTTRLHPFISQSLEIVKARFYDYAVKKQDFLGDEENQKK 246

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLEL 297
           VL  +       E EK+ ++         W  L   +   +++ + +  KY +EEI+L+ 
Sbjct: 247 VLTELEENFTSKEFEKDTSKTA-------WAVLRNHVDKKKSEANYKGSKYVLEEIMLQY 299

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            YPRLD++VSKGVNHLLKSPFCVHPKTG++C
Sbjct: 300 CYPRLDVNVSKGVNHLLKSPFCVHPKTGRVC 330


>gi|307204968|gb|EFN83507.1| DNA primase small subunit [Harpegnathos saltator]
          Length = 543

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 163/327 (49%), Positives = 221/327 (67%), Gaps = 6/327 (1%)

Query: 6   DPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNEL 65
           D   L ++LP YY R+FP+  Y RWL YGN   F KREFSFTL+ DIY RY S+N    L
Sbjct: 3   DVSDLLDLLPVYYSRLFPFADYYRWLSYGNAGVFSKREFSFTLSDDIYIRYQSFNDQKGL 62

Query: 66  KKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
             ++ +  P KID+GA+Y+  PKD  +   F P  +ELVFDIDMTDYD+VR CC GADIC
Sbjct: 63  SDEIKRLLPHKIDIGAVYNAQPKDQKRGHNFQPVERELVFDIDMTDYDEVRTCCKGADIC 122

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
            KCW++MS+ACKILD+ALR DF ++ +LWVFSGRRGIHCWVCD  A +L G+ R+ +AEY
Sbjct: 123 IKCWKFMSLACKILDSALRSDFGYKHILWVFSGRRGIHCWVCDSLARSLSGQVRAAVAEY 182

Query: 186 MSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLV 242
           + ++       KKV LT D +H  +KRA  II+  F E  ++EQ +L T+E   K L ++
Sbjct: 183 LQIIGGGEFMKKKVHLTSDKIHHSIKRALDIIDPIFIEMCIKEQNILGTEEGIEKFLPIL 242

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKL-KYAIEEILLELAYPR 301
            N + R E++  +++    +   +W+  V  ++  +       L ++ +EE+ L+ +YPR
Sbjct: 243 PNDEDRQEVKVLFSKESTSE--ARWNAFVQYVESKRTGGGKWYLYRHLVEEVKLQYSYPR 300

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           LDI+VSKG+NHLLKSPFCVHPKTGKIC
Sbjct: 301 LDINVSKGLNHLLKSPFCVHPKTGKIC 327


>gi|158295264|ref|XP_316116.4| AGAP006065-PA [Anopheles gambiae str. PEST]
 gi|157015952|gb|EAA11680.4| AGAP006065-PA [Anopheles gambiae str. PEST]
          Length = 429

 Score =  327 bits (837), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 157/332 (47%), Positives = 218/332 (65%), Gaps = 9/332 (2%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           +DP  L ++LP YYKR+FP+  + RW+ YG  ++  F  REFSFTL  DIY RY S+ + 
Sbjct: 15  FDPNILQDLLPLYYKRLFPHKQFYRWMSYGRSESSVFSNREFSFTLQDDIYIRYQSFETQ 74

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGA 122
            EL++++  + P KID+GA+Y+I PKDH   +   P  +ELVFDIDMTDYDD+R CC+ A
Sbjct: 75  QELEREICSKAPFKIDIGAVYNIRPKDHRGSTAIQPVQRELVFDIDMTDYDDIRTCCNEA 134

Query: 123 DICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCL 182
           ++C+ CW++MSIAC++LD ALREDF F+ LLWVFSGRRGIHCWV D+AA  LD   RS +
Sbjct: 135 NVCQLCWKFMSIACRVLDEALREDFGFEHLLWVFSGRRGIHCWVSDKAARHLDTAARSAI 194

Query: 183 AEYMSVLTAN--PVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVL 239
           A Y+++L +         +  D +H  ++RA  I+   FE++ L +Q +    E   K+L
Sbjct: 195 AMYLNLLISGGEGTASRVIIHDEMHHSVRRAYRIVAPLFEEICLVDQNMFGKPEGVRKLL 254

Query: 240 GLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAI---IKHHQAKNSDRKLKYAIEEILLE 296
            LV +  +RAE+EK +  +        W   VA    ++     N  R+ K+ +EE+ L 
Sbjct: 255 ALVQDASVRAELEKRFKAVA-NDSKGVWKEFVAYFDELRMSGNSNRYRRFKFIVEEVTLA 313

Query: 297 LAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
             YPRLDI+V+KG NHLLKSPFCVHPKTGK+C
Sbjct: 314 FTYPRLDINVTKGFNHLLKSPFCVHPKTGKVC 345


>gi|225714530|gb|ACO13111.1| DNA primase small subunit [Lepeophtheirus salmonis]
          Length = 412

 Score =  326 bits (835), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 164/332 (49%), Positives = 223/332 (67%), Gaps = 12/332 (3%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           Y P+ L + LP YYKR+FPY  Y RWL  G++D   F +REFSFTL  DIY RY S+++ 
Sbjct: 6   YSPDLLDDHLPIYYKRLFPYESYCRWL--GSIDKAYFSRREFSFTLRDDIYLRYQSFSTW 63

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGA 122
            EL+ ++ +  P KID+GAI++  P DH + SVF P+ KE+VFDIDMTDYDDVR CCSGA
Sbjct: 64  EELRTEMCRMTPHKIDIGAIFNARPSDHKKISVFAPQEKEIVFDIDMTDYDDVRYCCSGA 123

Query: 123 DICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCL 182
           +IC KCW++M IA K+LD ALR+DF FQ LLWV+SGRRGIHCWV D +A  L    RS +
Sbjct: 124 EICPKCWKFMVIAVKVLDEALRQDFGFQHLLWVYSGRRGIHCWVSDPSAKKLGQSARSAI 183

Query: 183 AEYMSVLTA--NPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVL 239
           AEY+ VL+   +  KKV + G  +HP + RA  I  + FE + L +Q++L   ER   VL
Sbjct: 184 AEYLQVLSGGDSRAKKVLIKGKNVHPSIARALNIASESFESICLVDQDILGEPERWNNVL 243

Query: 240 GLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLK---YAIEEILLE 296
            L+ +  +R +I  +         +E+W  +   ++ H +    +  K   + ++EI+L+
Sbjct: 244 SLIPDETVREKITSKMP--TASTSLERWQIIKKCLEQHISTTEPKSRKTSNHILKEIVLQ 301

Query: 297 LAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
             YPRLDI+V+KG+NHLLKSPFCVHPKTG+IC
Sbjct: 302 YLYPRLDINVTKGLNHLLKSPFCVHPKTGRIC 333


>gi|193662120|ref|XP_001950179.1| PREDICTED: DNA primase small subunit-like [Acyrthosiphon pisum]
          Length = 408

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 159/331 (48%), Positives = 228/331 (68%), Gaps = 13/331 (3%)

Query: 1   MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYIS 58
           M+D   P+ L      YYK++FPY  + +WL YGN+  +NF  REFSFTL+ DIY RY S
Sbjct: 1   MSDDQFPDYLN----VYYKKLFPYSQFHKWLSYGNVKPENFLNREFSFTLHEDIYIRYQS 56

Query: 59  YNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           +N+  E + ++  RCP KID+GA++++ PK    +  F    KELV DIDMTDYD VR C
Sbjct: 57  FNTLQEFETEIQNRCPFKIDIGAVFNMSPKVCRNYPQFHALEKELVIDIDMTDYDQVRTC 116

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CSGA++C+KCWR+M IA KIL+ A+R+DF ++ LLWVFSGRRGIHCW+CDE+A  L    
Sbjct: 117 CSGAEVCQKCWRFMVIAVKILERAIRDDFGWKHLLWVFSGRRGIHCWICDESARKLLPSE 176

Query: 179 RSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKV 238
           R    +Y++VL+A   K+     +V HP +KR+  II+++F  LL EQ+ L T E+  K+
Sbjct: 177 RGSFIDYLAVLSAGDSKRC----NVNHPSVKRSIAIIKEEFNSLLAEQDFLGTTEQCNKI 232

Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAII-KHHQAKNSDRKLKYAIEEILLEL 297
           L  +++  I+ +I  ++++      +++W+ L  I+  +H+    + K K+ +E+ILL L
Sbjct: 233 LSFIADEKIKEQINLQFSKYQSS--IQRWEALTVIVNNNHKRGLLNFKTKHCVEDILLYL 290

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           AYPRLD++V+KG+NHLLKSPFCVHPKTGKIC
Sbjct: 291 AYPRLDVNVTKGLNHLLKSPFCVHPKTGKIC 321


>gi|380021036|ref|XP_003694380.1| PREDICTED: DNA primase small subunit-like [Apis florea]
          Length = 416

 Score =  323 bits (828), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 160/327 (48%), Positives = 221/327 (67%), Gaps = 8/327 (2%)

Query: 8   ESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKK 67
           E+L ++LP YY R+FP+  Y RWL YGN++ F  REFSFTL GD+Y R+ S+ +  EL+ 
Sbjct: 5   ENLGDLLPTYYARLFPFHDYYRWLSYGNVNTFNNREFSFTLQGDVYIRFQSFKNVKELEL 64

Query: 68  DLIKRCPQKIDLGAIYDICPKDH-LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
            + +  P KID+GAIY+  PK+  ++ + F P  KELVFDIDMTDYD++R CCSGADIC 
Sbjct: 65  QIRRLLPVKIDIGAIYNYSPKEQKMRGTNFHPVEKELVFDIDMTDYDEIRTCCSGADICA 124

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
            CW++M++ACKILD ALR DF ++ +LWVFSGRRGIHCWVCD  A  L  R R  +AEY+
Sbjct: 125 NCWKFMALACKILDNALRLDFGYKHILWVFSGRRGIHCWVCDPCARTLTVRERGAVAEYL 184

Query: 187 SVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLVS 243
            ++       KKV L GD +H  +KRA   IE  F    +EEQ +L T +   K L + +
Sbjct: 185 QIIDGGEYMKKKVNLPGDKIHHSIKRALETIETVFVPFCIEEQNILGTDDGVEKFLQIFN 244

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDR--KLKYAIEEILLELAYPR 301
           + +I+ E++  + +    +D  +W+  V  I+  +     +  + ++ IEEI+L+ AYPR
Sbjct: 245 DDEIKQELKSLFGQCNSSKD--RWNIFVKHIRSKKTTGDKKWYQYRHLIEEIMLQYAYPR 302

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           LDI VSKG+NHLLKSPFC+HPKTGK+C
Sbjct: 303 LDIAVSKGMNHLLKSPFCIHPKTGKVC 329


>gi|449681290|ref|XP_002167763.2| PREDICTED: DNA primase small subunit-like, partial [Hydra
           magnipapillata]
          Length = 474

 Score =  320 bits (820), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 166/331 (50%), Positives = 217/331 (65%), Gaps = 13/331 (3%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSP 62
           Y+   LT++L  YYKR+FPY  Y +WL YG  +   F  REFSFTL  DIY RY+S+   
Sbjct: 11  YNESDLTDLLKQYYKRLFPYKLYYKWLQYGEDSKSYFENREFSFTLKDDIYIRYLSFADA 70

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           NEL+K++ K+ P KID+GAIY+  PKD+  LQ  VF  + KELVFDIDMTDYD VR CCS
Sbjct: 71  NELEKEMQKKVPYKIDIGAIYNYKPKDNKQLQAGVFKAEEKELVFDIDMTDYDTVRTCCS 130

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           GA +C KCW  M++A KILD AL EDF F+  LWV+SGRRGIHCWV D  A  L  +GRS
Sbjct: 131 GASVCNKCWPLMTVALKILDRALEEDFGFEHRLWVYSGRRGIHCWVADLRARKLSQQGRS 190

Query: 181 CLAEYMSVLTAN--PVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTK 237
            +AEY+SV+       KKV   G+ LHP +  A  +I+  F E  L +Q++L + E+Q  
Sbjct: 191 AVAEYLSVIKGGDAQAKKVHFKGNSLHPSIACAASLIKKYFTENYLVDQDILDSVEQQKI 250

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLEL 297
           +L L+ +   R ++E  W        VEKW +L  ++      N     K+ +EEI+ + 
Sbjct: 251 MLKLIPDESTRDKVEAVWNH-EILSTVEKWKKLENLVLDKSFNN-----KHTLEEIMFQY 304

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            YPRLDI+V+KG+NHLLKSPFCVHPKTG++C
Sbjct: 305 VYPRLDINVTKGLNHLLKSPFCVHPKTGRVC 335


>gi|195125531|ref|XP_002007231.1| GI12823 [Drosophila mojavensis]
 gi|193918840|gb|EDW17707.1| GI12823 [Drosophila mojavensis]
          Length = 434

 Score =  320 bits (819), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 163/337 (48%), Positives = 225/337 (66%), Gaps = 11/337 (3%)

Query: 2   ADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISY 59
           A  YDP  L +MLP YY+R+FP+ P+ RWL YG+ ++  F  RE SFTL  DIY RY+ +
Sbjct: 20  APAYDPNILPDMLPVYYRRLFPHEPFYRWLNYGHSEDNIFVNREISFTLQDDIYIRYLCF 79

Query: 60  NSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQ-HSVFTPKMKELVFDIDMTDYDDVRNC 118
            +  EL+K++  R P KID+G + +I PK+        TP  +ELVFDID TDYDD+RNC
Sbjct: 80  ETQAELEKEICTRNPYKIDIGPVMNIRPKNFRSVAGGLTPVQRELVFDIDATDYDDIRNC 139

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CSGA++C KCW++M +A K+LD ALREDF F+ +LW+FSGRRGIHCWVCD  A  LD R 
Sbjct: 140 CSGAEMCLKCWKFMMLAAKVLDVALREDFGFEHMLWIFSGRRGIHCWVCDHTARHLDARA 199

Query: 179 RSCLAEYMSVLT-ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQT 236
           R+ +AEY+++LT  N V +V + GD  H  L+RA  I+E  FE+ +LE+Q L  + +  +
Sbjct: 200 RAAVAEYLNILTYTNNVARVQI-GDRTHHSLRRALKIVEPMFEEIILEDQNLFGSPKGVS 258

Query: 237 KVLGLVSNGDIRAEIEKEWTRI---GPGQDV--EKWDRLVAIIKHHQAKNSDRKLKYAIE 291
           K+L +VS+   R+ +E    +    G    +  E + R    ++   A    RKLK+ +E
Sbjct: 259 KLLQMVSDEAARSNLEAYLQKSHEDGAHSKLIWESFVRYANSMRTSAANVWSRKLKHIVE 318

Query: 292 EILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           E+ L L YPRLDI+V+KG NHLLK+PFC+HP TGK+C
Sbjct: 319 EVQLCLLYPRLDINVTKGFNHLLKAPFCIHPATGKVC 355


>gi|432866543|ref|XP_004070855.1| PREDICTED: DNA primase small subunit-like [Oryzias latipes]
          Length = 426

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 171/333 (51%), Positives = 227/333 (68%), Gaps = 19/333 (5%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           YDP  L ++LP YY+R+FP+  Y RWL YG +    F+ REFSFTL  DIY RY S+++ 
Sbjct: 8   YDPACLPDLLPLYYRRLFPFSQYYRWLNYGGVQKNYFQNREFSFTLKDDIYVRYQSFSTQ 67

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           NEL+K++ K  P KID+GA+Y   P  H  ++   F    KELVFDIDMTDYDDVR CCS
Sbjct: 68  NELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKSGSFQALEKELVFDIDMTDYDDVRTCCS 127

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            ADIC KCW  M+IA  ILD ALR+DF FQ LLWV+SGRRG+HCWVCDEAA  L   GRS
Sbjct: 128 AADICSKCWTLMTIAIHILDRALRDDFGFQHLLWVYSGRRGVHCWVCDEAARKLSAAGRS 187

Query: 181 CLAEYMSVLTAN--PVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTK 237
            +AEY+S++      VKKV LT D +HP +  +  ++E  F E  +++Q++L  KE   K
Sbjct: 188 AVAEYLSLVKGGEETVKKVVLT-DPIHPFISASLEVVEKYFLEYAVQDQDILGRKECVDK 246

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD---RKLKYAIEEIL 294
           VL LV   D+R E++ +       + V++ ++L  +IK ++AKN     +K ++  +EI+
Sbjct: 247 VLALVPE-DVRNELQTKM------KGVKQPEKLWKMIK-NEAKNKQGTVKKGQHFEKEIM 298

Query: 295 LELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           L+  YPRLD++VSKGVNHLLKSPF VHPKTG+I
Sbjct: 299 LQYCYPRLDVNVSKGVNHLLKSPFSVHPKTGRI 331


>gi|41393065|ref|NP_958856.1| DNA primase small subunit [Danio rerio]
 gi|28839820|gb|AAH47856.1| Primase polypeptide 1 [Danio rerio]
          Length = 425

 Score =  317 bits (812), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 163/331 (49%), Positives = 224/331 (67%), Gaps = 12/331 (3%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           YD   L ++LP YY+R+FP+  Y RWL YG +    F+ REFSFTL  DIY RY S++S 
Sbjct: 6   YDSACLPDLLPLYYRRLFPFSQYFRWLSYGGVSKNYFQNREFSFTLKDDIYVRYQSFSSQ 65

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           NEL+K++ K  P KID+GA+Y   P  H  ++   F    KELVFDIDMTDYDDVR CCS
Sbjct: 66  NELEKEMQKMVPYKIDIGAVYSHRPSQHNTVKSGTFQALEKELVFDIDMTDYDDVRRCCS 125

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            ADIC KCW  M+IA +ILD ALREDF F  LLWV+SGRRG+HCWVCD+AA  L    RS
Sbjct: 126 AADICSKCWTLMTIAIRILDRALREDFGFHHLLWVYSGRRGVHCWVCDDAARKLSVAARS 185

Query: 181 CLAEYMSVLTAN--PVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTK 237
            +AEY+S++      ++KV L+ D +HP + R+  ++E  F +  + +Q++L  KE   K
Sbjct: 186 AVAEYLSLVKGGEETLRKVVLS-DPIHPFISRSLSVVEHYFPQYAIVDQDILGNKESVDK 244

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLEL 297
           VL L+   DI+ ++ + +      + +++WDRL  ++ H ++ +S +  +Y  +EI+L+ 
Sbjct: 245 VLALLPE-DIKKDLIEYYQ--NHKEPMKRWDRLRQLVDHKKS-SSKKGGQYYDKEIMLQY 300

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            YPRLD++VSKGVNHLLKSPF VHPKTG+I 
Sbjct: 301 CYPRLDVNVSKGVNHLLKSPFSVHPKTGRIS 331


>gi|320169358|gb|EFW46257.1| primase polypeptide 1 [Capsaspora owczarzaki ATCC 30864]
          Length = 490

 Score =  317 bits (811), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 157/327 (48%), Positives = 219/327 (66%), Gaps = 12/327 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           +++  YY R+FP+  Y RWL YGN+    F  REFSFTL GDIY RY S+++  +L+K++
Sbjct: 79  QLMRIYYSRLFPFKKYYRWLSYGNVQKHYFCNREFSFTLEGDIYVRYQSFSTEEQLRKEI 138

Query: 70  IKRCPQKIDLGAIYDICPKDHLQ--HSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEK 127
           I+R P KID+GA+Y++ PKDH Q     F  + KE+VFDIDMTDYDD+R CC GADIC +
Sbjct: 139 IQRNPIKIDIGAVYNVEPKDHKQVRGPEFKAEEKEVVFDIDMTDYDDIRTCCKGADICFR 198

Query: 128 CWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMS 187
           CW +M+IA +ILD ALR+DF F+ LLW++SGRRG+HCWVCD +    D   R+ L +Y+S
Sbjct: 199 CWPFMTIAVRILDRALRDDFGFKSLLWIYSGRRGVHCWVCDNSVRTYDSNIRTVLTDYLS 258

Query: 188 VLTANP--VKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLV-- 242
           V+  +    KKV LT + LHP L+++  IIE+ +E  +L +Q++L +     +VL  +  
Sbjct: 259 VVKGSEKNAKKVALT-NPLHPSLQKSLDIIEEYWEPVILGDQDILRSPAHIDRVLATIPD 317

Query: 243 -SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPR 301
             N  +R  +  EW     G   E+W +LV  + +   K     LK  + EI+ + AYPR
Sbjct: 318 EDNARMRQALRNEWNTHPNGTSQERWKQLVQEV-YLSVKAGKSYLKSTVPEIMFQFAYPR 376

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           LD+ V+KGVNHLLKSPFCVHPKTG++C
Sbjct: 377 LDVEVTKGVNHLLKSPFCVHPKTGRVC 403


>gi|157422866|gb|AAI53662.1| Primase polypeptide 1 [Danio rerio]
          Length = 425

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 162/331 (48%), Positives = 224/331 (67%), Gaps = 12/331 (3%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           YD   L ++LP YY+R+FP+  Y RWL YG +    F+ REFSFTL  DIY RY S++S 
Sbjct: 6   YDSACLPDLLPLYYRRLFPFSQYFRWLSYGGVSKNYFQNREFSFTLKDDIYVRYQSFSSQ 65

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           NEL+K++ K  P KID+GA+Y   P  H  ++   F    KELVFDIDMTDYDDVR CCS
Sbjct: 66  NELEKEMQKMVPYKIDIGAVYSHRPSQHNTVKSGTFQALEKELVFDIDMTDYDDVRRCCS 125

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            ADIC KCW  M+IA +ILD ALREDF F  LLWV+SGRRG+HCWVCD+AA  L    RS
Sbjct: 126 AADICSKCWTLMTIAIRILDRALREDFGFHHLLWVYSGRRGVHCWVCDDAARKLSVAARS 185

Query: 181 CLAEYMSVLTAN--PVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTK 237
            +AEY+S++      ++KV L+ D +HP + ++  ++E  F +  + +Q++L  KE   K
Sbjct: 186 AVAEYLSLVKGGEETLRKVVLS-DPIHPFISQSLSVVEHYFPQYAIVDQDILGNKESVDK 244

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLEL 297
           VL L+   DI+ ++ + +      + +++WDRL  ++ H ++ +S +  +Y  +EI+L+ 
Sbjct: 245 VLALLPE-DIKKDLIEYYQ--NHKEPMKRWDRLRQLVDHKKS-SSKKGGQYYDKEIMLQY 300

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            YPRLD++VSKGVNHLLKSPF VHPKTG+I 
Sbjct: 301 CYPRLDVNVSKGVNHLLKSPFSVHPKTGRIS 331


>gi|410900069|ref|XP_003963519.1| PREDICTED: DNA primase small subunit-like, partial [Takifugu
           rubripes]
          Length = 453

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 166/334 (49%), Positives = 223/334 (66%), Gaps = 13/334 (3%)

Query: 2   ADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISY 59
           ++ +D  +L ++LP YY+R+FP+  Y RWL YG L    F+ REFSFTL  DIY RY S+
Sbjct: 3   SNVFDSANLPDLLPLYYRRLFPFSLYYRWLTYGGLQKNYFQNREFSFTLKDDIYVRYQSF 62

Query: 60  NSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRN 117
           ++  EL+K++ K  P K+D+GA+Y   P  H  ++   F    KELVFDIDMTDYDDVR+
Sbjct: 63  STQTELEKEMQKINPYKVDIGAVYSHRPIQHNTVKSGTFQALEKELVFDIDMTDYDDVRS 122

Query: 118 CCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGR 177
           CCS ADIC KCW  M+IA +ILD ALREDF FQ LLWV+SGRRG+HCWVCDEAA  L   
Sbjct: 123 CCSAADICSKCWTLMTIAIRILDRALREDFGFQHLLWVYSGRRGVHCWVCDEAARKLSVA 182

Query: 178 GRSCLAEYMSVLTAN--PVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKER 234
            RS +AEY+S++      VKKV LT D +HP ++ +  ++E  F +  + +Q++L  KE 
Sbjct: 183 ARSAVAEYLSLVKGGDETVKKVVLT-DPIHPFIRESLAVVEKYFTQYAIHDQDILGQKES 241

Query: 235 QTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEIL 294
             KVL LV   D+R E+++++      ++     R  AI K   AK    K ++  +EI+
Sbjct: 242 VEKVLALVPE-DVRKELQQDFQNERKPENRWTQIRNQAIKKQGAAK----KGQHFEKEIM 296

Query: 295 LELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           L+  YPRLD++VSKGVNHLLKSPF VHPKTG+I 
Sbjct: 297 LQYCYPRLDVNVSKGVNHLLKSPFSVHPKTGRIS 330


>gi|194865922|ref|XP_001971670.1| GG14305 [Drosophila erecta]
 gi|190653453|gb|EDV50696.1| GG14305 [Drosophila erecta]
          Length = 436

 Score =  314 bits (804), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 157/337 (46%), Positives = 220/337 (65%), Gaps = 13/337 (3%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           Y+PE L +MLP YY+R+FP+ P+ RWL YG+ ++  F  RE SFTL  DIY RY+ +++ 
Sbjct: 21  YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLPDDIYIRYLCFDTQ 80

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDHLQ-HSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
            EL+K++  R P KID+G +    PK+H       TP  +ELVFDIDMTDYDDVR CCSG
Sbjct: 81  AELEKEICSRNPIKIDIGPVMHTKPKNHRSIPGGLTPVQRELVFDIDMTDYDDVRTCCSG 140

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
           A++C KCW++M +A ++LD ALREDF F+ ++W+FSGRRGIHCWVCD  A  LD RGR  
Sbjct: 141 AEVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDHQARHLDARGRYA 200

Query: 182 LAEYMSVLT----ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQT 236
           +AEY++++T    +         G+  H  LKRA  I+E  FE+ +LE+Q L  T +  T
Sbjct: 201 VAEYLNIITYANFSGTNSPRCAMGERPHHSLKRALKIVEPMFEEVILEDQNLFGTPKGVT 260

Query: 237 KVLGLVSNGDIRAEIEKEWTR-IGPGQDV----EKWDRLVAIIKHHQAKNSDRKLKYAIE 291
           K+L +V +   R E+E    + +  G       E +++  + ++   A    RKLK  + 
Sbjct: 261 KLLNMVHDDAARGELESYLQKNLEDGAHSRLIWESFNKYASSMRTSTANAWSRKLKNIVS 320

Query: 292 EILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           E+ L L YPRLDI+V++G NHLLK+PFC+HP TGK+C
Sbjct: 321 EVQLGLLYPRLDINVTRGFNHLLKAPFCIHPATGKVC 357


>gi|443688224|gb|ELT90971.1| hypothetical protein CAPTEDRAFT_172979 [Capitella teleta]
          Length = 418

 Score =  313 bits (803), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 164/339 (48%), Positives = 218/339 (64%), Gaps = 12/339 (3%)

Query: 1   MADK---YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYAR 55
           M DK   YDP SL + LP YYKR FPYG Y +WL YG +  + F  REFSFTL  D+Y R
Sbjct: 1   MCDKKSSYDPASLPDFLPMYYKRFFPYGAYFKWLNYGGVPKNYFSHREFSFTLKDDVYLR 60

Query: 56  YISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYD 113
           Y S++   EL+K++ KRCP KID+GA++   P+D   ++ + F    KELVFDIDMTDYD
Sbjct: 61  YQSFSDKQELEKEIQKRCPYKIDIGAVFSHRPRDQKAVKAADFRAMEKELVFDIDMTDYD 120

Query: 114 DVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALA 173
           DVR CCSGADIC KCW  M+IA K++  +L +DF F+ +LWV+SGRRG+HCWVCDE A  
Sbjct: 121 DVRFCCSGADICSKCWPLMTIAIKVIHRSLCDDFGFEHILWVYSGRRGVHCWVCDEVARK 180

Query: 174 LDGRGRSCLAEYMSVLTA--NPVKKVFLTGDVLHPHLKRAKLIIEDQFEK--LLEEQELL 229
           +    RS +AEY+SV+    N  KKV L    +HP +  A  II  +  K   +E+Q+  
Sbjct: 181 MSQTARSAVAEYLSVVKGGENQAKKVNLYTGNIHPSITAALDIIGGKSFKSYAIEKQDFA 240

Query: 230 STKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYA 289
            T E+  K+L  V + + R  I   + +  P      W+     IK  +A  + +KL   
Sbjct: 241 GTDEQIQKILSFVPDENFRDGIMNVYEKNHPKTSYTFWNVFKEYIK-EKADFTHKKLSNL 299

Query: 290 IEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            +E++L+  YPRLD++VSKGVNHLLKSPFCVHPKTG++C
Sbjct: 300 PDELMLQYCYPRLDVNVSKGVNHLLKSPFCVHPKTGRVC 338


>gi|195016209|ref|XP_001984363.1| GH15058 [Drosophila grimshawi]
 gi|193897845|gb|EDV96711.1| GH15058 [Drosophila grimshawi]
          Length = 434

 Score =  313 bits (803), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 157/333 (47%), Positives = 216/333 (64%), Gaps = 9/333 (2%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           YD   L +MLP YY+R+FP+ P+ RWL YG+ ++  F  RE SFTL+ DIY RY+ + + 
Sbjct: 23  YDSNILPDMLPVYYRRLFPHEPFYRWLNYGHSEDNIFVNREISFTLHDDIYIRYLCFETQ 82

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKD-HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
            EL+K++    P KID+GA+    PK+        TP  +ELVFDID TDYDD+RNCCSG
Sbjct: 83  AELEKEICSSNPYKIDIGAVLSTRPKNFRTVAGGLTPVQRELVFDIDATDYDDIRNCCSG 142

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
           A++C KCW++M +A ++LD ALREDFDF+ +LW+FSGRRGIHCWVCD  A  LD R R+ 
Sbjct: 143 AEMCLKCWKFMVLAARVLDAALREDFDFEHMLWIFSGRRGIHCWVCDHTARHLDARARAA 202

Query: 182 LAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLG 240
           + EY+++L+          GD  H  L+RA  I+E  FE++ LE+Q L  T +   K+L 
Sbjct: 203 VTEYLNILSYTNNAARVQIGDRTHHSLRRALKIVEPMFEEIVLEDQNLFGTPKGINKLLQ 262

Query: 241 LVSNGDIRAEIEKEWTRI---GPGQDV--EKWDRLVAIIKHHQAKNSDRKLKYAIEEILL 295
           +VS+   R E+E    +    G    +  E + R    ++   A    RKLK+ ++E+ L
Sbjct: 263 MVSDEGARNELEAYLQKTHEDGAHSKLIWESFVRFANSMRTSAANVWSRKLKHIVQEVQL 322

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            L YPRLDI+V+KG NHLLK+PFC+HP TGKIC
Sbjct: 323 CLLYPRLDINVTKGFNHLLKAPFCIHPATGKIC 355


>gi|195325981|ref|XP_002029709.1| GM25047 [Drosophila sechellia]
 gi|194118652|gb|EDW40695.1| GM25047 [Drosophila sechellia]
          Length = 438

 Score =  313 bits (801), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 159/337 (47%), Positives = 218/337 (64%), Gaps = 13/337 (3%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           Y+PE L +MLP YY+R+FP+ P+ RWL YG+ ++  F  RE SFTL  DIY RY+ +++ 
Sbjct: 23  YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQ 82

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDHLQ-HSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
            EL+K++  R P KID+G +    PK+H       TP  +ELVFDIDMTDYD+VR CCSG
Sbjct: 83  AELEKEICSRNPIKIDIGPVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSG 142

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
           A +C KCW++M +A ++LD ALREDF F+ ++W+FSGRRGIHCWVCD  A  LDGRGR  
Sbjct: 143 AGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDHQARHLDGRGRYA 202

Query: 182 LAEYMSVLT----ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           +AEY++++T    A         GD  H  LKRA  I+E  FE++ LE+Q L  T +  T
Sbjct: 203 VAEYLNIITYASFAGGNSPRCSMGDRPHHSLKRALKIVEPMFEEIVLEDQNLFGTPKGVT 262

Query: 237 KVLGLVSNGDIRAEIEKEWTR-IGPGQDVE-KWDRLVAIIKHHQAKNS---DRKLKYAIE 291
           K+L +V +   R E+E    + +  G +    W+  +      +   +    RKLK  + 
Sbjct: 263 KLLNMVHDDAARGELESYLQKNLEDGANSRLVWESFIKYANSMRTSTTSAWSRKLKNIVA 322

Query: 292 EILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           EI L L YPRLDI+V++G NHLLK+PFC+HP TGK+C
Sbjct: 323 EIQLGLLYPRLDINVTRGFNHLLKAPFCIHPATGKVC 359


>gi|195375608|ref|XP_002046592.1| GJ12966 [Drosophila virilis]
 gi|194153750|gb|EDW68934.1| GJ12966 [Drosophila virilis]
          Length = 434

 Score =  313 bits (801), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 157/336 (46%), Positives = 216/336 (64%), Gaps = 9/336 (2%)

Query: 2   ADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISY 59
           A  YD   L +MLP YY+R+FP+ P+ RWL YG+ ++  F  RE SFTL  DIY RY+ +
Sbjct: 20  APVYDASILPDMLPVYYRRLFPHEPFYRWLNYGHSEDNIFVNREISFTLQDDIYIRYLCF 79

Query: 60  NSPNELKKDLIKRCPQKIDLGAIYDICPKD-HLQHSVFTPKMKELVFDIDMTDYDDVRNC 118
            +  EL+K++  R P KID+G + +  PK+        TP  +ELVFDID TDYDD+RNC
Sbjct: 80  ETQAELEKEICSRNPYKIDIGPVMNTRPKNFRTVAGGLTPVQRELVFDIDATDYDDIRNC 139

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CSGA+IC KCW++M +A ++LD ALREDF F+ +LW+FSGRRGIHCWVCD  A  LD R 
Sbjct: 140 CSGAEICLKCWKFMMLAARVLDAALREDFGFEHMLWIFSGRRGIHCWVCDHTARHLDARA 199

Query: 179 RSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTK 237
           R+ +AEY+++LT          GD  H  L+RA  I+E  FE++ LE+Q L  T +   +
Sbjct: 200 RAAVAEYLNILTYTNNTARVQMGDRTHHSLRRALKILEPMFEEIVLEDQNLFGTPKGVNR 259

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEK--WDRLVAIIKHHQAKNSD---RKLKYAIEE 292
           +L +VS+   R ++E    +        K  WD  V      +   ++   RKLK+ ++E
Sbjct: 260 LLQMVSDEAARNDLESYLQKQHEDGAHSKLVWDSFVRYANSMRTSAANVWSRKLKHIVQE 319

Query: 293 ILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           + L L YPRLDI+V+KG NHLLK+PFC+HP TGK+C
Sbjct: 320 VQLCLLYPRLDINVTKGFNHLLKAPFCIHPATGKVC 355


>gi|195588717|ref|XP_002084104.1| GD14084 [Drosophila simulans]
 gi|194196113|gb|EDX09689.1| GD14084 [Drosophila simulans]
          Length = 438

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 162/340 (47%), Positives = 221/340 (65%), Gaps = 19/340 (5%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           Y+PE L +MLP YY+R+FP+ P+ RWL YG+ ++  F  RE SFTL  DIY RY+ +++ 
Sbjct: 23  YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQ 82

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDHLQ-HSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
            EL+K++  R P KID+G +    PK+H       TP  +ELVFDIDMTDYD+VR CCSG
Sbjct: 83  AELEKEICSRNPIKIDIGPVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSG 142

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
           A +C KCW++M +A ++LD ALREDF F+ ++W+FSGRRGIHCWVCD  A  LDGRGR  
Sbjct: 143 AGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDHQARHLDGRGRYA 202

Query: 182 LAEYMSVLT----ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           +AEY++++T    A         GD  H  LKRA  I+E  FE++ LE+Q L  T +  T
Sbjct: 203 VAEYLNIITYASFAGGNSPRCSMGDRPHHSLKRALKIVEPMFEEIVLEDQNLFGTPKGVT 262

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLV--AIIKHHQAKNS------DRKLKY 288
           K+L +V +   R E+E   + +    +     RLV  + IK+  +  +       RKLK 
Sbjct: 263 KLLNMVHDDAARGELE---SYLQKNLEDGAHSRLVWESFIKYANSMRTSTTSAWSRKLKN 319

Query: 289 AIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            + EI L L YPRLDI+V++G NHLLK+PFC+HP TGK+C
Sbjct: 320 IVAEIQLGLLYPRLDINVTRGFNHLLKAPFCIHPATGKVC 359


>gi|24660826|ref|NP_523972.2| DNA polymerase alpha 50kD [Drosophila melanogaster]
 gi|45645190|sp|Q24317.2|PRI1_DROME RecName: Full=DNA primase small subunit; AltName: Full=DNA
           polymerase subunit A; AltName: Full=DNA primase 50 kDa
           subunit; Short=dPRI50
 gi|7295113|gb|AAF50439.1| DNA polymerase alpha 50kD [Drosophila melanogaster]
 gi|17945575|gb|AAL48839.1| RE26079p [Drosophila melanogaster]
          Length = 438

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 162/340 (47%), Positives = 221/340 (65%), Gaps = 19/340 (5%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           Y+PE L +MLP YY+R+FP+ P+ RWL YG+ ++  F  RE SFTL  DIY RY+ +++ 
Sbjct: 23  YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQ 82

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDHLQ-HSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
            EL+K++  R P KID+G +    PK+H       TP  +ELVFDIDMTDYD+VR CCSG
Sbjct: 83  AELEKEICSRNPIKIDIGPVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSG 142

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
           A +C KCW++M +A ++LD ALREDF F+ ++W+FSGRRGIHCWVCD  A  LDGRGR  
Sbjct: 143 AGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYA 202

Query: 182 LAEYMSVLT----ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           +AEY++++T    A         GD  H  LKRA  I+E  FE++ LE+Q L  T +  T
Sbjct: 203 VAEYLNIITYASFAGGNSPRCSMGDRPHHSLKRALKIVEPMFEEIVLEDQNLFGTPKGVT 262

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLV--AIIKHHQAKNS------DRKLKY 288
           K+L +V +   R E+E   + +    +     RLV  + IK+  +  +       RKLK 
Sbjct: 263 KLLNMVHDDAARGELE---SYMQKNLEDGAHSRLVWESFIKYANSMRTSTTSAWSRKLKN 319

Query: 289 AIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            + EI L L YPRLDI+V++G NHLLK+PFC+HP TGK+C
Sbjct: 320 IVAEIQLGLLYPRLDINVTRGFNHLLKAPFCIHPATGKVC 359


>gi|195491230|ref|XP_002093473.1| GE20733 [Drosophila yakuba]
 gi|194179574|gb|EDW93185.1| GE20733 [Drosophila yakuba]
          Length = 438

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 157/337 (46%), Positives = 219/337 (64%), Gaps = 13/337 (3%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           Y+PE L +MLP YY+R+FP+ P+ RWL YG  ++  F  RE SFTL  DIY RY+ +++ 
Sbjct: 23  YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGLSEDAIFCNREISFTLQDDIYIRYLCFDTQ 82

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDHLQ-HSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
            EL+K++  R P KID+G +    PK+H       TP  +ELVFDIDMTDYDDVR CCSG
Sbjct: 83  AELEKEICSRNPIKIDIGPVMHTKPKNHRSIPGGLTPVQRELVFDIDMTDYDDVRTCCSG 142

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
           A++C KCW++M +A +++D ALREDF F+ ++W+FSGRRGIHCWVCD  A  LDGRGR  
Sbjct: 143 AEVCLKCWKFMVLAARVIDVALREDFGFEHIIWIFSGRRGIHCWVCDHQARHLDGRGRYA 202

Query: 182 LAEYMSVLT----ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           +AEY++++T    +         G+  H  +KRA  I+E  FE++ LE+Q L  T +  T
Sbjct: 203 VAEYLNIITYANFSGSNSPRCAMGERPHHSIKRALKIVEPMFEEIVLEDQNLFGTPKGVT 262

Query: 237 KVLGLVSNGDIRAEIEKEWTR-IGPGQDV----EKWDRLVAIIKHHQAKNSDRKLKYAIE 291
           K+L +V +   R E+E    + +  G       E + +  + ++   A    RKLK  + 
Sbjct: 263 KLLNMVHDDSARGELESYLQKNLEDGAHSRLVWESFIKYASSMRTSAANAWSRKLKNIVS 322

Query: 292 EILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           EI L L YPRLDI+V++G NHLLK+PFC+HP TGK+C
Sbjct: 323 EIQLGLLYPRLDINVTRGFNHLLKAPFCIHPATGKVC 359


>gi|89267400|emb|CAJ82378.1| primase, polypeptide 1, 49kDa [Xenopus (Silurana) tropicalis]
          Length = 420

 Score =  310 bits (794), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 165/331 (49%), Positives = 224/331 (67%), Gaps = 15/331 (4%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSP 62
           YDP SL ++LP YY+R+FP+  Y RWL YG +  + F  REFSFTL  D+Y RY S+N+ 
Sbjct: 6   YDPASLPDLLPLYYRRLFPFYQYFRWLNYGGVVKNYFHHREFSFTLKDDVYVRYQSFNNQ 65

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           +EL+K++ K CP KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR CCS
Sbjct: 66  SELEKEMQKMCPYKIDIGAVYSHKPSLHNTVKSGTFQAQEKELVFDIDMTDYDDVRRCCS 125

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            ADIC KCW  M+IA +ILD AL EDF FQ  LWV+SGRRG+HCWVCD++A  L    RS
Sbjct: 126 SADICPKCWTLMTIAVRILDRALAEDFGFQHRLWVYSGRRGVHCWVCDDSARKLSQAERS 185

Query: 181 CLAEYMSVLTAN--PVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTK 237
            +AEY+SV+      +KKV L+ D +HP + ++  ++E  FEK  L +Q++L  K+   K
Sbjct: 186 AVAEYLSVVKGGEETIKKVQLS-DPIHPFIGKSLKMVERYFEKYALVDQDILENKQCWDK 244

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLE 296
           V+ LV     R  + +E+++      VE+WD+L + +   +A   D R+     +EI+L+
Sbjct: 245 VVALVPEV-ARENLLREFSKARSS--VERWDKLSSCL---EATVKDLRRHSNIPKEIMLQ 298

Query: 297 LAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
             YPRLD++VSKG+NHLLKSPF VHPKTG+I
Sbjct: 299 FCYPRLDVNVSKGLNHLLKSPFSVHPKTGRI 329


>gi|348502933|ref|XP_003439021.1| PREDICTED: DNA primase small subunit-like [Oreochromis niloticus]
          Length = 426

 Score =  309 bits (792), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 163/331 (49%), Positives = 219/331 (66%), Gaps = 13/331 (3%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           YDP SL ++LP YY+R+FP+  Y RWL YG +    F+ REFSFTL  DIY RY S+++ 
Sbjct: 6   YDPASLPDLLPLYYRRLFPFSQYYRWLSYGGVQKNYFQNREFSFTLKDDIYVRYQSFSTQ 65

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           NEL+K++ K  P KID+GA+Y   P  H  ++   F    KELVFDIDMTDYDDVR+CCS
Sbjct: 66  NELEKEMQKMNPYKIDVGAVYSHRPSQHNTVKSGTFQALEKELVFDIDMTDYDDVRSCCS 125

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            ADIC KCW  M+IA  ILD ALR+DF FQ  LWV+SGRRG+HCWVCDEAA  L    RS
Sbjct: 126 AADICSKCWTLMTIAIHILDRALRDDFGFQHRLWVYSGRRGVHCWVCDEAARKLSVAARS 185

Query: 181 CLAEYMSVLTAN--PVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTK 237
            + EY+S++      VKKV LT + +HP +  +  ++++ F +  L +Q+L+ +KE   K
Sbjct: 186 AVTEYLSLVKGGDETVKKVVLT-EPIHPFISNSLDVVKEYFTQYALHDQDLMGSKESVEK 244

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLEL 297
           VL LV   D R+ +++        +  ++W  +    K  Q+  + +K +Y  +EI+L+ 
Sbjct: 245 VLALVPE-DARSYLQQ--EFEKEKKPEKRWKLITTEAKRKQS--TAKKGQYFEKEIMLQY 299

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            YPRLD +VSKGVNHLLKSPF VHPKTG+I 
Sbjct: 300 CYPRLDANVSKGVNHLLKSPFSVHPKTGRIS 330


>gi|194749491|ref|XP_001957172.1| GF10290 [Drosophila ananassae]
 gi|190624454|gb|EDV39978.1| GF10290 [Drosophila ananassae]
          Length = 438

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 161/338 (47%), Positives = 218/338 (64%), Gaps = 15/338 (4%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           ++PE L +MLP YY+R+FP+ P+ RWL YG  ++  F  RE SFTL  DIY RY+ ++S 
Sbjct: 23  FNPEILQDMLPLYYRRLFPHQPFYRWLSYGLTEDGIFCNREISFTLMDDIYIRYLCFDSQ 82

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDHLQ-HSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
            EL+K+L  R P KID+G +    PK H        P  +ELVFDIDMTDYDDVR CCSG
Sbjct: 83  AELEKELCSRNPVKIDIGPVMHTRPKMHRTIPGGLVPVQRELVFDIDMTDYDDVRTCCSG 142

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
           A++C KCW++M +A +ILD ALREDF F+ +LWVFSGRRGIHCWVCD  A  LDGRGR  
Sbjct: 143 AEVCLKCWKFMVLAARILDVALREDFGFEHILWVFSGRRGIHCWVCDHQARHLDGRGRYS 202

Query: 182 LAEYMSVLT-----ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQ 235
           +AEY+++++      +   +V L GD  H  +KRA  I+E  FE+ ++E+Q L  T +  
Sbjct: 203 VAEYLNIVSYVSFGGSNSPRVPL-GDRQHHSIKRALKIVEPMFEEVIIEDQNLFGTPKGV 261

Query: 236 TKVLGLVSNGDIRAEIEKEWTR-----IGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAI 290
           TK+L ++ +   R E E    +         Q  E + +    ++   A    RKLK  +
Sbjct: 262 TKLLNMIHDEGARGEFESYLQKNLEDGAHSRQVWESFLKYSNSMRTTTANAWSRKLKNIV 321

Query: 291 EEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +E+ L L YPRLDI+V++G NHLLKSPFC+HP TGK+C
Sbjct: 322 QEVQLGLLYPRLDINVTRGFNHLLKSPFCIHPSTGKVC 359


>gi|148237548|ref|NP_001080819.1| primase, DNA, polypeptide 1 (49kDa) [Xenopus laevis]
 gi|29612475|gb|AAH49395.1| Dnapol-alpha50-prov protein [Xenopus laevis]
          Length = 420

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 163/331 (49%), Positives = 224/331 (67%), Gaps = 15/331 (4%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSP 62
           YDP SL ++LP YY+R+FP+  Y RWL YG +  + F+ REFSFTL  D+Y RY S+N+ 
Sbjct: 6   YDPASLPDVLPLYYRRLFPFYQYFRWLNYGGVVKNYFQHREFSFTLKDDVYVRYQSFNNQ 65

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           +EL+K++ K CP KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR CCS
Sbjct: 66  SELEKEMQKMCPYKIDIGAVYSHRPSLHNTVKSGTFQAQEKELVFDIDMTDYDDVRRCCS 125

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            ADIC KCW  M+IA +ILD AL EDF F+  LWV+SGRRG+HCWVCD++A  L    RS
Sbjct: 126 SADICPKCWTLMTIAVRILDRALAEDFGFKHRLWVYSGRRGVHCWVCDDSARKLSQAERS 185

Query: 181 CLAEYMSVLTAN--PVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTK 237
            +AEY+SV+      +KKV L  + +HP + ++  ++E  FEK  L +Q++L  K+   K
Sbjct: 186 AVAEYLSVVKGGEETIKKVQLP-ETIHPFIGKSLKMVERYFEKYALVDQDILENKQCWDK 244

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLE 296
           V+ LV     R  + +E+++      VE+WD+L + +   +A   D R+     +EI+L+
Sbjct: 245 VIALVPEV-ARESLLREFSKARSS--VERWDKLSSCL---EATGKDFRRYSNIPKEIMLQ 298

Query: 297 LAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
             YPRLD++VSKG+NHLLKSPF VHPKTG+I
Sbjct: 299 FCYPRLDVNVSKGLNHLLKSPFSVHPKTGRI 329


>gi|47498036|ref|NP_998870.1| primase, DNA, polypeptide 1 (49kDa) [Xenopus (Silurana) tropicalis]
 gi|45708855|gb|AAH67914.1| primase, polypeptide 1, 49kDa [Xenopus (Silurana) tropicalis]
          Length = 420

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 165/331 (49%), Positives = 223/331 (67%), Gaps = 15/331 (4%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSP 62
           YDP SL ++LP YY+R+FP+  Y RWL YG +  + F  REFSFTL  D Y RY S+N+ 
Sbjct: 6   YDPASLPDLLPLYYRRLFPFYQYFRWLNYGGVVKNYFHHREFSFTLKDDAYVRYQSFNNQ 65

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           +EL+K++ K CP KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR CCS
Sbjct: 66  SELEKEMQKMCPYKIDIGAVYSHKPSLHNTVKSGTFQAQEKELVFDIDMTDYDDVRRCCS 125

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            ADIC KCW  M+IA +ILD AL EDF FQ  LWV+SGRRG+HCWVCD++A  L    RS
Sbjct: 126 SADICPKCWTLMTIAVRILDRALAEDFGFQHRLWVYSGRRGVHCWVCDDSARKLSQAERS 185

Query: 181 CLAEYMSVLTAN--PVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTK 237
            +AEY+SV+      +KKV L+ D +HP + ++  ++E  FEK  L +Q++L  K+   K
Sbjct: 186 AVAEYLSVVKGGEETIKKVQLS-DPIHPFIGKSLKMVERYFEKYALVDQDILENKQCWDK 244

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLE 296
           V+ LV     R  + +E+++      VE+WD+L + +   +A   D R+     +EI+L+
Sbjct: 245 VVALVPEV-ARENLLREFSKARSS--VERWDKLSSCL---EATVKDLRRHSNIPKEIMLQ 298

Query: 297 LAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
             YPRLD++VSKG+NHLLKSPF VHPKTG+I
Sbjct: 299 FCYPRLDVNVSKGLNHLLKSPFSVHPKTGRI 329


>gi|195440358|ref|XP_002068009.1| GK11955 [Drosophila willistoni]
 gi|194164094|gb|EDW78995.1| GK11955 [Drosophila willistoni]
          Length = 435

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 158/336 (47%), Positives = 217/336 (64%), Gaps = 13/336 (3%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           YD   L +MLP YY+R+FP+ P+ RWL YG  ++  F  RE SFTL+ DIY RY+ + + 
Sbjct: 19  YDANILPDMLPVYYRRLFPHLPFYRWLSYGLSEDSIFCNREISFTLHDDIYIRYLCFETQ 78

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGA 122
            EL+K++  R P KID+G + +  PK+  +    +P  +ELVFDIDMTDYDDVR CCSGA
Sbjct: 79  AELEKEICSRNPYKIDIGPVMNTKPKN-FRAGGLSPVQRELVFDIDMTDYDDVRTCCSGA 137

Query: 123 DICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCL 182
           ++C KCW++M +A +ILD ALREDF F+ +LWVFSGRRGIHCWVCD+ A  LD RGR  +
Sbjct: 138 EVCLKCWKFMVLAARILDQALREDFGFEHILWVFSGRRGIHCWVCDKQARHLDTRGRGAV 197

Query: 183 AEYMSVLTANPVKKVFLT----GDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTK 237
           AEY+++++   V          GD  H  +KRA  ++E  FE+ +LE+Q L  T +  +K
Sbjct: 198 AEYLNIISYVNVMGTNAARCQLGDRTHHSVKRALKLVEPLFEEIILEDQNLFGTPKGLSK 257

Query: 238 VLGLVSNGDIRAEIEK--EWTRIGPGQDVEKWDRLVAIIKHHQAKNS---DRKLKYAIEE 292
           +L ++S    R E+E   + T          W+  V      +   +    RKLK+ +EE
Sbjct: 258 LLLMISEDSARNELESYLQKTHEDGAHSRSIWESFVRYANSMRTSGNVLWSRKLKHIVEE 317

Query: 293 ILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           + L L YPRLDI+V+KG NHLLKSPFC+HP TGK+C
Sbjct: 318 VQLCLLYPRLDINVTKGFNHLLKSPFCIHPATGKVC 353


>gi|666989|emb|CAA56196.1| DNA polymerase subunit A [Drosophila melanogaster]
          Length = 438

 Score =  306 bits (784), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 160/340 (47%), Positives = 219/340 (64%), Gaps = 19/340 (5%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           Y+PE L +MLP YY+R+FP+ P+ RWL YG+ ++  F  RE SFTL  DIY RY+ +++ 
Sbjct: 23  YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQ 82

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDHLQ-HSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
            EL+K++  R P KID+G +    PK+H       TP  +ELVFDIDMTDYD+VR CCSG
Sbjct: 83  AELEKEICSRNPIKIDIGPVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSG 142

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
           A +C KCW++M +A ++LD AL EDF F+ ++W+FSGRRGIHCWVCD  A  LDGRGR  
Sbjct: 143 AGVCLKCWKFMVLAARVLDVALAEDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYA 202

Query: 182 LAEYMSVLT----ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
            AEY++++T    A         GD  H  +KRA  I+E  FE++ LE+Q L  T +  T
Sbjct: 203 EAEYLNIITYASFAGGNSPRCSMGDRPHHSIKRALKIVEPMFEEIVLEDQNLFGTPKGVT 262

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLV--AIIKHHQAKNS------DRKLKY 288
           K+L +V +   R E+E   + +    +     RLV  + IK+  +  +       RKLK 
Sbjct: 263 KLLNMVHDDAARGELE---SYMQKNLEDGAHSRLVWESFIKYANSMRTSTTSAWSRKLKN 319

Query: 289 AIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            + EI L L YPRLDI+V++G NHLLK+PFC+HP TGK+C
Sbjct: 320 IVAEIQLGLLYPRLDINVTRGFNHLLKAPFCIHPATGKVC 359


>gi|213514838|ref|NP_001135348.1| DNA primase small subunit [Salmo salar]
 gi|209735110|gb|ACI68424.1| DNA primase small subunit [Salmo salar]
          Length = 423

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 165/334 (49%), Positives = 222/334 (66%), Gaps = 15/334 (4%)

Query: 2   ADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISY 59
           A  Y   SL ++LP YY+R+FP+  Y RWL YG +  + F+ REFSFTL  DIY RY S+
Sbjct: 3   AADYHQASLPDLLPLYYRRLFPFSQYHRWLNYGGVTKNYFQNREFSFTLKDDIYVRYQSF 62

Query: 60  NSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRN 117
           ++ NEL+K++ K  P KID+GA+Y   P  H  ++   F    KELVFDIDMTDYDDVR+
Sbjct: 63  STQNELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKSGSFQALEKELVFDIDMTDYDDVRS 122

Query: 118 CCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGR 177
           CCSGADIC KCW  M+IA +ILD ALR+DF FQ  LWV+SGRRG+HCWVCDEAA  L   
Sbjct: 123 CCSGADICPKCWTLMTIAIRILDRALRDDFGFQHCLWVYSGRRGVHCWVCDEAARKLSVA 182

Query: 178 GRSCLAEYMSVLTAN--PVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKER 234
            RS +AEY+S++      V+KV L+ D +HP +  +  ++E  F +  L  Q++L +KE 
Sbjct: 183 ARSAVAEYLSLVKGGEETVRKVVLS-DPIHPFVMESLTVVERYFSQYALLGQDILGSKEA 241

Query: 235 QTKVLGLVSNGDIRAEIEKEW-TRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEI 293
             KVL L+   D+R ++ + + T   P     +WD L ++ +    + + +K  Y   EI
Sbjct: 242 VDKVLALLPE-DVRKKLLQYFQTEKNPET---RWDILKSMAQ--DKRTTAKKGHYFEMEI 295

Query: 294 LLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           +L+  YPRLD++VSKGVNHLLKSPF VHPKTG+I
Sbjct: 296 MLQYCYPRLDVNVSKGVNHLLKSPFSVHPKTGRI 329


>gi|426224923|ref|XP_004006618.1| PREDICTED: DNA primase small subunit [Ovis aries]
          Length = 418

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 158/333 (47%), Positives = 220/333 (66%), Gaps = 10/333 (3%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPYG Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   EAFDPAELPELLKLYYRRLFPYGQYYRWLNYGGVVKNYFQHREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS ADIC KCW  M++A  I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct: 122 CSSADICSKCWTLMTMAIHIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           RS + EY+S++     VKK     + +HP ++++  II+  FE+  L +Q++L  KE   
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFVRKSINIIKKYFEQYALVDQDILENKESWD 241

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILL 295
           K+L LV    +R E+++ + R      +++W+ L   I  +Q  N + K    +E EI+L
Sbjct: 242 KILALVPET-MRDELQQGFQR--HSNSLQRWENLKNTINKYQKNNKNDKCGPWLEWEIML 298

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +  +PRLDI+VSKG+NHLLKSPF VHPKTG+I 
Sbjct: 299 QYCFPRLDINVSKGINHLLKSPFSVHPKTGRIS 331


>gi|327264530|ref|XP_003217066.1| PREDICTED: DNA primase small subunit-like [Anolis carolinensis]
          Length = 555

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/341 (48%), Positives = 226/341 (66%), Gaps = 17/341 (4%)

Query: 1   MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYIS 58
           MAD YD  SL ++LP YY+R+FP+G Y RWL YG++  + F++REFSFTL  DIY RY S
Sbjct: 1   MAD-YDSGSLPDLLPLYYRRLFPFGLYGRWLRYGDVTKNYFQRREFSFTLRDDIYVRYQS 59

Query: 59  YNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVR 116
           +N+P EL+K++ K CP KID+GA+Y   P  H  +  S F  + KELVFDIDMTDYDDVR
Sbjct: 60  FNTPQELEKEIQKMCPYKIDIGAVYSHKPIQHNTVHMSAFQAQEKELVFDIDMTDYDDVR 119

Query: 117 NCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDG 176
            CCS ADIC KCW  M+IA +I+D +L EDF  +  LWV+SGRRG+HCWVCD++      
Sbjct: 120 RCCSSADICSKCWTLMTIAIRIIDRSLVEDFGIKHRLWVYSGRRGVHCWVCDDSVRKWSS 179

Query: 177 RGRSCLAEYMSVLTAN--PVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKE 233
             RS   EY++V+      +KKV L  ++ HP ++++  +I++ FE+  L  Q++L +KE
Sbjct: 180 TLRSAAVEYLTVVKGGGETIKKVVLLENI-HPFIRKSIDVIKEYFEEYALVGQDILGSKE 238

Query: 234 RQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHH-----QAKNSDRKLKY 288
              KVL LVS   +R  ++ E+ R      +++W+ L   +K+      Q  N   + K 
Sbjct: 239 SYEKVLALVSES-VRENLQTEF-RKKNHDSLQRWNILKKQVKNSMRSLFQFSNLTLQTKQ 296

Query: 289 AIE-EILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
             E EI+L+  +PRLDI+VSKG+NHLLKSPF VHPKTG+I 
Sbjct: 297 RTEWEIMLQYCFPRLDINVSKGINHLLKSPFSVHPKTGRIS 337


>gi|270483790|ref|NP_001139337.1| DNA primase small subunit [Bos taurus]
 gi|296487555|tpg|DAA29668.1| TPA: primase, DNA, polypeptide 1 (49kDa) [Bos taurus]
          Length = 418

 Score =  304 bits (779), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 157/333 (47%), Positives = 219/333 (65%), Gaps = 10/333 (3%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPYG Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   EAFDPAELPELLKLYYRRLFPYGQYYRWLNYGGVVKNYFQHREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS ADIC KCW  M++A  I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct: 122 CSSADICSKCWTLMTMAIHIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           RS + EY+S++     VKK     + +HP ++++  II+  FE+  L +Q++L  K+   
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFVRKSINIIKKYFEQYALVDQDILENKQSWD 241

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILL 295
           K+L LV    +R E+++ + R       ++W+ L   I  +Q  N + K    +E EI+L
Sbjct: 242 KILALVPET-VRDELQQGFQR--QSNSPQRWETLKNTINKYQKNNKNDKCGLWLEWEIML 298

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +  +PRLDI+VSKG+NHLLKSPF VHPKTG+I 
Sbjct: 299 QYCFPRLDINVSKGINHLLKSPFSVHPKTGRIS 331


>gi|291409307|ref|XP_002720962.1| PREDICTED: DNA primase polypeptide 1 [Oryctolagus cuniculus]
          Length = 420

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 158/332 (47%), Positives = 217/332 (65%), Gaps = 10/332 (3%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   ESFDPAELPELLKLYYRRLFPYAQYYRWLNYGGVVKNYFQHREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + N+L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQNDLEKEMQKMNPYKIDIGAVYSHRPSQHSTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS ADIC KCW  M++A  I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct: 122 CSSADICSKCWTLMTMAILIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           RS + EY+S++     VKK     + +HP ++R+  II+  FE+  L  Q++L  KE   
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLNEKVHPFVRRSINIIKKYFEEYALVGQDILENKESWD 241

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILL 295
           K+L LV    I A++++ + +      +++W+ L   I  HQ    + K    +E EI+L
Sbjct: 242 KILALVPEA-IHADLQQGFQKCHSS--LQRWEHLKKTIAKHQNNTKNDKCAPWLEWEIML 298

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           +  +PRLDI+VSKG+NHLLKSPF VHPKTG+I
Sbjct: 299 QYCFPRLDINVSKGINHLLKSPFSVHPKTGRI 330


>gi|339241519|ref|XP_003376685.1| DNA primase small subunit [Trichinella spiralis]
 gi|316974586|gb|EFV58070.1| DNA primase small subunit [Trichinella spiralis]
          Length = 911

 Score =  301 bits (770), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 144/331 (43%), Positives = 219/331 (66%), Gaps = 10/331 (3%)

Query: 2   ADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNS 61
           A++++   L  MLP YY+++FP+ PY++WL YG+ D FR+REF+F L G IY RY S+++
Sbjct: 504 AEEFEESYLHGMLPLYYRKLFPFKPYIKWLRYGSDDYFRRREFAFILKGSIYLRYKSFDN 563

Query: 62  PNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
            +  +K++I   P+KID+GA+Y++ PK       F P  KE+VFDID++DYD++R CC G
Sbjct: 564 GSYFEKEVISSVPEKIDIGAVYNVEPKCKQNSETFLPVEKEMVFDIDLSDYDEIRECCKG 623

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
             IC+ CW ++  A K++D  L +DF F+  LWV+SGRRG+HCWV D+ A  ++   RS 
Sbjct: 624 GSICKICWHFIVAAIKVIDPILLDDFGFEHRLWVYSGRRGVHCWVADKEARNMNNEERSA 683

Query: 182 LAEYMSVLTA--NPVKKVFLTGD-VLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKV 238
           +AEY+SV+       KKVFL  + VLHP ++R  ++  + F  LL+E   L ++E    +
Sbjct: 684 VAEYISVVMGGEGQKKKVFLNDESVLHPVIQRGLVVASNIFPVLLKEYSWLDSQESWEAM 743

Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRL-VAIIKHHQAKNSDRKLKYAIEEILLEL 297
           L L+ +  I   +E  + ++   +  E+W  + +A+ K H   N     ++A+ EILL+ 
Sbjct: 744 LKLIPDKTIADALESIFEKVDTAE--ERWQAIKMALSKPHIPDNC----RFAVSEILLQY 797

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            YPRLD++VSKG+NHLLKSPFC+HPKTGK+C
Sbjct: 798 IYPRLDMNVSKGINHLLKSPFCIHPKTGKVC 828


>gi|442757837|gb|JAA71077.1| Putative eukaryotic-type dna primase catalytic small subunit
           [Ixodes ricinus]
          Length = 420

 Score =  300 bits (769), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 153/332 (46%), Positives = 213/332 (64%), Gaps = 12/332 (3%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNF--RKREFSFTLNGDIYARYISYN 60
           D+YDP+  ++ LP YY ++FP   + +WL YG +D    + RE SFTL  D+Y R+ S++
Sbjct: 12  DRYDPKHFSDYLPLYYSKLFPSSTFYKWLTYGGVDKTMGQNREISFTLEDDVYLRFQSFS 71

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
              +L+K L  + P KID+GAIY+  PK H   S F P+ KELVFDIDMTDYD+VR CC 
Sbjct: 72  EQKDLEKALRDKNPHKIDIGAIYNHNPKLHHHESTFAPREKELVFDIDMTDYDEVRTCCQ 131

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           GADIC  CW +M++A +ILD  LREDF F+ +LWV+SGRRG+HCWVCD  A  L    RS
Sbjct: 132 GADICNNCWLFMTLAMQILDRTLREDFGFEHILWVYSGRRGVHCWVCDAKARKLHSSARS 191

Query: 181 CLAEYMSVLT--ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTK 237
            +A Y+SV+   A+  KKV +    +HP +K +  I++  F  L LE Q +L   E    
Sbjct: 192 AIANYVSVIKGGAHSSKKVSIFK-TIHPSIKASLKILKKSFSTLTLENQRIL---EDDKF 247

Query: 238 VLGLVSN-GDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLE 296
             G+++N  D  ++ E     + P    ++W   V  ++  + KN   K ++ +EE++LE
Sbjct: 248 WHGVINNCPDESSKEEMRNCVLSPTSSEQRWAEFVDAVERLKRKN--LKCQFLVEEVMLE 305

Query: 297 LAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           L YPRLDI V+KGV HLLK+PFCVHPKTG++C
Sbjct: 306 LCYPRLDIAVTKGVQHLLKAPFCVHPKTGRVC 337


>gi|348580914|ref|XP_003476223.1| PREDICTED: DNA primase small subunit isoform 2 [Cavia porcellus]
          Length = 419

 Score =  300 bits (767), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 157/331 (47%), Positives = 217/331 (65%), Gaps = 9/331 (2%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   ESFDPAELPELLKLYYRRLFPYPQYYRWLNYGGVVKNYFQNREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNAVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS ADIC KCW  M++A  I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct: 122 CSSADICSKCWTLMTMAIHIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           RS + EY+S++     VKK     + +HP ++R+  II+  FE+  L +Q++L  KE   
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFVRRSIHIIKKYFEEYALVDQDILENKESWD 241

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLE 296
           K+L LV  G I  E++  + +      V++W+ L  +I   Q   +D+   +   EI+L+
Sbjct: 242 KILALVP-GTIHEELQTCFQK--SHNSVQRWEHLKRVINTCQNIKNDKCGPWLEWEIMLQ 298

Query: 297 LAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
             +PRLDI+VSKG+NHLLKSPF VHPKTG+I
Sbjct: 299 YCFPRLDINVSKGINHLLKSPFSVHPKTGRI 329


>gi|395835523|ref|XP_003790727.1| PREDICTED: DNA primase small subunit [Otolemur garnettii]
          Length = 418

 Score =  300 bits (767), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 156/331 (47%), Positives = 214/331 (64%), Gaps = 9/331 (2%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPY  Y RWL YG +  + FR REFSFTL  DIY RY S++
Sbjct: 2   ETFDPAELPELLKIYYRRLFPYAQYYRWLNYGGVIKNYFRNREFSFTLKDDIYIRYQSFS 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           +   L+K++ K  P KID+GA+Y   P  H  ++  VF P+ KELVFDIDMTDYDDVR C
Sbjct: 62  NQKNLEKEIQKMNPYKIDIGAVYSHKPSQHNTVKLGVFQPQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS ADIC KCW  M++A  I+D  L+EDF F+  LWV+SGRRG+HCWVCDE A  L    
Sbjct: 122 CSSADICSKCWTLMTMAIYIIDRTLKEDFGFKHCLWVYSGRRGVHCWVCDERARKLSSTV 181

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           RS + EY+S++     VKK     + +HP ++R+  II+  FEK  L +Q++L  KE   
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFVRRSVNIIKKYFEKYALVDQDILENKESWD 241

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLE 296
           KVL LV +  I  E+++ + +       ++W+ L      +Q+   + K    + EI+++
Sbjct: 242 KVLALVPSP-IHDELQQNFQKSHSSH--QRWEHLKKAASKYQSNVKNEKCGPWLWEIMVQ 298

Query: 297 LAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
             +PRLDI+V+KG+NHLLKSPF VHPKTG I
Sbjct: 299 YCFPRLDINVTKGINHLLKSPFSVHPKTGTI 329


>gi|3676248|emb|CAA09723.1| DNA polymerase alpha subunit IV (primase) [Rattus norvegicus]
          Length = 415

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 155/329 (47%), Positives = 216/329 (65%), Gaps = 9/329 (2%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSP 62
           +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N+ 
Sbjct: 6   FDPAELPELLKLYYRRLFPYAQYYRWLNYGGVTKNYFQHREFSFTLKDDIYIRYQSFNNQ 65

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR CCS
Sbjct: 66  SDLEKEMQKMNPYKIDIGAVYSHRPSQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCS 125

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    RS
Sbjct: 126 SADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRS 185

Query: 181 CLAEYMSVLT-ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKV 238
            + EY+S++   + VKK     + +HP ++++  II+  FE+  L +Q++L  KE   K+
Sbjct: 186 GIVEYLSLIKGGHDVKKKVHLNEKVHPFVRKSINIIKKYFEEYALVDQDILENKENWDKI 245

Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELA 298
           L LV    +  E++K + R       ++W+ L  +    Q   +D+   +   EI+L+  
Sbjct: 246 LALVPET-VHDELQKGFQRFHSSP--QRWEYLRKVASAPQNTKNDKCGPWLEWEIMLQYC 302

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           +PRLDI+VSKGVNHLLKSPF VHPKTG+I
Sbjct: 303 FPRLDINVSKGVNHLLKSPFSVHPKTGRI 331


>gi|354488127|ref|XP_003506222.1| PREDICTED: DNA primase small subunit [Cricetulus griseus]
 gi|344256383|gb|EGW12487.1| DNA primase small subunit [Cricetulus griseus]
          Length = 419

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 155/330 (46%), Positives = 215/330 (65%), Gaps = 9/330 (2%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSP 62
           +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+++ 
Sbjct: 4   FDPAELPELLKLYYRRLFPYAQYYRWLNYGGVTKNYFQHREFSFTLKDDIYIRYQSFSNQ 63

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           +EL+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR CCS
Sbjct: 64  SELEKEMQKMNPYKIDIGAVYSHRPSQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCS 123

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    RS
Sbjct: 124 SADICSKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRS 183

Query: 181 CLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKV 238
            + EY+S++     VKK     + LHP ++++  II   FE+  L  Q++L  KE   K+
Sbjct: 184 GIVEYLSLVKGGQDVKKKVHLSEKLHPFVRKSINIIRKYFEEYALVGQDILENKENWDKI 243

Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELA 298
           L LV    I  E+++ + R+      ++W+ L  +I   Q   +D+   +   EI+++  
Sbjct: 244 LALVPET-IHEELQRGFQRLHSSP--QRWEYLRKVISTPQNMKNDKCGPWLEWEIMVQYC 300

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +PRLDI+VSKG+NHLLKSPF VHPKTG+I 
Sbjct: 301 FPRLDINVSKGINHLLKSPFSVHPKTGRIS 330


>gi|148692588|gb|EDL24535.1| DNA primase, p49 subunit [Mus musculus]
          Length = 417

 Score =  297 bits (761), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 153/330 (46%), Positives = 215/330 (65%), Gaps = 9/330 (2%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSP 62
           +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N+ 
Sbjct: 4   FDPAELPELLKLYYRRLFPYAQYYRWLNYGGVTKNYFQHREFSFTLKDDIYIRYQSFNNQ 63

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           +EL+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR CCS
Sbjct: 64  SELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCS 123

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    RS
Sbjct: 124 SADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRS 183

Query: 181 CLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKV 238
            + EY+S++     VKK     + +HP ++++  II+  FE+  L  Q++L  KE   K+
Sbjct: 184 GIVEYLSLVKGGQDVKKKVHLNEKVHPFVRKSINIIKKYFEEYALVGQDILENKENWDKI 243

Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELA 298
           L LV +  I  E+++ + +       ++W+ L  +    Q   +D+   +   E++L+  
Sbjct: 244 LALVPSP-IHDELQRGFQKFHSSP--QRWEHLRKVANSSQNMKNDKCGPWLEWEVMLQYC 300

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +PRLD++VSKGVNHLLKSPF VHPKTG+I 
Sbjct: 301 FPRLDVNVSKGVNHLLKSPFSVHPKTGRIS 330


>gi|6679459|ref|NP_032947.1| DNA primase small subunit [Mus musculus]
 gi|130897|sp|P20664.1|PRI1_MOUSE RecName: Full=DNA primase small subunit; AltName: Full=DNA primase
           49 kDa subunit; Short=p49
 gi|303661|dbj|BAA02744.1| primase small subunit [Mus musculus]
 gi|26353584|dbj|BAC40422.1| unnamed protein product [Mus musculus]
 gi|26354202|dbj|BAC40729.1| unnamed protein product [Mus musculus]
 gi|58477611|gb|AAH89544.1| DNA primase, p49 subunit [Mus musculus]
          Length = 417

 Score =  297 bits (761), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 153/330 (46%), Positives = 214/330 (64%), Gaps = 9/330 (2%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSP 62
           +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N+ 
Sbjct: 4   FDPAELPELLKLYYRRLFPYAQYYRWLNYGGVTKNYFQHREFSFTLKDDIYIRYQSFNNQ 63

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           +EL+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR CCS
Sbjct: 64  SELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCS 123

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    RS
Sbjct: 124 SADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRS 183

Query: 181 CLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKV 238
            + EY+S++     VKK     + +HP ++++  II+  FE+  L  Q++L  KE   K+
Sbjct: 184 GIVEYLSLVKGGQDVKKKVHLNEKVHPFVRKSINIIKKYFEEYALVGQDILENKENWDKI 243

Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELA 298
           L LV    I  E+++ + +       ++W+ L  +    Q   +D+   +   E++L+  
Sbjct: 244 LALVPET-IHDELQRGFQKFHSSP--QRWEHLRKVANSSQNMKNDKCGPWLEWEVMLQYC 300

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +PRLD++VSKGVNHLLKSPF VHPKTG+I 
Sbjct: 301 FPRLDVNVSKGVNHLLKSPFSVHPKTGRIS 330


>gi|4506051|ref|NP_000937.1| DNA primase small subunit [Homo sapiens]
 gi|114644211|ref|XP_001168535.1| PREDICTED: DNA primase small subunit [Pan troglodytes]
 gi|397509055|ref|XP_003824952.1| PREDICTED: DNA primase small subunit [Pan paniscus]
 gi|1346792|sp|P49642.1|PRI1_HUMAN RecName: Full=DNA primase small subunit; AltName: Full=DNA primase
           49 kDa subunit; Short=p49
 gi|510406|emb|CAA52377.1| DNA primase (subunit p48) [Homo sapiens]
 gi|13528951|gb|AAH05266.1| Primase, DNA, polypeptide 1 (49kDa) [Homo sapiens]
 gi|157928534|gb|ABW03563.1| primase, DNA, polypeptide 1 (49kDa) [synthetic construct]
 gi|157929174|gb|ABW03872.1| primase, DNA, polypeptide 1 (49kDa) [synthetic construct]
 gi|261859960|dbj|BAI46502.1| primase, DNA, polypeptide 1 [synthetic construct]
 gi|410207860|gb|JAA01149.1| primase, DNA, polypeptide 1 (49kDa) [Pan troglodytes]
 gi|410266144|gb|JAA21038.1| primase, DNA, polypeptide 1 (49kDa) [Pan troglodytes]
 gi|410290882|gb|JAA24041.1| primase, DNA, polypeptide 1 (49kDa) [Pan troglodytes]
 gi|410338237|gb|JAA38065.1| primase, DNA, polypeptide 1 (49kDa) [Pan troglodytes]
          Length = 420

 Score =  297 bits (760), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 154/333 (46%), Positives = 217/333 (65%), Gaps = 10/333 (3%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   ETFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct: 122 CSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           RS + EY+S++     VKK     + +HP ++++  II+  FE+  L  Q++L  KE   
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWD 241

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILL 295
           K+L LV    I  E+++ + +      +++W+ L  +   +Q    + K    +E EI+L
Sbjct: 242 KILALVPET-IHDELQQSFQK--SHNSLQRWEHLKKVASRYQNNIKNDKYGPWLEWEIML 298

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +  +PRLDI+VSKG+NHLLKSPF VHPKTG+I 
Sbjct: 299 QYCFPRLDINVSKGINHLLKSPFSVHPKTGRIS 331


>gi|74228843|dbj|BAE21907.1| unnamed protein product [Mus musculus]
          Length = 417

 Score =  296 bits (759), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 153/330 (46%), Positives = 213/330 (64%), Gaps = 9/330 (2%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSP 62
           +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N+ 
Sbjct: 4   FDPAELPELLKLYYRRLFPYAQYYRWLNYGGVTKNYFQHREFSFTLKDDIYIRYQSFNNQ 63

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           +EL+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR CCS
Sbjct: 64  SELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCS 123

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            ADIC KCW  M++A  I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    RS
Sbjct: 124 SADICSKCWTLMTMAMSIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRS 183

Query: 181 CLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKV 238
            + EY+S++     VKK     + +HP ++++  II+  FE+  L  Q++L  KE   K+
Sbjct: 184 GIVEYLSLVKGGQDVKKKVHLNEKVHPFVRKSINIIKKYFEEYALVGQDILENKENWDKI 243

Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELA 298
           L LV    I  E+++ + +       ++W+ L  +    Q   +D+   +   E++L+  
Sbjct: 244 LALVPET-IHDELQRGFQKFHSSP--QRWEHLRKVANSSQNMKNDKCGPWLEWEVMLQYC 300

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +PRLD++VSKGVNHLLKSPF VHPKTG+I 
Sbjct: 301 FPRLDVNVSKGVNHLLKSPFSVHPKTGRIS 330


>gi|426373076|ref|XP_004053438.1| PREDICTED: DNA primase small subunit [Gorilla gorilla gorilla]
          Length = 420

 Score =  296 bits (758), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 153/333 (45%), Positives = 217/333 (65%), Gaps = 10/333 (3%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   ETFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct: 122 CSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           RS + EY+S++     +KK     + +HP ++++  II+  FE+  L  Q++L  KE   
Sbjct: 182 RSGIVEYLSLVKGGQDIKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWD 241

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILL 295
           K+L LV    I  E+++ + +      +++W+ L  +   +Q    + K    +E EI+L
Sbjct: 242 KILALVPET-IHDELQQRFQK--SHNSLQRWEHLKKVASRYQNNIKNDKYGPWLEWEIML 298

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +  +PRLDI+VSKG+NHLLKSPF VHPKTG+I 
Sbjct: 299 QYCFPRLDINVSKGINHLLKSPFSVHPKTGRIS 331


>gi|417400583|gb|JAA47222.1| Putative eukaryotic-type dna primase catalytic small subunit
           [Desmodus rotundus]
          Length = 418

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 156/329 (47%), Positives = 218/329 (66%), Gaps = 10/329 (3%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSP 62
           +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N+ 
Sbjct: 4   FDPAELPELLKLYYRRLFPYAQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQ 63

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR+CCS
Sbjct: 64  SDLEKEMQKMNPYKIDIGAVYSHRPSQHNTVKLGAFQAQEKELVFDIDMTDYDDVRSCCS 123

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    RS
Sbjct: 124 SADICSKCWTLMTMATRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRS 183

Query: 181 CLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKV 238
            + EY+S++     VKK     + +HP ++++  II   FE+  L EQ++L  KE   K+
Sbjct: 184 GIVEYLSLVKGGQDVKKKVHLSENIHPFVRKSINIINKYFEEYALVEQDILGNKESCDKI 243

Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELA 298
           L LV    IR +++K + +      +++W  L   +K +  KN ++   +   EI+L+  
Sbjct: 244 LALVPET-IRDDLQKIFQK--HHSSLQRWKHLKEYLKKNDIKN-EKCGPWLEWEIMLQYC 299

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           +PRLDI+VSKG+NHLLKSPF VHPKTG+I
Sbjct: 300 FPRLDINVSKGINHLLKSPFSVHPKTGRI 328


>gi|395540757|ref|XP_003772317.1| PREDICTED: DNA primase small subunit [Sarcophilus harrisii]
          Length = 576

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 153/333 (45%), Positives = 220/333 (66%), Gaps = 11/333 (3%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   EAFDPAELPELLKLYYRRLFPYSQYYRWLNYGGVVKNYFQHREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + +E++K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQSEMEKEIQKLNPYKIDIGAVYSHRPIQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS ADIC KCW  M++A  I+D AL+EDF F+  LWV+SGRRG+HCWVCDE    L    
Sbjct: 122 CSSADICSKCWTLMTMAIHIIDRALKEDFGFKHCLWVYSGRRGVHCWVCDETVRKLSSAV 181

Query: 179 RSCLAEYMSVLTANP--VKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQ 235
           RS + EY+S++       KKV L+  + HP ++++  I+E  FE+  L  Q++L  KE  
Sbjct: 182 RSGIVEYLSLVKGGEDMKKKVHLSPKI-HPFIRKSINIVEKYFEEYALLGQDILENKENW 240

Query: 236 TKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILL 295
            K+L LV    + AE+++ + +      V++W+ L  ++  +++  +++  ++   EI+L
Sbjct: 241 NKILMLVPE-SLHAELQQGFQKF--HNSVQRWEHLKQVVSTYRSVRNEKFGQHIDWEIML 297

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +  +PRLDI+VSKG+NHLLKSPF VHPKTG+I 
Sbjct: 298 QYCFPRLDINVSKGINHLLKSPFSVHPKTGRIS 330


>gi|344266233|ref|XP_003405185.1| PREDICTED: DNA primase small subunit [Loxodonta africana]
          Length = 417

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/334 (46%), Positives = 216/334 (64%), Gaps = 16/334 (4%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSP 62
           +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N+ 
Sbjct: 4   FDPADLPELLKIYYRRLFPYAQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQ 63

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           +EL+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR CCS
Sbjct: 64  SELEKEMQKMNPYKIDIGAVYSHRPSQHSTVKLGAFQAQEKELVFDIDMTDYDDVRRCCS 123

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    RS
Sbjct: 124 SADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRS 183

Query: 181 CLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKV 238
            + EY+S++   P +KK     + +HP ++R+  II   FE+  L  Q++L  KE   K+
Sbjct: 184 GIVEYLSLVKGGPDIKKKVHLSEKIHPFVRRSINIIIRYFEEYALVGQDILENKESWDKI 243

Query: 239 LGLVS---NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAK-NSDRKLKYAIEEIL 294
           L LV    + D++   +K  + +      ++W+    +   +Q+   +DR   +   EI+
Sbjct: 244 LALVPETMHDDLQQGFQKYHSSL------QRWEYFKKVAGRYQSNVKNDRYGPWLEWEIM 297

Query: 295 LELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           L+  +PRLDI+VSKG+NHLLKSPF VHPKTG+I 
Sbjct: 298 LQYCFPRLDINVSKGINHLLKSPFSVHPKTGRIS 331


>gi|62898343|dbj|BAD97111.1| DNA primase small subunit, 49kDa variant [Homo sapiens]
          Length = 420

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 153/333 (45%), Positives = 217/333 (65%), Gaps = 10/333 (3%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + ++P  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   ETFNPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct: 122 CSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           RS + EY+S++     VKK     + +HP ++++  II+  FE+  L  Q++L  KE   
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWD 241

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILL 295
           K+L LV    I  E+++ + +      +++W+ L  +   +Q    + K    +E EI+L
Sbjct: 242 KILALVPET-IHDELQQSFQK--SHNSLQRWEHLKKVASRYQNNIKNDKYGPWLEWEIML 298

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +  +PRLDI+VSKG+NHLLKSPF VHPKTG+I 
Sbjct: 299 QYCFPRLDINVSKGINHLLKSPFSVHPKTGRIS 331


>gi|195171010|ref|XP_002026304.1| GL24698 [Drosophila persimilis]
 gi|194111199|gb|EDW33242.1| GL24698 [Drosophila persimilis]
          Length = 438

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 153/340 (45%), Positives = 215/340 (63%), Gaps = 19/340 (5%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           +DP  L +MLP YY+R+FP+ P+ RWL YG  ++  F  RE SFTL+ DIY RY+ + + 
Sbjct: 21  FDPTILPDMLPVYYRRLFPHQPFYRWLSYGLSEDGVFCNREISFTLHDDIYIRYLCFETQ 80

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKD-HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
            EL+K++  R P KID+G +    P +  +     TP  +ELVFDIDMTDYD+VR CCSG
Sbjct: 81  AELEKEICSRNPYKIDIGPVMHTRPTNFRIVPGGLTPVQRELVFDIDMTDYDEVRTCCSG 140

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
           A++C KCW++M +A ++LD ALREDF F+ +LWVFSGRRGIHCWVCD  A  LDGRGR  
Sbjct: 141 AEVCLKCWKFMVLAARVLDLALREDFGFEHILWVFSGRRGIHCWVCDHQARHLDGRGRYA 200

Query: 182 LAEYMSVL-------TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKE 233
           +AEY +++       + +P  ++   GD  H   KRA  IIE  FE+ ++E+Q L  T +
Sbjct: 201 VAEYFNIVSYVNFMGSNSPRCQL---GDRSHHSFKRALKIIEPLFEEIIIEDQNLFGTPK 257

Query: 234 RQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEK--WDRLVAIIKHHQAKNSD---RKLKY 288
              K+L ++ +   R E E    +        +  W+  +      +   ++   RKLK 
Sbjct: 258 GVNKLLHMIHDDGARTEFEGYLQKSHEDGAHSRLIWESFIKYSNSMRTSTANVWSRKLKN 317

Query: 289 AIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            ++E+ L L YPRLDI+V++G NHLLKSPFC+HP TGK+C
Sbjct: 318 IVQEVQLCLLYPRLDINVTRGFNHLLKSPFCIHPATGKVC 357


>gi|442757835|gb|JAA71076.1| Putative eukaryotic-type dna primase catalytic small subunit
           [Ixodes ricinus]
          Length = 420

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 151/332 (45%), Positives = 210/332 (63%), Gaps = 12/332 (3%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNF--RKREFSFTLNGDIYARYISYN 60
           D+YDP+  ++ LP YY ++FP   + +WL YG +D    + RE SFTL  D+Y R+ S++
Sbjct: 12  DRYDPKHFSDYLPLYYSKLFPSSTFYKWLTYGGVDKTMGQNREISFTLEDDVYLRFQSFS 71

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
              +L+K L  + P KID+GAIY+  PK H   S F P+ KELVFDIDMTDYD+VR CC 
Sbjct: 72  EQKDLEKALRDKNPHKIDIGAIYNHNPKLHHHESTFAPREKELVFDIDMTDYDEVRTCCQ 131

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           GADIC  CW +M++A +ILD  LREDF F+ +LWV+SGRRG+HCWVCD  A  L    RS
Sbjct: 132 GADICNNCWLFMTLAMQILDRTLREDFGFEHILWVYSGRRGVHCWVCDAKARKLHSSARS 191

Query: 181 CLAEYMSVLTA--NPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTK 237
            +A Y+SV+    +  KKV +      P +K +  I++  F  L LE Q +L   E    
Sbjct: 192 AIANYVSVIKGGXHSSKKVAIFK-TXXPSIKASLKILKKSFSTLTLENQRIL---EDDKF 247

Query: 238 VLGLVSN-GDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLE 296
             G+++N  D  ++ E     + P    ++W   V  ++  + KN   K ++ +EE++LE
Sbjct: 248 WHGVINNCPDESSKEEMRNCVLSPTSSEQRWAEFVDAVERLKRKN--LKCQFLVEEVMLE 305

Query: 297 LAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           L YPRLDI V+KGV HLLK+PFCVHPKTG++C
Sbjct: 306 LCYPRLDIAVTKGVQHLLKAPFCVHPKTGRVC 337


>gi|449447727|ref|XP_004141619.1| PREDICTED: DNA primase small subunit-like [Cucumis sativus]
 gi|449517297|ref|XP_004165682.1| PREDICTED: DNA primase small subunit-like [Cucumis sativus]
          Length = 450

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 149/334 (44%), Positives = 214/334 (64%), Gaps = 21/334 (6%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGN--------LDNFRKREFSFTLNGDIYARYISYNSPNEL 65
           L  YY ++FPY  + +W+ YGN           F +REFSFTL+ DIY R+ S+N+ +E+
Sbjct: 35  LKIYYGKLFPYADFFKWMSYGNDGKHPGSDQSYFGRREFSFTLDNDIYLRFQSFNNLSEM 94

Query: 66  KKDLIKRCPQKIDLGAIYDICPKD---HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGA 122
           +  + ++CP KID+G +Y + P     +   +VFTP  +ELVFDIDMTDYDDVR CCSGA
Sbjct: 95  EISIKEKCPFKIDIGPVYSVDPAKRHAYADDNVFTPVERELVFDIDMTDYDDVRYCCSGA 154

Query: 123 DICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCL 182
           D+C  CW  M+ A K++ T LR+DF F  +LWVFSGRRG+HCWVCD  A  L    R+ +
Sbjct: 155 DVCLDCWPLMTAAIKVIHTTLRDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAI 214

Query: 183 AEYMSVLTA--NPVKKVFLTGDVLHPHLKRAKL-IIEDQFE-KLLEEQELLSTKERQTKV 238
           AEY  +     N  KK+ LTG VLHP L R+   +++D FE +LL  Q++ ST+ER  K+
Sbjct: 215 AEYFHLYQGNENSRKKISLTGPVLHPFLVRSYTEVLKDSFESQLLCSQKIFSTEERYEKI 274

Query: 239 LGLVSNGDIRAEIEKEW--TRIGPGQDVE--KWDRLVAIIKHHQAKNSDRKLKYAIEEIL 294
           L ++ +  I +++   W   R     DV   +W++L ++++    K+  + ++  +EEI+
Sbjct: 275 LDMIPDESITSDLRGRWQDNRRSSKNDVNSLRWEQLKSLLQ--SGKHKAQGMRRHVEEIV 332

Query: 295 LELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
               YPRLD  V+K +NHLLK+PFCVHPKTG+IC
Sbjct: 333 FSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRIC 366


>gi|260819706|ref|XP_002605177.1| hypothetical protein BRAFLDRAFT_58959 [Branchiostoma floridae]
 gi|229290508|gb|EEN61187.1| hypothetical protein BRAFLDRAFT_58959 [Branchiostoma floridae]
          Length = 372

 Score =  295 bits (754), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 155/331 (46%), Positives = 205/331 (61%), Gaps = 51/331 (15%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           YD   L E+LP YYKR+FPYGPY +WL YG +    F  REFSFTL  DIY RY S++  
Sbjct: 16  YDRNDLPELLPIYYKRLFPYGPYYKWLSYGGVKKSYFHNREFSFTLKDDIYIRYQSFSDQ 75

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           +E++K++ +  P KID+GA++   PKDH  ++   F  + KELVFDIDMTDYDDVRNCCS
Sbjct: 76  SEMEKEIQRVMPYKIDIGAVFSHKPKDHKTVKPGAFQAQEKELVFDIDMTDYDDVRNCCS 135

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           GA+ICEKCW  M IA KI+D ALR+DF F   LWV+SGRRG+HCWVCDE+   L    R+
Sbjct: 136 GANICEKCWPLMVIAIKIVDRALRDDFGFDHRLWVYSGRRGVHCWVCDESTRQLSQTART 195

Query: 181 CLAEYMSVLTA--NPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTK 237
            +AEY+SV+    +  KKV L  D +HP LK A   +    ++ L ++Q++L T+     
Sbjct: 196 AIAEYLSVVKGGESQTKKVTLR-DPMHPSLKEALKTMSRHVDQYLFQQQDILGTE----- 249

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLEL 297
                                         DRL         K++ +K  Y + E++ + 
Sbjct: 250 ------------------------------DRL--------KKDNMKKCPYPLVEVMFQY 271

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            YPRLD++VSKGVNHLLKSPFC+HPKTG++C
Sbjct: 272 CYPRLDVNVSKGVNHLLKSPFCIHPKTGRVC 302


>gi|297692200|ref|XP_002823455.1| PREDICTED: DNA primase small subunit [Pongo abelii]
          Length = 420

 Score =  295 bits (754), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 154/332 (46%), Positives = 216/332 (65%), Gaps = 10/332 (3%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   ETFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct: 122 CSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           RS + EY+S++     VKK     + +HP ++++  II+  FE+  L  Q++L  KE   
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWD 241

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILL 295
           K+L LV    I  E+++ + +      +++W+ L  +    Q    + K    +E EI+L
Sbjct: 242 KILALVPET-IHDELQQSFQK--SHNSLQRWEHLKKVASKCQNNIKNDKYGPWLEWEIML 298

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           +  +PRLDI+VSKG+NHLLKSPF VHPKTG+I
Sbjct: 299 QYCFPRLDINVSKGINHLLKSPFSVHPKTGRI 330


>gi|125980129|ref|XP_001354097.1| GA20108 [Drosophila pseudoobscura pseudoobscura]
 gi|54641085|gb|EAL29836.1| GA20108 [Drosophila pseudoobscura pseudoobscura]
          Length = 438

 Score =  294 bits (753), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 153/340 (45%), Positives = 215/340 (63%), Gaps = 19/340 (5%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           +DP  L +MLP YY+R+FP+ P+ RWL YG  ++  F  RE SFTL+ DIY RY+ + + 
Sbjct: 21  FDPTILPDMLPVYYRRLFPHLPFYRWLSYGLSEDGVFCNREISFTLHDDIYIRYLCFETQ 80

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKD-HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
            EL+K++  R P KID+G +    P +  +     TP  +ELVFDIDMTDYD+VR CCSG
Sbjct: 81  AELEKEICSRNPYKIDIGPVMHTRPTNFRIVPGGLTPVQRELVFDIDMTDYDEVRTCCSG 140

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
           A++C KCW++M +A ++LD ALREDF F+ +LWVFSGRRGIHCWVCD  A  LDGRGR  
Sbjct: 141 AEVCLKCWKFMVLAARVLDLALREDFGFEHILWVFSGRRGIHCWVCDHQARHLDGRGRYA 200

Query: 182 LAEYMSVL-------TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKE 233
           +AEY +++       + +P  ++   GD  H   KRA  IIE  FE+ ++E+Q L  T +
Sbjct: 201 VAEYFNIVSYVNFMGSNSPRCQL---GDRSHHSFKRALKIIEPLFEEIIIEDQNLFGTPK 257

Query: 234 RQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEK--WDRLVAIIKHHQAKNSD---RKLKY 288
              K+L ++ +   R E E    +        +  W+  +      +   ++   RKLK 
Sbjct: 258 GVNKLLHMIHDDGARTEFEGYLQKSHEDGAHSRLIWESFIKYSNSMRTSTANVWSRKLKN 317

Query: 289 AIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            ++E+ L L YPRLDI+V++G NHLLKSPFC+HP TGK+C
Sbjct: 318 IVQEVQLCLLYPRLDINVTRGFNHLLKSPFCIHPATGKVC 357


>gi|200197|gb|AAA39880.1| primase p49 subunit [Mus musculus]
          Length = 417

 Score =  294 bits (753), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 152/330 (46%), Positives = 213/330 (64%), Gaps = 9/330 (2%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSP 62
           +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY R  S+N+ 
Sbjct: 4   FDPAELPELLKLYYRRLFPYAQYYRWLNYGGVTKNYFQHREFSFTLKDDIYIRIQSFNNQ 63

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           +EL+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR CCS
Sbjct: 64  SELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCS 123

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    RS
Sbjct: 124 SADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRS 183

Query: 181 CLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKV 238
            + EY+S++     VKK     + +HP ++++  II+  FE+  L  Q++L  KE   K+
Sbjct: 184 GIVEYLSLVKGGQDVKKKVHLNEKVHPFVRKSINIIKKYFEEYALVGQDILENKENWDKI 243

Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELA 298
           L LV    I  E+++ + +       ++W+ L  +    Q   +D+   +   E++L+  
Sbjct: 244 LALVPET-IHDELQRGFQKFHSSP--QRWEHLRKVANSSQNMKNDKCGPWLEWEVMLQYC 300

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +PRLD++VSKGVNHLLKSPF VHPKTG+I 
Sbjct: 301 FPRLDVNVSKGVNHLLKSPFSVHPKTGRIS 330


>gi|326427822|gb|EGD73392.1| DNA primase [Salpingoeca sp. ATCC 50818]
          Length = 369

 Score =  294 bits (753), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 152/324 (46%), Positives = 205/324 (63%), Gaps = 16/324 (4%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNLDN-FRKREFSFTLNGDIYARYISYNSPNELKKDLI 70
           ++L  YY R+FPY  Y RWL YG+ D  F+ REFSFTL  D+Y RY S+    +LK+ + 
Sbjct: 8   QLLQQYYARLFPYTKYFRWLSYGSTDKVFQNREFSFTLKDDVYVRYQSFTDLADLKQAIQ 67

Query: 71  KRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKC 128
            +CP KID+GA+Y   PKDH  ++ S F P  KELVFDIDMTDYD++R CCSGA IC KC
Sbjct: 68  AKCPYKIDIGAVYTTKPKDHKKVKASEFYPVQKELVFDIDMTDYDEIRTCCSGAAICHKC 127

Query: 129 WRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSV 188
           W +M+ A K+LD ALREDF FQ LLWV+SGRRGIHCWVCDE A  L   GR  +AEY+ +
Sbjct: 128 WPFMTAALKVLDKALREDFGFQHLLWVYSGRRGIHCWVCDERARMLTQEGRGAVAEYLQL 187

Query: 189 LTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLL---EEQELLSTKERQTKVLGLVSNG 245
           ++ +      +     +P   RA  I++  F   +   + Q+LL+  E++  +LG+  + 
Sbjct: 188 VSGSDQMACKVHVPPSYPAATRAFDILKPYFHSTVLSADGQDLLNHAEQRRALLGVFEDS 247

Query: 246 DIRAEIEKEWTRIGPGQDVE-KWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDI 304
            +  ++E  WT  G  +  E KW  +       +      K +  ++ I L+  YPRLDI
Sbjct: 248 SMTDDLESRWT--GDTRSSEHKWADV-------EKAAKAAKKRSKLQAITLQHTYPRLDI 298

Query: 305 HVSKGVNHLLKSPFCVHPKTGKIC 328
           HVSKG+NHLLKSPF VHPKTG++C
Sbjct: 299 HVSKGLNHLLKSPFVVHPKTGRVC 322


>gi|296212055|ref|XP_002752664.1| PREDICTED: DNA primase small subunit [Callithrix jacchus]
          Length = 420

 Score =  294 bits (752), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 155/332 (46%), Positives = 214/332 (64%), Gaps = 10/332 (3%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   ETFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYVRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS ADIC KCW  M++A +I+D AL EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct: 122 CSSADICPKCWTLMTMAIRIIDRALEEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           RS + EY+S++     VKK     + +HP ++++  II   FE+  L  Q++L  KE   
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIINKYFEEYALVNQDILENKESWD 241

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILL 295
           K+L LV    IR E+++ + +      +++W+ L       Q    + K    +E EI+L
Sbjct: 242 KILALVPET-IRDELQQSFQK--SHSSLQRWEHLKKAASKCQNNIKNDKCGPWLEWEIML 298

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           +  +PRLDI+VSKG+NHLLKSPF VHPKTG+I
Sbjct: 299 QYCFPRLDINVSKGINHLLKSPFSVHPKTGRI 330


>gi|348580912|ref|XP_003476222.1| PREDICTED: DNA primase small subunit isoform 1 [Cavia porcellus]
          Length = 432

 Score =  293 bits (751), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 157/344 (45%), Positives = 218/344 (63%), Gaps = 22/344 (6%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   ESFDPAELPELLKLYYRRLFPYPQYYRWLNYGGVVKNYFQNREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNAVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS ADIC KCW  M++A  I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct: 122 CSSADICSKCWTLMTMAIHIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           RS + EY+S++     VKK     + +HP ++R+  II+  FE+  L +Q++L  KE   
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFVRRSIHIIKKYFEEYALVDQDILENKESWD 241

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRL-------------VAIIKHHQAKNSD 283
           K+L LV  G I  E++  + +      V++W+ L             + I K+     +D
Sbjct: 242 KILALVP-GTIHEELQTCFQK--SHNSVQRWEHLKRVINTCQVYSIEICIFKYANNIKND 298

Query: 284 RKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           +   +   EI+L+  +PRLDI+VSKG+NHLLKSPF VHPKTG+I
Sbjct: 299 KCGPWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVHPKTGRI 342


>gi|357460529|ref|XP_003600546.1| DNA primase small subunit [Medicago truncatula]
 gi|355489594|gb|AES70797.1| DNA primase small subunit [Medicago truncatula]
          Length = 433

 Score =  293 bits (750), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 155/351 (44%), Positives = 221/351 (62%), Gaps = 25/351 (7%)

Query: 1   MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYG--------NLDNFRKREFSFTLNGDI 52
           M  + D E  +  L  YY ++FPY    +W+ YG        +   F +REFSFTLNGD 
Sbjct: 1   MIPQQDSEFDSNCLKPYYGKLFPYADIFKWMSYGHDGKHPGCDQSYFGRREFSFTLNGDF 60

Query: 53  YARYISYNSPNELKKDLIKRCPQKIDLGAIYDICP-KDHL----QHSVFTPKMKELVFDI 107
           Y R+ SYN+  EL+K + ++CP KID+G +Y + P K H      ++VFTP  +EL+FDI
Sbjct: 61  YLRFQSYNNALELEKAIKEKCPLKIDIGPVYTVDPAKRHAYAQSDNNVFTPVERELIFDI 120

Query: 108 DMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVC 167
           DMTDYDDVR CC GAD+C  CW  M+IA K++DT+LR+DF F+ +LWV+SGRRG+HCWVC
Sbjct: 121 DMTDYDDVRYCCKGADVCLDCWPLMTIAIKVIDTSLRDDFGFKHILWVYSGRRGVHCWVC 180

Query: 168 DEAALALDGRGRSCLAEYMSVLTANPV--KKVFLTGDVLHPHLKRAKL-IIEDQFEK-LL 223
           D  A  L    R+ +A+Y  V   N    KKV L G  LHP L  +   +++D FEK LL
Sbjct: 181 DGKARRLTNEQRASVADYFRVYKGNENSHKKVSLMGAALHPFLATSYTNVLKDYFEKVLL 240

Query: 224 EEQELLSTKERQTKVLGLVSNGDIRAEIEKEWT---RIGPGQ---DVEKWDRLVAIIKHH 277
             Q LL+T+ER  K+L ++ +  I +E+  +W    R    +   ++ +W++   +++  
Sbjct: 241 TRQNLLATEERYEKILSMIPDESIASELRGKWQDSRRSSSAKEDINIVRWEQCKQLLQ-- 298

Query: 278 QAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
             K+  + L+  +EEI+    YPRLD+ VSK +NHLLK+PFCVHPKTG++C
Sbjct: 299 SGKHKSQGLRRCVEEIVFCYTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVC 349


>gi|440899485|gb|ELR50782.1| DNA primase small subunit, partial [Bos grunniens mutus]
          Length = 414

 Score =  293 bits (750), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 154/333 (46%), Positives = 215/333 (64%), Gaps = 10/333 (3%)

Query: 3   DKYDPESLTEMLPFYYKRIFP-YGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISY 59
           + +DP  L E+L  YY+     YG Y RWL YG +  + F+ REFSFTL  DIY RY S+
Sbjct: 2   EAFDPAELPELLKLYYRXXXXXYGQYYRWLNYGGVVKNYFQHREFSFTLKDDIYIRYQSF 61

Query: 60  NSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRN 117
           N+ ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR 
Sbjct: 62  NNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRR 121

Query: 118 CCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGR 177
           CCS ADIC KCW  M++A  I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L   
Sbjct: 122 CCSSADICSKCWTLMTMAIHIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSA 181

Query: 178 GRSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQ 235
            RS + EY+S++     VKK     + +HP ++++  II+  FE+  L +Q++L  K+  
Sbjct: 182 VRSGIVEYLSLVKGGQDVKKKVHLSEKIHPFVRKSINIIKKYFEQYALVDQDILENKQSW 241

Query: 236 TKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EIL 294
            K+L LV    +R E+++ + R       ++W+ L   I  +Q  N + K    +E EI+
Sbjct: 242 DKILALVPENILRDELQQGFQR--QSNSPQRWETLKNTINKYQKNNKNDKCGLWLEWEIM 299

Query: 295 LELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           L+  +PRLDI+VSKG+NHLLKSPF VHPKTG+I
Sbjct: 300 LQYCFPRLDINVSKGINHLLKSPFSVHPKTGRI 332


>gi|355564374|gb|EHH20874.1| DNA primase small subunit [Macaca mulatta]
 gi|383419791|gb|AFH33109.1| DNA primase small subunit [Macaca mulatta]
          Length = 420

 Score =  293 bits (749), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 154/332 (46%), Positives = 216/332 (65%), Gaps = 10/332 (3%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   ETFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct: 122 CSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           RS + EY+S++     VKK     + +HP ++++  II+  FE+  L  Q++L  KE   
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILKNKESWD 241

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILL 295
           K+L LV    I  E+++ + +      +++W+ L  +    Q    + K    +E EI+L
Sbjct: 242 KILALVPEI-IHDELQQGFQK--SHNSLQRWEHLKKVASRCQNNIKNDKYGPWLEWEIML 298

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           +  +PRLDI+VSKG+NHLLKSPF VHPKTG+I
Sbjct: 299 QYCFPRLDINVSKGINHLLKSPFSVHPKTGRI 330


>gi|301761029|ref|XP_002916042.1| PREDICTED: DNA primase small subunit-like [Ailuropoda melanoleuca]
          Length = 419

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 153/331 (46%), Positives = 216/331 (65%), Gaps = 9/331 (2%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   ETFDPAELPELLKLYYRRLFPYAQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRGIHCWVCDE+   L    
Sbjct: 122 CSSADICSKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGIHCWVCDESVRKLSSAV 181

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           RS + EY+S++     VKK     + +HP ++ +  II+  FE+  L +Q++L  KE   
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFVRSSINIIKKYFEEYALVDQDILENKESWD 241

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLE 296
           K+L LV +  I  ++++ + +      +++W+ L   I       +D+   +   EI+L+
Sbjct: 242 KILALVPSP-IHEKLQQNFQKCHSS--LQRWEYLKQGINCQDNTKNDKCGPWLEWEIMLQ 298

Query: 297 LAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
             +PRLDI+VSKG+NHLLKSPF VHPKTG+I
Sbjct: 299 YCFPRLDINVSKGINHLLKSPFSVHPKTGRI 329


>gi|189054729|dbj|BAG37381.1| unnamed protein product [Homo sapiens]
          Length = 420

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 153/333 (45%), Positives = 216/333 (64%), Gaps = 10/333 (3%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   ETFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
            S ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct: 122 RSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           RS + EY+S++     VKK     + +HP ++++  II+  FE+  L  Q++L  KE   
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWD 241

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILL 295
           K+L LV    I  E+++ + +      +++W+ L  +   +Q    + K    +E EI+L
Sbjct: 242 KILALVPET-IHDELQQSFQK--SHNSLQRWEHLKKVASRYQNNIKNDKYGPWLEWEIML 298

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +  +PRLDI+VSKG+NHLLKSPF VHPKTG+I 
Sbjct: 299 QYCFPRLDINVSKGINHLLKSPFSVHPKTGRIS 331


>gi|350584151|ref|XP_003355516.2| PREDICTED: DNA primase small subunit-like [Sus scrofa]
          Length = 511

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 154/332 (46%), Positives = 215/332 (64%), Gaps = 10/332 (3%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   ETFDPTELPELLKLYYRRLFPYAQYYRWLNYGGVVKNYFQHREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + +EL+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQSELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS ADIC KCW  M++A  I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct: 122 CSSADICSKCWTLMTMAIHIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQT 236
           RS + EY+S++     VKK     + +HP ++++  II+  FE+  L  Q +L  KE   
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLNEKIHPFVRKSINIIKKYFEEYALVGQNILENKESWD 241

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILL 295
           K+L LV    +  E+++ + +      +++W+ L      +Q  + + K    +E EI+L
Sbjct: 242 KILALVPE-TMHDELQQSFQK--HQNSLQRWEYLKKAASRYQNNSKNDKCGPWLEWEIML 298

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           +  +PRLDI+VSKG+NHLLKSPF VHPKTG+I
Sbjct: 299 QYCFPRLDINVSKGINHLLKSPFSVHPKTGRI 330


>gi|422295194|gb|EKU22493.1| DNA primase small subunit [Nannochloropsis gaditana CCMP526]
          Length = 462

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 155/354 (43%), Positives = 218/354 (61%), Gaps = 31/354 (8%)

Query: 6   DPESLTEMLPFYYKRIFPYGPYLRWLFYGN----------LDNFRKREFSFTLNGDIYAR 55
           D E   E+L F+Y R+FPY P  +WL YGN           D F  REFSFT+N DIY R
Sbjct: 20  DQEFSPELLRFFYNRLFPYQPMFKWLSYGNDPDNDAAHIVRDYFACREFSFTINDDIYIR 79

Query: 56  YISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYD 113
           Y S+   +E++  + K+ P KID+GA++ + PKDH  ++   F P  +EL+FDIDMTDYD
Sbjct: 80  YQSFRDASEMESAIQKKQPHKIDIGAVFTLPPKDHHTVKAEAFKPVERELIFDIDMTDYD 139

Query: 114 DVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALA 173
           D+R+CC+GA IC KCW +M++A K++DTALREDF F+ +LWV+SGRRG+HCWVCD  A A
Sbjct: 140 DIRSCCTGAKICPKCWVFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARA 199

Query: 174 LDGRGRSCLAEYMSVLTANPVKKVFLTGDV--LHPHLKRAKLIIEDQFEK-LLEE--QEL 228
           L   GRS + EY+S+   N   K    G    LHP   RA  I+E  FE  +L E  Q +
Sbjct: 200 LSNDGRSAVVEYLSLPRGNEKSKGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEAGQGV 259

Query: 229 LSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQD--VEKWDRLVAIIKHHQAKNSDRKL 286
           L ++     +L  + + D+   + +E  R+   QD  +E   ++ A    H + N+ R+ 
Sbjct: 260 LDSENSWDTLLDTLPDEDLANRLRREMRRLTNAQDRWLEIKSQVRAASSAHASGNARRQS 319

Query: 287 K--------YAIE----EILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +        +A++    E++ +  YPRLD++VSKG NHLLKSPF VHPKTG++C
Sbjct: 320 RGGRAGNGLFALDLWKYEVVFQYCYPRLDVNVSKGTNHLLKSPFAVHPKTGRVC 373


>gi|226492225|ref|NP_001143441.1| uncharacterized protein LOC100276095 [Zea mays]
 gi|195620552|gb|ACG32106.1| hypothetical protein [Zea mays]
          Length = 453

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 150/346 (43%), Positives = 217/346 (62%), Gaps = 27/346 (7%)

Query: 7   PESL-TEMLPFYYKRIFPYGPYLRWLFYGN--------LDNFRKREFSFTLNGDIYARYI 57
           PE   T+ L  YY ++FPYG + +WL YGN             +REFSFTL  DIY R+ 
Sbjct: 25  PEGFNTDYLRVYYGKLFPYGDFFKWLCYGNDGKHPGCDQSYVGRREFSFTLENDIYLRFQ 84

Query: 58  SYNSPNELKKDLIKRCPQKIDLGAIYDICP-KDHL----QHSVFTPKMKELVFDIDMTDY 112
           S+++  EL+  + ++CP KID+G +Y + P K H      ++VF P  +EL+FDID++DY
Sbjct: 85  SFDTATELESSIKEKCPFKIDIGPVYSVDPSKRHAYAQSGNNVFVPVERELIFDIDISDY 144

Query: 113 DDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAAL 172
           DDVR CCSGAD+C  CW  M+IA KILDT+LR+DF F  +LWV+SGRRG+HCWVCD  A 
Sbjct: 145 DDVRYCCSGADVCRDCWPLMTIAIKILDTSLRDDFGFSHILWVYSGRRGVHCWVCDSRAR 204

Query: 173 ALDGRGRSCLAEYMSVLTA--NPVKKVFLTGDVLHPHLKRAKLIIEDQF--EKLLEEQEL 228
            L    R+ +A+Y  V     N +KKV L G VLHP L R+ + +   F  ++LL  Q+L
Sbjct: 205 KLSNEQRAAIADYFRVYKGGENALKKVSLAGPVLHPFLARSYMDVLKTFFEDRLLLNQQL 264

Query: 229 LSTKERQTKVLGLVSNGDIRAEIEKEW-----TRIGPGQ-DVEKWDRLVAIIKHHQAKNS 282
            +++ER  K+L L+ +  + +E+  +W     + I     +  +W++L   +   Q+   
Sbjct: 265 FASEERCRKILDLIPDESVASEVHDKWQGNRRSSISKEDVNATRWEQLKMTL---QSGKK 321

Query: 283 DRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            + L+  +EEI+    YPRLD+ VSK +NHLLK+PFC+HPKTG++C
Sbjct: 322 AQGLRRCVEEIVFSYTYPRLDMEVSKHMNHLLKAPFCIHPKTGRVC 367


>gi|189241359|ref|XP_971054.2| PREDICTED: similar to DNA primase [Tribolium castaneum]
 gi|270013128|gb|EFA09576.1| hypothetical protein TcasGA2_TC011690 [Tribolium castaneum]
          Length = 418

 Score =  290 bits (741), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 157/334 (47%), Positives = 212/334 (63%), Gaps = 17/334 (5%)

Query: 2   ADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNS 61
           A  Y+ +SL ++LP YYKR+FP+    +WL YG+ +   +RE SFTL GDIY RY S+ +
Sbjct: 3   ASLYNEDSLPDLLPIYYKRLFPHTALHKWLCYGDPNVSNRREISFTLVGDIYLRYQSFEN 62

Query: 62  PNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVF-----TPKMKELVFDIDMTDYDDVR 116
             +  + L KR P KID+GAIY    K  L+ S       TP  +E+VFDIDMTDYDDVR
Sbjct: 63  AEDFAQALHKRFPVKIDIGAIY----KQRLESSGSYSSSKTPVEREIVFDIDMTDYDDVR 118

Query: 117 NCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDG 176
            CC+GA +C KCW++M IACKILD ALREDF F+ +LWVFSGRRGIHCWV D+ A  LD 
Sbjct: 119 TCCTGAGVCPKCWKFMVIACKILDGALREDFGFENILWVFSGRRGIHCWVADKKARILDD 178

Query: 177 RGRSCLAEYMSVLTAN-PVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKER 234
             RS +AEY+++L     V+KV      +H   +RA  +I++ FEK +L EQ++L T ER
Sbjct: 179 NQRSAIAEYLTLLRGGLVVRKVKFFN--MHAATERALKVIDEYFEKSILVEQDILGTYER 236

Query: 235 QTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNS-DRKLKYAIEEI 293
               LG +  G          T++     VE+W   V   +  Q +    +  +Y +EE+
Sbjct: 237 LDAFLGNIDEG-FSPLFRDAMTKVQTS--VERWKAFVNTFQTLQREQKIPKHYRYMVEEM 293

Query: 294 LLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
               AYPRLDI+V+K +NHLLK+PFC+HPK+GK+
Sbjct: 294 KFYYAYPRLDINVTKSLNHLLKAPFCIHPKSGKV 327


>gi|156537910|ref|XP_001608140.1| PREDICTED: DNA primase small subunit-like [Nasonia vitripennis]
          Length = 404

 Score =  290 bits (741), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 145/325 (44%), Positives = 208/325 (64%), Gaps = 13/325 (4%)

Query: 10  LTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           L ++LP Y+ R+FP+     WL YG  + F  REF F   GD Y RY +Y+S N+LK D+
Sbjct: 6   LEDVLPIYFSRLFPFEDLYEWLKYGEANTFACREFVFNFEGDRYLRYQAYSSLNDLKNDV 65

Query: 70  IKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
            ++ P KID+GA+Y+  P ++++ + F P  KEL+FD+D+TDYD++R CCSG ++C KCW
Sbjct: 66  KRKKPYKIDIGAVYNNPPSNYMREAEFYPVQKELIFDLDLTDYDEIRTCCSGTNVCSKCW 125

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           ++M IA KILDT+LREDF F  +LW FSGRRGIHCWVCD++A  L   GR  +A Y+ ++
Sbjct: 126 KFMIIAIKILDTSLREDFGFDHILWTFSGRRGIHCWVCDKSARFLKKYGRLAVANYLQLV 185

Query: 190 TANPVKKVFL-TGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLVSNG-- 245
           T    KK  +   + +H  ++RA  IIE  F K+ + EQ +L T+E   K LG++     
Sbjct: 186 TGGEYKKKKVEINNAIHHSVQRALKIIEPLFVKICVIEQNMLGTQEGIDKFLGIIDEALR 245

Query: 246 -DIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD--RKLKYAIEEILLELAYPRL 302
            D++  ++K  T         +W   V   ++      D   K  + IEEI+++ AYPRL
Sbjct: 246 TDVQHLLDKYQT------SASRWQAFVEYFRNQIESKVDMWSKTPFLIEEIMIQYAYPRL 299

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKI 327
           DI+VS G++HLLKSPF VHP+TGKI
Sbjct: 300 DINVSLGISHLLKSPFSVHPRTGKI 324


>gi|156373737|ref|XP_001629467.1| predicted protein [Nematostella vectensis]
 gi|156216468|gb|EDO37404.1| predicted protein [Nematostella vectensis]
          Length = 415

 Score =  290 bits (741), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 150/326 (46%), Positives = 212/326 (65%), Gaps = 21/326 (6%)

Query: 10  LTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELKK 67
           L E+L  YYK +FPY  Y +WL YG++    F  REFSFTL  D+Y RY S+ S  E++K
Sbjct: 19  LPELLQQYYKWLFPYKLYHQWLSYGDVPKTYFPNREFSFTLKDDVYLRYQSFASQEEMEK 78

Query: 68  DLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
           ++ KR P KID+GA++   PKDH  ++ + F    KELVFDIDMTDYD++R CC GA+IC
Sbjct: 79  EIQKRNPHKIDIGAVFSHKPKDHKMVKAASFQALEKELVFDIDMTDYDEIRTCCKGAEIC 138

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
            KCW++M IA K+LD AL+EDF F+  LWV+SGRRG+HCWVCDE A  L   GRS +AEY
Sbjct: 139 LKCWKFMVIAIKVLDLALKEDFGFKHRLWVYSGRRGVHCWVCDETARKLSQSGRSAVAEY 198

Query: 186 MSVLTA--NPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLV 242
           ++++    N  KKV +  +  HP +KR+  +++  F  + L+ QE+LS+KE    +L L+
Sbjct: 199 LTIIKGGENQAKKVNIR-EPYHPFIKRSLSLVKKYFNDIVLDGQEILSSKETWDPLLALL 257

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRL 302
           +      +              E+W+ L  +      K    ++   I+EI+L+  YPRL
Sbjct: 258 NKSWSSCKKSS----------SERWEELTVMCTSFFQKMQSMEV---IDEIMLQYTYPRL 304

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           D++V+KG+NHLLKSPFC+HPKTG++C
Sbjct: 305 DVNVTKGLNHLLKSPFCIHPKTGRVC 330


>gi|194212268|ref|XP_001917724.1| PREDICTED: DNA primase small subunit [Equus caballus]
          Length = 420

 Score =  290 bits (741), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 153/333 (45%), Positives = 213/333 (63%), Gaps = 16/333 (4%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSP 62
           +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N+ 
Sbjct: 4   FDPAELPELLKLYYRRLFPYAQYYRWLNYGGVVKNYFQHREFSFTLKDDIYIRYQSFNNQ 63

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR CCS
Sbjct: 64  SDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCS 123

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    RS
Sbjct: 124 SADICSKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRS 183

Query: 181 CLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKV 238
            + EY+S++     VKK     + +HP ++++  II+  FE   L  Q++L  KE   K+
Sbjct: 184 GIVEYLSLVKGGQDVKKKVHLSENVHPFVRKSISIIKKYFEGYALVGQDILENKESWDKI 243

Query: 239 LGLVS---NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EIL 294
           L LV    + D++   +K  + +      ++W+ L        +   + K    +E EI+
Sbjct: 244 LALVPETMHNDLQQNFQKHHSSL------QRWEYLKKAASQCPSNIKNEKCGPWLEWEIM 297

Query: 295 LELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           L+  +PRLDI+VSKG+NHLLKSPF VHPKTG+I
Sbjct: 298 LQYCFPRLDINVSKGINHLLKSPFSVHPKTGRI 330


>gi|343887397|ref|NP_001230598.1| DNA primase small subunit [Sus scrofa]
          Length = 419

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 152/333 (45%), Positives = 213/333 (63%), Gaps = 10/333 (3%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPY  Y RWL YG +  +  + REFSFTL  DIY RY S+N
Sbjct: 2   ETFDPTELPELLKLYYRRLFPYAQYYRWLNYGGVVKNYLQHREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + +EL+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQSELEKEVQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS ADIC KCW  M++A  I+D AL+EDF F+   WV+SGRRG+HCWVCDE+   L    
Sbjct: 122 CSSADICSKCWTLMTMAIHIIDRALKEDFGFKHRPWVYSGRRGVHCWVCDESVRKLSSAV 181

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           RS + EY+S++     VKK     + +HP ++++  II+  FE+  L  Q +L  KE   
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLNEKIHPFVRKSINIIKKYFEEYALVGQNILENKESWD 241

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILL 295
           K+L LV    +  E+++ + +      +++W+ L      +Q  + + K    +E EI+L
Sbjct: 242 KILALVPET-MHDELQQSFQK--HQNSLQRWEYLKKAASRYQNNSKNDKCGPWLEWEIML 298

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +  +PRLDI+VSKG+NHLLKSPF VHPKTG+I 
Sbjct: 299 QYCFPRLDINVSKGINHLLKSPFSVHPKTGRIS 331


>gi|357142240|ref|XP_003572504.1| PREDICTED: DNA primase small subunit-like [Brachypodium distachyon]
          Length = 450

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 154/349 (44%), Positives = 213/349 (61%), Gaps = 32/349 (9%)

Query: 7   PESLT-EMLPFYYKRIFPYGPYLRWLFYGN--------LDNFRKREFSFTLNGDIYARYI 57
           PE    + L  YY ++FPYG + +WL YGN             +RE SFTL  DIY R+ 
Sbjct: 23  PEGFNADYLRIYYGKLFPYGDFFKWLSYGNDAKHPGCDQSYIGRRELSFTLENDIYLRFQ 82

Query: 58  SYNSPNELKKDLIKRCPQKIDLGAIYDICP-KDHL----QHSVFTPKMKELVFDIDMTDY 112
           S++S  EL+  + ++CP KID+G +Y + P K H      ++VF P  +EL+FDID++DY
Sbjct: 83  SFDSAAELESSIKEKCPFKIDIGPVYSVDPAKRHAYAQSGNNVFAPVERELIFDIDISDY 142

Query: 113 DDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAAL 172
           DDVR CCSGAD C  CW  M+I  KILDT+LR DF F  +LWV+SGRRG+HCWVCD  A 
Sbjct: 143 DDVRYCCSGADTCVDCWPLMTIVIKILDTSLRGDFGFNHILWVYSGRRGVHCWVCDSRAR 202

Query: 173 ALDGRGRSCLAEYMSVLTA--NPVKKVFLTGDVLHPHLKRA-----KLIIEDQFEKLLEE 225
            L    RS +A+Y  V     N  KKV LTG VLHP L R+     K   ED   KLL  
Sbjct: 203 KLSNEQRSAIADYFRVYKGGENTSKKVSLTGPVLHPFLARSYTDVLKCFFED---KLLHS 259

Query: 226 QELLSTKERQTKVLGLVSNGDIRAEIEKEW-----TRIGPGQ-DVEKWDRLVAIIKHHQA 279
           Q+L S++ER  K+L L+ + ++ +E+  +W     + I     +  +W++L   ++    
Sbjct: 260 QQLFSSEERCNKILELIPDENVASELHDKWQGNRRSSISKEDVNAARWEQLKTTLQ--SG 317

Query: 280 KNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           K+  + L+  +EEI+    YPRLD+ VSK +NHLLK+PFC+HPKTG++C
Sbjct: 318 KHKAQGLRRCVEEIVFSYTYPRLDMEVSKHMNHLLKAPFCIHPKTGRVC 366


>gi|22037275|gb|AAM89973.1|AF403474_1 DNA primase catalytic subunit p48 [Moneuplotes crassus]
          Length = 441

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 145/336 (43%), Positives = 205/336 (61%), Gaps = 19/336 (5%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFY-----------GNLDNFRKREFSFTLNGDIYARYISYN 60
           E+L  Y++ +FP      WL Y              D F +REFSFTL   IY RY  + 
Sbjct: 18  ELLKKYFELLFPSKGMYDWLTYYQPEMKDTEGKPKSDYFYRREFSFTLEDGIYVRYNCFK 77

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           +  E K+ LI++ P+KID+GA++++ PK+H  ++   F P+ KELVFDIDMTDYDDVR C
Sbjct: 78  NEEEFKQTLIEKSPEKIDIGAVFNMPPKNHSSVESRAFIPQEKELVFDIDMTDYDDVRTC 137

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           C GA++C KCWR+MSIA KI+D A+REDF ++ LLWVFSGRRG+HCWVCD +   L    
Sbjct: 138 CEGANVCLKCWRFMSIATKIIDKAMREDFGYKHLLWVFSGRRGVHCWVCDPSTRKLTNEA 197

Query: 179 RSCLAEYMSVLTANPVKKVFLTGD-VLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQT 236
           RS +A Y++V   N +       D V HP + RAK II+++F + ++  Q +LS +E++ 
Sbjct: 198 RSAIANYLTVHVGNEMGSTTAKIDFVAHPAISRAKDIIKEEFTDIMMRGQNILSKEEQRK 257

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEK----WDRLVAIIKHHQAKNSDRKLKYAIEE 292
           K++ ++   ++R  ++  W R    +D E     W+    I      K         +  
Sbjct: 258 KLIEMLPEEEVRNHLKTNWDRYTDYEDQENSVKLWNIFTEIAGDKGGKLRKSYRTDYVTS 317

Query: 293 ILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            ++   YPR+D +VSKG+NHLLKSPFCVHPKTGKIC
Sbjct: 318 AMITFLYPRIDANVSKGINHLLKSPFCVHPKTGKIC 353


>gi|388517081|gb|AFK46602.1| unknown [Medicago truncatula]
          Length = 433

 Score =  287 bits (734), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 155/355 (43%), Positives = 217/355 (61%), Gaps = 33/355 (9%)

Query: 1   MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYG--------NLDNFRKREFSFTLNGDI 52
           M  + D E  +  L  YY ++FPY    +W+ YG        +   F +REFSFTLNGD 
Sbjct: 1   MIPQQDSEFDSNCLKPYYGKLFPYADIFKWMSYGHDGKHPGCDQSYFGRREFSFTLNGDF 60

Query: 53  YARYISYNSPNELKKDLIKRCPQKIDLGAIYDICP-KDHL----QHSVFTPKMKELVFDI 107
           Y R+ SYN+  EL+K + ++CP KID+G ++ + P K H      ++VFTP  +EL+FDI
Sbjct: 61  YLRFQSYNNALELEKAIKEKCPLKIDIGPVHTVDPAKRHAYAQSDNNVFTPVERELIFDI 120

Query: 108 DMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVC 167
           DMTDYDDVR CC GAD+C  CW  M+I  K++DT+LR+DF F+ +LWV+SGRRG+HCWVC
Sbjct: 121 DMTDYDDVRYCCKGADVCLDCWPLMTIVIKVIDTSLRDDFGFKHILWVYSGRRGVHCWVC 180

Query: 168 DEAALALDGRGRSCLAEYMSVLTA--NPVKKVFLTGDVLHPHLKRAKL-IIEDQFEK-LL 223
           D  A  L    R+ +A+Y  V     N  KKV L G  LHP L  +   +++D FEK LL
Sbjct: 181 DGKARRLTNEQRASVADYFRVYKGNENSHKKVSLMGAALHPFLATSYTNVLKDYFEKVLL 240

Query: 224 EEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRL---VAIIKHHQ-- 278
             Q LL+T+ER  K+L ++ +  I +E+  +W      QD  +       + I++  Q  
Sbjct: 241 TRQNLLATEERYEKILSMIPDESIASELRGKW------QDSRRSSSAKEDINIVRREQCK 294

Query: 279 -----AKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
                 K+  + L+  +EEI+    YPRLD+ VSK +NHLLK+PFCVHPKTG++C
Sbjct: 295 QLLQSGKHKSQGLRRCVEEIVFCYTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVC 349


>gi|403269431|ref|XP_003926744.1| PREDICTED: DNA primase small subunit [Saimiri boliviensis
           boliviensis]
          Length = 366

 Score =  287 bits (734), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 152/329 (46%), Positives = 211/329 (64%), Gaps = 10/329 (3%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   ETFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct: 122 CSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           RS + EY+S++     VKK     + +HP ++++  II   FE+  L  Q++L  KE   
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIINKYFEEYALVNQDILENKESWD 241

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILL 295
           K+L LV    I  E+++ + +      +++W+ L       Q    + K    +E EI+L
Sbjct: 242 KILALVPET-IHDELQQNFQK--SHSSLQRWEHLKKAASKCQNNIKNDKCGPWLEWEIML 298

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKT 324
           +  +PRLDI+VSKG+NHLLKSPF VHPKT
Sbjct: 299 QYCFPRLDINVSKGINHLLKSPFSVHPKT 327


>gi|119617365|gb|EAW96959.1| hCG2016482, isoform CRA_a [Homo sapiens]
          Length = 428

 Score =  287 bits (734), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 153/341 (44%), Positives = 216/341 (63%), Gaps = 18/341 (5%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   ETFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALR--------EDFDFQLLLWVFSGRRGIHCWVCDEA 170
           CS ADIC KCW  M++A +I+D AL+         DF F+  LWV+SGRRG+HCWVCDE+
Sbjct: 122 CSSADICPKCWTLMTMAIRIIDRALKGKYQQFLNGDFGFKHRLWVYSGRRGVHCWVCDES 181

Query: 171 ALALDGRGRSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQEL 228
              L    RS + EY+S++     VKK     + +HP ++++  II+  FE+  L  Q++
Sbjct: 182 VRKLSSAVRSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDI 241

Query: 229 LSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKY 288
           L  KE   K+L LV    I  E+++ + +      +++W+ L  +   +Q    + K   
Sbjct: 242 LENKESWDKILALVPET-IHDELQQSFQK--SHNSLQRWEHLKKVASRYQNNIKNDKYGP 298

Query: 289 AIE-EILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            +E EI+L+  +PRLDI+VSKG+NHLLKSPF VHPKTG+I 
Sbjct: 299 WLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVHPKTGRIS 339


>gi|297742324|emb|CBI34473.3| unnamed protein product [Vitis vinifera]
          Length = 447

 Score =  287 bits (734), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 149/338 (44%), Positives = 212/338 (62%), Gaps = 25/338 (7%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGN--------LDNFRKREFSFTLNGDIYARYISYNSPNEL 65
           L  YY ++FP+    +W+ YGN             +REFSFTL  DIY R+ S+NS +E+
Sbjct: 28  LKVYYGKLFPHSDLFKWMSYGNDGKHPACDQSYIGRREFSFTLADDIYLRFQSFNSVHEM 87

Query: 66  KKDLIKRCPQKIDLGAIYDICPKDHLQHS-----VFTPKMKELVFDIDMTDYDDVRNCCS 120
           +  + ++CP KID+G +Y + P     ++     VFTP  +ELVFDID+TDYDDVR CCS
Sbjct: 88  ENSIKEKCPFKIDIGPVYSVDPTKRHAYAQSGDNVFTPVERELVFDIDITDYDDVRYCCS 147

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           GAD+C  CW  M++A K++DTALR+DF F  +LWV+SGRRG+HCWVCD  A  L    R+
Sbjct: 148 GADVCLDCWPLMTVAIKVIDTALRDDFGFNHILWVYSGRRGVHCWVCDGRARRLSNEQRA 207

Query: 181 CLAEYMSVLTA--NPVKKVFLTGDVLHPHLKRAKL-IIEDQF-EKLLEEQELLSTKERQT 236
            +A+Y  V     N  KKV L G  LHP L R+   +++D F EKLL  Q+L ST+ER  
Sbjct: 208 AIADYFRVYKGNENSQKKVSLVGPALHPFLARSYTEVLKDFFEEKLLPGQKLFSTEERYE 267

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPG----QDVE--KWDRLVAIIKHHQAKNSDRKLKYAI 290
           K+L ++ +  I +E+  +W          +D+   +W++L  +++    K   + L+  +
Sbjct: 268 KILKIIPDESITSELRGKWQENRRSSISKEDINAIRWEQLKHMLQ--SGKQKAQGLRRCV 325

Query: 291 EEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           EEI+    YPRLD+ VSK +NHLLK+PFCVHPKTG++C
Sbjct: 326 EEIVFSYTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVC 363


>gi|359473913|ref|XP_002270595.2| PREDICTED: DNA primase small subunit-like [Vitis vinifera]
          Length = 457

 Score =  287 bits (734), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 149/338 (44%), Positives = 212/338 (62%), Gaps = 25/338 (7%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGN--------LDNFRKREFSFTLNGDIYARYISYNSPNEL 65
           L  YY ++FP+    +W+ YGN             +REFSFTL  DIY R+ S+NS +E+
Sbjct: 38  LKVYYGKLFPHSDLFKWMSYGNDGKHPACDQSYIGRREFSFTLADDIYLRFQSFNSVHEM 97

Query: 66  KKDLIKRCPQKIDLGAIYDICPKDHLQHS-----VFTPKMKELVFDIDMTDYDDVRNCCS 120
           +  + ++CP KID+G +Y + P     ++     VFTP  +ELVFDID+TDYDDVR CCS
Sbjct: 98  ENSIKEKCPFKIDIGPVYSVDPTKRHAYAQSGDNVFTPVERELVFDIDITDYDDVRYCCS 157

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           GAD+C  CW  M++A K++DTALR+DF F  +LWV+SGRRG+HCWVCD  A  L    R+
Sbjct: 158 GADVCLDCWPLMTVAIKVIDTALRDDFGFNHILWVYSGRRGVHCWVCDGRARRLSNEQRA 217

Query: 181 CLAEYMSVLTA--NPVKKVFLTGDVLHPHLKRAKL-IIEDQF-EKLLEEQELLSTKERQT 236
            +A+Y  V     N  KKV L G  LHP L R+   +++D F EKLL  Q+L ST+ER  
Sbjct: 218 AIADYFRVYKGNENSQKKVSLVGPALHPFLARSYTEVLKDFFEEKLLPGQKLFSTEERYE 277

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPG----QDVE--KWDRLVAIIKHHQAKNSDRKLKYAI 290
           K+L ++ +  I +E+  +W          +D+   +W++L  +++    K   + L+  +
Sbjct: 278 KILKIIPDESITSELRGKWQENRRSSISKEDINAIRWEQLKHMLQ--SGKQKAQGLRRCV 335

Query: 291 EEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           EEI+    YPRLD+ VSK +NHLLK+PFCVHPKTG++C
Sbjct: 336 EEIVFSYTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVC 373


>gi|334188113|ref|NP_199003.5| DNA primase small subunit [Arabidopsis thaliana]
 gi|332007356|gb|AED94739.1| DNA primase small subunit [Arabidopsis thaliana]
          Length = 451

 Score =  286 bits (733), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 148/338 (43%), Positives = 208/338 (61%), Gaps = 25/338 (7%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLDN--------FRKREFSFTLNGDIYARYISYNSPNEL 65
           L  YY  +FPY    +WL YG+           F +REFSFTL  D+Y RY S+ + + +
Sbjct: 31  LRIYYGNLFPYTDIHKWLSYGHDGKHPGCDEYYFGRREFSFTLENDVYLRYKSFKNASLM 90

Query: 66  KKDLIKRCPQKIDLGAIYDICPKDHLQHS-----VFTPKMKELVFDIDMTDYDDVRNCCS 120
           +  +    P KID+GA+Y + P     ++     +FTP  +ELVFDID+TDYDDVR CCS
Sbjct: 91  EAAIKSNFPYKIDIGAVYSVDPDKRHAYAQSGTNLFTPVERELVFDIDITDYDDVRYCCS 150

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           GAD+C KCW  M++A K++DT+LREDF F+ +LWVFSGRRG+HCWVCD  A  L    RS
Sbjct: 151 GADVCSKCWPLMTVAIKVIDTSLREDFGFKHILWVFSGRRGVHCWVCDAKARRLTNEQRS 210

Query: 181 CLAEYMSVLTANP--VKKVFLTGDVLHPHLKRAKL-IIEDQFE-KLLEEQELLSTKERQT 236
            +AEY  V   N    KKV L G  LHP L R+ +  I+  FE +L   Q + S+KE+  
Sbjct: 211 AVAEYFRVYKGNENNAKKVDLMGHSLHPFLARSYVDFIKSFFEGELQATQSIFSSKEKYE 270

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVE------KWDRLVAIIKHHQAKNSDRKLKYAI 290
           K+LG++++ DI+A++  +W         E      +W++L   ++    +N    L+  +
Sbjct: 271 KILGMITDEDIQADLRGKWENSARSSLSEEATSLLRWEQLKKALQ--SKRNKALSLRTCV 328

Query: 291 EEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           EEI+    YPR+D+ VSK +NHLLK+PFCVHPKTG++C
Sbjct: 329 EEIVFTFTYPRIDLEVSKQMNHLLKAPFCVHPKTGRVC 366


>gi|218196629|gb|EEC79056.1| hypothetical protein OsI_19620 [Oryza sativa Indica Group]
 gi|222631272|gb|EEE63404.1| hypothetical protein OsJ_18216 [Oryza sativa Japonica Group]
          Length = 449

 Score =  286 bits (732), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 147/341 (43%), Positives = 216/341 (63%), Gaps = 27/341 (7%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGN--------LDNFRKREFSFTLNGDIYARYISYNSP 62
            + L  YY ++FP+  + +WL YGN             +REFSFTL  DIY R+ S++S 
Sbjct: 31  ADYLRIYYGKLFPHVDFFKWLSYGNDGKHPGCDQSYVGRREFSFTLENDIYVRFQSFDSV 90

Query: 63  NELKKDLIKRCPQKIDLGAIYDICP-KDHL----QHSVFTPKMKELVFDIDMTDYDDVRN 117
            E++  + ++CP KID+G +Y + P K H      ++VF P  +EL+FDID++DYDDVR 
Sbjct: 91  AEMENSIKEKCPFKIDIGPVYSVDPAKRHAYAQSGNNVFVPVERELIFDIDISDYDDVRY 150

Query: 118 CCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGR 177
           CCSGAD+C +CW  M+IA KILD +LR+DF F  +LWV+SGRRG+HCWVCD  A  L+  
Sbjct: 151 CCSGADVCMECWPLMTIAIKILDASLRDDFGFNHILWVYSGRRGVHCWVCDSRARKLNNE 210

Query: 178 GRSCLAEYMSVLTA--NPVKKVFLTGDVLHPHLKRAKLIIEDQF--EKLLEEQELLSTKE 233
            R+ +A+Y  V     N +KKV LTG VLHP L R+   +   F  +KLL  Q+L +++E
Sbjct: 211 QRAAIADYFRVYKGGENTMKKVSLTGAVLHPFLARSYTDVLKGFFEDKLLLSQQLFASEE 270

Query: 234 RQTKVLGLVSNGDIRAEIEKEW-----TRIGPGQ-DVEKWDRLVAIIKHHQAKNSDRKLK 287
           R  K+L L+ + ++ +E+  +W     + I     +  +W++L + ++  + K     L+
Sbjct: 271 RYQKILDLIPDENVASELHDKWQGNRRSSISKEDVNATRWEQLKSTLQSGKHKG----LR 326

Query: 288 YAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
             IEEI+    YPRLD+ VSK +NHLLK+PFC+HPKTG++C
Sbjct: 327 RCIEEIVFSYTYPRLDMEVSKHMNHLLKAPFCIHPKTGRVC 367


>gi|328769149|gb|EGF79193.1| hypothetical protein BATDEDRAFT_12476 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 405

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 149/323 (46%), Positives = 202/323 (62%), Gaps = 11/323 (3%)

Query: 13  MLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELKKDLI 70
           +L  +Y+R+FP+    RWL YG + N  F  REFSFTL  + Y RY SY    +LK D++
Sbjct: 2   LLKTFYQRLFPFKEMYRWLSYGGVHNYHFTNREFSFTLLSETYLRYQSYKGFEDLKADIV 61

Query: 71  KRCPQKIDLGAIYDI--CPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKC 128
           + CP KID+GA+Y+I  C    +  SVF P  +ELVFDIDMTDYD++R CCSGA++C+KC
Sbjct: 62  RLCPAKIDIGAVYNIKPCEGKTVASSVFIPVERELVFDIDMTDYDEIRTCCSGANVCKKC 121

Query: 129 WRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSV 188
           W +M+I+ KI+  AL+EDF F+ +LWVFSGRRG+HCWV DE A  L    R  +  Y+ +
Sbjct: 122 WHFMTISIKIIHRALKEDFGFKHILWVFSGRRGVHCWVSDERARKLTVESRRAIVSYLEI 181

Query: 189 LTA--NPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLVSNG 245
           +    N  +KV L   +LHP L  +  +    FE  LL++ ++L+T ER  KVL ++S+ 
Sbjct: 182 IHGGDNMAQKVNLKATLLHPSLALSYDVCLKYFEPVLLDKMQILATPERWNKVLRIISDE 241

Query: 246 DIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIH 305
            I   +   W+        EKW++L   I   Q       LK     I+L+  YPRLD +
Sbjct: 242 SICKSLNGIWSSNPDSSCREKWNQLKRAISDDQKP----ALKVLPRNIILQYTYPRLDSN 297

Query: 306 VSKGVNHLLKSPFCVHPKTGKIC 328
           VS G+NHLLKSPFCVHPKTG IC
Sbjct: 298 VSIGLNHLLKSPFCVHPKTGFIC 320


>gi|403370832|gb|EJY85282.1| DNA primase [Oxytricha trifallax]
          Length = 427

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 144/337 (42%), Positives = 204/337 (60%), Gaps = 26/337 (7%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNL----------------DNFRKREFSFTLNGDIYA 54
            E+L  YY + FPY    +WL Y                   D F  REFSFTL  D+Y 
Sbjct: 26  VELLKIYYDKAFPYNEMFKWLSYNKFKKESRMLQSLEDDVESDYFHNREFSFTLENDVYC 85

Query: 55  RYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQ--HSVFTPKMKELVFDIDMTDY 112
           RY+ + +  + K+ L+ RCP KID+GA+++I PK+H Q    VF P  KE+VFDIDMTDY
Sbjct: 86  RYLCFKNALDFKETLVSRCPHKIDIGAVFNIAPKNHNQADKKVFIPLEKEMVFDIDMTDY 145

Query: 113 DDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAAL 172
           D+VR CC+GA +C KCW YM+ A ++++  L +DF F  LLWVFSGRRGIHCW+ DE A 
Sbjct: 146 DNVRTCCTGAKVCVKCWAYMACATQVINHVLTKDFGFSSLLWVFSGRRGIHCWIGDEQAR 205

Query: 173 ALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLST 231
            +    RS + EY+ + TAN +  + L+   LHP L++A   +   FE++ + +Q+LLS 
Sbjct: 206 QMTNEMRSAVTEYLFLPTANEMNNLDLSFP-LHPMLEKAFNFLNKHFEQIVINDQDLLSH 264

Query: 232 KERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE 291
           +  Q K + ++   +++  +  EW +   G   EKW     I+  +Q   S++K    + 
Sbjct: 265 EAHQKKFIKILP-LNLQDSVRFEWNKAHTGS--EKWAAYKKIVDKYQ---SEKKQDQTMV 318

Query: 292 EILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            ++    YPR+D +VSKG+NHLLKSPFCVHPKTGKIC
Sbjct: 319 RLVFTYLYPRIDANVSKGINHLLKSPFCVHPKTGKIC 355


>gi|345776400|ref|XP_849151.2| PREDICTED: LOW QUALITY PROTEIN: DNA primase small subunit isoform 2
           [Canis lupus familiaris]
          Length = 418

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 151/329 (45%), Positives = 212/329 (64%), Gaps = 10/329 (3%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSP 62
           +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+++ 
Sbjct: 4   FDPAELPELLKLYYRRLFPYAQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFSNQ 63

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
            +L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR CCS
Sbjct: 64  RDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCS 123

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    RS
Sbjct: 124 SADICSKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRS 183

Query: 181 CLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKV 238
            + EY+S++     VKK     + +HP + ++  II+  FE+  L +Q++L  KE   K+
Sbjct: 184 GIVEYLSLVKGGQDVKKKVHLSEKIHPFVSKSINIIKKYFEEYALVDQDILENKETWDKI 243

Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELA 298
           L LV    I  ++++ + +      +++W+ L   I     KN D+   +   EI+L+  
Sbjct: 244 LALVPET-IHEKLQQNFQK--HHNSLQRWECLKKAISSQDIKN-DKCGHWLELEIMLQYC 299

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           +PRLDI+VSKG+NHLLKSP   HPKTG+I
Sbjct: 300 FPRLDINVSKGINHLLKSPVXCHPKTGRI 328


>gi|301121816|ref|XP_002908635.1| DNA primase small subunit, putative [Phytophthora infestans T30-4]
 gi|262103666|gb|EEY61718.1| DNA primase small subunit, putative [Phytophthora infestans T30-4]
          Length = 428

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 149/353 (42%), Positives = 213/353 (60%), Gaps = 39/353 (11%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNLDNFR-KREFSFTLNGDIYARYISYNSPNELKKDL 69
           TE+L  YY R+FPY    +WL Y   + F  +RE S+TL  D Y RY ++++  ELK  +
Sbjct: 8   TELLQLYYDRLFPYQQMAQWLSYDGGEEFLFRRELSYTLENDTYIRYKAFHNAEELKTSM 67

Query: 70  IKRCPQKIDLGAIYDICPKDHLQHSV--FTPKMKELVFDIDMTDYDDVRNCCSGADICEK 127
            K  P KID+GA++ + P D  + S   FTP+ +ELVFDID+TDYDD+R CC GA IC +
Sbjct: 68  CKTMPFKIDIGAVFSVSPADKGKVSAVDFTPEQRELVFDIDLTDYDDIRTCCEGAAICNR 127

Query: 128 CWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMS 187
           CW++M  A K+L+ ALREDF F+ LLWV+SGRRGIHCW+ DE+A  L+   RS +  Y+S
Sbjct: 128 CWQFMIAAVKVLNAALREDFGFENLLWVYSGRRGIHCWIADESARGLENEARSAVVGYLS 187

Query: 188 VLTA--NPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLL---EEQELLSTKERQTKVLGLV 242
           ++    N  +KV L  + LHP L RA   +E  FE ++   + Q ++S++++  K+L +V
Sbjct: 188 LVEGNENSARKVKLR-EPLHPSLDRAYRQLEPLFEDMILSDKGQGIMSSEKQWNKLLAMV 246

Query: 243 SNGDIRAEIEKEWT----RIGPGQDVEKWDRLVAIIKHHQAKNSDR-------------- 284
            + DIRA + + W+      GP    EKW  L   ++    KN++               
Sbjct: 247 PDEDIRANMTRRWSATNRSTGPA---EKWRELRDAVEKQVLKNANSARSGSNVKRSAPNS 303

Query: 285 ---------KLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
                    +L+  ++EI+L   YPRLD +VSK  NHLLKSPF VHPKTG++C
Sbjct: 304 DASKRFLAAELRTCLQEIVLAYLYPRLDANVSKQRNHLLKSPFAVHPKTGRVC 356


>gi|383854480|ref|XP_003702749.1| PREDICTED: DNA primase small subunit-like [Megachile rotundata]
          Length = 367

 Score =  284 bits (727), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 148/326 (45%), Positives = 200/326 (61%), Gaps = 51/326 (15%)

Query: 6   DPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNEL 65
           D E+L ++LP YY R+FP+  Y RWL YG+ D F +REFSFTL  DIY R+ +Y + ++L
Sbjct: 3   DLENLADLLPTYYARLFPFNDYYRWLSYGSADLFNRREFSFTLQDDIYLRFQAYRNLSQL 62

Query: 66  KKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
           + ++ +  P KID+GA+Y++CPK+  + + F P  +ELVFDIDMTDYD+VR CCSGADIC
Sbjct: 63  ECEMKRLVPFKIDIGAVYNLCPKNQRKGTNFQPVERELVFDIDMTDYDEVRTCCSGADIC 122

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
            KCW++M +ACKILD++LR DF +  +LWVFSGRRG+HCWVCD +A +L    R  +AEY
Sbjct: 123 SKCWKFMVLACKILDSSLRLDFGYNHILWVFSGRRGLHCWVCDPSARSLGSYERGAVAEY 182

Query: 186 MSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLV 242
           + +L       KKV L+GD +H  ++RA   IE  F  + +EEQ +L T E   K L + 
Sbjct: 183 LQILDGGEYMKKKVNLSGDKIHTSIRRALDHIEAVFVPVCIEEQNILGTNEGVEKFLNVF 242

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRL 302
                            P +D ++                               A   L
Sbjct: 243 -----------------PEEDRQE-------------------------------AKALL 254

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           DI+V+KG+NHLLKSPFCVHPKTGKIC
Sbjct: 255 DINVTKGMNHLLKSPFCVHPKTGKIC 280


>gi|356553659|ref|XP_003545171.1| PREDICTED: LOW QUALITY PROTEIN: DNA primase small subunit-like
           [Glycine max]
          Length = 435

 Score =  284 bits (727), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 150/352 (42%), Positives = 215/352 (61%), Gaps = 26/352 (7%)

Query: 1   MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGN--------LDNFRKREFSFTLNGDI 52
           M    +P+     L  YY ++FP+   +RW+ YGN             +REFSFTL  DI
Sbjct: 1   MIPHQEPDFNLNHLKLYYGKLFPFVDLVRWVSYGNDGKHPGCDQSYIGRREFSFTLENDI 60

Query: 53  YARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHS------VFTPKMKELVFD 106
           Y R+ S+++ +EL+  + ++CP KID+G +Y + P     ++      VF P  +EL+FD
Sbjct: 61  YLRFQSFHNAHELENSIKEKCPVKIDIGPVYTVDPAKRNAYAQSGDNNVFAPVERELIFD 120

Query: 107 IDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWV 166
           IDM+DYDDVR CCSGAD+C  CW  M+ A K++DTALR+DF F+ +LWV+SGRRG+HCWV
Sbjct: 121 IDMSDYDDVRYCCSGADVCLVCWPLMTTAIKVIDTALRDDFGFKHILWVYSGRRGVHCWV 180

Query: 167 CDEAALALDGRGRSCLAEYMSVLTA--NPVKKVFLTGDVLHPHLKRAKL-IIEDQFEK-L 222
           CD  A  L    R  +A+Y  V     N  KKV L G  LHP L  +   +++D FEK L
Sbjct: 181 CDGKARRLTNEQRGAIADYFRVYKGNENSHKKVSLMGAALHPFLATSYTNVLKDYFEKNL 240

Query: 223 LEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWT---RIGPGQ---DVEKWDRLVAIIKH 276
           L  Q LL+T+ER  K+LG++ +  I +E+   W    R    +   +V +W++   +++ 
Sbjct: 241 LTGQNLLATEERYEKILGMIPDESIASELRGRWQDSRRSSSAKEDINVVRWEQCKQLLQ- 299

Query: 277 HQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
              K+  + L+  IEEI+    YPRLD+ VSK +NHLLK+PFCVHPKTG++C
Sbjct: 300 -SGKHKAQGLRRCIEEIVFCFTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVC 350


>gi|255549615|ref|XP_002515859.1| DNA primase, putative [Ricinus communis]
 gi|223545014|gb|EEF46528.1| DNA primase, putative [Ricinus communis]
          Length = 515

 Score =  283 bits (724), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 146/351 (41%), Positives = 219/351 (62%), Gaps = 30/351 (8%)

Query: 1   MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--------FRKREFSFTLNGDI 52
           ++++++P      L  YY ++FP+    +W+ YGN           F +REFSFTL+ DI
Sbjct: 18  VSNEFNPN----YLKLYYGKLFPHAEIFKWMCYGNDGKHPACDKSYFGRREFSFTLDNDI 73

Query: 53  YARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHS-----VFTPKMKELVFDI 107
           Y R+ S+N+ ++LK  +  +CP KID+G +Y + P     +S     VFTP  +EL+FDI
Sbjct: 74  YLRFQSFNNESQLKTSIKDKCPFKIDIGPVYTVDPAKRHAYSQSGDNVFTPVERELIFDI 133

Query: 108 DMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVC 167
           DM+DYD+VR CCSGAD+C  CW  M+IA K++++ALR+DF F  +LWV+SGRRG+HCWVC
Sbjct: 134 DMSDYDNVRYCCSGADVCLDCWPLMTIAIKVINSALRDDFGFNHILWVYSGRRGVHCWVC 193

Query: 168 DEAALALDGRGRSCLAEYMSVLTA--NPVKKVFLTGDVLHPHLKRAKL-IIEDQFE-KLL 223
           D  A  L    R+ + +Y+ V     N  K V LTG  LHP L R+   +++D FE KLL
Sbjct: 194 DGKARRLTNEQRAAIVDYLRVYKGNENSNKMVSLTGP-LHPFLVRSYAEVLKDFFETKLL 252

Query: 224 EEQELLSTKERQTKVLGLVSNGDIRAEIEKEW------TRIGPGQDVEKWDRLVAIIKHH 277
             QE+ ST+ER  K+L ++ +  + +E+  +W      +    G ++ +W++L   ++  
Sbjct: 253 SSQEIFSTEERYEKILEMIPDESVTSELRGKWQNTKQTSSSKEGVNLVRWEQLKRTLQSG 312

Query: 278 QAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
             K     L+  +EEI+    YPRLD+ VSK +NHLLK+PFC+HPKTG++C
Sbjct: 313 TKKAPG--LRKCVEEIVFSFTYPRLDVEVSKHMNHLLKAPFCIHPKTGRVC 361


>gi|168029158|ref|XP_001767093.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681589|gb|EDQ68014.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 368

 Score =  283 bits (723), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 144/299 (48%), Positives = 193/299 (64%), Gaps = 14/299 (4%)

Query: 41  KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHS-----V 95
           +REFSFTL  DIY RY+S++   E++  +  +CP KID+GA+Y++ P     ++     V
Sbjct: 47  RREFSFTLEHDIYIRYLSFHDVAEMEATIKSKCPHKIDIGALYNVEPAKRSAYAGGSDRV 106

Query: 96  FTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWV 155
           F    +ELVFDIDMTDYDD+R CCSGADIC KCW  M++A KILDT LREDF F+ LLWV
Sbjct: 107 FASVERELVFDIDMTDYDDIRTCCSGADICLKCWPLMNVAIKILDTVLREDFGFEHLLWV 166

Query: 156 FSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTA--NPVKKVFLTGDVLHPHLKRAKL 213
           +SGRRG+HCWVCD  A  L    RS +A Y+++     N  KKV LTG  LHP L RA  
Sbjct: 167 YSGRRGVHCWVCDTRARRLSNEARSAIARYLTLYKGNENTTKKVSLTGPSLHPALSRAYE 226

Query: 214 IIEDQFEK-LLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQD---VEKWDR 269
           I    FE+ +L  Q LL ++E+  KVL LV +  +R ++   W R    +D     +W  
Sbjct: 227 ICRGYFEEHILPNQGLLRSEEQFDKVLELVPDESVRTQMRDRWKRASTSKDDVSAIRWKH 286

Query: 270 LVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           L   +++ +   S R+   ++EEI+    YPRLDI VSK +NHLLK+PFC+HPKTG++C
Sbjct: 287 LKQTLENKKLAPSVRR---SVEEIVFSYTYPRLDIEVSKHMNHLLKAPFCIHPKTGRVC 342


>gi|298715191|emb|CBJ27863.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 479

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 152/353 (43%), Positives = 210/353 (59%), Gaps = 39/353 (11%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNL------------------DNFRKREFSFTLNGDIY 53
           ++L  YY R+FPY    RWL Y N+                  D F KREFSFT+  D+Y
Sbjct: 45  DLLRIYYARLFPYEQMYRWLGYSNMPASLPDSSGKPQPVDEQADFFSKREFSFTIEDDVY 104

Query: 54  ARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHL--QHSVFTPKMKELVFDIDMTD 111
            RY  +    E ++ + ++ P KID+GAI+ + PK+HL  +   F P  +ELVFDID+TD
Sbjct: 105 IRYQCFADQKEFEQQVQRKQPHKIDIGAIFTLPPKNHLAVKPGAFQPVERELVFDIDLTD 164

Query: 112 YDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAA 171
           YDDVR CCSGA IC +CW YM++A +++D  LR+DF F+ +LWV+SGRRG+HCWV D+AA
Sbjct: 165 YDDVRTCCSGAKICNRCWSYMTMAVEVMDVGLRQDFGFKHILWVYSGRRGVHCWVADDAA 224

Query: 172 LALDGRGRSCLAEYMSVLTA--NPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEE--Q 226
            AL   GR  +A+Y  V+    N  KKV ++  + HP L+RA   +E  F E ++ E  Q
Sbjct: 225 RALTNEGRGAVADYFGVVAGNDNQSKKVNVSLPI-HPSLRRAYETLEPLFLEHIITEEGQ 283

Query: 227 ELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD--R 284
            LLS      K+L  V   D+R  +E  W ++G     +KW+ LV  ++    K     +
Sbjct: 284 GLLSDPSHWGKLLATVPE-DVRQTLEGRW-KMGGSSPADKWEELVEEMEKKGRKQQQLAK 341

Query: 285 KLKYAIE---------EILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           K+K A           E++ E  YPRLD++VSKG NHLLKSPF VHPKTG++C
Sbjct: 342 KMKPADRPPTPEQWRYEVVFEHTYPRLDVNVSKGRNHLLKSPFAVHPKTGRVC 394


>gi|427784145|gb|JAA57524.1| Putative eukaryotic-type dna primase catalytic small subunit
           [Rhipicephalus pulchellus]
          Length = 411

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 143/331 (43%), Positives = 213/331 (64%), Gaps = 9/331 (2%)

Query: 1   MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYN 60
           ++  Y+PE L + LP YY ++FP   + +W+ Y +      RE SFTL  D+Y R+ S++
Sbjct: 4   VSSAYNPEFLDDFLPLYYGKLFPIDAFYKWITYSDKSRGGNREISFTLRDDVYIRFQSFS 63

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           +  E +K L  + P KID+GA+Y+  PK+H + S F P  +ELVFDIDMTDYDDVR CC 
Sbjct: 64  NKQEFQKALKDKRPHKIDIGAVYNYSPKNHHEPS-FGPTERELVFDIDMTDYDDVRTCCQ 122

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           GADIC+ CW +M++A +ILD  LR+DF F+ +LWV+SGRRG+HCWVCD  A  L    R+
Sbjct: 123 GADICKSCWAFMTLAMQILDRVLRDDFGFKHILWVYSGRRGVHCWVCDARARRLRAGARA 182

Query: 181 CLAEYMSVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTK 237
            +A Y+S+L   A   KKV L    LHP ++    I++D F  + L+ Q++L   +    
Sbjct: 183 AIASYISLLKSQAQSSKKVSLFKS-LHPSVRETLKIVKDYFPVIALQNQKVLEGDKFWHD 241

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLEL 297
           V+   S+   + +IEK    +      ++W+  VA+++  Q K++  + ++ +EE++LEL
Sbjct: 242 VVSASSDNSFKEDIEK--NVLSQTSCEKRWEAFVAVVEKAQQKST--RYQFILEEVMLEL 297

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            YPRLD+ V+KG  HLLK+PF VHPKTG++C
Sbjct: 298 CYPRLDVAVTKGTQHLLKAPFSVHPKTGRVC 328


>gi|169613034|ref|XP_001799934.1| hypothetical protein SNOG_09645 [Phaeosphaeria nodorum SN15]
 gi|111061790|gb|EAT82910.1| hypothetical protein SNOG_09645 [Phaeosphaeria nodorum SN15]
          Length = 500

 Score =  280 bits (715), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 139/325 (42%), Positives = 205/325 (63%), Gaps = 9/325 (2%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E++  +Y+R+FP+ P  +WL    +   +F  REF+FTL  D Y RY S+ + + L+K  
Sbjct: 96  EVMRAFYQRLFPFRPLFQWLNGSPIPTPSFAHREFAFTLPNDSYIRYQSFPTADLLRKQC 155

Query: 70  IKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           I+  P + ++G  Y   P+D     + S F P MKELVFDIDMTDYDD+R CC G  IC 
Sbjct: 156 IQLLPSRFEIGPQYSTNPRDRKTVRKASAFRPIMKELVFDIDMTDYDDIRTCCGGTSICH 215

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW ++++A K++D ALREDF ++ +LWV+SGRRG H WVCD+ A  LD + R  +A Y+
Sbjct: 216 KCWGFITMAVKVIDVALREDFGYKHILWVYSGRRGAHAWVCDKRARELDDQSRKSIAGYL 275

Query: 187 SVLTA--NPVKKVFLTGDVLHPHLKRAKLIIEDQFE-KLLEEQELLSTKERQTKVLGLVS 243
            +L    N  KKV L    LHPH++R+  I+++ F+  +L +Q+  +T E+   +L L+ 
Sbjct: 276 ELLKGGDNSGKKVNLRRP-LHPHIERSLAILKEHFQAAILADQDPWATDEKAAHLLNLLP 334

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLD 303
           +  +RA ++K+W          KW  + A+ K      S R+L+ A ++I+LE  YPRLD
Sbjct: 335 DTQLRAALQKKWDSSPQRPSASKWADIDALAKSGALSKSPRELQEAKQDIVLEYTYPRLD 394

Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
            +VSK +NHLLKSPF VHP TG++C
Sbjct: 395 ANVSKKLNHLLKSPFVVHPGTGRVC 419


>gi|303283408|ref|XP_003060995.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457346|gb|EEH54645.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 447

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 150/356 (42%), Positives = 209/356 (58%), Gaps = 32/356 (8%)

Query: 2   ADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNF--------RKREFSFTLNGDIY 53
           A+ Y    + +++  YY R+FP    ++WL YGN            ++REF FTL+GDI+
Sbjct: 13  ANTYAEGDVHDLMKLYYARLFPARSMMKWLSYGNDGKHPQADAGFTQRREFCFTLDGDIF 72

Query: 54  ARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHS--------VFTPKMKELVF 105
            RY S+    EL+  L  + P KIDLG ++++ P   + +         VF P  +E V 
Sbjct: 73  CRYQSFKDEKELRAALKDKTPSKIDLGPVFNVDPAKRMAYGAGGAGGDRVFAPVEREFVM 132

Query: 106 DIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCW 165
           DIDMTDYDDVR+CCS A+IC KCW  M+IA KI+D ALREDF F+ LLWV+SGRRGIH W
Sbjct: 133 DIDMTDYDDVRSCCSSANICNKCWPLMTIAVKIIDRALREDFGFKHLLWVYSGRRGIHVW 192

Query: 166 VCDEAALALDGRGRSCLAEYMSVL----TANPVKKVFLTGDVLHPHLKRA--KLIIEDQF 219
           VCD+ A ++    R+ +AEY SV      +  VK+V LT   LHP LKRA   ++     
Sbjct: 193 VCDKRARSMSNEARAAVAEYFSVYKGTDASGTVKRVSLTTP-LHPSLKRAYDDVLAPYWT 251

Query: 220 EKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEW-------TRIGPGQDVEKWDRLVA 272
           + +L  Q LL  ++    +L ++ + +IR E   +W       T   P + V +W++LV 
Sbjct: 252 DTILPNQGLLEDEKFFEPILAMIPDANIRDEFASQWKSGKKFATSACPDESVARWNKLVQ 311

Query: 273 IIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
             K   A N  +  K +  E+    AYPRLD+ VSK +NHLLK+PFCVHPKTG++C
Sbjct: 312 --KVDAANNPGKSGKQSSFEMKFAHAYPRLDVEVSKHMNHLLKAPFCVHPKTGRVC 365


>gi|356501475|ref|XP_003519550.1| PREDICTED: DNA primase small subunit-like [Glycine max]
          Length = 434

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 147/352 (41%), Positives = 213/352 (60%), Gaps = 26/352 (7%)

Query: 1   MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGN--------LDNFRKREFSFTLNGDI 52
           M  + +P+     L  YY ++FP+   +RW+ YGN             +REFSFTL  DI
Sbjct: 1   MIPQQEPDFNLNHLKLYYGKLFPFADLVRWVSYGNDGKHPGCDQSYIGRREFSFTLENDI 60

Query: 53  YARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHS------VFTPKMKELVFD 106
           Y R+ S+++  EL+  + ++ P KID+G +Y + P     ++      VF P  +EL+FD
Sbjct: 61  YLRFQSFHNALELENSIKEKTPVKIDIGPVYTVDPAKRNAYAQSGDNNVFAPVERELIFD 120

Query: 107 IDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWV 166
           IDM+DYDDVR CCSGAD+C  CW  M+IA K++DTALR+DF F+ +LWV+SGRRG+HCWV
Sbjct: 121 IDMSDYDDVRYCCSGADVCLVCWPLMTIAIKVIDTALRDDFGFKHILWVYSGRRGVHCWV 180

Query: 167 CDEAALALDGRGRSCLAEYMSVLTANPV--KKVFLTGDVLHPHLKRAKL-IIEDQFEK-L 222
           CD  A  L    R  +A+Y  V   N    KKV L G  LHP L  +   ++++ FEK L
Sbjct: 181 CDGKARRLTNEQRGAIADYFRVYKGNENSHKKVSLMGAALHPFLATSYTNVLKNYFEKNL 240

Query: 223 LEEQELLSTKERQTKVLGLVSNGDIRAEIEKEW------TRIGPGQDVEKWDRLVAIIKH 276
           L  Q LL+T+ER  K+L ++ +  I +E+   W      +      +V +W++   +++ 
Sbjct: 241 LTGQNLLATEERYEKILDMIPDESIASELRGRWQDSRRSSSAKEDINVVRWEQCKQLLQ- 299

Query: 277 HQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
              K+  + L+  IEEI+    YPRLD+ VSK +NHLLK+PFCVHPKTG++C
Sbjct: 300 -SGKHKAQGLRRCIEEIVFCFTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVC 350


>gi|328782870|ref|XP_001121983.2| PREDICTED: DNA primase small subunit [Apis mellifera]
          Length = 364

 Score =  277 bits (709), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 145/325 (44%), Positives = 193/325 (59%), Gaps = 56/325 (17%)

Query: 8   ESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKK 67
           E+L ++LP YY R+FP+  Y RWL YGN++ F  REFSFTL GD+Y R+ S+ +  EL+ 
Sbjct: 5   ENLGDLLPTYYARLFPFHDYYRWLSYGNVNTFNNREFSFTLQGDVYIRFQSFKNVKELEL 64

Query: 68  DLIKRCPQKIDLGAIYDICPKDH-LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
            + +  P KID+GA+Y+  PK+  ++ + F P  KELVFDIDMTDYD++R CCSGADIC 
Sbjct: 65  QIRRLLPVKIDVGAVYNYSPKEQKMRGTNFHPVEKELVFDIDMTDYDEIRTCCSGADICA 124

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
            CW++M++ACKILDTALR DF ++ +LWVFSGRRGIHCWVCD  A  L  R R  +AEY+
Sbjct: 125 SCWKFMALACKILDTALRSDFGYKHILWVFSGRRGIHCWVCDPCARTLTARERGAVAEYL 184

Query: 187 SVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLVS 243
            ++       KKV L GD +H  +KRA   IE  F    +EEQ +L T +   K L + +
Sbjct: 185 QIIDGGEYMKKKVNLPGDKIHHSIKRALETIEAVFVPFCIEEQNILGTDDGVEKFLQIFN 244

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLD 303
           + +I+ E                   L A+                              
Sbjct: 245 DDEIKQE-------------------LXAV------------------------------ 255

Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
              SKG+NHLLKSPFC+HPKTGK+C
Sbjct: 256 ---SKGMNHLLKSPFCIHPKTGKVC 277


>gi|330915323|ref|XP_003296983.1| hypothetical protein PTT_07247 [Pyrenophora teres f. teres 0-1]
 gi|311330584|gb|EFQ94920.1| hypothetical protein PTT_07247 [Pyrenophora teres f. teres 0-1]
          Length = 501

 Score =  276 bits (707), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 132/319 (41%), Positives = 201/319 (63%), Gaps = 7/319 (2%)

Query: 17  YYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCP 74
           +Y+R+FP+ P  +WL +     ++F  REF+FTL  D Y RY S+ + + ++K  I   P
Sbjct: 101 FYQRLFPFRPLFQWLNHSATPSNDFAHREFAFTLPNDAYLRYQSFPTADLMRKQCISMLP 160

Query: 75  QKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRY 131
            + ++G +Y   P+D     + S F P MKELVFDIDMTDYDD+R CC+GA+IC KCW +
Sbjct: 161 SRFEIGPMYSTNPRDRKTLRKASAFRPLMKELVFDIDMTDYDDIRTCCTGANICLKCWGF 220

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLT- 190
           +++A K +D ALREDF F+ +LWV+SGRRG H WVCD+ A  +D + R  +A Y+ +L  
Sbjct: 221 ITMAIKTIDVALREDFGFKHILWVYSGRRGAHAWVCDKRAREMDDQKRRAIAGYLELLKG 280

Query: 191 ANPVKKVFLTGDVLHPHLKRAKLIIEDQFE-KLLEEQELLSTKERQTKVLGLVSNGDIRA 249
            +   K  +    LHPHL+R+  I+++ F+  +L +Q+  +++E+   +L L+ +  +RA
Sbjct: 281 GDQGGKKVMARRPLHPHLERSLAILKEHFQTSILADQDPWASEEKAAHLLTLIPDTTLRA 340

Query: 250 EIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKG 309
            ++K+W          KW  + A+ K      S + L  A ++I+LE  YPRLD  VSK 
Sbjct: 341 ALQKKWDSAPNRPSASKWSDIDALAKSGHLSKSPKDLLEAKQDIILEYTYPRLDAEVSKK 400

Query: 310 VNHLLKSPFCVHPKTGKIC 328
           +NHLLKSPF +HP TG++C
Sbjct: 401 LNHLLKSPFVIHPGTGRVC 419


>gi|189210964|ref|XP_001941813.1| DNA primase small subunit [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187977906|gb|EDU44532.1| DNA primase small subunit [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 486

 Score =  276 bits (707), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 133/319 (41%), Positives = 200/319 (62%), Gaps = 7/319 (2%)

Query: 17  YYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCP 74
           +Y+R+FP+ P  +WL +     ++F  REF+FTL  D Y RY S+ + + L+K  I   P
Sbjct: 87  FYQRLFPFRPLFQWLNHSATPSNDFAHREFAFTLPNDAYLRYQSFPTADLLRKQCINMLP 146

Query: 75  QKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRY 131
            + ++G +Y   P+D     + S F P MKELVFDIDMTDYDD+R CC+GA IC KCW +
Sbjct: 147 SRFEIGPMYSTNPRDRKTLRKASAFRPLMKELVFDIDMTDYDDIRTCCTGASICLKCWGF 206

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLT- 190
           +++A K +D ALREDF F+ +LWV+SGRRG H WVCD+ A  +D + R  +A Y+ +L  
Sbjct: 207 ITMAIKTIDVALREDFGFKHILWVYSGRRGAHAWVCDKRAREMDDQKRRAIAGYLELLKG 266

Query: 191 ANPVKKVFLTGDVLHPHLKRAKLIIEDQFE-KLLEEQELLSTKERQTKVLGLVSNGDIRA 249
            +   K  +    LHPHL+R+  I+++ F+  +L +Q+  +++E+   +L L+ +  +RA
Sbjct: 267 GDQGGKKVMARRPLHPHLERSLAILKEHFQTSILADQDPWASEEKAAHLLTLIPDTSLRA 326

Query: 250 EIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKG 309
            ++K+W          KW  + A+ K      S + L  A ++I+LE  YPRLD  VSK 
Sbjct: 327 ALQKKWDSAPNRPSASKWSDIDALAKSGHLSKSPKDLLEAKQDIILEYTYPRLDAEVSKK 386

Query: 310 VNHLLKSPFCVHPKTGKIC 328
           +NHLLKSPF +HP TG++C
Sbjct: 387 LNHLLKSPFVIHPGTGRVC 405


>gi|322708046|gb|EFY99623.1| DNA primase small subunit [Metarhizium anisopliae ARSEF 23]
          Length = 513

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 141/329 (42%), Positives = 207/329 (62%), Gaps = 10/329 (3%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELK 66
           S  E++  +Y+R+FP+    +WL +     ++F  REF+FTL  D Y RY S+ + + L+
Sbjct: 100 SDPEVMRSFYQRLFPWRQLFQWLNHSPTPTNDFGNREFAFTLQNDAYLRYQSFATADLLR 159

Query: 67  KDLIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGAD 123
           KD+++  P + ++G +Y   P+D       S F P  KEL FDID+TDYDD+R CC  A+
Sbjct: 160 KDVLRLMPSRFEIGPVYSTNPRDRKMLRNSSAFKPLAKELCFDIDLTDYDDIRTCCDKAN 219

Query: 124 ICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLA 183
           IC KCW++M++A K++D ALREDF F+ ++WV+SGRRG H WVCD+   +LD + R  +A
Sbjct: 220 ICNKCWKFMTMAIKVVDVALREDFGFKHIMWVYSGRRGAHAWVCDKKVRSLDDQKRKAIA 279

Query: 184 EYMSVLT--ANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLG 240
            Y+ V+   A   KKV +    LHPHL R+  I++  F E +LE Q+   T+ER  K+L 
Sbjct: 280 GYLEVVKGGAQSGKKVNVRR-PLHPHLARSLEILKTHFQEDVLEVQDPWGTEERYEKLLQ 338

Query: 241 LVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLELAY 299
           L+ + ++   + ++W        V KW  + A+ K   +KN D R L  A ++I+LE  Y
Sbjct: 339 LLPDRNLNESLRRKWDAAPGRASVSKWADIDALAKTGASKNLDARALLEAKQDIVLEYTY 398

Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           PRLDI VSK +NHLLKSPF VHP TG++C
Sbjct: 399 PRLDIEVSKKLNHLLKSPFVVHPGTGRVC 427


>gi|451850185|gb|EMD63487.1| hypothetical protein COCSADRAFT_90881 [Cochliobolus sativus ND90Pr]
          Length = 496

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 132/319 (41%), Positives = 200/319 (62%), Gaps = 7/319 (2%)

Query: 17  YYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCP 74
           +Y+R+FP+ P  +WL +     ++F  REF+FTL  D Y RY S+ + + L+K  I   P
Sbjct: 97  FYQRLFPFRPLFQWLNHSATPSNDFAHREFAFTLPNDAYLRYQSFPTSDLLRKQCISMLP 156

Query: 75  QKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRY 131
            + ++G +Y   P+D     + S F P MKELVFDIDMTDYDD+R CC+GA IC KCW +
Sbjct: 157 SRFEIGPMYSTNPRDRKTLRKASAFRPVMKELVFDIDMTDYDDIRTCCTGASICLKCWGF 216

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLT- 190
           +++A K +D ALREDF F+ +LWV+SGRRG H WVCD+ A  +D + R  +A Y+ +L  
Sbjct: 217 ITMAIKTIDVALREDFGFKHILWVYSGRRGAHAWVCDKHAREMDDQRRRSVASYLELLKG 276

Query: 191 ANPVKKVFLTGDVLHPHLKRAKLIIEDQFE-KLLEEQELLSTKERQTKVLGLVSNGDIRA 249
            +   K       LHPHL+R+  I+++ F+  +L EQ+  ++ E+   +L L+ +  ++A
Sbjct: 277 GDQAGKKVHARRPLHPHLERSLEILKEHFQTSILAEQDPWASDEKAAHLLNLLPDPTLKA 336

Query: 250 EIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKG 309
            ++K+W+         KW  +  + +      + R+L+ A ++I+LE  YPRLD  VSK 
Sbjct: 337 ALQKKWSSAPSRPSASKWSDINTLAESGALSKTPRELREAKQDIILEYTYPRLDAEVSKK 396

Query: 310 VNHLLKSPFCVHPKTGKIC 328
           +NHLLKSPF VHP TG++C
Sbjct: 397 LNHLLKSPFVVHPGTGRVC 415


>gi|10177372|dbj|BAB10663.1| DNA polymerase alpha subunit IV (primase)-like protein [Arabidopsis
           thaliana]
          Length = 407

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 138/305 (45%), Positives = 195/305 (63%), Gaps = 17/305 (5%)

Query: 39  FRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHS---- 94
           F +REFSFTL  D+Y RY S+ + + ++  +    P KID+GA+Y + P     ++    
Sbjct: 47  FGRREFSFTLENDVYLRYKSFKNASLMEAAIKSNFPYKIDIGAVYSVDPDKRHAYAQSGT 106

Query: 95  -VFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLL 153
            +FTP  +ELVFDID+TDYDDVR CCSGAD+C KCW  M++A K++DT+LREDF F+ +L
Sbjct: 107 NLFTPVERELVFDIDITDYDDVRYCCSGADVCSKCWPLMTVAIKVIDTSLREDFGFKHIL 166

Query: 154 WVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANP--VKKVFLTGDVLHPHLKRA 211
           WVFSGRRG+HCWVCD  A  L    RS +AEY  V   N    KKV L G  LHP L R+
Sbjct: 167 WVFSGRRGVHCWVCDAKARRLTNEQRSAVAEYFRVYKGNENNAKKVDLMGHSLHPFLARS 226

Query: 212 KL-IIEDQFE-KLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVE---- 265
            +  I+  FE +L   Q + S+KE+  K+LG++++ DI+A++  +W         E    
Sbjct: 227 YVDFIKSFFEGELQATQSIFSSKEKYEKILGMITDEDIQADLRGKWENSARSSLSEEATS 286

Query: 266 --KWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPK 323
             +W++L   ++    +N    L+  +EEI+    YPR+D+ VSK +NHLLK+PFCVHPK
Sbjct: 287 LLRWEQLKKALQ--SKRNKALSLRTCVEEIVFTFTYPRIDLEVSKQMNHLLKAPFCVHPK 344

Query: 324 TGKIC 328
           TG++C
Sbjct: 345 TGRVC 349


>gi|213410589|ref|XP_002176064.1| DNA primase small subunit [Schizosaccharomyces japonicus yFS275]
 gi|212004111|gb|EEB09771.1| DNA primase small subunit [Schizosaccharomyces japonicus yFS275]
          Length = 421

 Score =  274 bits (700), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 139/325 (42%), Positives = 207/325 (63%), Gaps = 8/325 (2%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           EM+  YYK +FP+    +WL +G +  ++F  REF+FTL  D Y RY+S+ + ++LKK+ 
Sbjct: 30  EMMTQYYKHLFPWKLLFQWLNHGVIPSNDFTHREFAFTLQNDAYLRYLSFPTFDDLKKEA 89

Query: 70  IKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEK 127
           ++  P + ++G +Y   P+D   L+ + F P  KELVFDIDMTDYDDVR CCS A++C K
Sbjct: 90  VQMTPSRFEIGPVYSANPRDRKTLKKASFKPLEKELVFDIDMTDYDDVRTCCSKANVCPK 149

Query: 128 CWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMS 187
           CW +M++A K+LDT  REDF F+ +LWV+SGRRGIH W+CDE A  LD RGR  +A Y+ 
Sbjct: 150 CWLFMTVAMKVLDTTFREDFGFEHILWVYSGRRGIHAWICDEKARQLDDRGRRMIAGYLQ 209

Query: 188 VLTANPVKKVFLTG--DVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVSN 244
           V+  +    V + G    LHP + R+  ++ + F + +L EQ+   ++E   ++L  + +
Sbjct: 210 VVVGDVQGGVRVNGLKRPLHPFISRSLELLSESFAQTILREQDPWRSEEGAERLLKALPD 269

Query: 245 GDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDR-KLKYAIEEILLELAYPRLD 303
             + A + K+W+       + KW  + ++     +K  D   LK A ++I+L   YPRLD
Sbjct: 270 KGLVAALRKKWSVDLERPSISKWADIDSVASAGVSKTLDPVTLKNAKQDIVLSYMYPRLD 329

Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
           + VSK +NHLLKSPFCVHP TG+IC
Sbjct: 330 VEVSKHLNHLLKSPFCVHPGTGRIC 354


>gi|451993317|gb|EMD85791.1| hypothetical protein COCHEDRAFT_1207759 [Cochliobolus
           heterostrophus C5]
          Length = 500

 Score =  273 bits (699), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 134/320 (41%), Positives = 202/320 (63%), Gaps = 9/320 (2%)

Query: 17  YYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCP 74
           +Y+R+FP+ P  +WL +     ++F  REF+FTL  D Y RY S+ + + L+K  I   P
Sbjct: 101 FYQRLFPFRPLFQWLNHSVTPSNDFAHREFAFTLPNDAYLRYQSFPTSDLLRKQCISMLP 160

Query: 75  QKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRY 131
            + ++G +Y   P+D     + S F P MKELVFDIDMTDYDD+R CC+GA IC KCW +
Sbjct: 161 SRFEIGPMYSTNPRDRKTLRKASAFRPVMKELVFDIDMTDYDDIRTCCTGASICLKCWGF 220

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTA 191
           +++A K +D ALREDF F+ +LWV+SGRRG H WVCD+ A  +D + R  +A Y+ +L  
Sbjct: 221 ITMAIKTIDVALREDFGFKHILWVYSGRRGAHAWVCDKRAREMDDQRRRSVASYLELLKG 280

Query: 192 NPV--KKVFLTGDVLHPHLKRAKLIIEDQFE-KLLEEQELLSTKERQTKVLGLVSNGDIR 248
                KKV      LHPHL+R+  I+++ F+  +L EQ+  +++E+   +L L+ +  ++
Sbjct: 281 GDQGGKKVH-ARRPLHPHLERSLEILKEHFQTSILAEQDPWASEEKAAHLLNLLPDPTLK 339

Query: 249 AEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSK 308
           A ++K+W+         KW  +  + +      + R+L+ A ++I+LE  YPRLD  VSK
Sbjct: 340 AALQKKWSSAPSRPSASKWSDINTLAESGALSKTPRELREAKQDIILEYTYPRLDAEVSK 399

Query: 309 GVNHLLKSPFCVHPKTGKIC 328
            +NHLLKSPF VHP TG++C
Sbjct: 400 KLNHLLKSPFVVHPGTGRVC 419


>gi|322697509|gb|EFY89288.1| DNA primase small subunit [Metarhizium acridum CQMa 102]
          Length = 512

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/329 (42%), Positives = 206/329 (62%), Gaps = 10/329 (3%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELK 66
           S  E++  +Y+R+FP+    +WL +     ++F  REF+FTL  D Y RY S+ + + L+
Sbjct: 99  SDPEVMRSFYQRLFPWRQLFQWLNHSPTPTNDFGNREFAFTLQNDAYLRYQSFATADLLR 158

Query: 67  KDLIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGAD 123
           KD+++  P + ++G +Y   P+D       S F P  KEL FDID+TDYDD+R CC  A+
Sbjct: 159 KDVLRLMPSRFEIGPVYSTNPRDRKMLRNSSAFKPLAKELCFDIDLTDYDDIRTCCDKAN 218

Query: 124 ICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLA 183
           IC KCW++M++A K++D ALREDF F+ ++WV+SGRRG H WVCD+   +LD + R  +A
Sbjct: 219 ICNKCWKFMTMAIKVVDVALREDFGFKHIMWVYSGRRGAHAWVCDKKVRSLDDQKRKAIA 278

Query: 184 EYMSVLT--ANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLG 240
            Y+ V+   A   KKV +    LHPHL R+  I++  F E +LE Q+   T+ER  K+L 
Sbjct: 279 GYLEVVKGGAQSGKKVNVR-RPLHPHLARSLEILKTHFQEDVLEVQDPWGTEERYEKLLQ 337

Query: 241 LVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLELAY 299
           L+ +  +   + ++W        V KW  + A+ K   +KN D R L  A ++I+LE  Y
Sbjct: 338 LLPDRILNESLRRKWDAAPGRASVSKWADIDAVAKTGASKNLDARALLEAKQDIVLEYTY 397

Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           PRLDI VSK +NHLLKSPF VHP TG++C
Sbjct: 398 PRLDIEVSKKLNHLLKSPFVVHPGTGRVC 426


>gi|396473736|ref|XP_003839405.1| similar to DNA primase small subunit [Leptosphaeria maculans JN3]
 gi|312215974|emb|CBX95926.1| similar to DNA primase small subunit [Leptosphaeria maculans JN3]
          Length = 494

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 134/319 (42%), Positives = 202/319 (63%), Gaps = 7/319 (2%)

Query: 17  YYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCP 74
           +Y+RIFP+    +WL +G +   +F  REF+FTL  + Y RY S+ + + L+K  I   P
Sbjct: 95  FYQRIFPFRQLFQWLNHGPIPSHDFDHREFAFTLPNESYLRYQSFGTADLLRKQCIAMLP 154

Query: 75  QKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRY 131
            + ++G +Y   P+D     + S F P MKELVFDIDMTDYDD+R CC+GA+IC KCW +
Sbjct: 155 TRFEIGPMYSTNPRDRKTLRKASAFRPLMKELVFDIDMTDYDDIRTCCNGANICHKCWSF 214

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLT- 190
           +++A K LD ALREDF F+ +LWV+SGRRG H WVCD+ A  LD + R  +A Y  +L  
Sbjct: 215 ITMAIKTLDIALREDFGFKHILWVYSGRRGAHAWVCDKRARELDDQKRRAIAGYFELLKG 274

Query: 191 ANPVKKVFLTGDVLHPHLKRAKLIIEDQFE-KLLEEQELLSTKERQTKVLGLVSNGDIRA 249
            +   K       LHPH++R++ I+++ F+  +L EQ+  +T+E+   +L L+ +  +RA
Sbjct: 275 GDQGGKKVNARRPLHPHIERSRQILKEYFQTTILAEQDPWATEEKAQHLLNLLPDTTLRA 334

Query: 250 EIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKG 309
            ++K+W+         KW  + ++ +      + ++L  A ++I+LE  YPRLD  VSK 
Sbjct: 335 ALQKKWSSSPNRSSASKWADIDSLAESGNLSKTPKELLEAKQDIVLEYTYPRLDAEVSKK 394

Query: 310 VNHLLKSPFCVHPKTGKIC 328
           +NHLLKSPF VHP TG++C
Sbjct: 395 LNHLLKSPFVVHPGTGRVC 413


>gi|297805452|ref|XP_002870610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316446|gb|EFH46869.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 402

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 138/307 (44%), Positives = 194/307 (63%), Gaps = 19/307 (6%)

Query: 39  FRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKD-----HLQH 93
           F +REFSFTL  D+Y RY S+ + + ++  +    P KID+GA+Y + P       H   
Sbjct: 47  FGRREFSFTLENDVYLRYKSFKNASVMEDAIKSNFPYKIDIGAVYSVDPDKRHAYAHSGT 106

Query: 94  SVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLL 153
           ++FTP  +ELVFDID+TDYDDVR CCSGAD+C KCW  M++A K++DT+LREDF F+ +L
Sbjct: 107 NLFTPVERELVFDIDITDYDDVRYCCSGADVCSKCWPLMTVAIKVIDTSLREDFGFKHIL 166

Query: 154 WVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANP--VKKVFLTGDVLHPHLKRA 211
           WVFSGRRG+HCWVCD  A  L    RS +AEY  V   N    KKV L G  LHP L   
Sbjct: 167 WVFSGRRGVHCWVCDAKARRLTNEQRSAVAEYFRVYKGNENNAKKVDLMGHSLHPFLAYG 226

Query: 212 KLIIE---DQFE-KLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVE-- 265
           +  ++   + FE +L   Q L S++E+  K+LG++++ DI+A++  +W         E  
Sbjct: 227 RSYVDFLKNFFEGELQANQSLFSSEEKYEKILGMITDEDIQADLRGKWENSARSSLSEEA 286

Query: 266 ----KWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVH 321
               +W++L   ++    KN    L+  +EEI+    YPR+D+ VSK +NHLLK+PFCVH
Sbjct: 287 TSRLRWEQLKKRLQ--SKKNKALSLRTCVEEIVFTFTYPRIDLEVSKQMNHLLKAPFCVH 344

Query: 322 PKTGKIC 328
           PKTG++C
Sbjct: 345 PKTGRVC 351


>gi|336467573|gb|EGO55737.1| DNA primase small subunit [Neurospora tetrasperma FGSC 2508]
 gi|350287775|gb|EGZ69011.1| DNA primase small subunit [Neurospora tetrasperma FGSC 2509]
          Length = 573

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 140/328 (42%), Positives = 209/328 (63%), Gaps = 12/328 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E++  +Y+R+FP+    +WL +     ++F  REF+FTL  D Y RY S+ + + L+KD+
Sbjct: 152 EVMRTFYQRLFPWRYLFQWLNHSPTPTNDFGHREFAFTLQNDAYLRYQSFTTSDLLRKDV 211

Query: 70  IKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++  P + ++G +Y   P+D       S F P  KEL FDID+TDYDD+R CC  A+IC+
Sbjct: 212 LRLMPSRFEIGPVYTANPRDRKTLRNSSAFRPLSKELCFDIDLTDYDDIRTCCDKANICQ 271

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW+++++A K++DTALREDF F+ ++WV+SGRRG H WVCD++A ALD + R  +A Y+
Sbjct: 272 KCWQFITMAIKVVDTALREDFGFKHIMWVYSGRRGAHAWVCDKSARALDDQKRRAIAGYL 331

Query: 187 SVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLVS 243
            V+   A   KKV L    LHPHL R+  I++  F+  +LE Q+   T+++Q K+L L+ 
Sbjct: 332 EVIRGGAQSGKKVNLRR-PLHPHLVRSLDILKQHFQSDVLEAQDPWRTEDQQEKLLALLP 390

Query: 244 NG--DIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEILLELAYP 300
           +    + + +  +W          KW  + ++ K   AKN D K L  A ++I+LE  YP
Sbjct: 391 SDQKQLVSALRNKWASSPDRPSTLKWADIDSVAKTSTAKNFDTKSLLDAKQDIVLEYTYP 450

Query: 301 RLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           RLDI VSK +NHLLKSPF VHP TG++C
Sbjct: 451 RLDIEVSKKLNHLLKSPFVVHPGTGRVC 478


>gi|19114677|ref|NP_593765.1| DNA primase catalytic subunit Spp1 [Schizosaccharomyces pombe
           972h-]
 gi|3183125|sp|O14215.1|PRI1_SCHPO RecName: Full=DNA primase small subunit
 gi|2440193|emb|CAB11078.1| DNA primase catalytic subunit Spp1 [Schizosaccharomyces pombe]
          Length = 454

 Score =  271 bits (692), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 139/327 (42%), Positives = 206/327 (62%), Gaps = 9/327 (2%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           +E +  YY+ +FP+    +WL +G +  ++F  REF+FTL  D Y RY+S+++  ELKK+
Sbjct: 32  SETMIQYYRHLFPWKYLFQWLNHGPVVTNDFAHREFAFTLPNDAYIRYLSFSNWEELKKE 91

Query: 69  LIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
            +  CP + ++G +Y   P+D   ++ S F P  KELVFDIDMTDYDDVR CCS  +ICE
Sbjct: 92  ALNLCPSRFEVGPVYSANPRDRKTIRKSTFHPLKKELVFDIDMTDYDDVRTCCSKTNICE 151

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW +++IA ++LD    EDF F+ +LWV+SGRRGIH W+CDE A +LD R R  +A Y+
Sbjct: 152 KCWPFITIAVQVLDICFHEDFGFKHILWVYSGRRGIHAWICDEIACSLDDRSRRMIASYL 211

Query: 187 SVLTANPVKKVFLTGDV---LHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLV 242
            V+  NP   V L  ++   LHPHL R+  I++  F K+ LE+Q+  ++KE    +L L+
Sbjct: 212 QVVVGNPQGGVRLINNLKRPLHPHLTRSLNILKSAFVKIVLEDQDPWASKEGAENLLKLL 271

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQ-AKNSDRKLKYAIEEILLELAYPR 301
            + D+ + + K+W          KW  +  ++     A  S   +  A ++I+L   YPR
Sbjct: 272 PDKDLASALRKKWEVDPERSSKNKWSDIDTVLASGSIASISPSVIAIAKQDIVLTYLYPR 331

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           LD+ VS+ +NHLLKSPFCVHP T ++C
Sbjct: 332 LDVEVSRHLNHLLKSPFCVHPGTSRVC 358


>gi|324512576|gb|ADY45206.1| DNA primase small subunit [Ascaris suum]
          Length = 423

 Score =  270 bits (691), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 142/341 (41%), Positives = 211/341 (61%), Gaps = 17/341 (4%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           YDP  L   LP YY+R+FP+ P+ +WL YG   +  F +REF+F L GD++ RY S+N  
Sbjct: 12  YDPSMLARYLPEYYRRLFPFKPFCKWLSYGEKASSYFARREFAFILEGDVHLRYRSFNDA 71

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGA 122
            E +K+L K  P K+D+GA+Y   PKD+ +   F    +ELVFDID+TDY+++R CCS A
Sbjct: 72  VEFEKELCKTSPHKLDIGAVYSHQPKDNKKFGDFRALERELVFDIDLTDYNEIRKCCSEA 131

Query: 123 DICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCL 182
           ++C KCWR+++IA K+LD  L+EDF F+  LWVFSGRRG+HCW+ D  A  L   GRS +
Sbjct: 132 NLCRKCWRWITIAIKVLDNILKEDFGFEHRLWVFSGRRGVHCWIADSVARKLTSMGRSAV 191

Query: 183 AEYMSVLTANP-VKKVFLTGDVLHPHLKRA-KLIIED-QFEKLLEEQELLSTKERQTKVL 239
           AEY+S+++ +  V  V      +HP +  A +LI+E  +F++++ EQ  LS ++  + +L
Sbjct: 192 AEYLSLISGDAKVVSVASKRGYMHPMITDAYQLIMESGEFDRMVIEQGWLSDQQGFSSLL 251

Query: 240 GLVSNGDIRAEIEKEWTRIGPGQDVE-KWD----RLVAIIKHHQAKNSDRKLKYAIEEIL 294
              ++  +R E+      +   +  E +W     +L  I +   A+      + A +E +
Sbjct: 252 EGCTDVSVRNELNAIVNDVLSVESTEQRWHALRIKLDEIKRKEMAETGLELCQAASKEAM 311

Query: 295 -------LELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
                  L+ AYPRLD++VS   NHLLKSPFCVHPKTG+I 
Sbjct: 312 NYFRGFVLQHAYPRLDVNVSTSTNHLLKSPFCVHPKTGRIA 352


>gi|85093187|ref|XP_959645.1| DNA primase small subunit [Neurospora crassa OR74A]
 gi|28921091|gb|EAA30409.1| DNA primase small subunit [Neurospora crassa OR74A]
          Length = 576

 Score =  270 bits (691), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 140/328 (42%), Positives = 209/328 (63%), Gaps = 12/328 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E++  +Y+R+FP+    +WL +     ++F  REF+FTL  D Y RY S+ + + L+KD+
Sbjct: 152 EVMRTFYQRLFPWRYLFQWLNHSPTPTNDFGHREFAFTLQNDAYLRYQSFTTSDLLRKDV 211

Query: 70  IKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++  P + ++G +Y   P+D       S F P  KEL FDID+TDYDD+R CC  A+IC+
Sbjct: 212 LRLMPSRFEIGPVYTANPRDRKTLRNSSAFRPLSKELCFDIDLTDYDDIRTCCDKANICQ 271

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW+++++A K++DTALREDF F+ ++WV+SGRRG H WVCD++A ALD + R  +A Y+
Sbjct: 272 KCWQFITMAIKVVDTALREDFGFKHIMWVYSGRRGAHAWVCDKSARALDDQKRRAIAGYL 331

Query: 187 SVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLVS 243
            V+   A   KKV L    LHPHL R+  I++  F+  +LE Q+   T+++Q K+L L+ 
Sbjct: 332 EVIRGGAQSGKKVNLRR-PLHPHLVRSLDILKQHFQSDVLEAQDPWRTEDQQEKLLALLP 390

Query: 244 NG--DIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEILLELAYP 300
           +    + + +  +W          KW  + ++ K   AKN D K L  A ++I+LE  YP
Sbjct: 391 SDQKQLVSALRNKWASSPDRPSTLKWADIDSVAKTSTAKNFDTKSLLDAKQDIVLEYTYP 450

Query: 301 RLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           RLDI VSK +NHLLKSPF VHP TG++C
Sbjct: 451 RLDIEVSKKLNHLLKSPFVVHPGTGRVC 478


>gi|340378022|ref|XP_003387527.1| PREDICTED: DNA primase small subunit-like [Amphimedon
           queenslandica]
          Length = 371

 Score =  270 bits (690), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 147/332 (44%), Positives = 195/332 (58%), Gaps = 54/332 (16%)

Query: 1   MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYN 60
            + +YD   L ++L FYY  IFPY  Y  WL Y   D+F  REFSFTL  D+Y RY S++
Sbjct: 17  FSSEYDRSQLPDLLKFYYSWIFPYQKYYEWLCYDE-DSFSHREFSFTLEDDVYVRYQSFD 75

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           S + LK+ + K CP KID+GAI++  P+ H  +Q   F  + KELVFDIDMTDYDD+R C
Sbjct: 76  SCSALKEGIRKNCPFKIDIGAIFNHKPRIHKSIQPGNFRAESKELVFDIDMTDYDDIRTC 135

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS A+IC  CW ++ IA KI+D AL EDF F   LWV+SGRRG+HCWVCD  A  L    
Sbjct: 136 CSDANICHNCWTFVKIAIKIIDRALSEDFGFSHRLWVYSGRRGVHCWVCDPQARKLSQSA 195

Query: 179 RSCLAEYMSVLTAN--PVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQT 236
           R+ +AEY++++  N   VKKV L   + HP +  A  II++  E L+ EQ+ LS++ER  
Sbjct: 196 RTAIAEYLTLVKGNDQQVKKVSLKQPI-HPSINNALGIIDEYIETLVMEQDYLSSEERCN 254

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLE 296
           K+                                            DR  K    E+ L+
Sbjct: 255 KL--------------------------------------------DRTCK----EVKLQ 266

Query: 297 LAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            +YPRLD++V+KG+NHLLKSP CVHPKTG++C
Sbjct: 267 YSYPRLDVNVTKGLNHLLKSPLCVHPKTGRVC 298


>gi|340518656|gb|EGR48896.1| DNA primase, small subunit [Trichoderma reesei QM6a]
          Length = 438

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 137/331 (41%), Positives = 206/331 (62%), Gaps = 10/331 (3%)

Query: 7   PESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNE 64
           P S  E++  +Y+R+FP+    +WL +     ++F  REF+FTL  D Y RY S+ + + 
Sbjct: 21  PASDPEVMRSFYQRLFPWRQLFQWLNHSPTPSNDFGNREFAFTLQNDAYLRYQSFATADL 80

Query: 65  LKKDLIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
           L+KD+++  P + ++G +Y   P+D       S F P  KEL FDID+TDYDD+R CC  
Sbjct: 81  LRKDVLRLMPSRFEIGPVYTTNPRDRKTLRNSSAFKPLSKELCFDIDLTDYDDIRTCCDK 140

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
           A IC KCW++M++A K++D ALR+DF F+ ++WV+SGRRG H WVCD+ A +LD + R  
Sbjct: 141 ATICNKCWQFMTMAIKVVDVALRDDFGFKHIMWVYSGRRGAHAWVCDKKARSLDDQKRRA 200

Query: 182 LAEYMSVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKV 238
           +A Y+ V+   +   KKV +    LHPHL R+  I++  F E +L  Q+  +T E+  K+
Sbjct: 201 IANYLEVIRGGSQSGKKVNVKR-PLHPHLSRSLDILKTHFQEDVLAVQDPWATDEQAQKL 259

Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEILLEL 297
           L L+ + ++   + ++W          KW  + A+ K   +K+ D K L  A ++I+LE 
Sbjct: 260 LQLLPDRNLNESLRRKWEAAPGRSSTSKWADIDAVAKTGASKHLDSKALLEAKQDIVLEY 319

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            YPRLDI VSK +NHLLKSPF VHP TG++C
Sbjct: 320 TYPRLDIEVSKKLNHLLKSPFVVHPGTGRVC 350


>gi|358394349|gb|EHK43742.1| hypothetical protein TRIATDRAFT_150169 [Trichoderma atroviride IMI
           206040]
          Length = 411

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 135/321 (42%), Positives = 201/321 (62%), Gaps = 10/321 (3%)

Query: 17  YYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCP 74
           +Y+R+FP+    +WL +     ++F  REF+FTL  D Y RY S+ + + L+KD+++  P
Sbjct: 4   FYQRLFPWRQLFQWLNHSPTPTNDFGNREFAFTLQNDAYLRYQSFATADLLRKDVLRLMP 63

Query: 75  QKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRY 131
            + ++G +Y   P+D       S F P  KEL FDID+TDYDD+R CC  A IC KCW++
Sbjct: 64  SRFEIGPVYSTNPRDRKTLRNSSAFKPLAKELCFDIDLTDYDDIRTCCDKATICNKCWQF 123

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLT- 190
           M++A K++D ALREDF F+ ++WV+SGRRG H WVCD+ A ++D + R  +A Y+ V+  
Sbjct: 124 MTMAIKVVDVALREDFGFKHIMWVYSGRRGAHAWVCDKKARSMDDQKRRAIANYLEVIRG 183

Query: 191 -ANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVSNGDIR 248
            +   KKV +    LHPHL R+  I++  F E +L+ Q+   T E+  K+L L+ + ++ 
Sbjct: 184 GSQSGKKVNVKR-PLHPHLSRSLDILKTHFQEDVLDVQDPWGTSEQAEKLLQLLPDRNLN 242

Query: 249 AEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLELAYPRLDIHVS 307
             + ++W          KW  + A+ K   +KN D R L  A ++I+LE  YPRLDI VS
Sbjct: 243 DSLRRKWESAPGRSSTSKWADIDAVAKTGASKNLDSRALLEAKQDIVLEYTYPRLDIEVS 302

Query: 308 KGVNHLLKSPFCVHPKTGKIC 328
           K +NHLLKSPF VHP TG++C
Sbjct: 303 KKLNHLLKSPFVVHPGTGRVC 323


>gi|384494914|gb|EIE85405.1| DNA primase, eukaryotic-type, small subunit [Rhizopus delemar RA
           99-880]
          Length = 361

 Score =  268 bits (685), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 136/292 (46%), Positives = 188/292 (64%), Gaps = 5/292 (1%)

Query: 38  NFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICP--KDHLQHSV 95
           NF  REFSFTL  DIY R+ S+ + +ELKK++ +  P KID+GAIY + P  K  +    
Sbjct: 72  NFTHREFSFTLPSDIYIRFKSFANIDELKKEIERIQPIKIDIGAIYAVKPNLKKTVSEKA 131

Query: 96  FTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWV 155
           F P  KELV DIDMTDYDD+R+CCSG DIC  CW +M++A K++D ALR+DF F+ +LWV
Sbjct: 132 FKPIEKELVLDIDMTDYDDIRSCCSGGDICHLCWEFMTVAMKVIDAALRDDFGFKHVLWV 191

Query: 156 FSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLII 215
           +SGRRG+HCW+ DE A  L    R  +  Y++V+  +  K   +  +VLHP LKR+  I+
Sbjct: 192 YSGRRGVHCWISDERARRLTNDRRKAIVNYLNVVKGSAQKARRVKLNVLHPSLKRSLDIL 251

Query: 216 EDQFEK-LLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAII 274
            + F+  LL    +L T+E + K+L ++ +G  + +IEK W     G   EKWD L   I
Sbjct: 252 NEHFDHLLLNNMGILDTEEGRRKILEIIPDGAAKEKIEKMWQENTHGSAQEKWDYLNKTI 311

Query: 275 KHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGK 326
           +  ++K   R   +   +I+ + AYPRLD+ VS  +NHLLKSPFCVHPKT K
Sbjct: 312 EKIESKK--RYKDHVGRDIVFQYAYPRLDVKVSTNINHLLKSPFCVHPKTCK 361


>gi|346327083|gb|EGX96679.1| DNA primase small subunit [Cordyceps militaris CM01]
          Length = 517

 Score =  268 bits (684), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 138/327 (42%), Positives = 201/327 (61%), Gaps = 11/327 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E++  +Y+R+FP+    +WL +     ++F  REF+FTL  D Y RY S+ + + L+KD+
Sbjct: 102 EVMRSFYQRLFPWRQLFQWLNHSPTPTNDFGNREFAFTLQNDAYLRYQSFATADLLRKDV 161

Query: 70  IKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++  P + ++G +Y   P+D       S F P  KEL FDID+TDYDD+R CC  A+IC 
Sbjct: 162 LRLMPSRFEIGPVYTTNPRDRKTLRNSSAFKPLAKELCFDIDLTDYDDIRTCCDKANICT 221

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW +M++A K++D ALR+DF FQ +LWV+SGRRG H WVCD+ A ++D   R  +A Y+
Sbjct: 222 KCWTFMTMAIKVVDVALRDDFGFQHILWVYSGRRGAHAWVCDKKARSMDDAKRKAIAGYL 281

Query: 187 SVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQFE-KLLEEQELLSTKERQTKVLGLVS 243
            V+  +A   KKV +    LHPHL R+  I++  F+  +L  Q+  ST ER  K+L L+ 
Sbjct: 282 EVVRGSAQGGKKVNVK-RPLHPHLSRSLEILKTHFQHDVLGVQDPWSTDERAEKLLHLIP 340

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNS--DRKLKYAIEEILLELAYPR 301
           +  +   + ++W          KW  + A+ K   A  S     LK A ++I+LE  YPR
Sbjct: 341 DRTLSESLRRKWDAAPGRASAAKWADIDAVAKSGGAGKSLDTLALKEAKQDIVLEYTYPR 400

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           LDI VSK +NHLLKSPF VHP TG++C
Sbjct: 401 LDIEVSKKLNHLLKSPFVVHPGTGRVC 427


>gi|116203465|ref|XP_001227543.1| hypothetical protein CHGG_09616 [Chaetomium globosum CBS 148.51]
 gi|88175744|gb|EAQ83212.1| hypothetical protein CHGG_09616 [Chaetomium globosum CBS 148.51]
          Length = 501

 Score =  267 bits (683), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 138/328 (42%), Positives = 201/328 (61%), Gaps = 9/328 (2%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELK 66
           S  E+L  YY+R FP+    +WL +  +  ++F+ REFS  L+ D   RY SY + + L+
Sbjct: 121 SSIELLRIYYQRFFPWRYMFQWLNHSPIPSNDFKHREFSLWLHNDAVMRYQSYKTSDMLR 180

Query: 67  KDLIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGAD 123
           +D+++  P++I++G +Y   P+D       + F P  KEL FDID+TDYDD+R CC  A+
Sbjct: 181 QDVLRLMPRRIEIGPVYTADPRDRKTFRNSTAFVPMAKELCFDIDLTDYDDIRTCCDKAN 240

Query: 124 ICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLA 183
           IC KCW++ ++A K+LDTALR+DF +  +LWV+SGRRG+H WVCD+ A AL+   R  LA
Sbjct: 241 ICNKCWKFTTMAIKVLDTALRDDFGYNHILWVYSGRRGVHAWVCDKKARALNDHQRKALA 300

Query: 184 EYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLV 242
            Y  V+T     K       LHPHL R+  I++D F E +LE Q+   T E+   +L  +
Sbjct: 301 SYFEVVTGKEGGKKVNIRRPLHPHLSRSIDILKDHFQEDVLEVQDPWQTPEKADALLQQI 360

Query: 243 SNGDIRAEIEKEWTRIGPGQ-DVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEILLELAYP 300
            N  +R  + K+W    PG+  V KW  +  + +       D K L  A ++I+LE  YP
Sbjct: 361 PNLQLREALRKKWES-SPGRPSVSKWADIDVLAQTDGVAGLDPKDLLDAKQDIVLEHTYP 419

Query: 301 RLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           RLDI VS+ +NHLLKSPF +HP TG++C
Sbjct: 420 RLDIAVSQKLNHLLKSPFVIHPGTGRVC 447


>gi|323454523|gb|EGB10393.1| hypothetical protein AURANDRAFT_58835 [Aureococcus anophagefferens]
          Length = 433

 Score =  267 bits (683), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 143/344 (41%), Positives = 199/344 (57%), Gaps = 24/344 (6%)

Query: 7   PESLTEMLPFYYKRIFPYGPYLRWLFY----------GNLDNFRKREFSFTLNGDIYARY 56
           P+   ++L  YY R+FPY    +WL Y          G      KRE S TL  D+Y RY
Sbjct: 14  PKFDADLLRMYYARLFPYEQMCKWLAYQPHGDASTPVGTGSTLAKRELSLTLADDVYIRY 73

Query: 57  ISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVR 116
             +     +K+ + KR P KID+GA+++  PKDHL    F P+ +ELVFDID++DYDDVR
Sbjct: 74  QCFGDAKAMKELMTKRQPHKIDIGAVFNASPKDHLSIKNFRPEERELVFDIDLSDYDDVR 133

Query: 117 NCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDG 176
            CC GA +C KCW+YM+ AC++ +++LREDF F+ ++WV+SGRRG+HCWV D  +  L  
Sbjct: 134 TCCQGATVCRKCWQYMTCACRVCESSLREDFGFEHIMWVYSGRRGVHCWVGDAESRKLTN 193

Query: 177 RGRSCLAEYMSVLTA--NPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLL---EEQELLST 231
             R  + +Y SV+    N  KK  L    LHP L+RA  ++E  F K +   + Q+LL++
Sbjct: 194 EARLAIIKYFSVVGGNENSAKKTDLQAP-LHPSLERAYKLLEPLFIKHVIPEDGQKLLAS 252

Query: 232 KERQTKVLGLVSNGDIRAEIEKEWTRIGPGQD-VEKWDRLVAIIKHHQAKNSDRKLKYAI 290
            E  +K+L  +   DI  +I K W R G      +KWD L  +       +S +K K A 
Sbjct: 253 PEHWSKLLATLPE-DIADQIAKHWARAGDASTPAQKWDALKGLCASPDRGSSAKKQKRAQ 311

Query: 291 ------EEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
                  E++    YPRLD +VSK  NHLLKSPF  HPKTG++C
Sbjct: 312 VDELWKYEVVFTHCYPRLDENVSKHRNHLLKSPFAAHPKTGRVC 355


>gi|440632317|gb|ELR02236.1| hypothetical protein GMDG_05309 [Geomyces destructans 20631-21]
          Length = 546

 Score =  266 bits (681), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 133/329 (40%), Positives = 207/329 (62%), Gaps = 10/329 (3%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELK 66
           S  E++  +Y+R+FP+ P  +WL +  +  ++F  REF+FTL+ D Y RY S+ +   L+
Sbjct: 128 SDPEVMRSFYQRLFPWRPLFQWLNHSPMPSNDFAHREFAFTLSNDAYLRYQSFPNSELLR 187

Query: 67  KDLIKRCPQKIDLGAIYDICPKDHLQ---HSVFTPKMKELVFDIDMTDYDDVRNCCSGAD 123
           +D+++  P + ++G +Y   P+D       + F P  KEL FDID+TDYDDVR CC  A+
Sbjct: 188 RDVLRLMPSRFEIGPVYSTNPRDRKTLRGSTAFKPIAKELCFDIDLTDYDDVRTCCDKAN 247

Query: 124 ICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLA 183
           IC +CW+++++A K++D ALR+DF F+ ++WV+SGRRG H WVCD+ A  +D   R  +A
Sbjct: 248 ICNRCWQFITMAIKVVDVALRDDFGFKHIMWVYSGRRGAHAWVCDKKARTMDDSRRRAIA 307

Query: 184 EYMSVLT--ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLG 240
            Y+ V+   A   KKV +    LHPHL R+   ++  F+  +LE+Q+  +T+E+  ++L 
Sbjct: 308 GYLEVIKGGAQSGKKVNIKR-PLHPHLARSLETLKSHFQADILEDQDPWATQEQADRLLQ 366

Query: 241 LVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEILLELAY 299
           L+ +  +   + K+W          KW  + A+ K   +K+ D K L  A ++I+LE  Y
Sbjct: 367 LLPDRTLNESLRKKWDSAPGRSSASKWADIDALAKTGASKSLDPKALLEAKQDIVLEYTY 426

Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           PRLDI VSK +NHLLKSPF VHP TG++C
Sbjct: 427 PRLDIEVSKKLNHLLKSPFVVHPGTGRVC 455


>gi|302418752|ref|XP_003007207.1| DNA primase small subunit [Verticillium albo-atrum VaMs.102]
 gi|261354809|gb|EEY17237.1| DNA primase small subunit [Verticillium albo-atrum VaMs.102]
          Length = 495

 Score =  266 bits (681), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 134/326 (41%), Positives = 203/326 (62%), Gaps = 10/326 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E++  +Y+R+FP+    +WL +     ++F  REF+FTL  D Y RY S+ S + L+KD+
Sbjct: 86  EIMKLFYQRLFPWRQLFQWLNHSPTPTNDFAHREFAFTLQNDAYLRYQSFPSHDLLRKDI 145

Query: 70  IKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++  P + ++G +Y   P+D       S F P  KEL FDID+TDYDD+R CC  A+IC 
Sbjct: 146 LRLMPSRFEIGPVYTTNPRDRKTLRSSSAFKPLAKELCFDIDLTDYDDIRTCCDKANICI 205

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW+++++A K++D ALR+DF F+ ++WV+SGRRG H WVCD+ A  +  + R  +A Y+
Sbjct: 206 KCWQFITMAIKVVDVALRDDFGFKHIMWVYSGRRGAHAWVCDKKARTMPDQMRRAIAGYL 265

Query: 187 SVLT--ANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVS 243
            V+   A   KKV L    LHPHL R+   ++  F E +LE Q+  +T ER  ++L L+ 
Sbjct: 266 EVIKGGAQNSKKVNL-WRPLHPHLTRSLETLKTHFQEDVLETQDPWATAERAERLLQLLP 324

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLELAYPRL 302
           + ++   + K+W          KW  +  + +   +K+ D R L+ A ++I+LE  YPRL
Sbjct: 325 DKNLNEALRKKWDASPGRSSTSKWADIDTVARSGASKSLDARALREAKQDIVLEYTYPRL 384

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           DI VSK +NHLLKSPF VHP TG++C
Sbjct: 385 DIEVSKKLNHLLKSPFVVHPGTGRVC 410


>gi|346976783|gb|EGY20235.1| DNA primase small subunit [Verticillium dahliae VdLs.17]
          Length = 495

 Score =  266 bits (680), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 134/326 (41%), Positives = 203/326 (62%), Gaps = 10/326 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E++  +Y+R+FP+    +WL +     ++F  REF+FTL  D Y RY S+ S + L+KD+
Sbjct: 86  EIMKLFYQRLFPWRQLFQWLNHSPTPTNDFAHREFAFTLQNDAYLRYQSFPSHDLLRKDV 145

Query: 70  IKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++  P + ++G +Y   P+D       S F P  KEL FDID+TDYDD+R CC  A+IC 
Sbjct: 146 LRLMPSRFEIGPVYTTNPRDRKTLRSSSAFKPLAKELCFDIDLTDYDDIRTCCDKANICI 205

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW+++++A K++D ALR+DF F+ ++WV+SGRRG H WVCD+ A  +  + R  +A Y+
Sbjct: 206 KCWQFITMAIKVVDVALRDDFGFKHIMWVYSGRRGAHAWVCDKKARTMPDQMRRAIAGYL 265

Query: 187 SVLT--ANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVS 243
            V+   A   KKV L    LHPHL R+   ++  F E +LE Q+  +T ER  ++L L+ 
Sbjct: 266 EVIKGGAQNSKKVNL-WRPLHPHLTRSLETLKTHFQEDVLETQDPWATAERAERLLQLLP 324

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLELAYPRL 302
           + ++   + K+W          KW  +  + +   +K+ D R L+ A ++I+LE  YPRL
Sbjct: 325 DKNLNEALRKKWDASPGRSSTSKWADIDTVARSGASKSLDARALREAKQDIVLEYTYPRL 384

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           DI VSK +NHLLKSPF VHP TG++C
Sbjct: 385 DIEVSKKLNHLLKSPFVVHPGTGRVC 410


>gi|358385709|gb|EHK23305.1| hypothetical protein TRIVIDRAFT_169007 [Trichoderma virens Gv29-8]
          Length = 521

 Score =  266 bits (680), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 136/331 (41%), Positives = 205/331 (61%), Gaps = 10/331 (3%)

Query: 7   PESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNE 64
           P S  E++  +Y+R+FP+    +WL +     ++F  REF+FTL  D Y RY S+ + + 
Sbjct: 105 PASDPEVMRSFYQRLFPWRQLFQWLNHSPTPTNDFGNREFAFTLQNDAYLRYQSFATADL 164

Query: 65  LKKDLIKRCPQKIDLGAIYDICPKDHL---QHSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
           L+KD+++  P + ++G +Y   P+D     + S F P  KEL FDID+TDYDD+R CC  
Sbjct: 165 LRKDVLRLMPSRFEIGPVYTTNPRDRKSLHKSSAFKPLSKELCFDIDLTDYDDIRTCCDK 224

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
           A IC KCW++M++A K++D ALR+DF F  ++WV+SGRRG H WVCD+ A ++D + R  
Sbjct: 225 ATICNKCWQFMTMAIKVVDIALRDDFGFNHIMWVYSGRRGAHAWVCDKKARSMDDQKRRA 284

Query: 182 LAEYMSVLT--ANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKV 238
           +A Y+ V+   ++  KKV +    LHPHL R+  I++  F E +L  Q+   T E+  K+
Sbjct: 285 IANYLEVIKGGSHSGKKVNVKR-PLHPHLSRSLDILKTHFQEDVLAVQDPWGTDEQAQKL 343

Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEILLEL 297
           L L+ +  +   + ++W          KW  + A+ K   +K+ D K L  A ++I+LE 
Sbjct: 344 LQLLPDRTLNDSLRRKWEAAPGRSSTSKWADIDAVAKTGASKHLDAKGLLEAKQDIVLEY 403

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            YPRLDI VSK +NHLLKSPF VHP TG++C
Sbjct: 404 TYPRLDIEVSKKLNHLLKSPFVVHPGTGRVC 434


>gi|150864059|ref|XP_001382746.2| p48 polypeptide of DNA primase [Scheffersomyces stipitis CBS 6054]
 gi|149385315|gb|ABN64717.2| p48 polypeptide of DNA primase [Scheffersomyces stipitis CBS 6054]
          Length = 437

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 135/330 (40%), Positives = 198/330 (60%), Gaps = 17/330 (5%)

Query: 16  FYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRC 73
           F+YKR+ P+    +WL +      +F  REF++     +Y RYISY++ ++ K  ++   
Sbjct: 3   FFYKRLLPFKHIFQWLSHSPKPTKDFTMREFAYEHRSGVYQRYISYDNADDFKNHVVNSN 62

Query: 74  PQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRY 131
           P + ++GA+Y + PK+   L  S + P  KELVFDIDMTDYDD+R CC G DIC KCWR+
Sbjct: 63  PTRFEVGAVYSVNPKERKFLPKSAYKPVSKELVFDIDMTDYDDIRTCCQGTDICTKCWRF 122

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTA 191
           + +A KI+D ALREDF F+ L+WVFSGRRG HCWV D  A  L+   R  + EYM VL A
Sbjct: 123 IQVAAKIIDRALREDFGFEHLIWVFSGRRGAHCWVSDPRARNLEEGTRRAIVEYMDVLGA 182

Query: 192 NPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQE-LLSTKE---------RQTKVLG 240
              KK+       HPH++R+  I++ +F K +LEEQE  L+T           +  ++L 
Sbjct: 183 KQTKKLLNLKKPFHPHVERSFNIVKQEFAKIILEEQEPWLTTPSLADDDKAWTQTEELLS 242

Query: 241 LVSNGDIRAEIEKEW-TRIGPGQDVEKWDRLVAIIKHH-QAKNSDRKLKYAIEEILLELA 298
            + +  +++E+  +W   +       KW+ +  + K   +++    +L  A +EI+L   
Sbjct: 243 FIPDNTLQSELRAKWKNSLSLSTSRSKWEDINVLAKTSLKSQVQVSQLNEAKKEIILYYM 302

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           YPRLDI VS+ V HLLKSPFC+HP TG +C
Sbjct: 303 YPRLDIEVSRQVIHLLKSPFCIHPGTGNVC 332


>gi|159485842|ref|XP_001700953.1| primase subunit of DNA polymerase alpha [Chlamydomonas reinhardtii]
 gi|158281452|gb|EDP07207.1| primase subunit of DNA polymerase alpha [Chlamydomonas reinhardtii]
          Length = 458

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 140/349 (40%), Positives = 202/349 (57%), Gaps = 29/349 (8%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--------FRKREFSFTLNGDIYARYISYN 60
           S+ E +P YY ++FP    ++WL YGN           F +REF FTL GDI+ RY ++ 
Sbjct: 21  SVQEAMPTYYAKLFPTQHMVKWLSYGNDSKHAQADSHFFNRREFCFTLQGDIFVRYQAFK 80

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSV-FTPKMKELVFDIDMTDYDDVRNCC 119
               L++ +++RCP KID+G +Y   P D  +  V F P+ +ELVFDID+TDYDDVR C 
Sbjct: 81  DGAALQEAILRRCPDKIDIGPVYSANPMDRHKFGVAFHPEERELVFDIDLTDYDDVRTCG 140

Query: 120 SGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGR 179
           SG  IC KCW  MS+A KI+D  LR++F F+ +LWV+SGRRGIHCWVCD +A  L    R
Sbjct: 141 SGGHICGKCWPLMSVAVKIIDKGLRDEFGFKHILWVYSGRRGIHCWVCDPSARQLSDEQR 200

Query: 180 SCLAEYMSVLTANPVKK--VFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQT 236
           S +A + ++   +   K  V L G  +HP ++RA  I+   + + LL  Q+LL    +  
Sbjct: 201 SAVASWFAMYKGHEEGKARVALLGGNMHPAVERAAGILRSAWVQTLLPAQQLLEDGPQCE 260

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQ-------DVEKWDRLVAIIKHHQAKNSDRK---- 285
            +L  +    +   + K+WT     +       +V +W  L   +     +   +K    
Sbjct: 261 ALLRYLPEEGLVETVRKKWTEASRSRNAGNMDVNVVRWRALEEAVNERVREERSKKGVVN 320

Query: 286 ------LKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
                 L+  ++EI++  AYPRLD+ VSK +NHLLK+PFCVHPKTGK+C
Sbjct: 321 FKVLGPLERCVDEIIMAHAYPRLDMEVSKKMNHLLKAPFCVHPKTGKVC 369


>gi|302915415|ref|XP_003051518.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732457|gb|EEU45805.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 493

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 140/329 (42%), Positives = 210/329 (63%), Gaps = 10/329 (3%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELK 66
           S  E++  +Y+R+FP+    +WL +     ++F  REF+FTL+ D Y RY S+ + + L+
Sbjct: 83  SDPEVMRSFYQRLFPWRYLFQWLNHSPTPTNDFGNREFAFTLSNDAYLRYQSFPTADMLR 142

Query: 67  KDLIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGAD 123
           KD+++  P + ++G +Y   P+D    ++ S F P  KEL FDID+TDYDDVR CC  A+
Sbjct: 143 KDVLRLMPSRFEIGPVYTTNPRDRKTLVKSSGFKPLAKELCFDIDLTDYDDVRTCCDKAN 202

Query: 124 ICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLA 183
           IC KCW++M++A K+LD ALREDF F+ ++WV+SGRRG H WVCD+   ++D + R  +A
Sbjct: 203 ICNKCWQFMTMAIKVLDAALREDFGFKHIMWVYSGRRGAHAWVCDKKVRSMDDQKRRAIA 262

Query: 184 EYMSVLT--ANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLG 240
            Y+ V+   A   KKV +    LHPHL R+  I++  F E +L+ Q+  S+ E+  K+L 
Sbjct: 263 GYLEVVKGGAQSGKKVNVRR-PLHPHLARSLEILKTHFQEDVLDVQDPWSSPEQAEKLLQ 321

Query: 241 LVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLELAY 299
           L+ N ++   + ++W          KW  + A+ K   +KN D R+L  A ++I+LE  Y
Sbjct: 322 LLPNQNLNESLRRKWDAAPGRASASKWADIDAVAKSGASKNLDARQLLEAKQDIVLEYTY 381

Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           PRLDI VSK +NHLLKSPF VHP TG++C
Sbjct: 382 PRLDIEVSKKLNHLLKSPFVVHPGTGRVC 410


>gi|449299928|gb|EMC95941.1| hypothetical protein BAUCODRAFT_509989 [Baudoinia compniacensis
           UAMH 10762]
          Length = 432

 Score =  265 bits (676), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 133/327 (40%), Positives = 200/327 (61%), Gaps = 7/327 (2%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELK 66
           S  ++L  +Y+R+FP+ P  +WL +G     +F+ REF+F L G  Y RY S+ S +  K
Sbjct: 16  SSPDILRQFYQRLFPFRPLFQWLNHGPTPQPDFQNREFAFVLPGGAYIRYQSFLSADLFK 75

Query: 67  KDLIKRCPQKIDLGAIYDICPKDHLQ---HSVFTPKMKELVFDIDMTDYDDVRNCCSGAD 123
           K  ++  P++ ++G  Y I P+D  Q    S F P MKELVFDIDMTDYD +R CCS A 
Sbjct: 76  KQCVQMTPERFEIGPQYSINPRDRKQLRKASSFRPVMKELVFDIDMTDYDSIRTCCSKAA 135

Query: 124 ICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLA 183
           IC KCW ++ +A K++DTALREDF FQ +LWV+SGRRG H W+ D+ A  +D   R  LA
Sbjct: 136 ICNKCWHFIIMAIKVVDTALREDFGFQHILWVYSGRRGAHAWISDKRAREMDDAKRKALA 195

Query: 184 EYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFE-KLLEEQELLSTKERQTKVLGLV 242
            Y+ +  +    K       LHPH+ R+  ++   F+ ++L EQ+   + E+  +++ L+
Sbjct: 196 GYLVLAMSGEQGKKISIKRPLHPHVDRSLKVLNPYFQDEVLAEQDPWQSAEQAERLIRLL 255

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKH-HQAKNSDRKLKYAIEEILLELAYPR 301
            + D+ A ++K+W  +      +KW  + A+ +  H +  S ++L    ++I LE  YPR
Sbjct: 256 PDKDLTAALQKKWDSMPGRSSNQKWADIDAVAEAGHLSTLSAKQLVDVKQDIRLEYTYPR 315

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           LD  VSK +NHLLKSPF +HP TG++C
Sbjct: 316 LDAEVSKKLNHLLKSPFVIHPGTGRVC 342


>gi|453084772|gb|EMF12816.1| DNA primase small subunit [Mycosphaerella populorum SO2202]
          Length = 450

 Score =  265 bits (676), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 135/330 (40%), Positives = 199/330 (60%), Gaps = 11/330 (3%)

Query: 6   DPESLTEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPN 63
           +PE+L +    YY R+ P+    +WL +      +F+ REFSF L  +   RY+S+ S +
Sbjct: 40  EPETLKQ----YYSRLCPFRSLFQWLNHSATPQPDFQNREFSFWLPENRVIRYLSFPSAD 95

Query: 64  ELKKDLIKRCPQKIDLGAIYDICPKDHLQ---HSVFTPKMKELVFDIDMTDYDDVRNCCS 120
            L+K  ++  P++ ++G  Y+I PKD       S F P MKELVFDIDMTDYD +R CCS
Sbjct: 96  LLRKQCVQMAPERFEIGPQYNINPKDRKSLKSASKFKPVMKELVFDIDMTDYDPIRTCCS 155

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           G  IC+KCWR++ +A K++DTALREDF FQ ++WV+SGRRG H W+ D+ A  ++   R 
Sbjct: 156 GTKICKKCWRFIVMAIKVIDTALREDFGFQHIMWVYSGRRGAHAWISDKRAREMNDSKRK 215

Query: 181 CLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVL 239
            +A Y+ VL  N   K  L    LHPH++R+  I+   F E +L EQ+     ER  K+L
Sbjct: 216 AVANYLEVLKGNENSKRMLRRRPLHPHIERSLNILTPYFKEDILAEQDPWQEDERIEKLL 275

Query: 240 GLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN-SDRKLKYAIEEILLELA 298
            L+ +  + + ++K+W         +KW  + A+ +       S ++L  A +++ LE  
Sbjct: 276 SLIPDEKLTSALKKKWDSASNRTSTQKWSDIDALAEAGSLSTLSTKQLVEAKQDVRLEYT 335

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           YPRLD  VSK +NHLLKSPF +HP TG++C
Sbjct: 336 YPRLDAEVSKKLNHLLKSPFVIHPGTGRVC 365


>gi|452981791|gb|EME81551.1| hypothetical protein MYCFIDRAFT_198238 [Pseudocercospora fijiensis
           CIRAD86]
          Length = 450

 Score =  265 bits (676), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 135/329 (41%), Positives = 199/329 (60%), Gaps = 10/329 (3%)

Query: 6   DPESLTEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPN 63
           DP++L +    YY R+ P+    +WL +      +F+ REFSF L  +   RY+++ S +
Sbjct: 41  DPDTLKQ----YYGRLCPFRELFQWLNHSATPQPDFQNREFSFWLPENRVIRYLAFPSAD 96

Query: 64  ELKKDLIKRCPQKIDLGAIYDICPKDHL---QHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
            L+K+ ++  P++ ++G  Y I PKD     + S F P MKELVFDIDMTDYD +R CCS
Sbjct: 97  LLRKECVQMAPERFEIGPQYSINPKDRKTLKKASAFKPVMKELVFDIDMTDYDPIRTCCS 156

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           GA IC KCW+++ +A K++DTALREDF FQ ++WV+SGRRG H W+ D+ A  +D   R 
Sbjct: 157 GAKICIKCWQFIVMAIKVVDTALREDFGFQHIMWVYSGRRGAHAWISDKRAREMDDSKRK 216

Query: 181 CLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVL 239
            +A Y+ V+  N   K  L    LHPHL+R+  I+   F K +L EQ+   ++ER  K+L
Sbjct: 217 AIANYLDVVKGNENSKRSLFRRPLHPHLERSLRILNPYFTKDVLAEQDPWQSEERSEKLL 276

Query: 240 GLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAY 299
            L+ +  + A ++K+W         +KW  +  + +        R+L    ++I LE  Y
Sbjct: 277 ALLQDQTLTAALKKKWDSSADRSSSQKWADIDTLAEAGHLSMDPRRLVDNKQDIRLEYTY 336

Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           PRLD  VSK +NHLLKSPF +HP TG++C
Sbjct: 337 PRLDAEVSKKLNHLLKSPFVIHPGTGRVC 365


>gi|336273220|ref|XP_003351365.1| hypothetical protein SMAC_03671 [Sordaria macrospora k-hell]
 gi|380092886|emb|CCC09639.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 568

 Score =  264 bits (675), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 140/329 (42%), Positives = 208/329 (63%), Gaps = 13/329 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E++  +Y+R+FP+    +WL +     ++F  REF+FTL  D Y RY S+ + + L+KD+
Sbjct: 149 EVMRTFYQRLFPWRYLFQWLNHSPTPTNDFGHREFAFTLQNDAYLRYQSFATSDLLRKDV 208

Query: 70  IKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++  P + ++G +Y   P+D       S F P  KEL FDID+TDYDD+R CC  A+IC+
Sbjct: 209 LRLMPSRFEIGPVYTANPRDRKTLRNSSAFRPLSKELCFDIDLTDYDDIRTCCDKANICQ 268

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           +CW+++++A K++DTALREDF F+ ++WV+SGRRG H WVCD+ A ALD + R  +A Y+
Sbjct: 269 RCWQFITMAIKVVDTALREDFGFKHIMWVYSGRRGAHAWVCDKKARALDDQKRRAIAGYL 328

Query: 187 SVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLVS 243
            V+   A   KKV L    LHPHL R+  I++  F+  +LE Q+   T+E+Q K+L L+ 
Sbjct: 329 EVIRGGAQSGKKVNLRRP-LHPHLVRSLNILKQHFQADVLEAQDPWRTEEQQEKLLALLP 387

Query: 244 NGDIR--AEIEKEWTRIGPGQDVEKWDRLVAIIKHH-QAKNSDRK-LKYAIEEILLELAY 299
           +   +  + +  +W        + KW  +  + K    AKN D K L  A ++I+LE  Y
Sbjct: 388 SDQKQLISALRNKWASSPDRPSILKWADIDTVAKTSMTAKNFDTKNLLDAKQDIVLEHTY 447

Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           PRLDI VSK +NHLLKSPF VHP TG++C
Sbjct: 448 PRLDIEVSKKLNHLLKSPFVVHPGTGRVC 476


>gi|400601699|gb|EJP69324.1| eukaryotic and archaeal DNA primase small subunit [Beauveria
           bassiana ARSEF 2860]
          Length = 512

 Score =  264 bits (674), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 135/327 (41%), Positives = 202/327 (61%), Gaps = 12/327 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E++  +Y+R+FP+    +WL +     ++F  REF+FTL  D+Y RY S+ + + L+KD+
Sbjct: 103 EVMRSFYQRLFPWRQLFQWLNHSPTPTNDFGHREFAFTLQNDVYLRYQSFATADLLRKDV 162

Query: 70  IKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++  P + ++G +Y   P+D       S F P  KEL FDID+TDYDD+R CC  A+IC 
Sbjct: 163 LRLLPSRFEIGPVYSTNPRDRKTLRNSSAFKPLAKELCFDIDLTDYDDIRTCCDKANICN 222

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW++M++A K++D ALR+DF FQ ++WV+SGRRG H WVCD+ A  +D + R  +A Y+
Sbjct: 223 KCWQFMTMAIKVIDVALRDDFGFQHIMWVYSGRRGAHAWVCDKKARGMDDQKRKAIAGYL 282

Query: 187 SVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVS 243
            V+   A   KKV +    LHPH+ R+  I++  F E +L  Q   +  +R   +L L+ 
Sbjct: 283 EVIRGGAQSGKKVNVRR-PLHPHIARSLEILKSHFQEDVLTVQNPWAADDRFDALLQLLP 341

Query: 244 NGDIRAEIEKEWTRIGPGQ-DVEKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLELAYPR 301
           +  +   +   W    PG+    KW  +  + K   +K+ D R LK A ++I+LE  YPR
Sbjct: 342 DRTLNESLRHRWN-ASPGRASTSKWADIDTLAKTGASKSLDARALKEAKQDIVLEYTYPR 400

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           LDI VSK +NHLLKSPF VHP TG++C
Sbjct: 401 LDIEVSKKLNHLLKSPFVVHPGTGRVC 427


>gi|392589135|gb|EIW78466.1| prim-pol domain-containing protein [Coniophora puteana RWD-64-598
           SS2]
          Length = 405

 Score =  264 bits (674), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 141/338 (41%), Positives = 198/338 (58%), Gaps = 16/338 (4%)

Query: 1   MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYIS 58
           MA   D E   E++  +Y+ ++P+     WL  G +    F +REF+FTL GD+Y RY S
Sbjct: 1   MALDSDNEVTPEVMLAFYRLLYPFHSLFTWLNQGQIPTKLFTQREFAFTLAGDVYLRYHS 60

Query: 59  YNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVR 116
           + S  ELKK ++   P + ++G +Y   PKD   ++ S FTP ++ELVFDIDMTDYD +R
Sbjct: 61  FMSAEELKKQVLAFNPTRFEIGPMYSARPKDRKTVRPSAFTPLLRELVFDIDMTDYDAIR 120

Query: 117 NCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDG 176
            CCS ADIC +CW +++ A ++LDT LRE F F+ +LWV+SGRRGIH W+ D  AL L  
Sbjct: 121 TCCSSADICARCWAFIAAAVRVLDTTLREQFGFRHMLWVYSGRRGIHLWISDADALELTD 180

Query: 177 RGRSCLAEYMSVLTAN-----PVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLS 230
             R  L   ++V+         V   F     L P L  A+  + D+F E +L  Q+  +
Sbjct: 181 EQRRALVASLTVIEGGKDMHKKVNVRFTKQSPLPPALWGARETLNDRFGELILRNQDCFA 240

Query: 231 TKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAI 290
           ++E    +L LVS+G I   + +EWT       ++KW RL  +     AK S        
Sbjct: 241 SQEGWEALLRLVSDGGIAETLREEWTG-SKISSIDKWLRLREL-----AKGSKSLTSAVF 294

Query: 291 EEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           E+ILL+  YPR+D  VSK  NHLLK+PFCVHPKTG++C
Sbjct: 295 EDILLQYTYPRIDAEVSKHRNHLLKAPFCVHPKTGRVC 332


>gi|390598919|gb|EIN08316.1| prim-pol domain-containing protein [Punctularia strigosozonata
           HHB-11173 SS5]
          Length = 415

 Score =  263 bits (673), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 130/338 (38%), Positives = 200/338 (59%), Gaps = 10/338 (2%)

Query: 1   MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYIS 58
           MA   D +   E++  YY+R++P+    RWL + +    +F  REF+FTL GD+Y RY S
Sbjct: 1   MAMSSDSDVSPEVMRTYYRRLYPFDALFRWLNHAHNPTKSFTHREFAFTLQGDVYMRYQS 60

Query: 59  YNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSV---FTPKMKELVFDIDMTDYDDV 115
           + +  +LKK      P + ++G +Y   PKD         F P+ +ELVFDIDMTDYD +
Sbjct: 61  FQTAEDLKKQACSLNPTRFEIGPVYSAKPKDRKTAQATGKFAPERRELVFDIDMTDYDSI 120

Query: 116 RNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALD 175
           R CCSGA IC +CW++++ A ++LD A+R+ F ++ LLWV+SGRRGIH WV D+ A+ L 
Sbjct: 121 RTCCSGAAICARCWKFIAAAVRVLDEAIRDQFGYEHLLWVYSGRRGIHLWVSDKEAIELT 180

Query: 176 GRGRSCLAEYMSVLTANPVK----KVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLS 230
              R  +  +++V+T +  +     V L    L P L++A   + + F +L LE+Q+   
Sbjct: 181 DDQRKAVVNWLTVITGSSQQHKKVNVRLGSKPLPPSLQQALPTLAETFSELILEDQDCFG 240

Query: 231 TKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAI 290
           + +    +L LV +  +  +++++WTR       +KW      I   +       LK A+
Sbjct: 241 STQGWEALLMLVPDKSVVEKLQEQWTRNPDRSSGDKWSDFKKAINGTKGTPRYNTLKAAM 300

Query: 291 EEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           E+I++E  YPRLD  VSK  NHLLK+PFC+HPKTG++C
Sbjct: 301 EDIIIEYTYPRLDAEVSKHRNHLLKAPFCIHPKTGRVC 338


>gi|46123923|ref|XP_386515.1| hypothetical protein FG06339.1 [Gibberella zeae PH-1]
          Length = 498

 Score =  263 bits (673), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 139/327 (42%), Positives = 209/327 (63%), Gaps = 12/327 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E++  +Y+R+FP+    +WL +     ++F  REF+FTL  D Y RY S+ + + L+KD+
Sbjct: 92  EVMRSFYQRLFPWRYLFQWLNHSPTPTNDFGNREFAFTLQNDAYLRYQSFPTADTLRKDV 151

Query: 70  IKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++  P + ++G +Y   P+D       S F P  KEL FDID+TDYDD+R CC  A+IC 
Sbjct: 152 LRLMPSRFEIGPVYTTNPRDRKTLRNSSAFKPLAKELCFDIDLTDYDDIRTCCDKANICN 211

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW++M++A K++D ALREDF F+ ++WV+SGRRG H WVCD+   ++D + R  +A Y+
Sbjct: 212 KCWQFMTMAIKVVDVALREDFGFKHIMWVYSGRRGAHAWVCDKKVRSMDDQKRRAIAGYL 271

Query: 187 SVLT--ANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVS 243
            V+   A   KKV +    LHPHL R+  I++  F E +LE Q+  ++ E+  K+L L+ 
Sbjct: 272 EVVKGGAQSGKKVNVRR-PLHPHLARSLEILKTHFQEDVLEVQDPWASPEQSEKLLQLLP 330

Query: 244 NGDIRAEIEKEWTRIGPGQ-DVEKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLELAYPR 301
           N ++   + ++W    PG+    KW  + A+ K   +KN D R+L  A ++I+LE  YPR
Sbjct: 331 NQNLNESLRRKWD-AAPGRPSTSKWADIDAVAKSGASKNLDARQLLEAKQDIVLEYTYPR 389

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           LDI VSK +NHLLKSPF VHP TG++C
Sbjct: 390 LDIEVSKKLNHLLKSPFVVHPGTGRVC 416


>gi|342883649|gb|EGU84103.1| hypothetical protein FOXB_05401 [Fusarium oxysporum Fo5176]
          Length = 478

 Score =  263 bits (673), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 137/326 (42%), Positives = 206/326 (63%), Gaps = 10/326 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E++  +Y+R+FP+    +WL +     ++F  REF+FTL  D Y RY S+ + + L+KD+
Sbjct: 93  EVMRSFYQRLFPWRYLFQWLNHSPTPTNDFGNREFAFTLQNDAYLRYQSFPTADMLRKDV 152

Query: 70  IKRCPQKIDLGAIYDICPKDHLQ---HSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++  P + ++G +Y   P+D  Q    S F P  KEL FDID+TDYDD+R CC  A+IC 
Sbjct: 153 LRLMPSRFEIGPVYTTNPRDRKQLRNSSAFKPLAKELCFDIDLTDYDDIRTCCDKANICN 212

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW++M++A K++D ALREDF F+ ++WV+SGRRG H WVCD    ++D + R  +A Y+
Sbjct: 213 KCWQFMTMAIKVVDVALREDFGFKHIMWVYSGRRGAHAWVCDRKVRSMDDQKRRAIAGYL 272

Query: 187 SVLT--ANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVS 243
            V+   A   KKV +    LHPHL R+  I++  F E +L+ Q+  ++ E+  K+L L+ 
Sbjct: 273 EVVKGGAQSGKKVNVRR-PLHPHLARSLEILKTHFQEDVLDVQDPWASAEQSEKLLQLLP 331

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLELAYPRL 302
           N ++   + ++W          KW  + A+ K   +KN D R+L  A ++I+LE  YPRL
Sbjct: 332 NQNLNESLRRKWDAAPGRASASKWADIDAVAKSGASKNLDARQLLEAKQDIVLEYTYPRL 391

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           DI VSK +NHLLKSPF VHP TG++C
Sbjct: 392 DIEVSKKLNHLLKSPFVVHPGTGRVC 417


>gi|402222043|gb|EJU02110.1| prim-pol domain-containing protein [Dacryopinax sp. DJM-731 SS1]
          Length = 412

 Score =  263 bits (672), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 139/331 (41%), Positives = 200/331 (60%), Gaps = 15/331 (4%)

Query: 4   KYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNS 61
           +YDP S   M+ FY KR+FPY P+  WL + +  +  F  REF+FTL GD+Y RY S+ +
Sbjct: 7   EYDPSSPDVMMQFY-KRLFPYRPFFHWLNHDHTPSKLFTYREFAFTLAGDVYLRYNSFAN 65

Query: 62  PNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCC 119
             +  ++L +  P + ++GAIY+  P+D   L+     P+M+ELVFDIDMTDYD +R CC
Sbjct: 66  IEDFARELRRLNPSRFEVGAIYNARPRDKRTLRAGALQPQMRELVFDIDMTDYDAIRTCC 125

Query: 120 SGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGR 179
           SG  IC++CW +++ A  +LD+ALR  FD+  LLWV+SGRRGIHCWV D++AL+L    R
Sbjct: 126 SGKGICKRCWAFIAAAVTVLDSALRNQFDYHHLLWVYSGRRGIHCWVSDKSALSLTDDQR 185

Query: 180 SCLAEYMSVLT--ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTK 237
             L  Y+ V+   A  VKKV +   V       +++I+ED        Q+   T+E Q  
Sbjct: 186 KALVGYLEVIKGGAEMVKKVNVRLGVQELGGYFSQVILED--------QKCFDTEEGQET 237

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLEL 297
           +L LV +  I  ++ K W         +K+  L A I     +   + LK A E+I+L+ 
Sbjct: 238 LLSLVPDKTIVGKLRKLWAASPDRTSSQKFKDLNAEISQIGDRKQAQALKQAQEDIMLQY 297

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            YPR+D  VSK  NHLLK+PFC+HP TG++C
Sbjct: 298 LYPRIDAEVSKHRNHLLKAPFCIHPATGRVC 328


>gi|389640911|ref|XP_003718088.1| DNA primase small subunit [Magnaporthe oryzae 70-15]
 gi|351640641|gb|EHA48504.1| DNA primase small subunit [Magnaporthe oryzae 70-15]
          Length = 529

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 132/326 (40%), Positives = 203/326 (62%), Gaps = 10/326 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E++  +Y+R+FP+    +WL +     ++F  REF+FTL  D Y RY S+ + + L+KD+
Sbjct: 114 EVMRSFYQRLFPWRYLFQWLNHSPNPTNDFAHREFAFTLQNDAYLRYQSFTTSDLLRKDV 173

Query: 70  IKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++  P + ++G +Y+  P++       S F P  KEL FDID+TDYDD+R CC  A+IC 
Sbjct: 174 LRLMPSRFEIGPVYNTNPRERKTLRNSSAFKPLAKELCFDIDLTDYDDIRTCCDKANICN 233

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW++M++A K +D ALR+DF F+ ++WV+SGRRG H WVCD+ A  +D + R  +A Y+
Sbjct: 234 KCWQFMTMAIKTVDVALRDDFGFKHIMWVYSGRRGAHAWVCDKKARVMDDQKRRAIAGYL 293

Query: 187 SVLT--ANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVS 243
            V+   A   KKV +    LHPHL R+  +++  F E +L  Q+   ++E+  K+L L+ 
Sbjct: 294 EVVRGGAQSGKKVNVRR-PLHPHLSRSLDVLKGHFQEDVLRAQDPWESEEQAEKLLQLLP 352

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEILLELAYPRL 302
           +  +   + K+W        + KW  +  + K   ++N D K L  A ++I+LE  YPRL
Sbjct: 353 DRTLNDSLRKKWASSPGRSSLSKWADIDTVAKTGASRNLDAKALLEAKQDIVLEYTYPRL 412

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           DI VSK +NHLLKSPF VHP TG++C
Sbjct: 413 DIEVSKKLNHLLKSPFVVHPGTGRVC 438


>gi|367031936|ref|XP_003665251.1| hypothetical protein MYCTH_2315948 [Myceliophthora thermophila ATCC
           42464]
 gi|347012522|gb|AEO60006.1| hypothetical protein MYCTH_2315948 [Myceliophthora thermophila ATCC
           42464]
          Length = 517

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 129/324 (39%), Positives = 200/324 (61%), Gaps = 7/324 (2%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E+L  YY+R FP+    +WL +  +   +F+ REFS  L+ D   RY S+++ +  +KD+
Sbjct: 95  ELLRIYYQRFFPWRYMFQWLNHSPVPTKDFKHREFSLWLHNDAVLRYQSFSTSDLFRKDV 154

Query: 70  IKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++  P++I++G +Y   P+D       S F P  KEL FDID+TDYDD+R CC  A+IC 
Sbjct: 155 LRLMPRRIEIGPVYTADPRDRKTFRTASAFQPIAKELCFDIDLTDYDDIRTCCDMANICH 214

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW++M +A K++DTALREDF +  +LWV+SGRRG+H WVCD+ A  L+ + R  +A Y+
Sbjct: 215 KCWKFMIMAIKVIDTALREDFGYNHILWVYSGRRGVHAWVCDKQARTLEDKHRKAIAAYL 274

Query: 187 SVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLVSNG 245
            V+T     K       LHPHL R+  I++D F+K +LE Q+   + ER   +L  + + 
Sbjct: 275 EVVTGKQGGKRVNLRRPLHPHLSRSIDILKDHFQKDVLETQDPWRSPERAENLLQQIPDH 334

Query: 246 DIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLELAYPRLDI 304
            +R  + K+W          +W  + A+ + + +   D ++L  A ++I++E  YPRLD 
Sbjct: 335 QLREALRKKWESSPGRSSTARWADIDALAQTNASAALDPKELLDAKQDIVIEYTYPRLDT 394

Query: 305 HVSKGVNHLLKSPFCVHPKTGKIC 328
            VS+ +NHLLKSPF +HP TG++C
Sbjct: 395 AVSQKLNHLLKSPFVIHPGTGRVC 418


>gi|310801341|gb|EFQ36234.1| eukaryotic and archaeal DNA primase small subunit [Glomerella
           graminicola M1.001]
          Length = 517

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 134/326 (41%), Positives = 203/326 (62%), Gaps = 10/326 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E++  +Y+R+FP+    +WL +     ++F  REF+FTL  D Y RY S+ + + L+KD+
Sbjct: 107 EVMRSFYQRLFPWRYLFQWLNHSPTPTNDFGHREFAFTLQNDAYLRYQSFATHDLLRKDV 166

Query: 70  IKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++  P + ++G +Y   P+D       S F P  KEL FDID+TDYD++R CC  A+IC 
Sbjct: 167 LRLMPSRFEIGPVYSTNPRDRKTLRNASAFKPLAKELCFDIDLTDYDEIRTCCDKANICI 226

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW+++++A K++D ALR+DF F+ ++WV+SGRRG H WVCD+ A  +  + R  +A Y+
Sbjct: 227 KCWQFITMAIKVVDVALRDDFGFKHIMWVYSGRRGAHAWVCDKKARTMGDQMRRSIAGYL 286

Query: 187 SVLT--ANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVS 243
            V+   A   KKV L    LHPHL R+   ++  F E +LE Q+  ++ ER  ++L L+ 
Sbjct: 287 EVIKGGAQSGKKVNL-WRPLHPHLSRSLETLKSHFQEDVLEAQDPWASNERAERLLQLLP 345

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEILLELAYPRL 302
           + ++   + K+W        V KW  +  + K   +KN D K L  A ++I+LE  YPRL
Sbjct: 346 DKNLNESLRKKWDAAPGRSSVSKWADIDTVAKSGASKNLDAKALLEAKQDIVLEYTYPRL 405

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           DI VSK +NHLLKSPF VHP TG++C
Sbjct: 406 DIEVSKKLNHLLKSPFVVHPGTGRVC 431


>gi|320588292|gb|EFX00761.1| DNA primase subunit [Grosmannia clavigera kw1407]
          Length = 523

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 135/326 (41%), Positives = 200/326 (61%), Gaps = 10/326 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E++  +Y+R+FP+    +WL +     ++F  REF+FTL+ D Y RY S+ +   L+KD+
Sbjct: 105 EVMRSFYQRLFPWRYLFQWLNHSPTPTNDFGHREFAFTLSNDAYLRYQSFPTSELLRKDV 164

Query: 70  IKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++  P + ++G +Y   P+D       S F P  KEL FDID+TDYDDVR CC  A+IC 
Sbjct: 165 LRLMPSRFEIGPVYTTNPRDRKSLSNTSAFRPLAKELCFDIDLTDYDDVRTCCDKANICG 224

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           +CW+++++A K++D ALR+DF FQ +LWV+SGRRG H WVCD  A  LD + R  +A Y+
Sbjct: 225 RCWQFITMAIKVVDVALRDDFGFQHVLWVYSGRRGAHAWVCDRRARTLDDQKRRAIAGYL 284

Query: 187 SVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQFE-KLLEEQELLSTKERQTKVLGLVS 243
            V+   A   KKV +    LHPHL R+  ++   F+  +L+ Q+   T ER  K+L L+ 
Sbjct: 285 EVVRGGAQGGKKVSVRRP-LHPHLARSLRLLAPHFQDDVLQSQDPWDTSERAEKLLQLLP 343

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEILLELAYPRL 302
           +  + A + ++W          KW  +  + K   +K  D K L  A ++++LE  YPRL
Sbjct: 344 DRTLNAALRRKWDAAPGRSSAAKWADIDVVAKTGASKALDAKALLEAKQDVVLEYTYPRL 403

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           DI VSK +NHLLKSPF VHP TG++C
Sbjct: 404 DIEVSKKLNHLLKSPFVVHPGTGRVC 429


>gi|171473960|gb|AAW26809.2| SJCHGC04889 protein [Schistosoma japonicum]
          Length = 442

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 146/350 (41%), Positives = 202/350 (57%), Gaps = 40/350 (11%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNLDN-FRKREFSFTLNGDIYARYISYNSPNELKKDLI 70
           E+L  YYK+IFP   + +WL Y +      KREFSFTLNGDIY RY S++S ++ +K+L+
Sbjct: 2   ELLRIYYKKIFPCDLFAQWLTYNSRSTGLSKREFSFTLNGDIYLRYQSFDSSSDFRKELV 61

Query: 71  KRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCC-----SGAD 123
           K CP KID+GA+Y   PK H  +  S F P+ KELVFDID+TDYD+VR CC     +G+ 
Sbjct: 62  KLCPTKIDIGAVYSNSPKLHRSILSSSFKPEWKELVFDIDLTDYDEVRYCCGDQSATGSP 121

Query: 124 ICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLA 183
           IC +CW     A   +D +LREDF F+ LLWV+SGRRG+HCWVCD +A  LD   R+ + 
Sbjct: 122 ICLRCWPLARSAVLCIDRSLREDFGFRHLLWVYSGRRGVHCWVCDHSARFLDQTSRTAIV 181

Query: 184 EYMSVLTANPVKKVFLTGD----------------VLHPHLKRAKLIIEDQFEK---LLE 224
           EY++++     KK  LT                  + HP +  A  I+  +F      + 
Sbjct: 182 EYLTLVRGGSSKKPVLTAGNYSKSNDLHSHGNIDPLFHPCVDAACNILIPRFTNYCSTVN 241

Query: 225 EQELLSTKERQTKVLGLVSN--GDIRAEIEKEW-TRIGPGQD---VEKWDRLVAIIKHHQ 278
            Q L   + R  K+L  + +   D+R  +  EW T +   ++    ++W+ L    + + 
Sbjct: 242 GQNLFGNRRRLDKLLSFLPDELKDLRERLSGEWLTDVQDSKEEVSTKRWNTLKRFFQENG 301

Query: 279 AKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
             N        ++EI+L   YPRLD +VS GVNHLLKSPFCVHPKTG IC
Sbjct: 302 RTN-------ILKEIVLNYTYPRLDANVSTGVNHLLKSPFCVHPKTGHIC 344


>gi|407924789|gb|EKG17816.1| DNA primase small subunit [Macrophomina phaseolina MS6]
          Length = 486

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 131/326 (40%), Positives = 202/326 (61%), Gaps = 10/326 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E++  +Y+R+FP+    +WL +      +F  REF+FTL  D Y RY ++ + + L+K  
Sbjct: 75  EIMRAFYQRLFPFRYLFQWLNHSPSPSPDFAHREFAFTLQNDAYLRYQAFPTADLLRKQC 134

Query: 70  IKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++  P + ++G +Y   P+D     + + F P  KELVFDIDMTDYD++R CC+GA+IC 
Sbjct: 135 VQMIPSRFEIGPVYSTNPRDRKSLRKATAFKPISKELVFDIDMTDYDEIRTCCTGANICH 194

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
            CW ++++A K++DTAL+EDF F+ +LWV+SGRRG H WVCD+ A  +D + R  +A Y+
Sbjct: 195 SCWSFITMAIKVVDTALKEDFGFKHILWVYSGRRGAHAWVCDKRARDMDDQKRRAIAGYL 254

Query: 187 SVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFE-KLLEEQELLSTKERQTKVLGLVS 243
            +L       KKV +    LHPHL+R+  I+   F+  +L EQ+  ++ E+  ++L L+ 
Sbjct: 255 ELLKGGDQGGKKVNVK-RPLHPHLERSLKILRAYFQTNILLEQDPWASPEKSARLLSLIP 313

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEILLELAYPRL 302
           +  + A ++K+W         +KW  +  +     +   D K LK A ++ILLE  YPRL
Sbjct: 314 DKQLAAALQKKWDSAPSRPSSQKWADIDNLASSGASSTLDPKALKEAKQDILLEYTYPRL 373

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           D  VSK +NHLLKSPF VHP TG++C
Sbjct: 374 DAEVSKKLNHLLKSPFVVHPGTGRVC 399


>gi|312071476|ref|XP_003138626.1| DNA primase [Loa loa]
 gi|307766209|gb|EFO25443.1| DNA primase [Loa loa]
          Length = 414

 Score =  261 bits (666), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 150/350 (42%), Positives = 208/350 (59%), Gaps = 31/350 (8%)

Query: 1   MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYIS 58
           MAD +D   L + LP YY+R+FP+GP  +WL YG     +F+ RE +F    D + RY S
Sbjct: 1   MAD-FDRSLLQQTLPEYYRRLFPFGPLSKWLTYGKDLQVSFQMRELAFIFEDDRHVRYRS 59

Query: 59  YNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           +    E +++L K  PQKID+GA+Y+  PKDH + + F P  +EL+FDID+TDYDD+R C
Sbjct: 60  FEDSTEFERELCKANPQKIDIGAVYNYKPKDHKKFANFRPVERELIFDIDLTDYDDIRTC 119

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS A IC KCWR++ IA  +LD  L+  F F+  LWVFSGRRGIHCWV D AA  L   G
Sbjct: 120 CSKAKICRKCWRWICIAVGVLDHLLQRHFGFKHCLWVFSGRRGIHCWVADAAARKLQNAG 179

Query: 179 RSCLAEYMSVLT-ANPVKKVFLTGDVLHPHLK--RAKLIIEDQFEKLLEEQELLSTKERQ 235
           R  + EY+S++T    V K       +HP L+   + L+      KL+ EQ  +S     
Sbjct: 180 RMAVVEYLSLITGGQKVSKAATKRTFVHPMLEDVYSYLVQSSDVSKLMLEQGWMSNN--- 236

Query: 236 TKVLGLVS--NGDIRAEIEKEWTR-IGPGQDVE----KWDRL-VAIIKHHQA---KN--- 281
               GL+S  +G +  E+EKE T  I   ++V+    +W+ L +   K+ +A   KN   
Sbjct: 237 ----GLMSLLDGCVNEEVEKEITEIIDEVKNVDCLERRWNALRIKFDKYKRAELKKNGIE 292

Query: 282 ----SDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
               +  +  +     +L+ AYPRLD+HVS G+NHLLKSPFCVHP+TG I
Sbjct: 293 LCEVASLQSSFHFRGYVLQHAYPRLDVHVSVGINHLLKSPFCVHPETGLI 342


>gi|431914029|gb|ELK15291.1| DNA primase small subunit [Pteropus alecto]
          Length = 1526

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 134/300 (44%), Positives = 191/300 (63%), Gaps = 13/300 (4%)

Query: 39  FRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVF 96
           F+ REFSFTL  DIY RY S+N+ ++L+K++ K  P KID+GA+Y   P  H  ++   F
Sbjct: 49  FQHREFSFTLKDDIYIRYQSFNNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAF 108

Query: 97  TPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALR-------EDFDF 149
             + KELVFDIDMTDYDDVR CCS ADIC KCW  M++A +I+D AL+       +DF F
Sbjct: 109 QAQEKELVFDIDMTDYDDVRRCCSSADICSKCWTLMTMAIRIIDRALKGKYRQCLKDFGF 168

Query: 150 QLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANP-VKKVFLTGDVLHPHL 208
           +  LWV+SGRRG+HCWVCDE+   L    RS + EY+S++   P VKK     + +HP +
Sbjct: 169 KHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGPDVKKKVHLSEKIHPFV 228

Query: 209 KRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKW 267
           +++  II   FE+  L +Q++L  KE   K+L L    +I ++    + +      +++W
Sbjct: 229 RKSINIINKYFEEYALVDQDILGNKESCNKILALAPE-NILSQDHSLFFQ-NHHSSLQRW 286

Query: 268 DRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           + L  + +      SD+   +   EI+L+  +PRLDI+VSKG+NHLLKSPF VHPKTG+I
Sbjct: 287 EHLKKVARCLNNVKSDKYGPWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVHPKTGRI 346


>gi|380496045|emb|CCF31931.1| eukaryotic and archaeal DNA primase small subunit [Colletotrichum
           higginsianum]
          Length = 496

 Score =  261 bits (666), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 133/326 (40%), Positives = 203/326 (62%), Gaps = 10/326 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E++  +Y+R+FP+    +WL +     ++F  REF+FTL  D Y RY S+ + + L+KD+
Sbjct: 85  EVMRSFYQRLFPWRYLFQWLNHSPSPTNDFAHREFAFTLQNDAYLRYQSFPTHDLLRKDV 144

Query: 70  IKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++  P + ++G +Y   P+D       S F P  KEL FDID+TDYD++R CC  A+IC 
Sbjct: 145 LRLMPSRFEIGPVYSTNPRDRKTLRNASAFKPLAKELCFDIDLTDYDEIRTCCDKANICI 204

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW+++++A K++D ALR+DF F+ ++WV+SGRRG H WVCD+ A  +  + R  +A Y+
Sbjct: 205 KCWQFITMAIKVVDVALRDDFGFKHIMWVYSGRRGAHAWVCDKKARTMGDQLRRSIAGYL 264

Query: 187 SVLT--ANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVS 243
            V+   A   KKV L    LHPH+ R+   ++  F E +LE Q+  ++ ER  ++L L+ 
Sbjct: 265 EVIKGGAQSGKKVNLWR-PLHPHVARSLETLKSHFQEDVLEAQDPWASNERAERLLQLLP 323

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEILLELAYPRL 302
           + ++   + K+W        V KW  +  + K   +KN D K L  A ++I+LE  YPRL
Sbjct: 324 DKNLNESLRKKWDAAPGRSSVSKWADIDTVAKSGASKNLDAKALLEAKQDIVLEYTYPRL 383

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           DI VSK +NHLLKSPF VHP TG++C
Sbjct: 384 DIEVSKKLNHLLKSPFVVHPGTGRVC 409


>gi|402080714|gb|EJT75859.1| DNA primase small subunit [Gaeumannomyces graminis var. tritici
           R3-111a-1]
          Length = 504

 Score =  260 bits (665), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 134/326 (41%), Positives = 203/326 (62%), Gaps = 10/326 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E++  +Y+R+FP+    +WL +     ++F  REF+FTL  D Y RY S+ + + L+KD+
Sbjct: 93  EVMRSFYQRLFPWRYLYQWLNHSPSPTNDFGHREFAFTLQNDAYLRYQSFPTSDHLRKDV 152

Query: 70  IKRCPQKIDLGAIYDICPKDH--LQHSV-FTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++  P + ++G +Y   P+D   L++S  F P  KEL FDID+TDYD++R CC  A+IC 
Sbjct: 153 LRLNPSRFEIGPVYTTNPRDRKTLRNSAAFKPLTKELCFDIDLTDYDEIRTCCDKANICN 212

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           +CW++M++A K +D ALREDF F+ ++WV+SGRRG H WVCD+   ++D + R  +A Y+
Sbjct: 213 RCWKFMTMAIKTVDVALREDFGFRHIMWVYSGRRGAHAWVCDKNVRSMDDQKRRAIAGYL 272

Query: 187 SVLT--ANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVS 243
            V+   A   KKV +    LHPHL R+  I++  F E +L +Q    T E+  K+L L+ 
Sbjct: 273 EVIRGGAQSGKKVNVRR-PLHPHLTRSLDILKTHFQEDVLRDQNPWDTNEQAEKLLQLLP 331

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEILLELAYPRL 302
           +  +   + K+W          KW  + A+ K   ++  D K L  A ++I+LE  YPRL
Sbjct: 332 DRTLNDSLRKKWASSPGRSSASKWADIDAVAKTGASRALDAKALLEAKQDIVLEYTYPRL 391

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           DI VSK +NHLLKSPF VHP TG++C
Sbjct: 392 DIEVSKKLNHLLKSPFVVHPGTGRVC 417


>gi|393212252|gb|EJC97753.1| prim-pol domain-containing protein [Fomitiporia mediterranea
           MF3/22]
          Length = 429

 Score =  260 bits (665), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 137/336 (40%), Positives = 205/336 (61%), Gaps = 14/336 (4%)

Query: 6   DPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPN 63
           D  S  E++  +YKR++P+     WL   +     F  REF+FTL GD+Y RY S+ +  
Sbjct: 5   DDVSAPEVMMAFYKRLYPFKSVFAWLNRQHAPTRLFTHREFAFTLQGDVYIRYNSFTNAE 64

Query: 64  ELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
           +LKK +++  P + ++GA+Y+  P+D   L+     P+ +ELVFDIDMTDYD++R CCSG
Sbjct: 65  DLKKQVVRLNPSRFEIGAVYNARPRDKKTLRAGALHPQQRELVFDIDMTDYDEIRTCCSG 124

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
             IC++CW ++++A KILD +LRE F F+ +LWV+SGRRGIHCWV D+ A+ L    R  
Sbjct: 125 KGICKRCWGFIAVAVKILDQSLREHFGFRHILWVYSGRRGIHCWVSDQEAMYLTDEQRKA 184

Query: 182 LAEYMSVLTANP--VKKV---FLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQ 235
           +  ++ V+       KKV    L G  LHP L+ A LI   +F +L L++Q+  S  E+ 
Sbjct: 185 VMGWLEVVKGGQDMTKKVNVRGLPGRQLHPSLQSALLIARSEFSRLILDDQDCFSGTEQT 244

Query: 236 TKVLGLVS-NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQ--AKNSDRKLKYAIEE 292
             +L L+  N +I++ + K W+        EKWD +   +       K ++  +  A+E+
Sbjct: 245 NILLELLGDNKEIQSRLRKRWSESS-SNSEEKWDDVRREMSQATGGGKETNTPIYRAVED 303

Query: 293 ILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           I+L+  YPRLD  VSK  NHLLK+PFCVHP TG++C
Sbjct: 304 IVLQYTYPRLDAEVSKHRNHLLKAPFCVHPATGRVC 339


>gi|315047580|ref|XP_003173165.1| DNA primase small subunit [Arthroderma gypseum CBS 118893]
 gi|311343551|gb|EFR02754.1| DNA primase small subunit [Arthroderma gypseum CBS 118893]
          Length = 518

 Score =  260 bits (664), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 135/333 (40%), Positives = 202/333 (60%), Gaps = 13/333 (3%)

Query: 4   KYDPESLTEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNS 61
           + DPES++     +Y+R+FP+    +WL +G     +F  REF+FTL  D Y RY S+ +
Sbjct: 87  QVDPESISA----FYQRLFPFKYLFQWLNHGVKPSTDFGNREFAFTLPNDAYLRYQSFQT 142

Query: 62  PNELKKDLIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
            + L KD+++  P + ++G +Y   P+D     +   F P MKELVFDID+TDYDD+R C
Sbjct: 143 ADALHKDVMRLNPSRFEIGPVYSTNPRDRKTLRKPGAFKPIMKELVFDIDLTDYDDIRTC 202

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS A+IC KCW +++++ K++DTALREDF FQ +LWV+SGRRG H WVCD+ A  L    
Sbjct: 203 CSKANICLKCWAFVTMSIKVIDTALREDFGFQHILWVYSGRRGAHAWVCDKKARNLPDDR 262

Query: 179 RSCLAEYMSVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQ 235
           R  +A Y+ V+   +   K+V L    LHPH+ R+   + + F   +L +Q+  S  ++ 
Sbjct: 263 RRAIAGYLEVVRGGSQSGKRVNLKR-PLHPHITRSIDTLREYFASTVLVDQDPFSKPDQA 321

Query: 236 TKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILL 295
            ++L L+ +  +RA ++K+W          KW  + A+ K        + L  A ++I+L
Sbjct: 322 ARLLELLPDKTLRAALQKKWESAPGRSSSSKWADIDAVAKTSSRGLDTKALLEAKQDIVL 381

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           E  YPRLD  VSK + HLLKSPF VHP TG++C
Sbjct: 382 EYTYPRLDAEVSKKLIHLLKSPFVVHPGTGRVC 414


>gi|68467881|ref|XP_722099.1| hypothetical protein CaO19.11513 [Candida albicans SC5314]
 gi|68468198|ref|XP_721938.1| hypothetical protein CaO19.4030 [Candida albicans SC5314]
 gi|46443881|gb|EAL03160.1| hypothetical protein CaO19.4030 [Candida albicans SC5314]
 gi|46444047|gb|EAL03325.1| hypothetical protein CaO19.11513 [Candida albicans SC5314]
          Length = 452

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 129/329 (39%), Positives = 195/329 (59%), Gaps = 14/329 (4%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + FYY+R+ P+    +WL +      +F  REF++     IY RY S+ +  E KK ++ 
Sbjct: 29  MKFYYQRLLPFRYIFQWLSHSPKPTKDFTMREFAYEYRSKIYQRYNSFGTLEEFKKSVVT 88

Query: 72  RCPQKIDLGAIYDICPKD--HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GA+Y I PK+  +L    F P+ KELVFDID+TDYDD+R CC G DIC KCW
Sbjct: 89  ANPTRFEIGAVYKINPKERKNLPKQAFKPESKELVFDIDLTDYDDIRTCCQGTDICCKCW 148

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           +++ +  KI++ ALREDF F+ L+WVFSGRRG HCWV D+ A  LD   R  + +Y+ VL
Sbjct: 149 KFIQVGSKIIEAALREDFGFEHLVWVFSGRRGAHCWVSDKRARELDETSRKAIIDYLDVL 208

Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTK-------VLGL 241
           ++             HPH++R+  I++ +F   +L+EQ+  +T   +TK       +L  
Sbjct: 209 SSKNQNGSLNIKKPFHPHVERSFEIVKKEFLNVILQEQDPWNTTSEETKAWKQVDELLAF 268

Query: 242 VSNGDIRAEIEKEWTRIGPGQDV-EKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLELAY 299
           + N  ++ E++ +W     G    EKWD +  +  +    NS   +L  A ++I++   Y
Sbjct: 269 IPNKALQIELKNKWKGQTFGSTSKEKWDDISTVASNVLKSNSQVAQLTEAKKDIIIYYMY 328

Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           PRLD+ VS+ V HLLKSPFC+HP TG +C
Sbjct: 329 PRLDVQVSRQVIHLLKSPFCIHPGTGNVC 357


>gi|303315415|ref|XP_003067715.1| DNA primase small subunit, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240107385|gb|EER25570.1| DNA primase small subunit, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 520

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 133/328 (40%), Positives = 200/328 (60%), Gaps = 12/328 (3%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYG---NLDNFRKREFSFTLNGDIYARYISYNSPNELKK 67
           TE +  +Y+R+FP+    +WL +G   ++D F  REF+FTL  D Y RY SY +   L+K
Sbjct: 87  TETMYAFYQRLFPFKYLFQWLNHGIKPSVD-FGNREFAFTLQNDAYLRYQSYPTAEGLRK 145

Query: 68  DLIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADI 124
           D+++  P + ++G +Y   P+D     + S F P  KELVFDID+TDYDD+R CC  A+I
Sbjct: 146 DILRLNPSRFEIGPVYSTNPRDRKSLRKSSAFRPVSKELVFDIDLTDYDDIRTCCEKANI 205

Query: 125 CEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAE 184
           C KCW ++++A K++D ALR+DF F+ +LWV+SGRRG H WVCD+ A  L    R  +A 
Sbjct: 206 CPKCWAFVTMAIKVIDRALRDDFGFEHILWVYSGRRGAHAWVCDQRARNLTDERRKAIAG 265

Query: 185 YMSVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGL 241
           Y+ V+   A   K+V L    LHPH++R++ I+   F   +L  Q+  S+ ++  ++L  
Sbjct: 266 YLEVVRGGAQSGKRVNLKR-PLHPHVERSRNILIPYFRSTILNNQDTFSSSDQAARLLQF 324

Query: 242 VSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEILLELAYP 300
           + +  ++  ++K+W          KW  +  + K    ++ D K L  A E+I+LE  YP
Sbjct: 325 IPDKSLKDALQKKWESAPSRGSSSKWSDIDDVAKASGNRDLDTKALLEAKEDIILEYTYP 384

Query: 301 RLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           RLD  VSK + HLLKSPF VHP TG++C
Sbjct: 385 RLDAEVSKKLIHLLKSPFVVHPGTGRVC 412


>gi|320035447|gb|EFW17388.1| DNA primase [Coccidioides posadasii str. Silveira]
          Length = 533

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 133/328 (40%), Positives = 200/328 (60%), Gaps = 12/328 (3%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYG---NLDNFRKREFSFTLNGDIYARYISYNSPNELKK 67
           TE +  +Y+R+FP+    +WL +G   ++D F  REF+FTL  D Y RY SY +   L+K
Sbjct: 100 TETMYAFYQRLFPFKYLFQWLNHGIKPSVD-FGNREFAFTLQNDAYLRYQSYPTAEGLRK 158

Query: 68  DLIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADI 124
           D+++  P + ++G +Y   P+D     + S F P  KELVFDID+TDYDD+R CC  A+I
Sbjct: 159 DILRLNPSRFEIGPVYSTNPRDRKSLRKSSAFRPVSKELVFDIDLTDYDDIRTCCEKANI 218

Query: 125 CEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAE 184
           C KCW ++++A K++D ALR+DF F+ +LWV+SGRRG H WVCD+ A  L    R  +A 
Sbjct: 219 CPKCWAFVTMAIKVIDRALRDDFGFEHILWVYSGRRGAHAWVCDQRARNLTDERRKAIAG 278

Query: 185 YMSVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGL 241
           Y+ V+   A   K+V L    LHPH++R++ I+   F   +L  Q+  S+ ++  ++L  
Sbjct: 279 YLEVVRGGAQSGKRVNLKR-PLHPHVERSRNILIPYFRSTILNNQDTFSSSDQAARLLQF 337

Query: 242 VSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEILLELAYP 300
           + +  ++  ++K+W          KW  +  + K    ++ D K L  A E+I+LE  YP
Sbjct: 338 IPDKSLKDALQKKWESAPSRGSSSKWSDIDDVAKASGNRDLDTKALLEAKEDIILEYTYP 397

Query: 301 RLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           RLD  VSK + HLLKSPF VHP TG++C
Sbjct: 398 RLDAEVSKKLIHLLKSPFVVHPGTGRVC 425


>gi|332206764|ref|XP_003252464.1| PREDICTED: DNA primase small subunit [Nomascus leucogenys]
          Length = 392

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 138/304 (45%), Positives = 197/304 (64%), Gaps = 9/304 (2%)

Query: 30  WLFYGNLDN-FRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPK 88
           ++++  + N F+ REFSFTL  DIY RY S+N+ ++L+K++ K  P KID+GA+Y   P 
Sbjct: 2   YIYFAVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEKEMQKMNPYKIDIGAVYSHRPN 61

Query: 89  DH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALRED 146
            H  ++   F  + KELVFDIDMTDYDDVR CCS ADIC KCW  M +A +I+D AL+ED
Sbjct: 62  QHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCWTLMIMAIRIIDRALKED 121

Query: 147 FDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLT-ANPVKKVFLTGDVLH 205
           F F+  LWV+SGRRG+HCWVCDE+   L    RS + EY+S++     VKK     + +H
Sbjct: 122 FGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQEVKKKVHLSEKIH 181

Query: 206 PHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDV 264
           P ++++  II+  FE+  L  Q++L  KE   K+L LV    I  E+++ + +      +
Sbjct: 182 PFIRKSINIIKKYFEEYALVNQDILENKESWDKILALVPET-IHDELQQNFQK--SHSSL 238

Query: 265 EKWDRLVAIIKHHQAKNSDRKLKYAIE-EILLELAYPRLDIHVSKGVNHLLKSPFCVHPK 323
           ++W+ L  +    Q    + K    +E EI+L+  +PRLDI+VSKG+NHLLKSPF VHPK
Sbjct: 239 QRWEHLKKVASRCQNNIKNDKYGPWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVHPK 298

Query: 324 TGKI 327
           TG+I
Sbjct: 299 TGRI 302


>gi|238882908|gb|EEQ46546.1| hypothetical protein CAWG_04901 [Candida albicans WO-1]
          Length = 424

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/329 (39%), Positives = 195/329 (59%), Gaps = 14/329 (4%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + FYY+R+ P+    +WL +      +F  REF++     IY RY S+ +  E KK ++ 
Sbjct: 1   MKFYYQRLLPFRYIFQWLSHSPKPTKDFTMREFAYEYRSKIYQRYNSFGTLEEFKKSVVT 60

Query: 72  RCPQKIDLGAIYDICPKD--HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GA+Y I PK+  +L    F P+ KELVFDID+TDYDD+R CC G DIC KCW
Sbjct: 61  ANPTRFEIGAVYKINPKERKNLPKQAFKPESKELVFDIDLTDYDDIRTCCQGTDICCKCW 120

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           +++ +  KI++ ALREDF F+ L+WVFSGRRG HCWV D+ A  LD   R  + +Y+ VL
Sbjct: 121 KFIQVGSKIIEAALREDFGFEHLVWVFSGRRGAHCWVSDKRARELDETSRKAIIDYLDVL 180

Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTK-------VLGL 241
           ++             HPH++R+  I++ +F   +L+EQ+  +T   +TK       +L  
Sbjct: 181 SSKNQNGSLNIKKPFHPHVERSFEIVKKEFLNVILQEQDPWNTTSEETKAWKQVDELLAF 240

Query: 242 VSNGDIRAEIEKEWTRIGPGQDV-EKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLELAY 299
           + N  ++ E++ +W     G    EKWD +  +  +    NS   +L  A ++I++   Y
Sbjct: 241 IPNKALQIELKNKWKGQTFGSTSKEKWDDISTVASNVLKSNSQVAQLTEAKKDIIIYYMY 300

Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           PRLD+ VS+ V HLLKSPFC+HP TG +C
Sbjct: 301 PRLDVQVSRQVIHLLKSPFCIHPGTGNVC 329


>gi|440475158|gb|ELQ43859.1| DNA primase small subunit [Magnaporthe oryzae Y34]
 gi|440487087|gb|ELQ66893.1| DNA primase small subunit [Magnaporthe oryzae P131]
          Length = 507

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 131/324 (40%), Positives = 201/324 (62%), Gaps = 10/324 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E++  +Y+R+FP+    +WL +     ++F  REF+FTL  D Y RY S+ + + L+KD+
Sbjct: 114 EVMRSFYQRLFPWRYLFQWLNHSPNPTNDFAHREFAFTLQNDAYLRYQSFTTSDLLRKDV 173

Query: 70  IKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++  P + ++G +Y+  P++       S F P  KEL FDID+TDYDD+R CC  A+IC 
Sbjct: 174 LRLMPSRFEIGPVYNTNPRERKTLRNSSAFKPLAKELCFDIDLTDYDDIRTCCDKANICN 233

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW++M++A K +D ALR+DF F+ ++WV+SGRRG H WVCD+ A  +D + R  +A Y+
Sbjct: 234 KCWQFMTMAIKTVDVALRDDFGFKHIMWVYSGRRGAHAWVCDKKARVMDDQKRRAIAGYL 293

Query: 187 SVLT--ANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVS 243
            V+   A   KKV +    LHPHL R+  +++  F E +L  Q+   ++E+  K+L L+ 
Sbjct: 294 EVVRGGAQSGKKVNVRR-PLHPHLSRSLDVLKGHFQEDVLRAQDPWESEEQAEKLLQLLP 352

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEILLELAYPRL 302
           +  +   + K+W        + KW  +  + K   ++N D K L  A ++I+LE  YPRL
Sbjct: 353 DRTLNDSLRKKWASSPGRSSLSKWADIDTVAKTGASRNLDAKALLEAKQDIVLEYTYPRL 412

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGK 326
           DI VSK +NHLLKSPF VHP TG+
Sbjct: 413 DIEVSKKLNHLLKSPFVVHPGTGR 436


>gi|428167929|gb|EKX36880.1| DNA primase small subunit [Guillardia theta CCMP2712]
          Length = 425

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 146/346 (42%), Positives = 201/346 (58%), Gaps = 31/346 (8%)

Query: 12  EMLPF------YYKRIFPYGPYLRWLFYGNLDN--------FRKREFSFTLNGDIYARYI 57
           E LPF      YY ++FPY    +WL Y   +         F +REFSFTL  D+Y RY+
Sbjct: 9   ENLPFDDKLRIYYGKLFPYDAMFQWLSYSPAEQSNDSKSEVFARREFSFTLANDVYIRYL 68

Query: 58  SYNSPNELKKDLIKRCPQKIDLGAIYDICP--KDHLQHSVFTPKMKELVFDIDMTDYDD- 114
           SY+S  E K D++K+ P KID+GA+Y   P  K ++    F    +E V DID+TDY D 
Sbjct: 69  SYSSAQEWKADMMKKLPHKIDMGAVYTKEPNQKAYVSKDAFKEMSREFVLDIDLTDYQDD 128

Query: 115 --VRNCCSGADICE--KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEA 170
             ++  C    I E    WR+M++A K+LDTALR DF F+ LLWVFSGRRGIHCWVCDE 
Sbjct: 129 GTIKTNCIDPSIPEFRDSWRFMAVAVKVLDTALRNDFGFKHLLWVFSGRRGIHCWVCDER 188

Query: 171 ALALDGRGRSCLAEYMSVLTANPVKKVFLT--GDVLHPHLKRA-KLIIEDQFEKLLEEQE 227
           A  L  +GR+ +AEY+++      +K  LT  G  +HP L+RA + ++   F +LLEEQ 
Sbjct: 189 ARNLSDQGRTAVAEYLNIFKGGEKEKTKLTAVGFNMHPMLQRAYENVLLPSFTRLLEEQG 248

Query: 228 LLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNS-DRKL 286
            L   E+    L L+ + +++  +   W+R       E+W+ L   ++    K    RK 
Sbjct: 249 WLDD-EKADATLDLIGDSEVKDILLDRWSR-KKRNAAERWEDLQNELRKTAKKGKITRKK 306

Query: 287 KYAIEE----ILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
              +EE    ++    YPRLDI+VSK +NHLLKSPFCVHPKT K+C
Sbjct: 307 ASQVEETIRFLVFRFTYPRLDINVSKMMNHLLKSPFCVHPKTQKVC 352


>gi|307103950|gb|EFN52206.1| hypothetical protein CHLNCDRAFT_139037 [Chlorella variabilis]
          Length = 434

 Score =  258 bits (658), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 139/342 (40%), Positives = 197/342 (57%), Gaps = 32/342 (9%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--------FRKREFSFTLNGDIYARYISYN 60
            + +M+  YY R+FP     +WL YGN           F +REF FTL+GDI+       
Sbjct: 18  GVQDMMKLYYSRLFPTQEMAKWLAYGNDSKHPQSDPSFFPRREFCFTLDGDIFG------ 71

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDHL--QHSV--FTPKMKELVFDIDMTDYDDVR 116
              EL   L  RCP K+D+G +Y++ P+     Q+S   F P  +ELVFDID+TDYDDVR
Sbjct: 72  -GAELAAALKDRCPSKLDIGPVYNVEPQRRAAYQNSAQGFVPVERELVFDIDLTDYDDVR 130

Query: 117 NCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDG 176
            C  G  IC KCW  M+ A +ILD  LR DF F+ +L+VFSGRRG+HCWVCDE A  L  
Sbjct: 131 TCGQGGHICTKCWPLMAAAIQILDQGLRRDFGFRHILFVFSGRRGVHCWVCDERARKLSD 190

Query: 177 RGRSCLAEYMSVLTANP--VKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKE 233
             RS +A Y +V       V K+ LT D  HP + RA  ++ + F E++L +Q+LL  +E
Sbjct: 191 EQRSAIASYFAVYKGQERGVAKLVLTSDD-HPAIARAYALLREAFEERILPQQQLLEEEE 249

Query: 234 RQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRL-------VAIIKHHQAKNSDRKL 286
            +  VL  + N  IR+ + + W  +   +   +W+ L          ++  +     R +
Sbjct: 250 VRKAVLAYLPNDAIRSAVRQRWQGVHGSE--ARWEALKEEVEAEAQALERGKKGWEARAM 307

Query: 287 KYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           + +++ ++   AYPRLD+ VSK +NHLLK+PFCVHPKTGK+C
Sbjct: 308 RRSLKAVVFACAYPRLDMEVSKKMNHLLKAPFCVHPKTGKVC 349


>gi|429857863|gb|ELA32703.1| DNA primase small subunit [Colletotrichum gloeosporioides Nara gc5]
          Length = 504

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 135/329 (41%), Positives = 202/329 (61%), Gaps = 10/329 (3%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELK 66
           S  E++  +Y+R+FP+    +WL +     ++F  REF+FTL  D Y RY S+ + + L+
Sbjct: 93  SDPEIMRSFYQRLFPWRYLFQWLNHSPSPTNDFGHREFAFTLQNDAYLRYQSFATHDLLR 152

Query: 67  KDLIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGAD 123
           KD+++  P + ++G +Y   P+D       S F P  KEL FDID+TDYDD+R CC  A+
Sbjct: 153 KDVLRLMPSRFEIGPVYSTNPRDRKTLRNASAFKPLAKELCFDIDLTDYDDIRTCCDKAN 212

Query: 124 ICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLA 183
           IC KCW+++++A K++D ALR+DF F+ ++WV+SGRRG H WVCD+ A  +  + R  +A
Sbjct: 213 ICIKCWQFITMAIKVVDVALRDDFGFKHIMWVYSGRRGAHAWVCDKKARTMGDQMRRSIA 272

Query: 184 EYMSVLT--ANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLG 240
            Y+ V+   A   KKV L    LHPH++R+   +   F E +LE Q+  ++ ER  ++L 
Sbjct: 273 GYLEVIKGGAQSGKKVNLWR-PLHPHVQRSLDTLMPHFQEDVLENQDPWASNERAERLLQ 331

Query: 241 LVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLELAY 299
           L+ +  +   + K+W        + KW  + A+ K    K  D R L  A ++ILLE  Y
Sbjct: 332 LLPDKTLIDNLRKKWDASPGRSSINKWADIDAVAKTSAGKKFDARGLLDAKQDILLEYTY 391

Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           PRLDI VSK +NHLLKSPF VHP TG++C
Sbjct: 392 PRLDIEVSKKLNHLLKSPFVVHPGTGRVC 420


>gi|452840307|gb|EME42245.1| hypothetical protein DOTSEDRAFT_73165 [Dothistroma septosporum
           NZE10]
          Length = 466

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 131/324 (40%), Positives = 194/324 (59%), Gaps = 7/324 (2%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E L  +Y+R+ P+    +WL +      +F+ REFSF L G+   RY+S+ S + L+K +
Sbjct: 58  ETLRQFYQRLCPFRQLFQWLNHSATPQPDFQNREFSFWLPGNRVIRYLSFPSADLLRKQV 117

Query: 70  IKRCPQKIDLGAIYDICPKDHL---QHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++ CP++ ++G  Y I P+D     + S F P MKELVFDIDMTDYD +R CC G  IC 
Sbjct: 118 VQMCPERFEIGPQYTINPRDRKTLKKASAFRPVMKELVFDIDMTDYDPIRTCCQGTKICN 177

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW+++ +A K++DTALREDF FQ ++WV+SGRRG H W+ D+ A  LD   R  +A Y+
Sbjct: 178 KCWQFIVMAIKVVDTALREDFGFQHIMWVYSGRRGAHAWISDKRARELDDSKRKAIANYL 237

Query: 187 SVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLVSNG 245
            VL  N   K       LHPH+ R+  ++   F+  +L EQ+   + E+  K+L L+ + 
Sbjct: 238 EVLRGNENGKRVGLRRPLHPHVDRSLKLLTPYFQNDVLAEQDPWQSAEQAEKLLNLIPDK 297

Query: 246 DIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN-SDRKLKYAIEEILLELAYPRLDI 304
            +   ++K+W         +KW  + A+ +       + R+L    ++I LE  YPRLD 
Sbjct: 298 SLADALKKKWDVSADRTSSQKWADIDALAEAGSLSTLNPRQLVDVKQDIRLEYTYPRLDA 357

Query: 305 HVSKGVNHLLKSPFCVHPKTGKIC 328
            VSK +NHLLKSPF VHP TG++C
Sbjct: 358 EVSKKLNHLLKSPFVVHPGTGRVC 381


>gi|358368261|dbj|GAA84878.1| DNA primase subunit Pri1 [Aspergillus kawachii IFO 4308]
          Length = 514

 Score =  257 bits (657), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 129/325 (39%), Positives = 196/325 (60%), Gaps = 7/325 (2%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           T+ +  +Y+R+FP+    +WL +G +   +F  REF+ TL  D Y RY SY + +  +KD
Sbjct: 83  TDTMLAFYQRLFPFRYLFQWLNHGIVPSPDFGNREFALTLQNDAYLRYQSYATADLFRKD 142

Query: 69  LIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++K  P + ++G +Y+  P+D   L+     P  KELVFDID+TDYDD+R+CC  A+IC 
Sbjct: 143 ILKMNPSRFEIGPVYNTNPRDKKTLRGGQMKPIAKELVFDIDLTDYDDIRSCCEKANICS 202

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW ++++A K++DTALREDF F+ +LWV+SGRRG H WVCD  A +L    R  +A Y+
Sbjct: 203 KCWAFVTMAMKVVDTALREDFGFEHILWVYSGRRGAHAWVCDPRARSLPDDRRRAIAGYL 262

Query: 187 SVL-TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVSN 244
            V+   N   K       LHPH+ R+  I++  F +  L +QE  S+ E+  ++L L+ +
Sbjct: 263 DVIRGGNSSGKRVNLKRPLHPHMSRSLEILKPYFAQTTLVDQETFSSSEQTQRILSLLPD 322

Query: 245 GDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN-SDRKLKYAIEEILLELAYPRLD 303
             +   + K W          KW  + A+ K  ++   +   L+ A ++I+LE  YPRLD
Sbjct: 323 KGLNESLRKRWESSPDRSSANKWADIDALAKTGKSSTLNPTTLRDAKQDIVLEYTYPRLD 382

Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
             VSK + HLLKSPF +HP TG++C
Sbjct: 383 SEVSKKMIHLLKSPFVIHPGTGRVC 407


>gi|406862021|gb|EKD15073.1| eukaryotic and archaeal DNA primase small subunit [Marssonina
           brunnea f. sp. 'multigermtubi' MB_m1]
          Length = 523

 Score =  257 bits (656), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 133/334 (39%), Positives = 208/334 (62%), Gaps = 13/334 (3%)

Query: 7   PESLT---EMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNS 61
           PES     E++  +Y+R+FP+    +WL +     ++F  REF+FTL  D Y RY ++ +
Sbjct: 106 PESRASDPEVMKSFYQRLFPWRYLFQWLNHSPTPSNDFGHREFAFTLQNDAYLRYQAFPT 165

Query: 62  PNELKKDLIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
            + L+KD+++  P + ++G +Y   P+D     + + F P  KEL FDID+TDYDD+R C
Sbjct: 166 SDLLRKDVLRLMPSRFEIGPVYSTNPRDRKTLRKSAAFKPISKELCFDIDLTDYDDIRTC 225

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           C  A+IC KCW+++++A K++D ALREDF F+ ++WV+SGRRG H WVCD+ A A+D + 
Sbjct: 226 CDKANICNKCWQFITMAIKVIDVALREDFGFKHIMWVYSGRRGAHAWVCDKKARAMDDQK 285

Query: 179 RSCLAEYMSVLT--ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQ 235
           R  +A Y+ V+   A   K+V +    LH H+ R+  I++  F+  +L++Q+   T E+ 
Sbjct: 286 RRAVAGYLEVIKGGAQSGKRVNVKR-PLHSHVARSLDILKSHFQTDILQDQDPWETDEKF 344

Query: 236 TKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEIL 294
            ++L L+ +  +   + K+W+         KW  + A+ K   +K  D K L  A ++I+
Sbjct: 345 DRLLQLLPDKTLNEALRKKWSSAPGRASKSKWADIDALAKTGASKALDPKALLDAKQDIV 404

Query: 295 LELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           LE  YPRLDI VSK +NHLLKSPF VHP TG++C
Sbjct: 405 LEYTYPRLDIEVSKHLNHLLKSPFVVHPGTGRVC 438


>gi|367047845|ref|XP_003654302.1| hypothetical protein THITE_2117187 [Thielavia terrestris NRRL 8126]
 gi|347001565|gb|AEO67966.1| hypothetical protein THITE_2117187 [Thielavia terrestris NRRL 8126]
          Length = 555

 Score =  257 bits (656), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 134/328 (40%), Positives = 203/328 (61%), Gaps = 13/328 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E+L  YY+R FP+    +WL +  +  ++F+ REFS  L+ D   RY SY + +  +KD+
Sbjct: 128 ELLRTYYQRCFPWRYMFQWLNHSPVPTNDFKHREFSLWLHNDAVMRYQSYMTSDLFRKDV 187

Query: 70  IKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++  P++I++G +Y   P+DH      + F    KEL FDID+TDYDD+R CC  A+IC 
Sbjct: 188 LRLMPRRIEIGPVYTADPRDHKTFRNSTAFQALAKELCFDIDLTDYDDIRTCCDKANICH 247

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCWR++++A K+L+ ALREDF FQ +LWVFSGRRG+H WVCD+ A  LD + R  +  Y+
Sbjct: 248 KCWRFITMAIKVLEAALREDFGFQHILWVFSGRRGVHAWVCDKKARTLDDQQRKAITGYL 307

Query: 187 SVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLVS 243
            V+T      KKV L    LHPHL R+  +++D F++ +LE Q+   T E+   +L  + 
Sbjct: 308 EVVTGGTQGGKKVNLRR-PLHPHLSRSLDLLKDHFQQDVLEVQDPWRTAEKAEALLQQIP 366

Query: 244 NGDIRAEIEKEWTRIGPGQ-DVEKWDRLVAIIKHHQAKNS--DRKLKYAIEEILLELAYP 300
           +  +RA +  +W    PG+    KW  + A+ +   +  +   R L  A ++++LE  YP
Sbjct: 367 DPSLRAALRSKW-EASPGRSSAAKWADIDALAQSGASSAALDPRDLLDAKQDVVLEHTYP 425

Query: 301 RLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           RLD  V++ + HLLKSPF VHP TG++C
Sbjct: 426 RLDAKVTQQLKHLLKSPFVVHPGTGRVC 453


>gi|313228730|emb|CBY17881.1| unnamed protein product [Oikopleura dioica]
          Length = 391

 Score =  256 bits (655), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 144/319 (45%), Positives = 189/319 (59%), Gaps = 13/319 (4%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           E+L  YYK  FP  P++ WL Y N +   +REFSFTL  D+Y R+ S+ S  EL +  IK
Sbjct: 18  EVLSSYYKEYFPLDPFIEWLGYRNDETLSRREFSFTLKDDVYTRFRSFTSKEELHQAFIK 77

Query: 72  RCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRY 131
             P+KID+GAIY+   K  L    F  + +ELVFDID++DYDDVR CC  A IC+KCW  
Sbjct: 78  TKPEKIDIGAIYNYSCKHRLSPD-FKEEQRELVFDIDISDYDDVRTCCQEARICQKCWPL 136

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTA 191
           MSI  K+L+  L+  F F+ +L+VFSGRRGIHCWV DE A  L+G  R  LA Y  V TA
Sbjct: 137 MSICVKVLEETLKTAFGFEQILFVFSGRRGIHCWVFDEEARKLNGAERFALAHYCQV-TA 195

Query: 192 NPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEI 251
             +     T   LH H++ A  I +  +++ LE Q+LL T+E     L  V   D    I
Sbjct: 196 QQIG----TSHRLHTHIQNALKITDLYWDEYLETQDLLGTEEGIDSFLKYVKLDD---SI 248

Query: 252 EKEWTRIGPGQD--VEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKG 309
           + EW       D  +E+W       K  Q+K    +L   IE I + + YPR+DI V++G
Sbjct: 249 KNEWKEQMLKYDTTMERWSIFQQKRKEAQSKKYRDRL--FIERIKIAVTYPRIDIKVTEG 306

Query: 310 VNHLLKSPFCVHPKTGKIC 328
            NHLLK+PF VHPKTGK+C
Sbjct: 307 FNHLLKAPFSVHPKTGKVC 325


>gi|172087532|ref|XP_001913308.1| DNA primase small subunit [Oikopleura dioica]
 gi|42601437|gb|AAS21460.1| DNA primase small subunit [Oikopleura dioica]
          Length = 391

 Score =  256 bits (655), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 144/319 (45%), Positives = 189/319 (59%), Gaps = 13/319 (4%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           E+L  YYK  FP  P++ WL Y N +   +REFSFTL  D+Y R+ S+ S  EL +  IK
Sbjct: 18  EVLSSYYKEYFPLDPFIEWLGYRNDETLSRREFSFTLKDDVYTRFRSFTSKEELHQAFIK 77

Query: 72  RCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRY 131
             P+KID+GAIY+   K  L    F  + +ELVFDID++DYDDVR CC  A IC+KCW  
Sbjct: 78  TKPEKIDIGAIYNYSCKHRLSPD-FKEEQRELVFDIDISDYDDVRTCCQEARICQKCWPL 136

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTA 191
           MSI  K+L+  L+  F F+ +L+VFSGRRGIHCWV DE A  L+G  R  LA Y  V TA
Sbjct: 137 MSICVKVLEETLKTAFGFEQILFVFSGRRGIHCWVFDEEARKLNGAERFALAHYCQV-TA 195

Query: 192 NPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEI 251
             +     T   LH H++ A  I +  +++ LE Q+LL T+E     L  V   D    I
Sbjct: 196 QQIG----TSHRLHTHIQSALKITDLYWDEYLETQDLLGTEEGIDSFLKYVKLDD---SI 248

Query: 252 EKEWTRIGPGQD--VEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKG 309
           + EW       D  +E+W       K  Q+K    +L   IE I + + YPR+DI V++G
Sbjct: 249 KNEWKEQMLKYDTTMERWSIFQQKRKEAQSKKYRDRL--FIERIKIAVTYPRIDIKVTEG 306

Query: 310 VNHLLKSPFCVHPKTGKIC 328
            NHLLK+PF VHPKTGK+C
Sbjct: 307 FNHLLKAPFSVHPKTGKVC 325


>gi|406697264|gb|EKD00529.1| DNA primase small subunit [Trichosporon asahii var. asahii CBS
           8904]
          Length = 438

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 134/334 (40%), Positives = 203/334 (60%), Gaps = 13/334 (3%)

Query: 6   DPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPN 63
           DP S  E++  +YKR+FPY    RWL  G++    +  REF+FT+  D+Y RY S+++  
Sbjct: 5   DPSS-REVMRAFYKRLFPYKAVYRWLNQGDVPGKLWTHREFAFTIENDVYIRYQSFSTAY 63

Query: 64  ELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
           + +K++++  P + ++G  Y   P+D   L      P+ +ELVFDIDMTDYD++R CCS 
Sbjct: 64  DFQKEVLRLLPSRFEIGPQYSAKPRDRKTLPAGALQPERRELVFDIDMTDYDEIRTCCSD 123

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
             IC +CW +++ A K+LD ALRE F F+ LLWV+SGRRGIHCW+ D  A+ L    R  
Sbjct: 124 KAICARCWGFIAAAVKVLDKALRETFGFKHLLWVYSGRRGIHCWISDTLAMDLTDDQRRA 183

Query: 182 LAEYMSVLTAN--PVKKVFLTG---DVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQ 235
           L  ++ V+      VKKV + G     LHP LK A   ++ +F +L LE+QE   ++   
Sbjct: 184 LTMFLEVIKGGKEQVKKVNVRGLGDADLHPSLKEALQTLKYEFSRLILEDQECFRSERGW 243

Query: 236 TKVLGLV-SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEIL 294
             +L L+ ++ +++  +  EW          +W++L+A +   +   + RK K AIE+++
Sbjct: 244 HTLLELLPADREVKDALRAEWESQPDASSTTRWEQLMAHMP-RKGTPAYRKYKNAIEDVI 302

Query: 295 LELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           L+  YPR+D  VSK  NHLLKSPFCVHP TG++C
Sbjct: 303 LQYTYPRIDAEVSKHRNHLLKSPFCVHPGTGRVC 336


>gi|392868939|gb|EAS30291.2| DNA primase small subunit [Coccidioides immitis RS]
          Length = 533

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 132/327 (40%), Positives = 198/327 (60%), Gaps = 12/327 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYG---NLDNFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           E +  +Y+R+FP+    +WL +G   ++D F  REF+FTL  D Y RY SY +   L+KD
Sbjct: 101 ETMYAFYQRLFPFKYLFQWLNHGIKPSVD-FGNREFAFTLQNDAYLRYQSYPTAEGLRKD 159

Query: 69  LIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
           +++  P + ++G +Y   P+D     + S F P  KELVFDID+TDYDD+R CC  A+IC
Sbjct: 160 ILRLNPSRFEIGPVYSTNPRDRKSLRKSSAFRPVSKELVFDIDLTDYDDIRTCCEKANIC 219

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
            KCW ++++A K++D ALR+DF F+ +LWV+SGRRG H WVCD+ A  L    R  +A Y
Sbjct: 220 PKCWAFVTMAIKVIDRALRDDFGFEHILWVYSGRRGAHAWVCDQRARNLTDERRKAIAGY 279

Query: 186 MSVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLV 242
           + V+   A   K+V L    LHPH++R++ I+   F   +L  Q+  S+ ++  ++L  +
Sbjct: 280 LEVVRGGAQSGKRVNLK-RPLHPHVERSRNILIPYFRSTILNNQDTFSSSDQAARLLQFI 338

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEILLELAYPR 301
            +  ++  ++K+W          KW  +  + K    +  D K L  A E+I+LE  YPR
Sbjct: 339 PDKSLKDALQKKWESAPSRGSSSKWSDIDDVAKASGNQGLDTKALLEAKEDIILEYTYPR 398

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           LD  VSK + HLLKSPF VHP TG++C
Sbjct: 399 LDAEVSKKLIHLLKSPFVVHPGTGRVC 425


>gi|241956137|ref|XP_002420789.1| DNA primase, small subunit, putative; subunit of the DNA polymerase
           alpha:primase complex, putative [Candida dubliniensis
           CD36]
 gi|223644131|emb|CAX41874.1| DNA primase, small subunit, putative [Candida dubliniensis CD36]
          Length = 448

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 128/329 (38%), Positives = 197/329 (59%), Gaps = 14/329 (4%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + FYY+R+ P+    +WL +      +F  REF++     IY RY S+ +  E KK ++ 
Sbjct: 29  MKFYYQRLLPFRYIFQWLSHSPKPTKDFTMREFAYEYRSKIYQRYNSFGTLEEFKKSVVT 88

Query: 72  RCPQKIDLGAIYDICPKD--HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GA+Y I PK+  +L    F P+ KELVFDID+TDYDD+R CC G DIC KCW
Sbjct: 89  ANPTRFEIGAVYKINPKERKNLPKQAFKPESKELVFDIDLTDYDDIRTCCQGTDICCKCW 148

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           +++ +   I+++ALREDF F+ L+WVFSGRRG HCWV D+ A  LD   R  + +Y+ VL
Sbjct: 149 KFIQVGSNIIESALREDFGFEHLVWVFSGRRGAHCWVSDKRARNLDETTRKAIVDYLDVL 208

Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTK-------VLGL 241
           ++             HPH++R+  I++ +F E +L++Q+  +T   ++K       +L L
Sbjct: 209 SSKNQNGSLNIKKPFHPHVERSFEIVKKEFLEVILQDQDPWNTTTDESKAWKQVDEMLAL 268

Query: 242 VSNGDIRAEIEKEWTRIGPGQDV-EKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLELAY 299
           + N  ++ E++ +W     G    EKWD + A+  +    N    +L  A ++I++   Y
Sbjct: 269 LPNKSLQIELKNKWKGQTFGSTSKEKWDDISAVASNVLKSNVQVAQLTEAKKDIIIYYMY 328

Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           PRLD+ VS+ V HLLKSPFC+HP TG +C
Sbjct: 329 PRLDVQVSRQVIHLLKSPFCIHPGTGNVC 357


>gi|119190973|ref|XP_001246093.1| hypothetical protein CIMG_05534 [Coccidioides immitis RS]
          Length = 520

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 132/327 (40%), Positives = 198/327 (60%), Gaps = 12/327 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYG---NLDNFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           E +  +Y+R+FP+    +WL +G   ++D F  REF+FTL  D Y RY SY +   L+KD
Sbjct: 88  ETMYAFYQRLFPFKYLFQWLNHGIKPSVD-FGNREFAFTLQNDAYLRYQSYPTAEGLRKD 146

Query: 69  LIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
           +++  P + ++G +Y   P+D     + S F P  KELVFDID+TDYDD+R CC  A+IC
Sbjct: 147 ILRLNPSRFEIGPVYSTNPRDRKSLRKSSAFRPVSKELVFDIDLTDYDDIRTCCEKANIC 206

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
            KCW ++++A K++D ALR+DF F+ +LWV+SGRRG H WVCD+ A  L    R  +A Y
Sbjct: 207 PKCWAFVTMAIKVIDRALRDDFGFEHILWVYSGRRGAHAWVCDQRARNLTDERRKAIAGY 266

Query: 186 MSVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLV 242
           + V+   A   K+V L    LHPH++R++ I+   F   +L  Q+  S+ ++  ++L  +
Sbjct: 267 LEVVRGGAQSGKRVNLKR-PLHPHVERSRNILIPYFRSTILNNQDTFSSSDQAARLLQFI 325

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEILLELAYPR 301
            +  ++  ++K+W          KW  +  + K    +  D K L  A E+I+LE  YPR
Sbjct: 326 PDKSLKDALQKKWESAPSRGSSSKWSDIDDVAKASGNQGLDTKALLEAKEDIILEYTYPR 385

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           LD  VSK + HLLKSPF VHP TG++C
Sbjct: 386 LDAEVSKKLIHLLKSPFVVHPGTGRVC 412


>gi|71018501|ref|XP_759481.1| hypothetical protein UM03334.1 [Ustilago maydis 521]
 gi|46098969|gb|EAK84202.1| hypothetical protein UM03334.1 [Ustilago maydis 521]
          Length = 492

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 140/354 (39%), Positives = 206/354 (58%), Gaps = 35/354 (9%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFY-----GNLDNFRKREFSFTLNGDIYARYI 57
           D  DP S   ML FY +R+FP+     WL +          F  REF+FTL  + Y RY 
Sbjct: 46  DSSDPMS---MLSFY-RRLFPWKQLFSWLNHDLAHMAATKCFTHREFAFTLQNEAYLRYN 101

Query: 58  SYNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDV 115
           S++S +ELKK++ +  P + ++G +Y   PKD   +Q + F P  +ELVFDIDMTDYD+V
Sbjct: 102 SFSSADELKKEVCRLNPARFEIGPVYTAKPKDRKTVQKASFKPVQRELVFDIDMTDYDEV 161

Query: 116 RNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALD 175
           R CCSG  IC++CW ++++A ++LD ALR+DF F+ LLWV+SGRRGIHCW+ D+ A  L 
Sbjct: 162 RTCCSGKGICKRCWAFIAVAVQVLDEALRQDFGFKHLLWVYSGRRGIHCWISDKEAFQLA 221

Query: 176 GRGRSCLAEYMSVLT--ANPVKKV------FLTGDVLHPHLKRA-----------KLIIE 216
              R  +  ++ V+   AN VKKV         G  LHP L+RA           KL   
Sbjct: 222 DDARKAIVGWLEVIKGGANQVKKVDAGWMGGAGGRSLHPSLRRAIGGEGNESGPLKLAFV 281

Query: 217 DQFEKLLEEQELLSTKERQTKVLGLVSNGDIR--AEIEKEWTRIGPGQDVEKWDRLVAII 274
           D    +L++Q+   + E+   +L L+ + ++   A++  +W R      +EKW  ++   
Sbjct: 282 D---TVLKDQDCFRSPEKWNILLQLLPSSEVEAIAKLRSKWERSPNRSSLEKWQDVMECA 338

Query: 275 KHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +      S+R  +  +E+I+L+  YPR+D  VSK +NHLLKSPF VHP TG++C
Sbjct: 339 QRAGEYKSERIWRPCLEDIILQYTYPRIDAEVSKHLNHLLKSPFVVHPATGRVC 392


>gi|296420556|ref|XP_002839835.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636041|emb|CAZ84026.1| unnamed protein product [Tuber melanosporum]
          Length = 516

 Score =  254 bits (649), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 127/320 (39%), Positives = 198/320 (61%), Gaps = 9/320 (2%)

Query: 17  YYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCP 74
           +Y+R+FP+ P  +WL +  +   +F  REF+FTL    Y RY S+ +   L+K++++  P
Sbjct: 116 FYQRLFPFRPLFQWLNHSPIPCHDFGHREFAFTLQNSAYLRYQSFPTMELLRKEILRLNP 175

Query: 75  QKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYM 132
            + ++G IY   P+D   L  S F P  KELVFDID+TDYD++R CC  A+IC  CW ++
Sbjct: 176 SRFEIGPIYSANPRDRKTLHKSAFHPLSKELVFDIDLTDYDEIRTCCDKANICNLCWNFI 235

Query: 133 SIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTAN 192
           ++A K+++ ALR+D  F+ +LWV+SGRRG H W+CD+ A +LD   R  +  Y+ ++   
Sbjct: 236 TVAIKVMNAALRDDLGFKHVLWVYSGRRGAHAWICDKRARSLDDAKRRAIVNYLGLVKGG 295

Query: 193 --PVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLVSNGDIRA 249
               KKV +    LHPH+ R+  +++D+FE  +L EQ+     ER  K+L L+ +  +  
Sbjct: 296 GQAGKKVNIW-RPLHPHISRSLNLLKDRFENDILREQDPWRDNERAEKLLQLLPDKTLND 354

Query: 250 EIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN-SDRKLKYAIEEILLELAYPRLDIHVSK 308
            + K+W        + KW  +  + K   ++  +  +LK + EE++LE  YPRLD  VSK
Sbjct: 355 ALRKKWDNHPSRPSLNKWADVYDVAKTGVSEGLNPARLKESREEVVLEYMYPRLDAEVSK 414

Query: 309 GVNHLLKSPFCVHPKTGKIC 328
            +NHLLKSPFCVHP+TG++C
Sbjct: 415 HLNHLLKSPFCVHPQTGRVC 434


>gi|296804828|ref|XP_002843262.1| DNA primase small subunit [Arthroderma otae CBS 113480]
 gi|238845864|gb|EEQ35526.1| DNA primase small subunit [Arthroderma otae CBS 113480]
          Length = 533

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 132/333 (39%), Positives = 202/333 (60%), Gaps = 13/333 (3%)

Query: 4   KYDPESLTEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNS 61
           + DPES++     +Y+R+FP+    +WL +G     +F  REF+FTL  D Y RY S+ +
Sbjct: 102 QVDPESMSA----FYQRLFPFKYLFQWLNHGVKPSTDFGNREFAFTLPNDAYLRYQSFQT 157

Query: 62  PNELKKDLIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
            + L KD+++  P + ++G +Y   P+D     +   F P  KELVFDID+TDYDD+R C
Sbjct: 158 ADTLHKDVMRLNPSRFEIGPVYSTNPRDRKSLRKPGAFKPISKELVFDIDLTDYDDIRTC 217

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS A+ICEKCW +++++ K++D ALREDF F+ +LWV+SGRRG H WVCD+ A  L    
Sbjct: 218 CSKANICEKCWAFVTMSIKVIDAALREDFGFEHILWVYSGRRGAHAWVCDKKARNLPDDR 277

Query: 179 RSCLAEYMSVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQ 235
           R  +A Y+ V+   +   K+V L    LHPH+ R+   + + F   +L +Q+  S  ++ 
Sbjct: 278 RRAIAGYLEVVRGGSQSGKRVNLRR-PLHPHITRSLDTLREYFASTVLVDQDPFSRPDQA 336

Query: 236 TKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILL 295
           +++L L+ +  +R  ++K+W          KW  + A+ K +      + L  A ++I+L
Sbjct: 337 SRLLELLPDKTLRTALQKKWDSSPGRHSRNKWADIDAVAKTNCRGLDTKALLEAKQDIVL 396

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           E  YPRLD  VSK + HLLKSPF VHP TG++C
Sbjct: 397 EYTYPRLDAEVSKKLIHLLKSPFVVHPGTGRVC 429


>gi|327306435|ref|XP_003237909.1| DNA primase subunit Pri1 [Trichophyton rubrum CBS 118892]
 gi|326460907|gb|EGD86360.1| DNA primase subunit Pri1 [Trichophyton rubrum CBS 118892]
          Length = 521

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 132/339 (38%), Positives = 203/339 (59%), Gaps = 12/339 (3%)

Query: 1   MADKYDP---ESLTEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYAR 55
           +ADK  P   ++  E +  +Y+R+FP+    +WL +G     +F  REF+FTL  D Y R
Sbjct: 80  IADKPAPSLAQTDPEFMSAFYQRLFPFKYLFQWLNHGVKPSTDFGNREFAFTLPNDAYLR 139

Query: 56  YISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDY 112
           Y S+ + + L KD+++  P + ++G +Y   P+D     +   F P  KELVFDID+TDY
Sbjct: 140 YQSFQTADALHKDVMRLNPSRFEIGPVYSTNPRDRKTLRKPGAFKPVSKELVFDIDLTDY 199

Query: 113 DDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAAL 172
           DD+R CCS A+IC KCW +++++ K++D ALREDF FQ +LWV+SGRRG H WVCD++A 
Sbjct: 200 DDIRTCCSKANICLKCWAFVTMSIKVIDAALREDFGFQHILWVYSGRRGAHAWVCDKSAR 259

Query: 173 ALDGRGRSCLAEYMSVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELL 229
            L    R  +A Y+ V+   +   K+V L    LHPH+ R+   + + F   +L +Q+  
Sbjct: 260 NLPDDRRRAIAGYLEVVRGGSQSGKRVNLRR-PLHPHITRSLNTLGEYFASTVLVDQDPF 318

Query: 230 STKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYA 289
           S  ++  +++ L+ +  +RA ++K+W          KW  +  + K +      + L  A
Sbjct: 319 SRPDQAARLIELLPDKTLRAALQKKWDSAPGRSSSSKWADIDTVAKANSRGLDTKALLEA 378

Query: 290 IEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            ++I+LE  YPRLD  VSK + HLLKSPF VHP TG++C
Sbjct: 379 KQDIVLEYTYPRLDAEVSKKLIHLLKSPFVVHPGTGRVC 417


>gi|398396092|ref|XP_003851504.1| hypothetical protein MYCGRDRAFT_44260 [Zymoseptoria tritici IPO323]
 gi|339471384|gb|EGP86480.1| hypothetical protein MYCGRDRAFT_44260 [Zymoseptoria tritici IPO323]
          Length = 494

 Score =  254 bits (648), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 133/327 (40%), Positives = 192/327 (58%), Gaps = 8/327 (2%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELK 66
           S  E L  +Y+R+ P+    +WL +      +F+ REFSF L G    RY+S+ S + L+
Sbjct: 84  SEPETLRQFYQRLCPFRHLFQWLNHSATPQPDFQNREFSFWLPGSTVIRYLSFPSADLLR 143

Query: 67  KDLIKRCPQKIDLGAIYDICPKDHL---QHSVFTPKMKELVFDIDMTDYDDVRNCCSGAD 123
           K  ++  P++ ++G  Y I PKD     + S F P MKELVFDIDMTDYD +R CCSGA 
Sbjct: 144 KQCVQMTPERFEIGPQYSINPKDRKTLKKASAFKPIMKELVFDIDMTDYDSIRTCCSGAK 203

Query: 124 ICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLA 183
           IC KCW+++ +A K++D ALREDF FQ ++WV+SGRRG H W+ D+ A  +D   R  +A
Sbjct: 204 ICIKCWQFIVMAIKVVDKALREDFGFQHIMWVYSGRRGAHAWISDKRAREMDDTKRRAVA 263

Query: 184 EYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLV 242
            YM  L  N   K       LHPH++R+  I+   F+  +L EQ+   + E+  K+L L+
Sbjct: 264 NYMEALRGNENGKRNAFRRPLHPHIERSLKILTPYFQTDVLAEQDPWRSNEQAEKLLALI 323

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN-SDRKLKYAIEEILLELAYPR 301
            +  +   + K+W         +KW  + A+ +       S ++L    ++I LE  YPR
Sbjct: 324 PDKSLTDALRKKWESAD-RSSTQKWADIDAVAEAGNLSTLSTKQLVETKQDIRLEYTYPR 382

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           LD  VSK +NHLLKSPF VHP TG++C
Sbjct: 383 LDAEVSKKLNHLLKSPFVVHPGTGRVC 409


>gi|328862885|gb|EGG11985.1| hypothetical protein MELLADRAFT_51463 [Melampsora larici-populina
           98AG31]
          Length = 416

 Score =  254 bits (648), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 140/333 (42%), Positives = 197/333 (59%), Gaps = 23/333 (6%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCP 74
           YY+R+FP+     WL   ++ N  F  REF+ TL  + Y RY SY S  EL+KD+I+  P
Sbjct: 4   YYRRLFPWKQLFLWLNQDHVPNYAFTHREFAVTLRNEAYLRYNSYASHIELQKDIIRLNP 63

Query: 75  QKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYM 132
            + ++G  Y   PKD   +  + F P ++ELVFDID+TDYDD+R+CCS A IC KCW+++
Sbjct: 64  TRFEIGPAYTAQPKDRKLISKAAFKPILRELVFDIDLTDYDDIRSCCSEARICLKCWKFI 123

Query: 133 SIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTAN 192
           +IA ++LD +LREDF FQ LLWV+SGRRGIHCWV DE AL L    R  +  ++ +L   
Sbjct: 124 TIAVQVLDLSLREDFGFQHLLWVYSGRRGIHCWVSDEEALKLTDEQRKGIVNFLDILRGG 183

Query: 193 PVK---KVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLVSNGDIR 248
             +   KV LT   LHP ++R+  I++  F ++   EQ+ L   E+ + VL  +S  +  
Sbjct: 184 GSRHGLKVSLTHP-LHPAIERSYNILKVYFREIAFVEQDALKDPEKLSTVLQALSESEKL 242

Query: 249 AEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-------------LKYAIEEILL 295
             I ++ T         KW+ +   +   + KN D+K             LK A+  I L
Sbjct: 243 KHISEKLTSAKELTSFAKWEEIHKTVG-QEIKNLDKKANSSFGDQRRSQRLKEALINIQL 301

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
              YPR+D+ VSK +NHLLKSPFCVHP TGK+C
Sbjct: 302 HYTYPRIDLEVSKHMNHLLKSPFCVHPGTGKVC 334


>gi|397565114|gb|EJK44484.1| hypothetical protein THAOC_36967 [Thalassiosira oceanica]
          Length = 493

 Score =  253 bits (647), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 145/358 (40%), Positives = 206/358 (57%), Gaps = 42/358 (11%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFY-----------------GNLDNFRKREFSFTL----NG 50
           E+L  YY R+FPY     WL Y                 G+   F +REFS T+      
Sbjct: 56  ELLAMYYSRLFPYHMLYSWLSYDPATAKPGNNAKAGSSLGSACTFPRREFSMTIEPQPGN 115

Query: 51  DIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDID 108
           ++Y RY S+ S +EL + + KR P KID+GA+++  PKD+  L       + +ELVFDID
Sbjct: 116 EVYIRYQSFLSQDELMEAIQKRRPVKIDIGAVFNYPPKDNKSLPSGKLQTQERELVFDID 175

Query: 109 MTDYDDVRNC-CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVC 167
           +TDYDDVRNC CSGA IC KCW++M +A K++D  LR+DF F+ L W +SGRRG+HCWVC
Sbjct: 176 LTDYDDVRNCGCSGAKICGKCWKFMGMAIKVMDEGLRKDFGFKNLAWFYSGRRGVHCWVC 235

Query: 168 DEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQE 227
           DE+A  L    RS +A Y  V   +   K F     +HP L RA  ++E +F K +  +E
Sbjct: 236 DESARKLSNDARSAVASYFEVDLGSEKNKNFHITSPVHPTLSRAYRVLEPEFVKDVLPEE 295

Query: 228 ---LLSTKERQTKVLGLVSNG--DIRAEIEKEWTRIGPGQDVEKWDR-------LVAIIK 275
              ++S+++  TK+L  +      +  +++K+W +       EKW         L+    
Sbjct: 296 GHGIMSSRKMWTKLLTTLPESCMSVADKLDKKWQKEN-STPREKWVELKKGIMTLIGKTG 354

Query: 276 HHQAK----NSDR-KLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           H +A+    NS+R K+++   E +    YPRLDI+VSK  NHLLKSPFCVHPKTG++C
Sbjct: 355 HAKAQKNLSNSERVKIEHWPMETVFRYTYPRLDINVSKMQNHLLKSPFCVHPKTGRVC 412


>gi|350633525|gb|EHA21890.1| hypothetical protein ASPNIDRAFT_49072 [Aspergillus niger ATCC 1015]
          Length = 514

 Score =  253 bits (647), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 128/325 (39%), Positives = 194/325 (59%), Gaps = 7/325 (2%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           T+ +  +Y+R+FP+    +WL +G +   +F  REF+ TL  D Y RY SY + +  +KD
Sbjct: 83  TDTMLAFYQRLFPFRYLFQWLNHGIVPSPDFGNREFALTLQNDAYLRYQSYATADLFRKD 142

Query: 69  LIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++K  P + ++G +Y+  P+D   L+     P  KELVFDID+TDYDD+R+CC  A+IC 
Sbjct: 143 ILKMNPSRFEIGPVYNTNPRDRKTLRGGQMKPIAKELVFDIDLTDYDDIRSCCEKANICS 202

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW ++++A K++DTALREDF F+ +LWV+SGRRG H WVCD  A  L    R  +A Y+
Sbjct: 203 KCWAFVTMAMKVVDTALREDFGFEHILWVYSGRRGAHAWVCDPRARNLPDDRRRAIAGYL 262

Query: 187 SVL-TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVSN 244
            V+   N   K       LHPH+ R+  I++  F +  L +QE   + E+  ++L L+ +
Sbjct: 263 DVIRGGNSSGKRVNLKRPLHPHMSRSLEILKPYFAQTTLVDQETFGSSEQAQRLLSLLPD 322

Query: 245 GDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN-SDRKLKYAIEEILLELAYPRLD 303
             +   + K W          KW  + A+ K  ++   +   L+ A ++I+LE  YPRLD
Sbjct: 323 KGLNESLRKRWESSPDRSSANKWADIDALAKTGKSSTLNPTTLRDAKQDIVLEYTYPRLD 382

Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
             VSK + HLLKSPF +HP TG++C
Sbjct: 383 SEVSKKMIHLLKSPFVIHPGTGRVC 407


>gi|345564438|gb|EGX47401.1| hypothetical protein AOL_s00083g494 [Arthrobotrys oligospora ATCC
           24927]
          Length = 499

 Score =  253 bits (647), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 134/334 (40%), Positives = 202/334 (60%), Gaps = 12/334 (3%)

Query: 2   ADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISY 59
           A+  DPE + +    +Y R+FP+    RWL +  L   +F  REF+FTL+ D Y RY  Y
Sbjct: 76  ANPSDPEDMLQ----FYSRLFPWRQLFRWLNHSELPSTDFAHREFAFTLHNDAYLRYQCY 131

Query: 60  NSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQ-HSVFTPKMKELVFDIDMTDYDDVRNC 118
            +   L++D++   P + ++G +Y   P+D  Q    F P  KELVFDID+TDYD++R C
Sbjct: 132 PTFETLRRDVLNLNPSRFEIGPVYSTKPRDRKQAKGSFKPIEKELVFDIDLTDYDEIRTC 191

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS   IC KCW+++++A K++D ALR+DF FQ ++WV+SGRRG H WVCD+ A  L    
Sbjct: 192 CSKTKICIKCWQFVTMAIKVVDVALRDDFGFQHIMWVYSGRRGAHAWVCDKKARKLGDGK 251

Query: 179 RSCLAEYMSVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQ 235
           R  +A Y  V+  ++   KKV L    LHPH++R+  I++D F + +LE Q+   T+++ 
Sbjct: 252 RRAIAAYFEVVKGSSQSGKKVNLER-PLHPHIRRSHDILKDDFKQNILENQDPFRTEKQA 310

Query: 236 TKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEIL 294
            ++L L+ +  ++  + ++W         +KW  + A+     +K    K L    ++I+
Sbjct: 311 ERLLQLLPDRQLKEALREKWDSTIERPSSDKWKDIDALAGSGVSKTIIPKVLLEHKQDII 370

Query: 295 LELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           LE  YPRLD  VSK +NHLLKSPF VHP TGK+C
Sbjct: 371 LEYTYPRLDAEVSKHLNHLLKSPFVVHPGTGKVC 404


>gi|344300839|gb|EGW31160.1| hypothetical protein SPAPADRAFT_63074 [Spathaspora passalidarum
           NRRL Y-27907]
          Length = 448

 Score =  253 bits (646), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 135/336 (40%), Positives = 199/336 (59%), Gaps = 18/336 (5%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELK 66
           S T+M+ FYY+R+ P+    +WL +      +F KREF++      Y RY S+ + +E K
Sbjct: 26  SETDMI-FYYQRLLPFRQIFQWLNHSPKPTTDFTKREFAYEYRNGAYQRYNSFGTLDEFK 84

Query: 67  KDLIKRCPQKIDLGAIYDICPKD--HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADI 124
             +++  P + ++GAIY I PK+  ++  S   P+ KELVFDID+TDYDD+R CCSG DI
Sbjct: 85  NSVVRANPTRFEIGAIYSIDPKERKNVPKSAMKPRGKELVFDIDLTDYDDIRTCCSGTDI 144

Query: 125 CEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAE 184
           C KCW+++ +  KI+++ALREDF F  L+WVFSGRRG HCWV D  A  LD   R  + +
Sbjct: 145 CTKCWKFIQVGSKIIESALREDFGFSNLIWVFSGRRGAHCWVSDARARNLDETMRKAIID 204

Query: 185 YMSVLTANPVKKVFLT-GDVLHPHLKRAKLIIEDQF-EKLLEEQE--LLSTKERQTK--- 237
           Y+ VL A  +K   L+     HPH++R+  I+++ F E +LEEQ   L S      K   
Sbjct: 205 YLDVLGAKGIKSSKLSIKKPYHPHIERSFNILKNSFSEVILEEQNPWLTSMDANNEKAWV 264

Query: 238 ----VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD-RKLKYAIEE 292
               +L L+ +  ++ E+  +W +        KWD +  + K     N    +L  A ++
Sbjct: 265 QIEELLSLIPHKSLQIELRNKW-KNSYSSSRSKWDDINKLAKSVLKSNIQVNQLNEAKKD 323

Query: 293 ILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           I++   YPRLD+ VS+ V HLLKSPFC+HP TG +C
Sbjct: 324 IIIYYMYPRLDVEVSRQVIHLLKSPFCIHPSTGNVC 359


>gi|154313300|ref|XP_001555976.1| hypothetical protein BC1G_05347 [Botryotinia fuckeliana B05.10]
          Length = 510

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 126/325 (38%), Positives = 201/325 (61%), Gaps = 10/325 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E++  +Y+R+FP+    +WL +      +F  REF+FTL  D Y RY ++ + + L+KD+
Sbjct: 104 EVMRSFYQRLFPWRHLFQWLNHSPTPSTDFGHREFAFTLQNDAYLRYQAFPTSDLLRKDV 163

Query: 70  IKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++  P + ++G +Y   P+D     + S F P  KEL FDID+TDYD++R CC  A+IC 
Sbjct: 164 LRLMPSRFEIGPVYSTNPRDRKTLRKSSAFRPIAKELCFDIDLTDYDEIRTCCDKANICN 223

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW+++++A K++D ALR+D  F+ ++WV+SGRRG H WVCD+ A  +D + R  +A Y+
Sbjct: 224 KCWQFITMAIKVVDVALRDDSGFKHIMWVYSGRRGAHAWVCDKKARQMDDQKRRAIAGYL 283

Query: 187 SVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLVS 243
            V+   + P KKV +    LHPH+ R+  I++  F+  +L +Q+     ++  K+L L+ 
Sbjct: 284 EVIRGGSQPAKKVNVKR-PLHPHVLRSLDILKGHFQNDILHDQDPWEEDDKIDKLLQLLP 342

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLD 303
           +  +   + K+W+         KW  + A+ K  +  +  R L  A ++I+LE  YPRLD
Sbjct: 343 DRTLNESLRKKWSSAPGRSSTSKWADIDALAKSTKGLDP-RALLEAKQDIVLEYTYPRLD 401

Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
           I VSK +NHLLKSPF VHP TG++C
Sbjct: 402 IEVSKHLNHLLKSPFVVHPGTGRVC 426


>gi|347827090|emb|CCD42787.1| similar to DNA primase small subunit [Botryotinia fuckeliana]
          Length = 527

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 126/325 (38%), Positives = 201/325 (61%), Gaps = 10/325 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E++  +Y+R+FP+    +WL +      +F  REF+FTL  D Y RY ++ + + L+KD+
Sbjct: 121 EVMRSFYQRLFPWRHLFQWLNHSPTPSTDFGHREFAFTLQNDAYLRYQAFPTSDLLRKDV 180

Query: 70  IKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++  P + ++G +Y   P+D     + S F P  KEL FDID+TDYD++R CC  A+IC 
Sbjct: 181 LRLMPSRFEIGPVYSTNPRDRKTLRKSSAFRPIAKELCFDIDLTDYDEIRTCCDKANICN 240

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW+++++A K++D ALR+DF F+ ++WV+SGRRG H WVCD+ A  +D + R  +A Y+
Sbjct: 241 KCWQFITMAIKVVDVALRDDFGFKHIMWVYSGRRGAHAWVCDKKARQMDDQKRRAIAGYL 300

Query: 187 SVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLVS 243
            V+   +   KKV +    LHPH+ R+  I++  F+  +L +Q+     ++  K+L L+ 
Sbjct: 301 EVIRGGSQTAKKVNVKR-PLHPHVLRSLDILKGHFQNDILHDQDPWEEDDKIDKLLQLLP 359

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLD 303
           +  +   + K+W+         KW  + A+ K  +  +  R L  A ++I+LE  YPRLD
Sbjct: 360 DRTLNESLRKKWSSAPGRSSTSKWADIDALAKSTKGLDP-RALLEAKQDIVLEYTYPRLD 418

Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
           I VSK +NHLLKSPF VHP TG++C
Sbjct: 419 IEVSKHLNHLLKSPFVVHPGTGRVC 443


>gi|255723459|ref|XP_002546663.1| DNA primase small subunit [Candida tropicalis MYA-3404]
 gi|240130794|gb|EER30357.1| DNA primase small subunit [Candida tropicalis MYA-3404]
          Length = 455

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 129/334 (38%), Positives = 194/334 (58%), Gaps = 21/334 (6%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + FYY+R+ P+    +WL +      +F  REF++     IY RY S+ +  E KK ++ 
Sbjct: 27  MKFYYERLLPFRYVFQWLSHSPKPTKDFTMREFAYEYRNKIYQRYNSFGTLEEFKKSVVT 86

Query: 72  RCPQKIDLGAIYDICPKD--HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GA+Y I PK+  +L  + F P+ KELVFDID+TDYDD+R CC G DIC KCW
Sbjct: 87  ANPTRFEVGAVYKINPKERKNLPKTAFKPESKELVFDIDLTDYDDIRTCCQGTDICCKCW 146

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           +++ +  KI++TALREDF F+ ++WVFSGRRG HCW+ D+ A  LD   R  + EY+ VL
Sbjct: 147 KFIQVGSKIIETALREDFGFEHMVWVFSGRRGAHCWISDKRARELDESSRRAIVEYLDVL 206

Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQ----------TKV 238
            A   +        LHPH++RA  I++ +F   +L+EQ+   T+  Q           ++
Sbjct: 207 GAKTQQGTLNLRKPLHPHVERAFEIVKKEFATVILQEQDPWGTQPGQEAESKAWKQTEEL 266

Query: 239 LGLVSNGDIRAEIEKEW---TRIGPGQDVEKWDRLVAIIKHHQAKNSD-RKLKYAIEEIL 294
           L  + +  ++ E+  +W         QD  KWD +  +       N+    L  + ++I+
Sbjct: 267 LKFIPSKPLQIELRNKWKASKSYSSSQD--KWDDINKVASQVLKSNAQVSTLNDSKKDII 324

Query: 295 LELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +   YPRLD+ VSK V HLLKSPFC+HP TG +C
Sbjct: 325 IYYMYPRLDVQVSKQVIHLLKSPFCIHPGTGNVC 358


>gi|388854304|emb|CCF52047.1| related to DNA primase 48K protein PRI1 [Ustilago hordei]
          Length = 494

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 141/354 (39%), Positives = 204/354 (57%), Gaps = 35/354 (9%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFY-----GNLDNFRKREFSFTLNGDIYARYI 57
           D  DP S   ML FY +R+FP+     WL +          F  REF+FTL  + Y RY 
Sbjct: 46  DSSDPMS---MLSFY-RRLFPWKQLFAWLNHDLPHMSATKCFTHREFAFTLQNEAYLRYN 101

Query: 58  SYNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDV 115
           S+ S +ELKK++ +  P + ++G +Y   PKD   +Q + F P  +ELVFDIDMTDYD+V
Sbjct: 102 SFASADELKKEVCRLNPARFEIGPVYTAKPKDRKTVQKASFKPVQRELVFDIDMTDYDEV 161

Query: 116 RNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALD 175
           R CCSG  IC++CW ++++A ++LD ALREDF F+ LLWV+SGRRGIHCW+ D+ A  L 
Sbjct: 162 RTCCSGKGICKRCWAFIAVAVQVLDEALREDFGFKHLLWVYSGRRGIHCWISDKEAFELA 221

Query: 176 GRGRSCLAEYMSVLT--ANPVKKV------FLTGDVLHPHLKRA-----------KLIIE 216
              R  +  ++ V+   AN VKKV         G  LHP L+RA           KL   
Sbjct: 222 DDARKAIVGWLEVIKGGANQVKKVDAGWMGSAGGRSLHPSLRRAIDGEGSESGPLKLAFV 281

Query: 217 DQFEKLLEEQELLSTKERQTKVLGLVSNGDIRA--EIEKEWTRIGPGQDVEKWDRLVAII 274
           D    +L++Q+   + E+   +L L+ + +  A  ++  +W R      +EKW  ++   
Sbjct: 282 D---TVLKDQDCFRSPEQWGVLLQLLPSPEAEAIEKLRSKWERSSNRSSLEKWQDVMEAA 338

Query: 275 KHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +      S+R  +  +E+I+L+  YPR+D  VSK +NHLLKSPF VHP TG++C
Sbjct: 339 QRAGEYKSERIWRPCLEDIILQYTYPRIDAEVSKHLNHLLKSPFVVHPATGRVC 392


>gi|326470458|gb|EGD94467.1| DNA primase subunit Pri1 [Trichophyton tonsurans CBS 112818]
          Length = 520

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 130/333 (39%), Positives = 200/333 (60%), Gaps = 13/333 (3%)

Query: 4   KYDPESLTEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNS 61
           + DPES++     +Y+R+FP+    +WL +G     +F  REF+FTL  D Y RY S+ +
Sbjct: 89  QVDPESMSA----FYQRLFPFKYLFQWLNHGVKPSTDFGNREFAFTLPNDAYLRYQSFQT 144

Query: 62  PNELKKDLIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
            + L K++I+  P + ++G +Y   P+D     +   F P  KELVFDID+TDYDD+R C
Sbjct: 145 ADALHKEVIRLNPSRFEIGPVYSTNPRDRKTLRKPGAFKPIAKELVFDIDLTDYDDIRTC 204

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS A+IC KCW +++++ K++D ALR+DF FQ +LWV+SGRRG H WVCD+ A  L    
Sbjct: 205 CSKANICLKCWAFVTMSIKVIDAALRDDFGFQHILWVYSGRRGAHAWVCDKVARNLPDDR 264

Query: 179 RSCLAEYMSVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQ 235
           R  +A Y+ V+   +   K+V L    LHPH+ R+   + + F   +L +Q+  S  ++ 
Sbjct: 265 RRAIAGYLEVVRGGSQSGKRVNLRR-PLHPHITRSIDTLREYFASTVLVDQDPFSRPDQA 323

Query: 236 TKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILL 295
            +++ L+ +  +RA ++K+W          KW  +  + K +      + L  A ++I+L
Sbjct: 324 ARLIELLPDKTLRAALQKKWDSAPGRSSSSKWADIDTVAKANSRGLDTKALLEAKQDIVL 383

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           E  YPRLD  VSK + HLLKSPF VHP TG++C
Sbjct: 384 EYTYPRLDAEVSKKLIHLLKSPFVVHPGTGRVC 416


>gi|67525151|ref|XP_660637.1| hypothetical protein AN3033.2 [Aspergillus nidulans FGSC A4]
 gi|40744428|gb|EAA63604.1| hypothetical protein AN3033.2 [Aspergillus nidulans FGSC A4]
 gi|259486020|tpe|CBF83530.1| TPA: DNA primase subunit Pri1, putative (AFU_orthologue;
           AFUA_3G09020) [Aspergillus nidulans FGSC A4]
          Length = 521

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 128/326 (39%), Positives = 199/326 (61%), Gaps = 9/326 (2%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           TE +  +Y+R+FP+    +WL +G +   +F  REF+ TL  D Y RY SY + +  +KD
Sbjct: 89  TETMLQFYQRLFPFRYLFQWLNHGIVPSPDFGNREFALTLQNDAYLRYQSYPTADLFRKD 148

Query: 69  LIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++K  P + ++G +Y+  P+D   L      P  KELVFDID+TDYDD+R CC+ A+IC 
Sbjct: 149 ILKMNPSRFEIGPVYNRNPRDRKTLGSGQLKPLAKELVFDIDLTDYDDIRTCCTKANICA 208

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW ++++A K++DTALR+DF FQ +LWV+SGRRG H WVCD  A  L    R  +A Y+
Sbjct: 209 KCWAFVTMAIKVVDTALRQDFGFQHILWVYSGRRGAHAWVCDSRARNLSDDRRRGIAGYL 268

Query: 187 SVLTA--NPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVS 243
            ++    N  K+V L    LHPH+ R+  I++  F +  L +Q+  ++ E++ ++L L+ 
Sbjct: 269 DLVRGGTNSGKRVNLK-RPLHPHMTRSLEILKPYFVQTTLVDQDTFASPEQEQRLLSLLP 327

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN-SDRKLKYAIEEILLELAYPRL 302
           +  +   + ++W          KW  + A+ K  ++   +   L+ A ++I+LE  YPRL
Sbjct: 328 DKGLNDSLRRKWESAPDRSSTNKWADIDALAKAGKSSTLNPATLREAKQDIVLEYTYPRL 387

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           D  VSK + HLLKSPF +HP TG++C
Sbjct: 388 DSEVSKKMIHLLKSPFVIHPGTGRVC 413


>gi|403413528|emb|CCM00228.1| predicted protein [Fibroporia radiculosa]
          Length = 421

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 133/338 (39%), Positives = 204/338 (60%), Gaps = 15/338 (4%)

Query: 6   DPESLT-EMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           D E +T E++  +Y+R++PY     WL + +     F +REF+FTL GD+Y RY S+   
Sbjct: 5   DGEPVTPELMLVFYQRLYPYKSVYGWLNHDHKPTRLFTQREFAFTLPGDVYLRYQSFEDA 64

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           +ELK+ ++K  P + ++G +Y   P+D   ++   F P ++ELVFDIDMTDYD +R CC+
Sbjct: 65  DELKRQIVKLNPSRFEIGPVYSARPRDRKTVRPGKFVPLLRELVFDIDMTDYDPIRTCCA 124

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           GADIC +CW +++ A ++LD ALR+ F +Q LLWV+SGRRGIH W+ D  A+ L    R 
Sbjct: 125 GADICRRCWAFIAAAVRVLDAALRDQFGYQRLLWVYSGRRGIHLWISDTEAMELTDEQRK 184

Query: 181 CLAEYMSVLTANP--VKKVFLTGDV--LHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQ 235
            L  +++V+       KKV +      L P ++ A+  +   F + +L +Q+   +KE  
Sbjct: 185 ALVGWLTVIQGGKDMRKKVNVRQGTRALPPSIRSARDALVSVFSDTVLADQDCFGSKEGW 244

Query: 236 TKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWD---RLVAIIKHHQAKNSDRKLKYA--I 290
            ++L L+ +  + A ++KEW         +KWD   R    IK  +  +S   L +   +
Sbjct: 245 EELLHLLPDQSMVARLQKEWIADSSRSSDDKWDDLKREAKRIKKEKGDHSAAFLNFQNLM 304

Query: 291 EEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           E+I+L+  YPRLD  VSK  NHLLK+PFCVHPKTG++C
Sbjct: 305 EDIVLQYTYPRLDAEVSKHRNHLLKAPFCVHPKTGRVC 342


>gi|119492141|ref|XP_001263541.1| DNA primase subunit Pri1, putative [Neosartorya fischeri NRRL 181]
 gi|119411701|gb|EAW21644.1| DNA primase subunit Pri1, putative [Neosartorya fischeri NRRL 181]
          Length = 520

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/326 (38%), Positives = 201/326 (61%), Gaps = 9/326 (2%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           T+++  +Y+R+FP+    +WL +G +   +F  REF+ TL  D Y RY SY + +  +KD
Sbjct: 91  TDIMLAFYQRLFPFRYLFQWLNHGIIPSPDFGNREFALTLQNDAYLRYQSYATADLFRKD 150

Query: 69  LIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++   P + ++G +Y+  P+D   L+     P  KELVFDID+TDYDD+R+CC+ A+IC 
Sbjct: 151 ILNMNPSRFEIGPVYNTNPRDRKTLRGGQMKPISKELVFDIDLTDYDDIRSCCTKANICR 210

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW ++++A K++DTALREDF F+ +LWV+SGRRG H WVCD  A +L    R  +A Y+
Sbjct: 211 KCWTFVTMAMKVVDTALREDFGFEHILWVYSGRRGAHAWVCDPRARSLPDDRRRAIAGYL 270

Query: 187 SVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVS 243
            V+   +   K+V +    LHPH+ R+  I++  F +  L +Q+  ++ E+  ++L L+ 
Sbjct: 271 DVVRGGSQSGKRVNMKR-PLHPHMSRSLEILKPFFAQTTLVDQDTFASSEQAERLLSLLP 329

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN-SDRKLKYAIEEILLELAYPRL 302
           +  +   + K+W          KW  + A+ K  ++   +   LK A ++I+LE  YPRL
Sbjct: 330 DKTLNDALRKKWDSSPDRSSTNKWADIDALAKTGKSSTLNPTTLKDAKQDIVLEYTYPRL 389

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           D  VSK + HLLKSPF +HP TG++C
Sbjct: 390 DAEVSKKMIHLLKSPFVIHPGTGRVC 415


>gi|121705310|ref|XP_001270918.1| DNA primase subunit Pri1, putative [Aspergillus clavatus NRRL 1]
 gi|119399064|gb|EAW09492.1| DNA primase subunit Pri1, putative [Aspergillus clavatus NRRL 1]
          Length = 514

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 127/326 (38%), Positives = 198/326 (60%), Gaps = 9/326 (2%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           T+++  +Y+R+FP+    +WL +G +   +F  REF+ TL  D Y RY SY + +  +KD
Sbjct: 88  TDIMLAFYQRLFPFRYLFQWLNHGIIPSPDFGNREFALTLQNDAYLRYQSYATADLFRKD 147

Query: 69  LIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           +++  P + ++G +Y+  P+D   L+     P  KELVFDID+TDYDD+R+CC  A+IC 
Sbjct: 148 ILRMNPSRFEIGPVYNANPRDRKTLRGGQMKPVSKELVFDIDLTDYDDIRSCCEKANICR 207

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW ++++A K++DTALREDF F+ +LWV+SGRRG H WVCD  A +L    R  +A Y+
Sbjct: 208 KCWAFVTMAIKVIDTALREDFGFEHILWVYSGRRGAHAWVCDPRARSLPDDRRRAIAGYL 267

Query: 187 SVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVS 243
            V+   A   K+V +    LHPH+ R+  I+   F E  L +Q+   + E+  ++L L+ 
Sbjct: 268 EVVRGGAQSGKRVNMKR-PLHPHMSRSLDILAPFFAETTLVDQDTFGSSEQAERLLALLP 326

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN-SDRKLKYAIEEILLELAYPRL 302
           + ++   + K+W          KW  + A+    ++   +   L  A ++++LE  YPRL
Sbjct: 327 DKELNTALRKKWNSSPNRSSTSKWADIDALASTGRSNTLNTSALLDAKQDVVLEYTYPRL 386

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           D  VSK + HLLKSPF VHP TG++C
Sbjct: 387 DAEVSKKMIHLLKSPFVVHPGTGRVC 412


>gi|326478642|gb|EGE02652.1| DNA primase small subunit [Trichophyton equinum CBS 127.97]
          Length = 520

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 129/333 (38%), Positives = 200/333 (60%), Gaps = 13/333 (3%)

Query: 4   KYDPESLTEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNS 61
           + DPES++     +Y+R+FP+    +WL +G     +F  REF+FTL  D Y RY S+ +
Sbjct: 89  QVDPESMSA----FYQRLFPFKYLFQWLNHGVKPSTDFGNREFAFTLPNDAYLRYQSFQT 144

Query: 62  PNELKKDLIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
            + L K++++  P + ++G +Y   P+D     +   F P  KELVFDID+TDYDD+R C
Sbjct: 145 ADALHKEVMRLNPSRFEIGPVYSTNPRDRKTLRKPGAFKPIAKELVFDIDLTDYDDIRTC 204

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS A+IC KCW +++++ K++D ALR+DF FQ +LWV+SGRRG H WVCD+ A  L    
Sbjct: 205 CSKANICLKCWAFVTMSIKVIDAALRDDFGFQHILWVYSGRRGAHAWVCDKVARNLPDDR 264

Query: 179 RSCLAEYMSVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQ 235
           R  +A Y+ V+   +   K+V L    LHPH+ R+   + + F   +L +Q+  S  ++ 
Sbjct: 265 RRAIAGYLEVVRGGSQSGKRVNLRR-PLHPHITRSIDTLREYFASTVLVDQDPFSRPDQA 323

Query: 236 TKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILL 295
            +++ L+ +  +RA ++K+W          KW  +  + K +      + L  A ++I+L
Sbjct: 324 ARLIELLPDKTLRAALQKKWDSAPGRSSSSKWADIDTVAKANSRGLDTKALLEAKQDIVL 383

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           E  YPRLD  VSK + HLLKSPF VHP TG++C
Sbjct: 384 EYTYPRLDAEVSKKLIHLLKSPFVVHPGTGRVC 416


>gi|70999998|ref|XP_754716.1| DNA primase subunit Pri1 [Aspergillus fumigatus Af293]
 gi|66852353|gb|EAL92678.1| DNA primase subunit Pri1, putative [Aspergillus fumigatus Af293]
 gi|159127725|gb|EDP52840.1| DNA primase subunit Pri1, putative [Aspergillus fumigatus A1163]
          Length = 522

 Score =  251 bits (641), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 127/326 (38%), Positives = 201/326 (61%), Gaps = 9/326 (2%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           T+++  +Y+R+FP+    +WL +G +   +F  REF+ TL  D Y RY SY + +  +KD
Sbjct: 93  TDIMLAFYQRLFPFRYLFQWLNHGIIPSPDFGNREFALTLQNDAYLRYQSYATADLFRKD 152

Query: 69  LIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++K  P + ++G +Y+  P+D   L+     P  KELVFDID+TDYDD+R+CC+ A+IC 
Sbjct: 153 ILKMNPSRFEIGPVYNTNPRDRKTLRGGQMKPISKELVFDIDLTDYDDIRSCCTKANICR 212

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW ++++A K++DTALREDF F+ +LWV+SGRRG H WVCD  A  L    R  +A Y+
Sbjct: 213 KCWTFVTMAMKVVDTALREDFGFEHILWVYSGRRGAHAWVCDARARCLPDDRRRAIAGYL 272

Query: 187 SVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVS 243
            V+   +   K+V +    LHPH+ R+  I++  F +  L +Q+  ++ E+  ++L L+ 
Sbjct: 273 DVVRGGSQSGKRVNIKR-PLHPHMSRSLEILKPFFAQTTLIDQDTFASSEQAERLLSLLP 331

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN-SDRKLKYAIEEILLELAYPRL 302
           +  +   + K+W          KW  + A+ K  ++   +   L+ A ++I+LE  YPRL
Sbjct: 332 DKTLNDALRKKWDSSPGRSSTNKWADIDALAKTGKSSTLNPTTLRDAKQDIVLEYTYPRL 391

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           D  VSK + HLLKSPF +HP TG++C
Sbjct: 392 DAEVSKKMIHLLKSPFVIHPGTGRVC 417


>gi|393244770|gb|EJD52282.1| prim-pol domain-containing protein [Auricularia delicata TFB-10046
           SS5]
          Length = 407

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 133/332 (40%), Positives = 196/332 (59%), Gaps = 24/332 (7%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCP 74
           +Y +++P+ P  RWL  G+     F +REFS TL GDIY RY S+N+ ++ K +L +  P
Sbjct: 4   FYNQLYPFQPIFRWLNQGHQPTKLFTQREFSATLPGDIYLRYHSFNNADDFKANLARLNP 63

Query: 75  QKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYM 132
            + ++GA+Y+  P+D   L+     P+ +E V DIDMTDYD+VR CC+G  IC +CW ++
Sbjct: 64  TRFEIGAVYNARPRDKKTLRAGALQPQQREFVLDIDMTDYDNVRTCCAGKGICARCWGFI 123

Query: 133 SIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL-TA 191
           + A  +LD ALR  F F+ LLWV+SGRRGIHCWV D  A+ L    R  L  ++ V+  A
Sbjct: 124 AAAVCVLDAALRTQFGFKHLLWVYSGRRGIHCWVSDPDAMDLTDDQRRVLMGWLDVVKNA 183

Query: 192 NPVKKVF--LTGDVLHPHLKRAKLIIEDQ---------FEKL-LEEQELLSTKERQTKVL 239
             + K        VLHP +  A  I+  +         F  L LE+Q+   T+E+  K+L
Sbjct: 184 KDMNKRLDARRNGVLHPAISAASHILNPRTGDPTYTHTFHSLVLEDQDCFKTEEQSNKLL 243

Query: 240 GLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD---RKLKYAIEEILLE 296
            L+ + +I + +  EW      +  +KWD L    +   +K  D   + L+ +IE+I+L+
Sbjct: 244 ELLGHAEIASTLRAEWAARPNRKSSDKWDDL----RREVSKRKDPALKALRSSIEDIILQ 299

Query: 297 LAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
             YPRLD+ VSK  NHLLK+PFCVHP TG++C
Sbjct: 300 YMYPRLDMEVSKRRNHLLKAPFCVHPSTGRVC 331


>gi|384252896|gb|EIE26371.1| prim-pol domain-containing protein [Coccomyxa subellipsoidea C-169]
          Length = 447

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 141/345 (40%), Positives = 201/345 (58%), Gaps = 40/345 (11%)

Query: 8   ESLTEMLPFYYKRIFPYGPYLRWLFYGN--------LDNFRKREFSFTLNGDIYARYISY 59
           +S+ +++  YY   FPY  + +WL YGN         + F++REF FTL+GDI+ RY S+
Sbjct: 45  KSVQDLMRPYYGLKFPYNEFCQWLSYGNDTKLPQADSNFFQRREFCFTLDGDIFVRYQSF 104

Query: 60  NSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSV------FTPKMKELVFDIDMTDYD 113
               E+    + + P KID+G +Y++ P+    ++       F P  +ELVFDID+TDYD
Sbjct: 105 KVAAEIHA--LPKLPAKIDIGPVYNVDPQRRKAYTGGASERGFLPVERELVFDIDLTDYD 162

Query: 114 DVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALA 173
           DVR C     IC  CW  M++A +I+D +LREDF F+ +LWVFSGRRGIHCWVCDE A  
Sbjct: 163 DVRTCGKEGHICAACWPLMAVAVEIIDASLREDFGFEHILWVFSGRRGIHCWVCDERARK 222

Query: 174 LDGRGRSCLAEYMSVL--TANPVKKVFLT--GDVLHPHLKRAKLIIEDQF-EKLLEEQEL 228
           L    RS LA ++SV   T   + ++ L+   +  HP ++RA  ++ D + E +L +Q L
Sbjct: 223 LTDEQRSALAAFLSVYKGTEGGIARLALSTVSNSNHPSVERAYRVLSDAWTEHILPQQRL 282

Query: 229 LSTKERQTKVLGLVSNGDIRAEIEKEWT----RIGPGQ-DVEKWDRLVAIIKHHQAKNSD 283
           L+ +     VL  V + D+   +   W     R+  G   VE+W  L + I        D
Sbjct: 283 LADEAGWEGVLAYVKDDDVAERLRGRWAREQGRLTAGDISVERWADLESEI--------D 334

Query: 284 RKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +K      EI+   AYPRLD+ VSK +NHLLK+PFCVHPKTGK+C
Sbjct: 335 KK------EIIFAYAYPRLDVEVSKKMNHLLKAPFCVHPKTGKVC 373


>gi|391347758|ref|XP_003748121.1| PREDICTED: DNA primase small subunit-like [Metaseiulus
           occidentalis]
          Length = 418

 Score =  250 bits (639), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 134/326 (41%), Positives = 199/326 (61%), Gaps = 21/326 (6%)

Query: 10  LTEMLPFYYKRIFPYGPYLRWLFYG---NLDNFRKREFSFTLNGDIYARYISYNSPNELK 66
             + L  YY+++FP   + +WL YG   +   F  REFSFTL GD+Y R++S+     LK
Sbjct: 35  FADELKVYYEKLFPVNIFYKWLSYGRDPSESYFVNREFSFTLEGDLYLRFLSFKDQKMLK 94

Query: 67  KDLIKRCPQKIDLGAIYD-ICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
            +L+K  P KIDLGA+YD I  K + +     P+ +E V DIDMTD+DDVR CC  ADIC
Sbjct: 95  AELVKNNPIKIDLGAVYDNISDKQNRK-----PREREYVLDIDMTDFDDVRICCKDADIC 149

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
            +CW +M+IA + L  AL EDF F+ LLWV+SGRRGIHCWV D  +  +    R+ L  Y
Sbjct: 150 PRCWPFMTIAIRCLHAALTEDFGFRHLLWVYSGRRGIHCWVADRISREMTSSCRNGLTSY 209

Query: 186 MSVLT-ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLVS 243
           + VLT  NP +   ++   +HP ++R  +I+ +  + + + +Q    + E   K+L +  
Sbjct: 210 LDVLTEPNPKRPKIVSK--IHPFMERTLVILREYVDDMVVSKQRWADSTEWWVKILRMYM 267

Query: 244 NGDIRAEIEKEWTRIGPGQD-VEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRL 302
           + + R E+E   +RI   +D   +W+    ++   Q+K    K ++  EE+L  L YPRL
Sbjct: 268 DTEKRDELE---SRIMAEEDGATRWEIFKTVVDQQQSK----KHRFYFEEVLFHLLYPRL 320

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           D++VS G+NHLLK+PFC+HPKT ++C
Sbjct: 321 DVNVSTGLNHLLKAPFCLHPKTNRVC 346


>gi|134083112|emb|CAK46785.1| unnamed protein product [Aspergillus niger]
          Length = 512

 Score =  250 bits (639), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 126/324 (38%), Positives = 194/324 (59%), Gaps = 7/324 (2%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           T+ +  +Y+R+FP+    +WL +G +   +F  REF+ TL  D Y RY SY + +  +KD
Sbjct: 83  TDTMLAFYQRLFPFRYLFQWLNHGIVPSPDFGNREFALTLQNDAYLRYQSYATADLFRKD 142

Query: 69  LIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++K  P + ++G +Y+  P+D   L+     P  KELVFDID+TDYDD+R+CC  A+IC 
Sbjct: 143 ILKMNPSRFEIGPVYNTNPRDRKTLRGGQMKPIAKELVFDIDLTDYDDIRSCCEKANICS 202

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW ++++A K++DTALREDF F+ +LWV+SGRRG H WVCD  A  L    R  +A Y+
Sbjct: 203 KCWAFVTMAMKVVDTALREDFGFEHILWVYSGRRGAHAWVCDPRARNLPDDRRRAIAGYL 262

Query: 187 SVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVSNG 245
            V+         +    LHPH+ R+  I++  F +  L +QE   +++ Q ++L L+ + 
Sbjct: 263 DVIRGGNSSGKRVLKRPLHPHMSRSLEILKPYFAQTTLVDQETFGSEQAQ-RLLSLLPDK 321

Query: 246 DIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN-SDRKLKYAIEEILLELAYPRLDI 304
            +   + K W          KW  + A+ K  ++   +   L+ A ++I+LE  YPRLD 
Sbjct: 322 GLNESLRKRWESSPDRSSANKWADIDALAKTGKSSTLNPTTLRDAKQDIVLEYTYPRLDS 381

Query: 305 HVSKGVNHLLKSPFCVHPKTGKIC 328
            VSK + HLLKSPF +HP TG++C
Sbjct: 382 EVSKKMIHLLKSPFVIHPGTGRVC 405


>gi|238484545|ref|XP_002373511.1| DNA primase subunit Pri1, putative [Aspergillus flavus NRRL3357]
 gi|220701561|gb|EED57899.1| DNA primase subunit Pri1, putative [Aspergillus flavus NRRL3357]
          Length = 524

 Score =  250 bits (639), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 131/328 (39%), Positives = 197/328 (60%), Gaps = 13/328 (3%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           T+ +  +Y+R+FP+    +WL +G +   +F  REF+ TL  D Y RY SY + +  +KD
Sbjct: 93  TDTMLAFYQRLFPFRYLFQWLNHGIVPSPDFGNREFALTLQNDAYLRYQSYATADLFRKD 152

Query: 69  LIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           +++  P + ++G +Y+  P+D   L+     P  KELVFDID+TDYDD+R+CC  A+IC 
Sbjct: 153 ILRMNPSRFEIGPVYNTNPRDRKTLRGGQMKPVSKELVFDIDLTDYDDIRSCCEKANICG 212

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW ++++A K++DTALR+DF FQ +LWV+SGRRG H WVCD  A +L    R  +A Y+
Sbjct: 213 KCWTFVTMAMKVVDTALRDDFGFQHILWVYSGRRGAHAWVCDPRARSLPDDRRRAIAGYL 272

Query: 187 SVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVS 243
            +L   A   K+V L    LHPH+ R+  I++  F +  L +Q+   + E+  ++L L+ 
Sbjct: 273 DLLRGGAQSGKRVNLKR-PLHPHMSRSLEILKPYFAQTTLVDQDTFVSSEQAQRLLALLP 331

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKW---DRLVAIIKHHQAKNSDRKLKYAIEEILLELAYP 300
           +  +   + K+W          KW   D L    K    K S   L+ A ++I+LE  YP
Sbjct: 332 DKALNDALRKKWESSPDRSSTNKWADIDSLAKTGKSSTLKTS--TLREAKQDIVLEYTYP 389

Query: 301 RLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           RLD  VSK + HLLKSPF +HP TG++C
Sbjct: 390 RLDSEVSKKMIHLLKSPFVIHPGTGRVC 417


>gi|170591316|ref|XP_001900416.1| DNA primase, eukaryotic-type, small subunit family protein [Brugia
           malayi]
 gi|158592028|gb|EDP30630.1| DNA primase, eukaryotic-type, small subunit, putative family
           protein [Brugia malayi]
          Length = 408

 Score =  250 bits (639), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 146/355 (41%), Positives = 206/355 (58%), Gaps = 37/355 (10%)

Query: 1   MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYIS 58
           MAD +D   L + LP YY+R+FP+ P  +WL YG     +F+ RE +F    D +ARY S
Sbjct: 1   MAD-FDTSLLQQTLPEYYRRLFPFEPLCKWLAYGEDFQVSFQMRELAFVFEDDRHARYRS 59

Query: 59  YNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           +    + +++L K  PQKID+GA+Y+  PKDH + + F P  +EL+FDID+TDYDD+R C
Sbjct: 60  FEDSADFERELCKANPQKIDIGAVYNYKPKDHKKFADFHPVERELIFDIDLTDYDDIRTC 119

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS A +C KCWR++SIA  IL+  L+  F F+  LWVFSGRRGIHCWV D  A  L   G
Sbjct: 120 CSKAKVCRKCWRWISIAVGILNYLLQRHFGFKHCLWVFSGRRGIHCWVADAVARKLQNAG 179

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHP-------HLKRAKLIIEDQFEKLLEEQELLS 230
           R  + EY+S++T    + K       +HP       +L +  L + D  E +LE+  + +
Sbjct: 180 RMAVVEYLSLVTGGQKISKAASKRAFVHPMVEDVYNYLMQWSLSVPDVGELMLEQGWMSN 239

Query: 231 TKERQTKVLGLVS--NGDIRAEIEKEWTRIGPGQDV-----EKWDRL-VAIIKHHQA--- 279
                    GL+S  +G +  E+EKE + I           ++W+ L +   K+ +A   
Sbjct: 240 D--------GLMSLLDGCVNEEVEKEISEIIVEVKTVDCLKKRWNALRIKFDKYKRAELK 291

Query: 280 KN-------SDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           KN       +  +  +     +L+ AYPRLDIHVS G+NHLLKSPFCVHPKTG I
Sbjct: 292 KNGIELCEVASPQSSFHFRGYVLQHAYPRLDIHVSTGINHLLKSPFCVHPKTGLI 346


>gi|294656763|ref|XP_459079.2| DEHA2D13838p [Debaryomyces hansenii CBS767]
 gi|199431724|emb|CAG87247.2| DEHA2D13838p [Debaryomyces hansenii CBS767]
          Length = 484

 Score =  250 bits (639), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 132/335 (39%), Positives = 196/335 (58%), Gaps = 20/335 (5%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + FYY+R+ P+    +WL +      +F  REF++      Y RY SY + +E KK ++K
Sbjct: 45  MAFYYERLLPFRYVFQWLNHSPKPTKDFTMREFAYEFRSGAYQRYNSYMTLDEFKKSVVK 104

Query: 72  RCPQKIDLGAIYDICPKD--HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GA+Y + P++  +L  S   P  KELVFDID+TDYDD+R CCSG DIC+KCW
Sbjct: 105 ANPTRFEVGAVYSVNPRERKNLPKSALKPLNKELVFDIDLTDYDDIRTCCSGTDICKKCW 164

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           +++ +A KI+D ALREDF F+ L+WVFSGRRG HCWV D  A  LD   R  + EY+ VL
Sbjct: 165 KFIQVASKIIDQALREDFGFKHLIWVFSGRRGAHCWVSDNNARTLDEITRKSIVEYLDVL 224

Query: 190 TANPV---KKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTK----------ERQ 235
            +      KK        HPH++R+  I++ +F   +LEEQ+   T           E+ 
Sbjct: 225 GSKQSKIGKKSLNLKRPFHPHVERSFNILKQEFVNIILEEQDPWFTSADSSSDSKAWEKV 284

Query: 236 TKVLGLVSNGDIRAEIEKEWTRIGP-GQDVEKWDRLVAIIKHH-QAKNSDRKLKYAIEEI 293
            ++L  + +  ++ E+ ++W           KW+ +  I K   + +N   +L  A ++I
Sbjct: 285 EELLAFMPDISLQEELRQKWKEQRTLSTSKSKWEDINTIAKKTLKHQNQVNQLNEAKKDI 344

Query: 294 LLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           ++   YPRLDI VSK + HLLKSPFC+HP TG +C
Sbjct: 345 IVYYMYPRLDIEVSKQLIHLLKSPFCIHPGTGNVC 379


>gi|58268142|ref|XP_571227.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57227461|gb|AAW43920.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 429

 Score =  250 bits (638), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 132/338 (39%), Positives = 200/338 (59%), Gaps = 14/338 (4%)

Query: 4   KYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNS 61
           +YD  S  +++  +Y+R+FPY P   WL    + +  F  REF+FTL GD+Y RY S+N+
Sbjct: 12  EYDASS-PQVMQLFYRRLFPYRPLYLWLNQEQIPSKLFTHREFAFTLAGDVYLRYQSFNN 70

Query: 62  PNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCC 119
            +E K  + +  P + ++G  Y   PKD   L      P+ +ELVFDIDMTDYD++R CC
Sbjct: 71  VDEFKASIARHIPSRFEIGPQYSARPKDRKTLASGALQPQRRELVFDIDMTDYDEIRTCC 130

Query: 120 SGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGR 179
           +   IC++CW +++ A K+LD +LRE F F+ LLWV+SGRRGIHCW+ D++AL L    R
Sbjct: 131 TDKTICKRCWGFIAAAVKVLDHSLRETFGFKHLLWVYSGRRGIHCWISDQSALDLTDDQR 190

Query: 180 SCLAEYMSVLTAN--PVKKVFL---TGD-VLHPHLKRAKLIIEDQFEKL-LEEQELLSTK 232
             L  ++ V+       KKV +   TGD  LHP L  A   ++  F  L + +Q+    +
Sbjct: 191 RALVTFLEVIKGGKEQSKKVNVRGPTGDAALHPFLSEALDTLKPLFSSLCIYDQDCFKGE 250

Query: 233 ERQTKVLGLV-SNGDIRAEIEKEWTRIGPGQDVEKWDRLVA-IIKHHQAKNSDRKLKYAI 290
           +    +L ++ ++  +   +  +W +       EKW  L++ I KH + +    K   A+
Sbjct: 251 KGWEALLAILPTDRTVIGPLRAKWEKNSDSSSEEKWRELMSEIAKHKKEEAIMTKFTKAV 310

Query: 291 EEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           E+++L+  YPR+D  VSK  NHLLKSPFCVHP TG++C
Sbjct: 311 EDVVLQYTYPRIDAEVSKHRNHLLKSPFCVHPGTGRVC 348


>gi|169767636|ref|XP_001818289.1| DNA primase small subunit [Aspergillus oryzae RIB40]
 gi|83766144|dbj|BAE56287.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|391873278|gb|EIT82331.1| eukaryotic-type DNA primase, catalytic (small) subunit [Aspergillus
           oryzae 3.042]
          Length = 524

 Score =  250 bits (638), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 131/328 (39%), Positives = 197/328 (60%), Gaps = 13/328 (3%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           T+ +  +Y+R+FP+    +WL +G +   +F  REF+ TL  D Y RY SY + +  +KD
Sbjct: 93  TDTMLAFYQRLFPFRYLFQWLNHGIVPSPDFGNREFALTLQNDAYLRYQSYATADLFRKD 152

Query: 69  LIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           +++  P + ++G +Y+  P+D   L+     P  KELVFDID+TDYDD+R+CC  A+IC 
Sbjct: 153 ILRMNPSRFEIGPVYNTNPRDRKTLRGGQMKPVSKELVFDIDLTDYDDIRSCCEKANICG 212

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW ++++A K++DTALR+DF FQ +LWV+SGRRG H WVCD  A +L    R  +A Y+
Sbjct: 213 KCWTFVTMAMKVVDTALRDDFGFQHILWVYSGRRGAHAWVCDPRARSLPDDRRRAIAGYL 272

Query: 187 SVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVS 243
            +L   A   K+V L    LHPH+ R+  I++  F +  L +Q+   + E+  ++L L+ 
Sbjct: 273 DLLRGGAQSGKRVNLKR-PLHPHMSRSLEILKPYFAQTTLVDQDTFVSSEQAQRLLALLP 331

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKW---DRLVAIIKHHQAKNSDRKLKYAIEEILLELAYP 300
           +  +   + K+W          KW   D L    K    K S   L+ A ++I+LE  YP
Sbjct: 332 DKALNDALRKKWESSPDRSSTNKWADIDSLAKTGKSSTLKTS--TLREAKQDIVLEYTYP 389

Query: 301 RLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           RLD  VSK + HLLKSPF +HP TG++C
Sbjct: 390 RLDSEVSKKMIHLLKSPFVIHPGTGRVC 417


>gi|190344685|gb|EDK36413.2| hypothetical protein PGUG_00511 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 464

 Score =  249 bits (637), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 136/341 (39%), Positives = 199/341 (58%), Gaps = 24/341 (7%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELK 66
           S ++ML F+Y+R+ P+    +WL +      +F  REF++      Y RY S+++  E K
Sbjct: 23  SSSDML-FFYQRLLPFRQIFQWLNHSPKPSKDFTMREFAYEYRTGAYQRYNSFSNLEEFK 81

Query: 67  KDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADI 124
           K +++  P + ++GA+Y + PK+   L      P  KELVFDID+TDYD++R CCSG DI
Sbjct: 82  KSVVQANPTRFEVGAVYSVNPKERKRLPKQALKPLAKELVFDIDLTDYDEIRTCCSGTDI 141

Query: 125 CEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAE 184
           C+KCWR++ +A KILD ALREDF F  L+WVFSGRRG HCWV D  A  LD   R  + E
Sbjct: 142 CKKCWRFIQVAIKILDAALREDFGFNRLIWVFSGRRGAHCWVSDARARCLDETTRKSIVE 201

Query: 185 YMSVLTANPV---KKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTK-------- 232
           Y+ VL +      K         HPH++R+  +++++F + +L+EQ+  +T         
Sbjct: 202 YLDVLGSRSNRQGKNSLSLKRPFHPHVERSFDLLKNEFVDIILKEQDPWNTSSSEPSDKS 261

Query: 233 -ERQTKVLGLVSNGDIRAEIEKEW-TRIGPGQDVEKWDRLVAIIK---HHQAKNSDRKLK 287
            E+   +L  V    ++ E+ ++W ++      + KW+ +  I K    HQ  N    L 
Sbjct: 262 WEQVETLLSYVPEKPLQEELRRKWKSQTSVSTSMSKWEDITVIAKKILKHQ--NQVNALN 319

Query: 288 YAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            A ++I+L   YPRLDI VSK + HLLKSPFCVHP TG IC
Sbjct: 320 EAKKDIILFYMYPRLDIEVSKQLIHLLKSPFCVHPSTGNIC 360


>gi|134111825|ref|XP_775448.1| hypothetical protein CNBE1630 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258107|gb|EAL20801.1| hypothetical protein CNBE1630 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 429

 Score =  249 bits (637), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 132/338 (39%), Positives = 200/338 (59%), Gaps = 14/338 (4%)

Query: 4   KYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNS 61
           +YD  S  +++  +Y+R+FPY P   WL    + +  F  REF+FTL GD+Y RY S+N+
Sbjct: 12  EYDASS-PQVMQLFYRRLFPYRPLYLWLNQEQIPSKLFTHREFAFTLAGDVYLRYQSFNN 70

Query: 62  PNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCC 119
            +E K  + +  P + ++G  Y   PKD   L      P+ +ELVFDIDMTDYD++R CC
Sbjct: 71  VDEFKASIARHIPSRFEIGPQYSARPKDRKTLASGALQPQRRELVFDIDMTDYDEIRTCC 130

Query: 120 SGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGR 179
           +   IC++CW +++ A K+LD +LRE F F+ LLWV+SGRRGIHCW+ D++AL L    R
Sbjct: 131 TDKTICKRCWGFIAAAVKVLDHSLRETFGFKHLLWVYSGRRGIHCWISDQSALDLTDDQR 190

Query: 180 SCLAEYMSVLTAN--PVKKVFL---TGD-VLHPHLKRAKLIIEDQFEKL-LEEQELLSTK 232
             L  ++ V+       KKV +   TGD  LHP L  A   ++  F  L + +Q+    +
Sbjct: 191 RALVTFLEVIKGGKEQSKKVNVRGPTGDAALHPFLSEALDTLKPLFSSLCIYDQDCFKGE 250

Query: 233 ERQTKVLGLV-SNGDIRAEIEKEWTRIGPGQDVEKWDRLVA-IIKHHQAKNSDRKLKYAI 290
           +    +L ++ ++  +   +  +W +       EKW  L++ I KH + +    K   A+
Sbjct: 251 KGWEALLAILPTDRAVIGPLRAKWEKNSDSSSEEKWRELMSEIAKHKKEEAIMTKFTKAV 310

Query: 291 EEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           E+++L+  YPR+D  VSK  NHLLKSPFCVHP TG++C
Sbjct: 311 EDVVLQYTYPRIDAEVSKHRNHLLKSPFCVHPGTGRVC 348


>gi|146422390|ref|XP_001487134.1| hypothetical protein PGUG_00511 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 464

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 138/341 (40%), Positives = 201/341 (58%), Gaps = 24/341 (7%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELK 66
           S ++ML F+Y+R+ P+    +WL +      +F  REF++      Y RY S+++  E K
Sbjct: 23  SSSDML-FFYQRLLPFRQIFQWLNHSPKPSKDFTMREFAYEYRTGAYQRYNSFSNLEEFK 81

Query: 67  KDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADI 124
           K +++  P + ++GA+Y + PK+   L      P  KELVFDID+TDYD++R CCSG DI
Sbjct: 82  KSVVQANPTRFEVGAVYSVNPKERKRLPKQALKPLAKELVFDIDLTDYDEIRTCCSGTDI 141

Query: 125 CEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAE 184
           C+KCWR++ +A KILD ALREDF F  L+WVFSGRRG HCWV D  A  LD   R  + E
Sbjct: 142 CKKCWRFIQVAIKILDAALREDFGFNRLIWVFSGRRGAHCWVSDARARCLDETTRKSIVE 201

Query: 185 YMSVLTA--NPVKKVFLT-GDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTK-------- 232
           Y+ VL +  N   K  L+     HPH++R+  +++++F + +L+EQ+  +T         
Sbjct: 202 YLDVLGSRLNRQGKNLLSLKRPFHPHVERSFDLLKNEFVDIILKEQDPWNTSSSEPSDKS 261

Query: 233 -ERQTKVLGLVSNGDIRAEIEKEWT-RIGPGQDVEKWDRLVAIIK---HHQAKNSDRKLK 287
            E+   +L  V    ++ E+ ++W  +      + KW+ +  I K    HQ  N    L 
Sbjct: 262 WEQVETLLSYVPEKPLQEELRRKWKLQTSVSTSMSKWEDITVIAKKILKHQ--NQVNALN 319

Query: 288 YAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            A ++I+L   YPRLDI VSK + HLLKSPFCVHP TG IC
Sbjct: 320 EAKKDIILFYMYPRLDIEVSKQLIHLLKSPFCVHPSTGNIC 360


>gi|392561742|gb|EIW54923.1| prim-pol domain-containing protein [Trametes versicolor FP-101664
           SS1]
          Length = 413

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 132/331 (39%), Positives = 193/331 (58%), Gaps = 16/331 (4%)

Query: 13  MLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELKKDLI 70
           ML FY +R++P+     WL + +  +  F  REF+FTL GD+Y RY S+ +  ELKK + 
Sbjct: 1   MLAFY-RRLYPFKSLFTWLNHEHAPSKLFTHREFAFTLQGDVYLRYNSFANAEELKKQVC 59

Query: 71  KRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKC 128
              P + ++G +Y   P+D   ++ + F+P+++ELVFDIDMTDYD +R CCSGADIC +C
Sbjct: 60  SLNPTRFEIGPVYSARPRDKKTVRPAAFSPQLRELVFDIDMTDYDPIRTCCSGADICRRC 119

Query: 129 WRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSV 188
           W Y+S A ++LD ALR+ F ++ LLWV+SGRRGIH W+ D  ALAL    R  L  +++V
Sbjct: 120 WTYISAAVRVLDRALRDQFGYRHLLWVYSGRRGIHLWISDAEALALTDDQRRALVGWLTV 179

Query: 189 LTANPVK----KVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLVS 243
           +           V +    L P L  A   +E  F  L L +Q+  ++++    +L L+ 
Sbjct: 180 IQGGKEMHKKVNVRVGAKPLPPSLASALKTLEPTFHDLVLADQDCFASEDGWEALLHLIP 239

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK------LKYAIEEILLEL 297
           + ++  E+ + W          KW  L   I   + K   R+      L  A E+I+L+ 
Sbjct: 240 DREVVRELREHWEAHPDRSSEAKWQDLEDSIAQRRGKKDQRERNTFAALTAAKEDIILQY 299

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            YPRLD  VSK  NHLLK+PFCVHPKTG++C
Sbjct: 300 TYPRLDAEVSKHRNHLLKAPFCVHPKTGRVC 330


>gi|449544660|gb|EMD35633.1| hypothetical protein CERSUDRAFT_139515 [Ceriporiopsis subvermispora
           B]
          Length = 403

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 127/322 (39%), Positives = 192/322 (59%), Gaps = 10/322 (3%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCP 74
           +Y+R++P+     WL + +     F  REF+FTL GDIY RY S+N+  +LKK + +  P
Sbjct: 4   FYRRLYPFRSIFGWLNHEHAPTKLFTHREFAFTLQGDIYLRYNSFNTAEDLKKQVCQLNP 63

Query: 75  QKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYM 132
            + ++G IY   P+D   ++ + FTP ++ELVFDIDMTDYD +R CCSGADIC +CW ++
Sbjct: 64  TRFEIGPIYSARPRDKKTVRPTAFTPLLRELVFDIDMTDYDTIRTCCSGADICARCWVFI 123

Query: 133 SIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTAN 192
           S A +++D  +RE F ++ LLWV+SGRRGIH W+ D+ A+ L    R  L  +M V+   
Sbjct: 124 SAAVRVIDEGIREQFGYKHLLWVYSGRRGIHLWISDKEAMELTDEQRRALVGWMMVIQGG 183

Query: 193 PVK----KVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLVSNGDI 247
                   V +    L P L+ +   + D F  L LE+Q+   ++E    +L L+ + ++
Sbjct: 184 KEMHKKVNVRIGSRPLPPSLQMSLSNLVDVFGDLILEDQDCFRSREGWEALLHLIPDNNV 243

Query: 248 RAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDR-KLKYAIEEILLELAYPRLDIHV 306
              + K+W +       +KW  L + +         R  LK A+E+I+L+  YPRLD  V
Sbjct: 244 VETLRKQWEKDPDRSSSDKWGDLKSQVSALVKGTPKRAALKAAMEDIILQYTYPRLDAEV 303

Query: 307 SKGVNHLLKSPFCVHPKTGKIC 328
           SK  NHLLK+PFC+HPKTG++C
Sbjct: 304 SKHRNHLLKAPFCIHPKTGRVC 325


>gi|401880844|gb|EJT45155.1| DNA primase small subunit [Trichosporon asahii var. asahii CBS
           2479]
          Length = 427

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 133/332 (40%), Positives = 197/332 (59%), Gaps = 20/332 (6%)

Query: 6   DPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPN 63
           DP S  E++  +YKR+FPY    RWL  G++    +  REF+FT+  D+Y RY S+++  
Sbjct: 5   DPSS-REVMRAFYKRLFPYKAVYRWLNQGDVPGKLWTHREFAFTIENDVYIRYQSFSTAY 63

Query: 64  ELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
           + +K++++  P + ++G  Y   P+D   L      P+ +ELVFDIDMTDYD++R CCS 
Sbjct: 64  DFQKEVLRLLPSRFEIGPQYSAKPRDRKTLPAGALQPERRELVFDIDMTDYDEIRTCCSD 123

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
             IC +CW +++ A K+LD ALRE F F+ LLWV+SGRRGIHCW+ D  A+ L    R  
Sbjct: 124 KAICARCWGFIAAAVKVLDKALRETFGFKHLLWVYSGRRGIHCWISDTLAMDLTDDQRRA 183

Query: 182 LAEYMSVLTAN--PVKKVFLTG---DVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQT 236
           L  ++ V+      VKKV + G     LHP L R  LI+EDQ       +   S +   T
Sbjct: 184 LTMFLEVIKGGKEQVKKVNVRGLGDADLHPSLNR--LILEDQ-------ECFRSERGWHT 234

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLE 296
            +  L ++ +++  +  EW          +W++L+A +   +   + RK K AIE+++L+
Sbjct: 235 LLELLPADREVKDALRAEWESQPDASSTTRWEQLMAHMP-RKGTPAYRKYKNAIEDVILQ 293

Query: 297 LAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
             YPR+D  VSK  NHLLKSPFCVHP TG++C
Sbjct: 294 YTYPRIDAEVSKHRNHLLKSPFCVHPGTGRVC 325


>gi|405120676|gb|AFR95446.1| DNA primase small subunit [Cryptococcus neoformans var. grubii H99]
          Length = 429

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/338 (39%), Positives = 200/338 (59%), Gaps = 14/338 (4%)

Query: 4   KYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNS 61
           +YD  S  +++  +Y+R+FPY P   WL    + +  F  REF+FTL GD+Y RY S+N+
Sbjct: 12  EYDASS-PQVMQLFYRRLFPYRPLYLWLNQEQIPSKLFTHREFAFTLAGDVYLRYQSFNN 70

Query: 62  PNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCC 119
            +E K  + +  P + ++G  Y   PKD   L      P+ +ELVFDIDMTDYD++R CC
Sbjct: 71  VDEFKVSIARHIPSRFEIGPQYSARPKDRKTLASGALQPQRRELVFDIDMTDYDEIRTCC 130

Query: 120 SGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGR 179
           +   IC +CW +++ A K+LD +LRE F F+ LLWV+SGRRGIHCW+ D++AL L    R
Sbjct: 131 TDKTICRRCWGFIAAAVKVLDHSLRETFGFKHLLWVYSGRRGIHCWISDQSALDLTDDQR 190

Query: 180 SCLAEYMSVLTANPV--KKVFL---TGD-VLHPHLKRAKLIIEDQFEKL-LEEQELLSTK 232
             L  ++ V+       KKV +   TGD  LHP L  A   ++  F  L + +Q+    +
Sbjct: 191 RALVTFLEVIKGGKEQNKKVNVRGPTGDAALHPFLSEALDTLKPLFSSLCIYDQDCFKGE 250

Query: 233 ERQTKVLGLV-SNGDIRAEIEKEWTRIGPGQDVEKWDRLVA-IIKHHQAKNSDRKLKYAI 290
           +    +L ++ ++  +   +  +W +       EKW  L++ I KH + + +  K   AI
Sbjct: 251 KGWEALLAILPTDRTVIGPLRAKWEKNPDSSSDEKWRELMSEIAKHKKEEATMTKFTKAI 310

Query: 291 EEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           E+++L+  YPR+D  VSK  NHLLKSPFCVHP TG++C
Sbjct: 311 EDVVLQYTYPRIDAEVSKHRNHLLKSPFCVHPGTGRVC 348


>gi|302758980|ref|XP_002962913.1| hypothetical protein SELMODRAFT_78525 [Selaginella moellendorffii]
 gi|300169774|gb|EFJ36376.1| hypothetical protein SELMODRAFT_78525 [Selaginella moellendorffii]
          Length = 363

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 140/306 (45%), Positives = 188/306 (61%), Gaps = 17/306 (5%)

Query: 39  FRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHS---- 94
           F +REFSFTL  DIY RY+S+   +E +  + ++ PQKID+GA+Y + P   L ++    
Sbjct: 16  FGRREFSFTLENDIYLRYMSFRDASEFEATVCEKRPQKIDIGAVYSVDPAKRLAYASVSN 75

Query: 95  --VFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLL 152
             VF P  KELVFD+DMTDYDD+RNCCSGADIC KCW  M+IA K++D+ LREDF F  +
Sbjct: 76  DRVFAPVEKELVFDVDMTDYDDIRNCCSGADICLKCWPLMTIAIKVVDSTLREDFGFDHI 135

Query: 153 LWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANP--VKKVFLTGDVLHPHLKR 210
           LWV+SGRRG+HCWVCD  A  L    R+ +A+Y  V   N    +KV L    LHP L R
Sbjct: 136 LWVYSGRRGVHCWVCDARARKLTNEQRASIADYFRVYKGNENNNRKVSLPTH-LHPFLAR 194

Query: 211 AKLIIEDQF--EKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKW- 267
                  ++  E++L +Q LL  +E   KVL LVS   +  +         P Q  EK  
Sbjct: 195 TYSQFLSRYFDEEILIKQSLLHPQENADKVLKLVSGQGMSMQYMSSAYSELPVQLEEKKR 254

Query: 268 -DRLVA-IIKHHQAKNSDRKL--KYAIE-EILLELAYPRLDIHVSKGVNHLLKSPFCVHP 322
            +RL+   I   +  +  RKL  K  I+ E++    YPRLD+ V+K +NHLLK+PFC+HP
Sbjct: 255 NNRLLPDEINRQRWADLQRKLMQKRGIQVELVFTYTYPRLDLEVTKKMNHLLKAPFCIHP 314

Query: 323 KTGKIC 328
           KTG++C
Sbjct: 315 KTGRVC 320


>gi|358060656|dbj|GAA93652.1| hypothetical protein E5Q_00297 [Mixia osmundae IAM 14324]
          Length = 539

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/334 (39%), Positives = 201/334 (60%), Gaps = 17/334 (5%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSP 62
           YD  S   ++  +Y R+FP+    RWL        N+  RE +FTL  D+Y RY S+ + 
Sbjct: 137 YDDVSNPSVMKLFYARLFPFRQLFRWLNGSEKPNSNWTHRELAFTLANDVYLRYQSFTND 196

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
            +L+K++++  P + ++G IY   P+D   +  + F P  +ELV DIDM +YD +R CC+
Sbjct: 197 ADLRKEILRLNPSRFEIGPIYTSRPRDRRTVNKAAFKPVRRELVMDIDMDEYDAIRTCCT 256

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           G  IC++CW ++++A K+LDTALREDF F+ LLWV+SGRRGIHCW+ D AA +L+   R 
Sbjct: 257 GKKICKRCWGFIAMAAKVLDTALREDFGFEHLLWVYSGRRGIHCWISDPAACSLNDDQRR 316

Query: 181 CLAEYMSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTK 237
            +  Y+ V+       KKV L    LHP LKRA   ++  F   +L++Q+   T ER   
Sbjct: 317 AIVNYLEVIKGGGGQDKKVNLHRP-LHPSLKRAYEQLKPYFNDVILKDQDAFDTDERWEA 375

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVE---KWDRLVAIIKHHQAKNSDRKLKYAIEEIL 294
           +L +V + D+      EWT    G+++    KW  L++ +  ++ K  +   K  +E+++
Sbjct: 376 LLRIVPD-DVANRCRAEWT----GKNISSSLKWRDLLSSVGKYKTKGKE-SAKDIVEDVI 429

Query: 295 LELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           L+  YPRLD  VSK +NHLLKSPF VHP TG++C
Sbjct: 430 LQYTYPRLDAEVSKHLNHLLKSPFVVHPGTGRVC 463


>gi|443897736|dbj|GAC75075.1| eukaryotic-type DNA primase, catalytic [Pseudozyma antarctica T-34]
          Length = 490

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 141/354 (39%), Positives = 202/354 (57%), Gaps = 35/354 (9%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYG-----NLDNFRKREFSFTLNGDIYARYI 57
           D  DP S   ML FY +R+FP+     WL +          F  REF+FTL  + Y RY 
Sbjct: 47  DSSDPMS---MLSFY-RRLFPWKQLFSWLNHDLAHMPATKCFTHREFAFTLQNEAYLRYN 102

Query: 58  SYNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDV 115
           S++S +ELKK++ +  P + ++G +Y   PKD   +Q + F P  +ELVFDIDMTDYD+V
Sbjct: 103 SFSSADELKKEVCRLNPARFEIGPVYTAKPKDRKTVQKASFKPVQRELVFDIDMTDYDEV 162

Query: 116 RNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALD 175
           R CCSG  IC++CW ++++A ++LD ALREDF F+ LLWV+SGRRGIH W+ D  A  L 
Sbjct: 163 RTCCSGKGICKRCWAFIAVAVQVLDEALREDFGFKHLLWVYSGRRGIHVWISDREAFDLA 222

Query: 176 GRGRSCLAEYMSVLT--ANPVKKV------FLTGDVLHPHLKRA-----------KLIIE 216
              R  +  ++ V+   A+ VKKV         G  LHP L+RA           KL   
Sbjct: 223 DDARKAIVGWLEVIKGGASQVKKVDAGWMGSAGGRSLHPSLRRAIGGEGSESGPLKLAFV 282

Query: 217 DQFEKLLEEQELLSTKERQTKVLGLVSNGDIRA--EIEKEWTRIGPGQDVEKWDRLVAII 274
           D    +L++Q+   T E+   +L L+ + +  A  ++  +W R      +EKW  ++   
Sbjct: 283 D---TVLKDQDCFRTPEQWAVLLQLLPSSEAEAIEKLRSKWERASNRPSLEKWQDVMECA 339

Query: 275 KHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +      S R  +  +E+I+L+  YPR+D  VSK +NHLLKSPF VHP TGK+C
Sbjct: 340 QRAGEYKSQRLWRPCLEDIILQYTYPRIDAEVSKHLNHLLKSPFVVHPATGKVC 393


>gi|395326898|gb|EJF59302.1| prim-pol domain-containing protein [Dichomitus squalens LYAD-421
           SS1]
          Length = 421

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 129/326 (39%), Positives = 198/326 (60%), Gaps = 15/326 (4%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCP 74
           +Y+R++P+     WL + +     F  REF+FTL GD+Y RY S+ + ++LKK +    P
Sbjct: 4   FYRRLYPFKSLFTWLNHEHAPTKLFTHREFAFTLQGDVYLRYNSFATSDDLKKQVCAYNP 63

Query: 75  QKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYM 132
            + ++G +Y   P+D   ++ + F+P+++ELVFDIDM+DYD VR CC+ ADIC +CW+++
Sbjct: 64  TRFEIGPVYSARPRDKKTVRPAAFSPQLRELVFDIDMSDYDPVRTCCAAADICRRCWQFI 123

Query: 133 SIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTAN 192
           + A ++LD ALR+ F +  LLWV+SGRRGIH W+ D  AL L    R  L  +++V+   
Sbjct: 124 AAAVRVLDRALRDQFGYTHLLWVYSGRRGIHLWISDRQALELTDEQRRALIGWLTVIQGG 183

Query: 193 PVK----KVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLVSNGDI 247
                   V + G  L P L +A  ++E  F +L L++Q+L +++ER   +L LV +  +
Sbjct: 184 KEMHKKVNVRVGGKALPPSLGQAYKMLEPVFHELILDDQDLFASEERWEALLHLVPDA-V 242

Query: 248 RAEIEKEWTRIGPGQDVEKW----DRLVAIIKHHQAKNSDRKLKYAI-EEILLELAYPRL 302
           R +++  W R       +KW    D L A     +   S  +   AI E+I+L+  YPRL
Sbjct: 243 REKLKNAWERDPHRASADKWQNVLDELDAWKPPARHAASQTQTPAAIKEDIVLQYTYPRL 302

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           D  VSK  NHLLK+PFCVHPKTG++C
Sbjct: 303 DAEVSKHRNHLLKAPFCVHPKTGRVC 328


>gi|393224449|gb|EJD32837.1| prim-pol domain-containing protein [Auricularia delicata TFB-10046
           SS5]
          Length = 416

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 205/349 (58%), Gaps = 30/349 (8%)

Query: 1   MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYIS 58
           M++ YDPE++      +Y +++P+    RWL  G+     F +REFS TL GDIY RY S
Sbjct: 1   MSEGYDPETMKR----FYNQLYPFKSIFRWLNQGDQPTKLFTQREFSATLPGDIYLRYHS 56

Query: 59  YNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVR 116
           ++S ++ K +L +  P + ++GA+Y++ P++   L+     P+ +E V DIDMTDYD+VR
Sbjct: 57  FDSADDFKANLARLNPTRFEIGAVYNVRPRERKTLRAGALQPQQREFVLDIDMTDYDNVR 116

Query: 117 NCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDG 176
            CC+G  IC +CW +++ A ++LD ALR  F F  LLWV+SGRRGIHCWV D  A+ L  
Sbjct: 117 TCCAGKGICSRCWGFIAAAVRVLDAALRTQFGFNHLLWVYSGRRGIHCWVSDADAMNLTD 176

Query: 177 RGRSCLAEYMSVL-TANPVKKVF--LTGDVLHPHLKRAKLIIEDQ---------FEKL-L 223
             R  +  ++ V  +A  + K        VLHP +  A  I+  +         F+ L L
Sbjct: 177 DQRRAIMGWLDVFKSAKGMTKRLDVRRNGVLHPAISAASRILNPRTGDPTYTHTFDTLVL 236

Query: 224 EEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVE-KWDRLVAIIKHHQAKNS 282
           ++Q+   T+ER   +L L+ + ++ + +  +W    P +D   KWD ++  ++    K  
Sbjct: 237 QDQDCFKTEERSNTLLELLGHAEVASTLRAKWA-ARPNRDSSYKWDDVLQEVR----KRK 291

Query: 283 D---RKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           D   R L  ++E+I+L+  YPRLD  VS+  NHLLK+PFCVHP TG++C
Sbjct: 292 DPVLRALCNSLEDIILQYMYPRLDTEVSRRRNHLLKAPFCVHPSTGRVC 340


>gi|145353341|ref|XP_001420974.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145357426|ref|XP_001422920.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581210|gb|ABO99267.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583164|gb|ABP01279.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 398

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 135/330 (40%), Positives = 196/330 (59%), Gaps = 22/330 (6%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDNF--------RKREFSFTLN-------GDIYARYISYNS 61
           YYK+ +P     +WL +GN +           +REF F L+       G+I+ARY S+  
Sbjct: 4   YYKQFYPADLLFKWLAHGNDERHARAEKTYPSRREFCFVLDKEQEEGGGEIFARYQSFVD 63

Query: 62  PNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSV-FTPKMKELVFDIDMTDYDDVRNCCS 120
             + K ++ ++ P +I+ G I +  P D  +H+V   P+ +ELVFDIDMTDYDDVR CC 
Sbjct: 64  AKDFKTNVERKKPARIEFGPICNRRPSD--RHTVELKPEERELVFDIDMTDYDDVRTCCK 121

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            A IC KCW  M++A K+LD  LREDF F+ LLWV+SGRRGIHCW+ DE A  L    RS
Sbjct: 122 EAGICGKCWPLMTVALKVLDVGLREDFGFKHLLWVYSGRRGIHCWISDERARKLSDEARS 181

Query: 181 CLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQF--EKLLEEQELLSTKERQTKV 238
            +AEY +V+      +  L+   +HP +KRA   +  Q+  E  L  Q +L  K +  ++
Sbjct: 182 AVAEYFAVVKGEGQGRRVLSSTPMHPSVKRAYDGVLKQYWIESYLPTQRILEDKTKLEQL 241

Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELA 298
           L L+ + +IR ++  E+        V++W  +   ++    KN + KL  A+E+I+L   
Sbjct: 242 LNLIPDENIREDLASEFA-TSSLNSVDRWGVIERRVQDSLKKN-NYKLTGALEKIILWHI 299

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           YPR+DI VS+ +NHLLK PFCVHPKTG++C
Sbjct: 300 YPRVDIEVSRHMNHLLKGPFCVHPKTGRVC 329


>gi|60102672|gb|AAX14023.1| DNA primase [Monascus pilosus]
          Length = 535

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 125/326 (38%), Positives = 198/326 (60%), Gaps = 9/326 (2%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           T+ +  +Y+R+FP+    +WL +G +   +F  REF+ TL  D Y RY SY + +  +KD
Sbjct: 94  TDTMLAFYQRLFPFRHLFQWLNHGIVPSVDFGNREFALTLQNDAYLRYQSYATADLFRKD 153

Query: 69  LIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           +++  P + ++G +Y   P+D   L+     P  KELVFDID+TDYDD+R+CC  A+IC 
Sbjct: 154 ILRINPSRFEIGPVYSANPRDRKTLRGGQMKPVSKELVFDIDLTDYDDIRSCCEKANICA 213

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW ++++A K++DTALR+DF F+ +LWV+SGRRG H WVCD  A  L    R  +A Y+
Sbjct: 214 KCWSFVTMAIKVIDTALRDDFGFEHILWVYSGRRGAHAWVCDARARNLPDDRRRAIAGYL 273

Query: 187 SVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVS 243
            ++  N +  K+V +    LHPH+ R+  I++  F +  L++Q+     ++  ++L L+ 
Sbjct: 274 DIVRGNTMSGKRVNMK-RPLHPHVSRSLEILKTYFRQTTLDDQDTFLDPKQVERLLSLLP 332

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN-SDRKLKYAIEEILLELAYPRL 302
           N  +   + K+W         +KW  + A+ +  ++   S   L  A ++I+LE  YPRL
Sbjct: 333 NKPLTDALRKKWDSAPGRSSAKKWSDIDALARAGESNTLSSAALGEAKQDIVLEYTYPRL 392

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           D  VSK + HLLKSPF +HP TG++C
Sbjct: 393 DSEVSKKMIHLLKSPFVIHPGTGRVC 418


>gi|115384780|ref|XP_001208937.1| DNA primase small subunit [Aspergillus terreus NIH2624]
 gi|114196629|gb|EAU38329.1| DNA primase small subunit [Aspergillus terreus NIH2624]
          Length = 517

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 128/330 (38%), Positives = 198/330 (60%), Gaps = 9/330 (2%)

Query: 7   PESLTEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNE 64
           P+  T+ +  +Y+R+FP+    +WL +G +   +F  REF+ TL  + Y RY SY + + 
Sbjct: 83  PKVDTDTMLAFYQRLFPFRYLFQWLNHGIVPSPDFGNREFALTLQNEAYLRYQSYATADL 142

Query: 65  LKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGA 122
            +KD+++  P + ++G +Y+  P+D   L+     P  KELVFDID+TDYDD+R CC  A
Sbjct: 143 FRKDILRMNPARFEIGPVYNTNPRDRKTLRGGQLKPVSKELVFDIDLTDYDDIRTCCEKA 202

Query: 123 DICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCL 182
           +ICEKCW ++++A K++D ALREDF FQ +LWV+SGRRG H WVCD  A +L    R  +
Sbjct: 203 NICEKCWVFITMAIKVVDKALREDFGFQHILWVYSGRRGAHAWVCDPRARSLPDDRRRAI 262

Query: 183 AEYMSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVL 239
           A Y+ ++       K+V L    LHPH+ R+  I++  F +  L + +  +  E+  ++L
Sbjct: 263 AGYLDLIRGGTQSGKRVNLKR-PLHPHMARSLDILKPYFAQTTLGDLDTFAGPEQTQRLL 321

Query: 240 GLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN-SDRKLKYAIEEILLELA 298
            L+ +  +   + K+W          KW  + A+ K  ++   +   L  A ++I+LE  
Sbjct: 322 SLLPDKTLNEALRKKWESSPERPSTSKWADIDALAKSGKSTTLNTSTLLDAKQDIVLEYT 381

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           YPRLD  VSK +NHLLKSPF VHP TG++C
Sbjct: 382 YPRLDSEVSKKLNHLLKSPFVVHPSTGRVC 411


>gi|223994433|ref|XP_002286900.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220978215|gb|EED96541.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 504

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 147/361 (40%), Positives = 201/361 (55%), Gaps = 44/361 (12%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFY-------------------GNLDNFRKREFSFTL---- 48
           E+L  YY R+FPY     WL Y                    +   F +REFS T+    
Sbjct: 55  ELLGMYYARLFPYQLLHSWLSYDQSTVIPANGSSINSAGTPSSSTTFPRREFSMTIEPAP 114

Query: 49  NGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFD 106
             ++Y RY S+ S  EL   ++KR P KID+GA+++  PKD+  L       + +ELVFD
Sbjct: 115 GNEVYIRYQSFLSQAELTNAIMKRRPTKIDIGAVFNYPPKDNKSLPTGKLQTQERELVFD 174

Query: 107 IDMTDYDDVRNC-CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCW 165
           ID+TDYD VRNC CSGA IC KCW +M +A +++D  L+ DF F+ L W +SGRRG+HCW
Sbjct: 175 IDLTDYDGVRNCGCSGAKICPKCWTFMEMAVQVMDEGLKSDFGFEHLAWFYSGRRGVHCW 234

Query: 166 VCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLE 224
           VCDE A  L    RS +A Y  V   +   K F     LHP L RA  I+E  F   +L 
Sbjct: 235 VCDEGARKLSNEARSSVATYFEVNLGSEKNKNFHLSSPLHPMLSRAYSILEPHFITSVLP 294

Query: 225 E--QELLSTKERQTKVLGLV--SNGDIRAEIEKEWTRIGPGQDV-EKWDRLVA-----II 274
           E   +LL+T+   TK+L  +  +   + +++E++W          EKW+ L A     I 
Sbjct: 295 EDGHKLLATRADWTKLLLTLPKAANPVASKLEEKWASAKDDTTPEEKWEELKAALMAFIG 354

Query: 275 KHHQAK------NSDR-KLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           K   AK      N+DR ++++   E + +  YPRLDI+VSK  NHLLKSPFCVHPKTG++
Sbjct: 355 KGGNAKVPKNLSNTDRIRIEHWPIETVFKYTYPRLDINVSKMQNHLLKSPFCVHPKTGRV 414

Query: 328 C 328
           C
Sbjct: 415 C 415


>gi|448088304|ref|XP_004196514.1| Piso0_003736 [Millerozyma farinosa CBS 7064]
 gi|448092446|ref|XP_004197545.1| Piso0_003736 [Millerozyma farinosa CBS 7064]
 gi|359377936|emb|CCE84195.1| Piso0_003736 [Millerozyma farinosa CBS 7064]
 gi|359378967|emb|CCE83164.1| Piso0_003736 [Millerozyma farinosa CBS 7064]
          Length = 480

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 129/340 (37%), Positives = 202/340 (59%), Gaps = 21/340 (6%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELK 66
           S ++ML FYY+R+ P+    +WL +      +F  REF+F      Y RY S+NS  + K
Sbjct: 39  SSSDML-FYYERVLPFKQIFQWLNHSPKVGKDFTMREFAFEFRSGAYQRYNSFNSHEDFK 97

Query: 67  KDLIKRCPQKIDLGAIYDICPKD--HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADI 124
           K ++   P + ++GA+Y + PK+  +L  S   P  KELVFDID+TDYDD+R CC   DI
Sbjct: 98  KSVVNANPTRFEVGAVYSVNPKERKNLPKSALRPLSKELVFDIDLTDYDDIRRCCQKTDI 157

Query: 125 CEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAE 184
           C KCW+++ +A K+L+ AL +DF F+  +WVFSGRRG HCWV D++A  LD   R  + +
Sbjct: 158 CTKCWKFIQVATKVLNAALADDFGFEHFIWVFSGRRGAHCWVSDKSARGLDETTRKSIID 217

Query: 185 YMSVLTANPVKKVFLTGDV---LHPHLKRAKLIIEDQF-EKLLEEQEL-LSTKERQ---- 235
           Y+ +L A   K+   + ++    HPH++R+  I++  F + +LE+Q L L+T E      
Sbjct: 218 YLDLLNAKKNKRGSTSLNLKRPFHPHVERSFDILKQHFVDIILEDQNLWLTTPETSPDSK 277

Query: 236 -----TKVLGLVSNGDIRAEIEKEW-TRIGPGQDVEKWDRLVAIIKHH-QAKNSDRKLKY 288
                 ++L  +    +R E+ ++W T++      +KW+ + ++ K   + +N    L  
Sbjct: 278 EWESVEELLSFLPEVSLREELSQKWKTQVSISTSKQKWEDINSVAKKTLKHQNQVNLLNE 337

Query: 289 AIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           A ++I++   YPRLD  V+K + HLLKSPFC+HP TG IC
Sbjct: 338 AKKDIIIYFLYPRLDAEVTKQLIHLLKSPFCIHPSTGNIC 377


>gi|426197348|gb|EKV47275.1| hypothetical protein AGABI2DRAFT_192501 [Agaricus bisporus var.
           bisporus H97]
          Length = 417

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 126/329 (38%), Positives = 198/329 (60%), Gaps = 12/329 (3%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELK 66
           SL E++  YY+R++P+ P   WL + +     F  RE++FTL GD+Y RY S+ +  +LK
Sbjct: 10  SLPEVMLTYYRRLYPFRPIFTWLNHDHTPTRLFTHREWAFTLAGDVYLRYNSFATAEDLK 69

Query: 67  KDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADI 124
           K +    P + ++G +Y   P+D   ++ S F P  +ELVFD+DMTDYD +R CCS ADI
Sbjct: 70  KQVCDLNPTRFEIGPVYSARPRDRKTVRPSAFQPVQRELVFDLDMTDYDPIRTCCSDADI 129

Query: 125 CEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAE 184
           C++CW +++ A ++LD A+R+ F ++ LLWV+SGRRGIH W+ D+ AL L  + R  +  
Sbjct: 130 CKRCWAFITAAVRVLDPAIRDQFGYEHLLWVYSGRRGIHLWISDKEALDLTDQERKAIVG 189

Query: 185 YMSVLT----ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVL 239
           +M+V+     +N    V  +   L   L+     ++  F  L L +Q+L ++ E    +L
Sbjct: 190 WMTVVNSGKDSNKRLSVRTSSKSLPAPLQNVLENLKHTFTTLILRDQDLFASNEAAAALL 249

Query: 240 GLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAY 299
             + + +I  +++  W          KW  L+  ++   +K+SD  L+ A+E+I+L   Y
Sbjct: 250 EHIPDQEIVEKVKTNWINSACSTSEAKWVELLKTVR--SSKSSD-TLQAAMEDIILYYTY 306

Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           PRLD  VSK  NHLLK+PFCVHPKTG++C
Sbjct: 307 PRLDAEVSKHRNHLLKAPFCVHPKTGRVC 335


>gi|340966635|gb|EGS22142.1| DNA primase-like protein [Chaetomium thermophilum var. thermophilum
           DSM 1495]
          Length = 537

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 131/327 (40%), Positives = 195/327 (59%), Gaps = 10/327 (3%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           TE+L  +Y+R FP+    +WL +     ++F+ REFS  L  +   RY SY S +E + +
Sbjct: 112 TELLRTFYQRFFPWRYMFQWLNHSPTPTNDFKHREFSLWLPNEAVLRYQSYTSADEFRAE 171

Query: 69  LIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
           +++  P +I++G +Y   PKD       +VF P  KEL FDID+TDYDD+R CC  A IC
Sbjct: 172 VLRVMPARIEIGPVYTANPKDRKLFRNSTVFRPLAKELCFDIDLTDYDDIRTCCDKAKIC 231

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
            KCW+++++A K+LDTALR+DF F+ +LWV+SGRRG H WVCD+ A  L+   R  +  Y
Sbjct: 232 IKCWQFITMAIKVLDTALRDDFGFKHILWVYSGRRGAHAWVCDKQARILNDEQRKAITGY 291

Query: 186 MSVLTA--NPVKKVFLTGDVLHPHLKRAKLIIEDQFE-KLLEEQELLSTKERQTKVLGLV 242
             VLT      K+V L    LHPHL R+  I++D F+  +LE+Q+  S  ++ + +L  +
Sbjct: 292 FEVLTGGQQSGKRVNLRR-PLHPHLSRSLDILKDHFQHDVLEKQDPWSDSDKASVLLNQI 350

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKW-DRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPR 301
            +  +R  + ++W          KW D          +    + L  A ++I+LE  YPR
Sbjct: 351 PDPSLREALRRKWDSSPGRPSALKWADIDALAQSSASSSLDAKDLLDAKQDIVLEHTYPR 410

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           LD+ V++ +NHLLKSPF VHP TG+IC
Sbjct: 411 LDVGVTQKLNHLLKSPFVVHPGTGRIC 437


>gi|320583556|gb|EFW97769.1| DNA primase small subunit [Ogataea parapolymorpha DL-1]
          Length = 429

 Score =  247 bits (631), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 127/329 (38%), Positives = 191/329 (58%), Gaps = 10/329 (3%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSP 62
           Y P S    + +YY+   P+     WL +      +F  REF+F      Y RY S++S 
Sbjct: 37  YKPSSAD--MAYYYEHFLPFKSIYLWLNHSQAAQADFTMREFAFEYKSGAYQRYNSFHSA 94

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
            E K+ ++K  P + ++GA+Y + P+    +  ++  P  KELV DID+TDYDDVR CCS
Sbjct: 95  TEFKQSVVKAQPTRFEVGAVYPVEPRMRKSVSKALMKPIAKELVLDIDLTDYDDVRTCCS 154

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           G +IC KCWR++++A KI+  AL+EDF F+ L+WVFSGRRG+HCWV D  A  LD   R 
Sbjct: 155 GTEICPKCWRFITLAVKIVHRALQEDFGFEHLVWVFSGRRGVHCWVSDYRARILDETRRR 214

Query: 181 CLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVL 239
            + EY+ VL+    KK        HPH++RA  ++ D+F E +L++Q+  S  +R   + 
Sbjct: 215 AIVEYLDVLSVKS-KKTLNLKKPYHPHVERAFEVLRDEFVEVILKQQDPWSLPDRAEALA 273

Query: 240 GLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAY 299
             V +  + + + + W  +      EKW  + A  +  + ++ D  L+   +E +    Y
Sbjct: 274 RTVPDYKLSSALIRHWKEVPGRTSAEKWLDVDAFYQQLKVRSFD--LQDWKKETIFATMY 331

Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           PRLD+ VS+ +NHLLKSPFCVHP TG +C
Sbjct: 332 PRLDVEVSRQMNHLLKSPFCVHPGTGNVC 360


>gi|378732008|gb|EHY58467.1| DNA primase small subunit [Exophiala dermatitidis NIH/UT8656]
          Length = 531

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 125/320 (39%), Positives = 192/320 (60%), Gaps = 9/320 (2%)

Query: 17  YYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCP 74
           +Y R+FP+    +WL +      +F  REF+ TL+ D Y RY SY + + L+KD++   P
Sbjct: 110 FYSRLFPFRSLFQWLNHSPKPGPDFYNREFALTLSNDAYLRYQSYATADVLRKDILHHNP 169

Query: 75  QKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRY 131
            + ++G +Y   P+D     + ++F P  KE+VFDID+TDYDD+R CC  A+IC KCW +
Sbjct: 170 SRFEIGPVYTTAPRDRKTLRKSTMFRPLSKEIVFDIDLTDYDDIRTCCEKANICNKCWAF 229

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTA 191
            ++A K++D ALREDF F+ ++W++SGRRG+H WV D+ A  LD   R  +  Y  VL  
Sbjct: 230 ATMAIKVVDVALREDFGFEHIIWIYSGRRGVHAWVSDKEARELDDDKRKAITGYFEVLKG 289

Query: 192 --NPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRA 249
                K+V L    LHPH+ R+  I++  F ++L +QE   +K  Q ++L L+ +  +  
Sbjct: 290 GVQGGKRVNLRRP-LHPHIVRSLEILKPYFAQVLVDQEPFMSKAGQDRLLQLLPDKALNE 348

Query: 250 EIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLELAYPRLDIHVSK 308
            + K+W         +KW  + ++ +   +K+ D R L  A ++I+LE  YPRLD+ V K
Sbjct: 349 ALAKKWASSPDRPSHKKWADIDSVAETGVSKSLDKRALLQAKQDIVLEYTYPRLDVEVGK 408

Query: 309 GVNHLLKSPFCVHPKTGKIC 328
              HLLKSPF VHP TG++C
Sbjct: 409 KRIHLLKSPFVVHPGTGRVC 428


>gi|392578448|gb|EIW71576.1| hypothetical protein TREMEDRAFT_28201 [Tremella mesenterica DSM
           1558]
          Length = 406

 Score =  247 bits (630), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 130/330 (39%), Positives = 196/330 (59%), Gaps = 21/330 (6%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDN-----FRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           +Y+R+FPY P+  WL   N D+     F  REF+FTL GD+Y RY S++S ++ KK+L++
Sbjct: 4   FYRRLFPYRPFFLWL---NQDHAPAKLFTHREFAFTLQGDVYIRYNSFHSADDFKKELLR 60

Query: 72  RCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++G  Y   P+D   L      P+ +ELVFDIDMTDYD++R CC+   IC++CW
Sbjct: 61  LNPSRFEIGPQYSARPRDRKTLAAGALQPQRRELVFDIDMTDYDEIRTCCTDKKICKRCW 120

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
            Y++ A K+LD  LRE F F+ LLWV+SGRRGIHCW+ D  AL L+   R  +  ++ V+
Sbjct: 121 GYIAAAVKVLDQTLRETFGFKHLLWVYSGRRGIHCWISDSQALDLNDDQRKAIVTFLEVI 180

Query: 190 TAN--PVKKVFLTGD----VLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLV 242
             +   +KKV + G      LHP L+     ++  F ++ LEEQ+   ++     +L L+
Sbjct: 181 KGSKEQMKKVNVRGSNGEAPLHPFLEDTLQTLKFDFARVCLEEQDCFRSERGWETLLSLL 240

Query: 243 -SNGDIRAEIEKEWTRIGPGQDVEKWDRL---VAIIKHHQAKNSDRKLKYAIEEILLELA 298
             + DI   +   W         +KW  L   VA ++      + R+ + A+++I+L+  
Sbjct: 241 PQDRDITGTLRNVWQSDPGRSSSDKWHDLQSRVAPLEDSDQHKTFRRYQRAMQDIILQYT 300

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           YPR+D  VSK  NHLLKSPFC+HP TG++C
Sbjct: 301 YPRIDSEVSKHRNHLLKSPFCIHPGTGRVC 330


>gi|409080447|gb|EKM80807.1| hypothetical protein AGABI1DRAFT_112534 [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 417

 Score =  247 bits (630), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 126/329 (38%), Positives = 198/329 (60%), Gaps = 12/329 (3%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELK 66
           SL E++  YY+R++P+ P   WL + +     F  RE++FTL GD+Y RY S+ +  +LK
Sbjct: 10  SLPEVMLTYYRRLYPFRPIFTWLNHDHTPTRLFTHREWAFTLAGDVYLRYNSFATAEDLK 69

Query: 67  KDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADI 124
           K +    P + ++G +Y   P+D   ++ S F P  +ELVFD+DMTDYD +R CCS ADI
Sbjct: 70  KQVCDLNPTRFEIGPVYSARPRDRKTVRPSAFQPVQRELVFDLDMTDYDPIRTCCSDADI 129

Query: 125 CEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAE 184
           C++CW +++ A ++LD A+R+ F ++ LLWV+SGRRGIH W+ D+ AL L  + R  +  
Sbjct: 130 CKRCWAFITAAVRVLDPAIRDQFGYEHLLWVYSGRRGIHLWISDKEALDLTDQERKAIVG 189

Query: 185 YMSVLT----ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVL 239
           +M+V+     +N    V  +   L   L+     ++  F  L L +Q+L ++ E    +L
Sbjct: 190 WMTVVNSGKDSNKRLSVRTSSKSLPAPLQNVLENLKHTFTTLILRDQDLFASNEAAAALL 249

Query: 240 GLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAY 299
             + + +I  +++  W          KW  L+  ++   +K+SD  L+ A+E+I+L   Y
Sbjct: 250 EHIPDQEIVEKVKTNWINSACSTSEAKWVELLKTVR--SSKSSD-ILQAAMEDIILYYTY 306

Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           PRLD  VSK  NHLLK+PFCVHPKTG++C
Sbjct: 307 PRLDAEVSKHRNHLLKAPFCVHPKTGRVC 335


>gi|302757880|ref|XP_002962363.1| hypothetical protein SELMODRAFT_78436 [Selaginella moellendorffii]
 gi|300169224|gb|EFJ35826.1| hypothetical protein SELMODRAFT_78436 [Selaginella moellendorffii]
          Length = 363

 Score =  246 bits (629), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 137/306 (44%), Positives = 185/306 (60%), Gaps = 17/306 (5%)

Query: 39  FRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHS---- 94
           F +REFSFTL  DIY RY+S+   +E +  + ++ PQKID+GA+Y + P   L ++    
Sbjct: 16  FGRREFSFTLENDIYLRYMSFRDASEFEATVCEKRPQKIDIGAVYSVDPAKRLAYANVSN 75

Query: 95  --VFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLL 152
             VF P  KELVFD+DMTDYDD+RNCCSGADIC KCW  M+IA K++D+ LREDF F  +
Sbjct: 76  DRVFAPVEKELVFDVDMTDYDDIRNCCSGADICLKCWPLMTIAIKVVDSTLREDFGFDHI 135

Query: 153 LWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANP--VKKVFLTGDVLHPHLKR 210
           LWV+SGRRG+HCWVCD  A  L    R+ +A+Y  V   N    +KV L    LHP L R
Sbjct: 136 LWVYSGRRGVHCWVCDARARKLTNEQRASIADYFRVYKGNENNNRKVSLPTH-LHPFLAR 194

Query: 211 AKLIIEDQF--EKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWD 268
                  ++  E++L +Q LL  +E   KVL L+S   +  +         P Q  EK  
Sbjct: 195 TYSQFLSRYFDEEILIKQSLLHPQENADKVLKLLSGEGMSMQYMSSVYSELPVQLEEKKR 254

Query: 269 RLVAI---IKHHQAKNSDRKL--KYAIE-EILLELAYPRLDIHVSKGVNHLLKSPFCVHP 322
               +   I   +  +  RKL  K  I+ E++    YPRLD+ V+K +NHLLK+PFC+HP
Sbjct: 255 NNTLLPDKINRQRWADLQRKLMQKRGIQRELVFTYTYPRLDLEVTKKMNHLLKAPFCIHP 314

Query: 323 KTGKIC 328
           KTG++C
Sbjct: 315 KTGRVC 320


>gi|171679615|ref|XP_001904754.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939433|emb|CAP64661.1| unnamed protein product [Podospora anserina S mat+]
          Length = 547

 Score =  246 bits (629), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 131/325 (40%), Positives = 198/325 (60%), Gaps = 10/325 (3%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           ++L  +Y+ +FP+  Y +WL +      +F+ REFS  L+G +  R+ SY + + L+KD+
Sbjct: 137 DLLRAFYQLLFPWRHYFQWLNHSPTPTPDFKHREFSLWLSGGVVFRFQSYATLDLLRKDV 196

Query: 70  IKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
            K  P++I++G IY   P+D       S F P  KEL FDID+TDYDDVR CC  A+IC 
Sbjct: 197 FKHLPERIEIGPIYTANPRDRKTFRNSSAFKPVAKELCFDIDLTDYDDVRTCCDKANICG 256

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCWR++++A K+L  AL+EDF ++ ++WV+SGRRG H WVCD  A  LD   R  +  Y 
Sbjct: 257 KCWRFITMAIKVLGVALKEDFGYEHVMWVYSGRRGAHAWVCDRKARGLDDHKRKAIGNYF 316

Query: 187 SVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVSN 244
           SV+       K       LHPHL R+  I+++ F   +LE Q+    ++R  K+L L+ +
Sbjct: 317 SVVKGGEKTGKRVNVRRPLHPHLARSLGILKEHFLTDVLEGQDPWREEDRAEKLLMLLPD 376

Query: 245 GDIRAEIEKEWTRIGPGQ-DVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLD 303
             +R  ++++W    PG+  V KW  + ++ K   + N+ + L  A ++I+LE  YPRLD
Sbjct: 377 VKLRVALKEKW-EANPGRSSVVKWGDIDSVAKTMGSVNT-KDLLEAKQDIVLEYTYPRLD 434

Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
           I V++   HLLKSPF VHP TG++C
Sbjct: 435 ILVTEQKTHLLKSPFVVHPGTGRVC 459


>gi|430811943|emb|CCJ30592.1| unnamed protein product [Pneumocystis jirovecii]
          Length = 427

 Score =  246 bits (628), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 131/325 (40%), Positives = 196/325 (60%), Gaps = 21/325 (6%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDN-------FRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           +Y+RIFP+    +W+FY  L+        F  RE +FTL  D Y RY S+ +    +K++
Sbjct: 18  FYQRIFPF----KWIFYEWLNRSSVPSKAFCNREIAFTLQNDAYLRYNSFPTYEAFRKEV 73

Query: 70  IKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEK 127
           ++  P + ++G +Y+  P+D   L+ ++F P  KELVFDID+TDYDDVR CC   DIC K
Sbjct: 74  LRLNPSRFEIGPVYNANPRDRKTLRKAMFKPLEKELVFDIDLTDYDDVRTCCFKTDICSK 133

Query: 128 CWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMS 187
           CW +++ A K++D  LREDF FQ +LWV+SGRRG+H WVCD+ A  L  + R  ++ Y+ 
Sbjct: 134 CWCFITAAIKVIDLTLREDFGFQHILWVYSGRRGVHAWVCDKRARELSDQKRKAVSVYLE 193

Query: 188 VLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLVSN 244
           ++  +    KKV L    LHP + R+  I+++ F   +L  Q    + E   K+L  +++
Sbjct: 194 LVRGSTTSGKKVDLKRP-LHPSISRSLRILKETFRSDILISQNPWESDEGSEKLLEFITD 252

Query: 245 GDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEILLELAYPRLD 303
            +    + K+W          KW  + ++ +   +KN D K L  A ++I+LE  YPRLD
Sbjct: 253 NE---SLRKKWKSFPKRSSYNKWQDIDSVAEEGVSKNLDTKALLAAKQDIILEYMYPRLD 309

Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
           + VSK +NHLLKSPFCVHP TG+IC
Sbjct: 310 VEVSKHLNHLLKSPFCVHPGTGRIC 334


>gi|146184063|ref|XP_001027694.2| DNA primase, eukaryotic-type, small subunit, putative family
           protein [Tetrahymena thermophila]
 gi|146143385|gb|EAS07452.2| DNA primase, eukaryotic-type, small subunit, putative family
           protein [Tetrahymena thermophila SB210]
          Length = 399

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 127/341 (37%), Positives = 196/341 (57%), Gaps = 35/341 (10%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFY---GNLDNFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           ++L  YY+  FP    ++WL Y   G+   F +REFSFTL  ++Y RY  YNS  E K  
Sbjct: 21  DLLEEYYRSYFPVSQMVQWLSYPQDGDDTYFTRREFSFTLQNEVYLRYQMYNSEREFKNA 80

Query: 69  LIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKC 128
           L+++ P+KID+GA+YD   K   +      K KE V DIDMTDYD +R CCS A ICEKC
Sbjct: 81  LLQKVPEKIDIGAVYDRPGK---KGDDIKAKEKEFVIDIDMTDYDHIRTCCSKAKICEKC 137

Query: 129 WRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSV 188
           W++M +AC ++  +L EDF FQ +LWV+SGRRGIH WVCD+     +   R+ + +Y+++
Sbjct: 138 WKFMRVACDLISKSLDEDFGFQHVLWVYSGRRGIHAWVCDKEIRKANDYTRASIIDYLNI 197

Query: 189 LTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLV------ 242
           L  N +   ++   +L   ++++ LI  +  ++L ++ + L  ++   KV   +      
Sbjct: 198 LVDNSIGSSYVKPSLL--KMEKSHLIERNAMKQLNQKNDDLKAEKESEKVFVEIVLREQN 255

Query: 243 ---------------SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLK 287
                           + ++  E+EKEW  +   +  ++++ L  ++     K    K  
Sbjct: 256 LFMKKPEIILEFLAKRSENLSKEVEKEWKTLKTSE--QRYEALKELVSSEDKK----KTH 309

Query: 288 YAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           Y +EE+ + L YPRLD++VSK  NHLLKSPFC+HPKTG +C
Sbjct: 310 YLLEELRIWLLYPRLDVNVSKSTNHLLKSPFCIHPKTGNVC 350


>gi|302686290|ref|XP_003032825.1| hypothetical protein SCHCODRAFT_53958 [Schizophyllum commune H4-8]
 gi|300106519|gb|EFI97922.1| hypothetical protein SCHCODRAFT_53958 [Schizophyllum commune H4-8]
          Length = 440

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 129/338 (38%), Positives = 207/338 (61%), Gaps = 18/338 (5%)

Query: 6   DPESLT-EMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           D E L+ E++  +YKR++P+     WL   ++    F +REF+FTL+ D Y RY S+N+ 
Sbjct: 5   DVEELSQEIMRTFYKRLYPFKAIFNWLNQDHVPTPLFTQREFAFTLSNDAYLRYQSFNNA 64

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           +++KK ++   P + ++G +Y   P+D   L+   FTP+ +ELVFDIDMTDYD VR CCS
Sbjct: 65  DDMKKQVLAMNPTRFEIGPMYSAKPRDRKLLRPGNFTPQKRELVFDIDMTDYDPVRTCCS 124

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           GADIC +CW +++ A K++D A+R+ + ++ LLWV+SGRRGIH W+ D+ A+ L    R 
Sbjct: 125 GADICRRCWGFITAAVKVIDAAIRDQYGYEHLLWVYSGRRGIHLWISDQEAMELTDDQRR 184

Query: 181 CLAEYMSVL---TANPVKKVFL-TGDVLHPHLKR-----AKLIIEDQFEKLLEEQELLST 231
            +  ++SV+   +    KK+ +  G+   P   R      K I  D    +LE+Q+  ++
Sbjct: 185 AIVNWLSVVPPSSKGEGKKINVRIGNRPVPACIRDAIDELKTIFSDL---ILEDQDCFAS 241

Query: 232 KERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAI 290
           +E    +L L+ +  I A + + W        V+KW+ +   +K ++  + +R  +  A+
Sbjct: 242 EEGYEILLKLIPDSSIVATLTERWQDDPHRSSVDKWEDIRKEMKKYERNSRERTIMTNAL 301

Query: 291 EEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           E+I+L+  YPRLD  VSK  NHLLK+PFC+HPKTG++C
Sbjct: 302 EDIVLQYTYPRLDTEVSKHRNHLLKAPFCIHPKTGRVC 339


>gi|319411694|emb|CBQ73738.1| related to DNA primase 48K protein PRI1 [Sporisorium reilianum
           SRZ2]
          Length = 472

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 137/354 (38%), Positives = 204/354 (57%), Gaps = 35/354 (9%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFY-----GNLDNFRKREFSFTLNGDIYARYI 57
           D  DP S   ML FY +R+FP+     WL +          F  REF+FTL  + Y RY 
Sbjct: 24  DSSDPMS---MLSFY-RRLFPWKQLFSWLNHDLPHMAATKCFTHREFAFTLQNEAYLRYN 79

Query: 58  SYNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDV 115
           S+++ +ELKK++ +  P + ++G +Y   PKD   +Q + F P  +ELVFDIDMTDYD+V
Sbjct: 80  SFSTADELKKEVCRLNPARFEIGPVYTAKPKDRKTVQKASFKPVQRELVFDIDMTDYDEV 139

Query: 116 RNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALD 175
           R CCSG  IC++CW ++++A ++LD ALR+DF F+ LLWV+SGRRGIHCW+ D+ A  L 
Sbjct: 140 RTCCSGKGICKRCWAFIAVAVQVLDEALRQDFGFKHLLWVYSGRRGIHCWISDKEAFQLA 199

Query: 176 GRGRSCLAEYMSVLT--ANPVKKV------FLTGDVLHPHLKRA-----------KLIIE 216
              R  +  ++ V+   AN VKKV         G  LHP L+RA           KL   
Sbjct: 200 DDARKAIVGWLEVIKGGANQVKKVDAGWMGSAGGRSLHPSLRRAIGGEGSESGPLKLAFV 259

Query: 217 DQFEKLLEEQELLSTKERQTKVLGLVSNGDIRA--EIEKEWTRIGPGQDVEKWDRLVAII 274
           D    +L++Q+   + ++   +L L+ + +  A  ++  +W R      +EKW  ++   
Sbjct: 260 D---TVLKDQDCFRSPDQWNVLLQLLPSSETEAIEKLRSKWERSSSRSSLEKWQDVMECA 316

Query: 275 KHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +      S+R  +  +E+++L+  YPR+D  VSK +NHLLKSPF VHP TG +C
Sbjct: 317 QRAGEYKSERIWRPCLEDVILQYTYPRIDAEVSKHLNHLLKSPFVVHPATGWVC 370


>gi|412987581|emb|CCO20416.1| DNA primase small subunit [Bathycoccus prasinos]
          Length = 493

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 190/349 (54%), Gaps = 37/349 (10%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDN-----------FRKREFSFTLNGDIYARYISYNSPNEL 65
           YY  IFP      WL Y    +            + REF FTL G+I+ RY SY     L
Sbjct: 52  YYAHIFPSKQLFEWLSYEGATSSKESRKDQQQFIQNREFCFTLKGEIFVRYNSYQDEKSL 111

Query: 66  KKDLIKRCPQKIDLGAIYDICPKDHLQHS-VFTPKMKELVFDIDMTDYDDVRNCCSGADI 124
           +KDL  + P KID+G ++   PK+ L +   F P  +ELVFDIDMTDYDDVR CC  A I
Sbjct: 112 RKDLKTKVPGKIDIGPVFSHNPKNRLAYGGSFKPVERELVFDIDMTDYDDVRTCCDQAKI 171

Query: 125 CEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAE 184
           C KCW  M+ A K+LD  LREDF F+ +LWV+SGRRGIH WVCDE A  L    RS +AE
Sbjct: 172 CPKCWPLMNCAVKVLDVGLREDFGFEHILWVYSGRRGIHAWVCDERARKLSDEERSAVAE 231

Query: 185 YMSVLT----ANPVKKVFLT---------GDVLHPHLKRAKLIIEDQF--EKLLEEQELL 229
           Y SV          KK  L+         G  +HP L+ A   +   F  ++ L  Q+L+
Sbjct: 232 YFSVFKGVEGGGEKKKTNLSFGSGKRAWGGGKMHPRLEEAYWKVLKPFWEKEFLPAQKLM 291

Query: 230 STKERQTKVLGLVSNGDIRAEIEKEWT-----RIGPGQDVE----KWDRLVAIIKHH-QA 279
            +K+    +L ++ + ++R + E ++       +    DV+    +W R+V  ++   + 
Sbjct: 292 ESKKHFETILSMIPDANVRQKAEFDFNTNKMPTVSRDGDVDVNTWRWQRIVKAVEDELRG 351

Query: 280 KNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
              +  L   ++ I+    YPRLD  VSK +NHLLK+PFCVHPKTG++C
Sbjct: 352 PKVNWDLTSCLQRIIFSHVYPRLDAEVSKHMNHLLKAPFCVHPKTGRVC 400


>gi|256083984|ref|XP_002578214.1| hypothetical protein [Schistosoma mansoni]
 gi|353232175|emb|CCD79530.1| hypothetical protein Smp_160190 [Schistosoma mansoni]
          Length = 410

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 137/306 (44%), Positives = 184/306 (60%), Gaps = 25/306 (8%)

Query: 41  KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTP 98
           K+EFSFTLNGDIY RY S++S  +L+K+L+K CP KID+GA+Y   P+ H  +  S   P
Sbjct: 14  KQEFSFTLNGDIYLRYQSFDSSADLRKELVKLCPIKIDIGAVYSNAPRLHRSILSSSLKP 73

Query: 99  KMKELVFDIDMTDYDDVRNCC-----SGADICEKCWRYMSIACKILDTALREDFDFQLLL 153
           + KELVFDID+TDYD+VR CC     SG+ +C +CW     A   +D ALREDF FQ LL
Sbjct: 74  EWKELVFDIDLTDYDEVRYCCGEQSTSGSPVCLRCWPLARSAVLCIDRALREDFGFQHLL 133

Query: 154 WVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVL---HPHLKR 210
           WV+SGRRG+HCWVCD +A  LD   R+ +AEY++++     KKV L   +L      L++
Sbjct: 134 WVYSGRRGVHCWVCDRSARHLDQTSRTAIAEYLTLVRGGNSKKVILPFLILIAWTSTLEK 193

Query: 211 AKLIIEDQFEKLLEE--QELLSTKERQTKVLGL--VSNGDIRAEIEKEWTRIGPGQDVE- 265
             + I   F  +     Q L   K+R  K+L    V   D+R  +  EW+        E 
Sbjct: 194 MLMNITLVFSIVATANGQNLFGNKKRLDKLLSFLPVELKDLRERLSDEWSVDVQDNKEEV 253

Query: 266 ---KWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHP 322
              +W+ L   +K +   N        ++EI+L   YPRLD++VS G+NHLLKSPFCVHP
Sbjct: 254 STKRWNTLRKFLKENGRAN-------VLKEIVLNFTYPRLDVNVSTGLNHLLKSPFCVHP 306

Query: 323 KTGKIC 328
           KTG IC
Sbjct: 307 KTGHIC 312


>gi|30984125|dbj|BAC76768.1| DNA primase catalytic subunit [Coprinopsis cinerea]
          Length = 416

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 134/339 (39%), Positives = 198/339 (58%), Gaps = 12/339 (3%)

Query: 1   MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYIS 58
           MA++ D  +   ML FY +R++P+     WL + ++    F  REF+FTL GD+Y RY S
Sbjct: 1   MANEIDFLAPEAMLTFY-RRLYPFKSIYSWLNHDSMPTRMFTHREFAFTLQGDVYLRYRS 59

Query: 59  YNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVR 116
           +NS  +LKKD+    P + ++G +Y   P+D   L+   FTP ++ELVFDIDMTDYD VR
Sbjct: 60  FNSAEDLKKDICHLNPTRFEIGPVYTGRPRDKKTLRPGSFTPTLRELVFDIDMTDYDLVR 119

Query: 117 NCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDG 176
            CCS A IC++CW ++S A K+LD ++RE F ++ LLWV+SGRRGIH W+ D  A+ L  
Sbjct: 120 TCCSDAAICKRCWTFISAAVKVLDRSIREHFGYEKLLWVYSGRRGIHLWISDVEAMELSD 179

Query: 177 RGRSCLAEYMSVLTANPVK-----KVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLS 230
             R  +  +M+V+     +      V     VL P L+ A   +   F  L L +Q+ L+
Sbjct: 180 AQRKAIVGWMNVVNVGSRETSKKLNVRTASKVLPPPLQDALEELVPIFSDLILGDQDSLA 239

Query: 231 TKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDR-KLKYA 289
           ++     +L  V    +   + ++W+        EKW  L A  +     +  R +L +A
Sbjct: 240 SENGWETLLEFVPIPQVAERLRRKWSNDPDRSSDEKWADLKAEAREFDKNSPQRTQLMHA 299

Query: 290 IEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +E+I+L   YPR+D  VSK  NHLLK+PFCVHPKTG++C
Sbjct: 300 MEDIILHYTYPRIDAEVSKHRNHLLKAPFCVHPKTGRVC 338


>gi|388582854|gb|EIM23157.1| DNA primase catalytic subunit [Wallemia sebi CBS 633.66]
          Length = 416

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 137/327 (41%), Positives = 195/327 (59%), Gaps = 24/327 (7%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDN-----FRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           YY+R+FP+    +  FY N D+     F  REF+FT+  DIY RY+S+++ +E KK+ ++
Sbjct: 21  YYERLFPFKQMYQ--FY-NGDHIPTRLFTNREFAFTVKDDIYLRYLSFSTWDEWKKETLR 77

Query: 72  RCPQKIDLGAIYDICPKD--HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GA+Y   P+D   L  S F  K +ELVFDIDMTDYD++R C +G DICE+CW
Sbjct: 78  LNPTRFEIGAVYTARPRDKKSLGPSAFKTKERELVFDIDMTDYDEIRTCAAGKDICEQCW 137

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
            ++  A +ILDT LR+DF ++ LLWVFSGRRGIHCWV D AA AL    R  L  Y+ V+
Sbjct: 138 GFVVAAMRILDTVLRQDFGYKHLLWVFSGRRGIHCWVSDPAARALTDEQRKALVGYIEVV 197

Query: 190 --TANPVKKVFLT-----GDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGL 241
             +A   KKV ++     G   HP L R    + + FEK +LE+Q+          +L L
Sbjct: 198 RGSAQQAKKVHISQNLPRGAPWHPSLMRGYEQLYECFEKTVLEDQDAFRDDPAWRTLLSL 257

Query: 242 VSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPR 301
           + + D+   +  EW         EK+ +    I+    K+   +   A+ EI+L+  YPR
Sbjct: 258 LPDQDVAKSLSNEWVNKPGLNSREKFKQ----IRKRMPKSP--QWDTALREIVLQYVYPR 311

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +D  VSK  NHLLK+PFC+HP TGK+C
Sbjct: 312 IDTEVSKHQNHLLKAPFCIHPGTGKVC 338


>gi|403180712|ref|XP_003339027.2| hypothetical protein PGTG_20567 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|375169327|gb|EFP94611.2| hypothetical protein PGTG_20567 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 511

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 130/327 (39%), Positives = 194/327 (59%), Gaps = 16/327 (4%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCP 74
           +Y+RIFP+     WL   ++ N  F  REF+ TL  D Y RY SY +  +L+KD+I+  P
Sbjct: 97  FYRRIFPWKQLFLWLNQDHVPNYLFTHREFAITLQNDAYLRYNSYANYVDLQKDIIRLNP 156

Query: 75  QKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYM 132
            + ++G  Y   PKD   L  + F P ++ELVFDID+TDYDD+R CCS   IC KCW+++
Sbjct: 157 TRFEIGPAYSAPPKDRKTLPKASFKPILRELVFDIDLTDYDDIRRCCSDKKICIKCWKFI 216

Query: 133 SIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTAN 192
           S+A ++LD  LR+DF ++ LLWV+SGRRG HCWV DE A+ L    R  +  Y++++   
Sbjct: 217 SLAIQVLDFTLRQDFGYKHLLWVYSGRRGAHCWVSDEEAMRLTDEQRKAIVSYINIMKGG 276

Query: 193 PVK---KVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVSNGDIR 248
             K   KV L    LHP ++R+ + + + F   +L +QE+   +++   +L + S+ D+ 
Sbjct: 277 GSKFGLKVDLKS-PLHPMVERSLMELTNSFLPVVLRDQEVFKEEDKWKFLLRIWSDTDLT 335

Query: 249 AEIEKEWTRIGPGQDVEKWDRLVAIIK---HHQAKNSDRK----LKYAIEEILLELAYPR 301
            + E+ W         EKW  ++   K     +  N  +K    L+  I  ++L   YPR
Sbjct: 336 KKFEQAWLSDPEITSEEKWKAVLNYYKPSEKEKTPNHSQKKLTALRDVINNVILHYTYPR 395

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +D+ VSK +NHLLKSPFCVHP TGK+C
Sbjct: 396 IDLEVSKHLNHLLKSPFCVHPATGKVC 422


>gi|255944379|ref|XP_002562957.1| Pc20g04070 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587692|emb|CAP85736.1| Pc20g04070 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 504

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 123/320 (38%), Positives = 192/320 (60%), Gaps = 9/320 (2%)

Query: 17  YYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCP 74
           +Y+R+FP+    +WL +G     +F  REF+ TL  D Y RY SY + +  +KD++K  P
Sbjct: 78  FYQRLFPFRYLFQWLNHGIVPTKDFGNREFALTLQNDAYLRYQSYPTADLFRKDILKMNP 137

Query: 75  QKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYM 132
            + ++G +Y   P+D   L+     P  KELVFDID+TDYDD+R CC  A+IC KCW ++
Sbjct: 138 SRFEIGPVYSTNPRDRKTLRGGQMKPVSKELVFDIDLTDYDDIRTCCVKANICAKCWAFV 197

Query: 133 SIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL--T 190
           +++ K++DTALREDF F+ +LWV+SGRRG H WVCD  A  L    R  +A Y+ ++   
Sbjct: 198 TMSIKVIDTALREDFGFEHILWVYSGRRGAHAWVCDPRARNLPDERRRAIAGYLEIVRGG 257

Query: 191 ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLVSNGDIRA 249
           +   KKV +    LHPH+ R+  +++  F +  L +Q+   + E+  ++L L+ +  +  
Sbjct: 258 SQSGKKVNIKR-PLHPHIVRSLELLKHDFARTTLGDQDTFESAEQAERLLSLLPDKTLNE 316

Query: 250 EIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN-SDRKLKYAIEEILLELAYPRLDIHVSK 308
            + ++W          KW  + ++ K  ++   +   L+ A ++I+LE  YPRLD  VSK
Sbjct: 317 SLRRKWDSSPDRASTSKWADIDSLAKTGKSSTLNPATLRDAKQDIVLEYTYPRLDAEVSK 376

Query: 309 GVNHLLKSPFCVHPKTGKIC 328
            + HLLKSPF +HP TG+IC
Sbjct: 377 KMIHLLKSPFVIHPGTGRIC 396


>gi|170098002|ref|XP_001880220.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644658|gb|EDR08907.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 407

 Score =  243 bits (621), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 130/326 (39%), Positives = 194/326 (59%), Gaps = 11/326 (3%)

Query: 13  MLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELKKDLI 70
           ML FY +R++P+     WL + +  +  F +REF+FTL GD+Y RY S+NS ++LKK + 
Sbjct: 1   MLTFY-RRLYPFKAIFNWLNHEHAPSKLFNQREFAFTLAGDVYLRYQSFNSHDDLKKQVC 59

Query: 71  KRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKC 128
           +  P + ++G +Y   P+D    +   F P M+ELVFDIDMTDYD +R CCSGA IC++C
Sbjct: 60  QLNPTRFEIGPVYSSKPRDKKTARAGGFHPIMRELVFDIDMTDYDPIRTCCSGAGICKRC 119

Query: 129 WRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSV 188
           W ++S A  +LDTA+RE F ++ LLWV+SGRRGIH W+ D+ A+ L  + R  L  +++V
Sbjct: 120 WAFISAAVHVLDTAIREQFGYEQLLWVYSGRRGIHLWISDKEAMELTDQQRKALVGWLTV 179

Query: 189 LTAN--PVKKVFLTGDV--LHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLVS 243
           +       KK+ +   +  L P L+     +   F +L L +Q     KE    +L L+ 
Sbjct: 180 IQGGGKESKKLSIRSGMRSLPPSLQSILEHLAVVFSELILADQNCFGDKEGGETLLQLIP 239

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDR-KLKYAIEEILLELAYPRL 302
           +  +   + K W+        ++W    A I+     +  R  L  A+E+I+++  YPRL
Sbjct: 240 DAGVVVALRKLWSDDPSRHSEDRWQDFKAQIRSCDKGSQQRLNLTAAMEDIIIQYTYPRL 299

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           D  VSK  NHLLK+PFCVHPKTG+IC
Sbjct: 300 DAEVSKHRNHLLKAPFCVHPKTGRIC 325


>gi|302658042|ref|XP_003020731.1| hypothetical protein TRV_05182 [Trichophyton verrucosum HKI 0517]
 gi|291184589|gb|EFE40113.1| hypothetical protein TRV_05182 [Trichophyton verrucosum HKI 0517]
          Length = 539

 Score =  243 bits (621), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 129/343 (37%), Positives = 196/343 (57%), Gaps = 27/343 (7%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSPN------ 63
           E +  +Y+R+FP+    +WL +G     +F  REF+FTL  D Y RY S+ + +      
Sbjct: 94  EFMSAFYQRLFPFKYLFQWLNHGVKPSTDFGNREFAFTLPNDAYLRYQSFQTADAYVYTF 153

Query: 64  ------------ELKKDLIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDID 108
                        L KD+++  P + ++G +Y   P+D     +   F P  KELVFDID
Sbjct: 154 LPQSGFKLISFHSLHKDVMRLNPSRFEIGPVYSTNPRDRKTLRKPGAFKPISKELVFDID 213

Query: 109 MTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCD 168
           +TDYDD+R CCS A+IC KCW +++++ K++D ALREDF FQ +LWV+SGRRG H WVCD
Sbjct: 214 LTDYDDIRTCCSKANICLKCWAFVTMSIKVIDAALREDFGFQHILWVYSGRRGAHAWVCD 273

Query: 169 EAALALDGRGRSCLAEYMSVLT--ANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEE 225
           + A  L    R  +AEY+ V+   +   K+V L    LHPH+ R+   + + F   +L +
Sbjct: 274 KRARNLPDDRRRAIAEYLEVVRGGSQSGKRVNLRR-PLHPHITRSLDTLREYFASTVLVD 332

Query: 226 QELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK 285
           Q+  S  ++  +++ L+ +  +RA ++K+W          KW  +  + K +      + 
Sbjct: 333 QDPFSRPDQAARLIELLPDKTLRAALQKKWDSAPGRSSSSKWADIDTVAKANSRGLDTKA 392

Query: 286 LKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           L  A ++I+LE  YPRLD  VSK + HLLKSPF VHP TG++C
Sbjct: 393 LLEAKQDIVLEYTYPRLDAEVSKKLIHLLKSPFVVHPGTGRVC 435


>gi|154281283|ref|XP_001541454.1| DNA primase small subunit [Ajellomyces capsulatus NAm1]
 gi|150411633|gb|EDN07021.1| DNA primase small subunit [Ajellomyces capsulatus NAm1]
          Length = 567

 Score =  243 bits (621), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 197/335 (58%), Gaps = 18/335 (5%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           +E +  +Y R+FP+    +WL +      +F  REF+FTL  D Y RY S+ +   L+K+
Sbjct: 97  SETMYAFYLRLFPFKYLFQWLNHDVKPSPDFGNREFAFTLQNDAYLRYQSFPNAELLRKE 156

Query: 69  LIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
           ++   P + ++G +Y   P+D     + S+F P  KELVFDID+TDYDD+R CC+ A+IC
Sbjct: 157 ILHLNPSRFEIGPVYSTNPRDRKTLRKASLFKPVSKELVFDIDLTDYDDIRTCCNKANIC 216

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
           +KCW ++++A K++DTALR+DF F+ +LWV+SGRRG H WVCD  A +L    R  +A Y
Sbjct: 217 QKCWAFVTMAIKVIDTALRDDFGFEHILWVYSGRRGAHAWVCDPRARSLPDDRRKAIAGY 276

Query: 186 MSVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLV 242
           + V+   +   KKV L    LHPH+ R+  I++  F   +L  Q+  S   +  ++L L+
Sbjct: 277 LEVIRGGSQSGKKVNLK-RPLHPHVARSLEILKPHFASTILVAQDTFSNPAQAEQLLALL 335

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNS---------DRKLKYAIEEI 293
            +  +   + ++W          KW+ + A+ K  +++ +          + L  A ++I
Sbjct: 336 PDKPLADALRRKWDSAPERSSTSKWNDIDAVAKSAKSRGAAAAGQQSLDTKALLEAKQDI 395

Query: 294 LLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            LE  YPRLD  VSK + HLLKSPF VHP TG++C
Sbjct: 396 ALEYTYPRLDAEVSKKLIHLLKSPFVVHPGTGRVC 430


>gi|240274248|gb|EER37765.1| DNA primase [Ajellomyces capsulatus H143]
          Length = 567

 Score =  243 bits (620), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 197/335 (58%), Gaps = 18/335 (5%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           +E +  +Y R+FP+    +WL +      +F  REF+FTL  D Y RY S+ +   L+K+
Sbjct: 97  SETMYAFYLRLFPFKYLFQWLNHDVKPSPDFGNREFAFTLQNDAYLRYQSFPNAELLRKE 156

Query: 69  LIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
           ++   P + ++G +Y   P+D     + S+F P  KELVFDID+TDYDD+R CC+ A+IC
Sbjct: 157 ILHLKPSRFEIGPVYSTNPRDRKTLRKASLFKPVSKELVFDIDLTDYDDIRTCCNKANIC 216

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
           +KCW ++++A K++DTALR+DF F+ +LWV+SGRRG H WVCD  A +L    R  +A Y
Sbjct: 217 QKCWTFVTMAIKVIDTALRDDFGFEHILWVYSGRRGAHAWVCDPRARSLPDDRRKAIAGY 276

Query: 186 MSVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLV 242
           + V+   +   KKV L    LHPH+ R+  I++  F   +L  Q+  S   +  ++L L+
Sbjct: 277 LEVIRGGSQSGKKVNLK-RPLHPHVSRSLEILKPHFASTILVAQDTFSNPAQAEQLLALL 335

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNS---------DRKLKYAIEEI 293
            +  +   + ++W          KW+ + A+ K  +++ +          + L  A ++I
Sbjct: 336 PDKPLADALRRKWDSAPERSSTSKWNDIDAVAKSAKSRGAAAAGQQSLDTKALLEAKQDI 395

Query: 294 LLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            LE  YPRLD  VSK + HLLKSPF VHP TG++C
Sbjct: 396 ALEYTYPRLDAEVSKKLIHLLKSPFVVHPGTGRVC 430


>gi|321258941|ref|XP_003194191.1| DNA primase small subunit [Cryptococcus gattii WM276]
 gi|317460662|gb|ADV22404.1| DNA primase small subunit, putative [Cryptococcus gattii WM276]
          Length = 429

 Score =  243 bits (620), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 130/338 (38%), Positives = 198/338 (58%), Gaps = 14/338 (4%)

Query: 4   KYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNS 61
           +YD  S  +++  +Y+R+FPY P   WL    + +  F  REF+FTL GD+Y RY S+N+
Sbjct: 12  EYDASS-PQVMQLFYRRLFPYRPLYLWLNQEQIPSKLFTHREFAFTLAGDVYLRYQSFNN 70

Query: 62  PNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCC 119
            +E K  + +  P + ++G  Y   PKD   L       + +ELVFDIDMTDYD++R CC
Sbjct: 71  VDEFKVSIARHVPSRFEIGPQYSARPKDRKTLASGALQAQRRELVFDIDMTDYDEIRTCC 130

Query: 120 SGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGR 179
           +   IC++CW +++ A K+LD +LRE F F+ LLWV+SGRRGIHCW+ D+ AL L    R
Sbjct: 131 TDKTICKRCWGFIAAAVKVLDHSLRETFGFKHLLWVYSGRRGIHCWISDQTALDLTDDQR 190

Query: 180 SCLAEYMSVLTAN--PVKKVFL---TGDV-LHPHLKRAKLIIEDQFEKL-LEEQELLSTK 232
             L  ++ V+       KKV +   TGD  LHP L  A   ++  F  L + +Q+    +
Sbjct: 191 RALVTFLEVIKGGKEQSKKVNVRGPTGDAPLHPFLSEALETLKPLFSSLCIYDQDCFKGE 250

Query: 233 ERQTKVLGLV-SNGDIRAEIEKEWTRIGPGQDVEKWDRLVA-IIKHHQAKNSDRKLKYAI 290
           +    +L ++ ++  +   +  +W +       +KW  L++ I KH + +    K   A+
Sbjct: 251 KGWEALLAILPTDRAVIGPLRAKWEKNPDSSSDDKWRELMSEIAKHKKEEAIMNKFTKAV 310

Query: 291 EEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           E+++L+  YPR+D  VSK  NHLLKSPFCVHP TG++C
Sbjct: 311 EDVVLQYTYPRIDAEVSKHRNHLLKSPFCVHPGTGRVC 348


>gi|50546577|ref|XP_500758.1| YALI0B11396p [Yarrowia lipolytica]
 gi|49646624|emb|CAG83005.1| YALI0B11396p [Yarrowia lipolytica CLIB122]
          Length = 441

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 127/332 (38%), Positives = 187/332 (56%), Gaps = 10/332 (3%)

Query: 7   PESLTEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSPNE 64
           PE   E L  +Y R FP+    RWL +   N  +F  REF+FTL    Y R+ S+    E
Sbjct: 28  PEVDFEGLGLFYSRFFPFKTLHRWLNHSPRNGRDFAYREFAFTLRNGAYLRFNSFAEERE 87

Query: 65  LKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGA 122
            K  +    P++ ++GA+Y   PKD   L+  VF P  KELVFDIDM DYD  R CCSGA
Sbjct: 88  FKSRVDDLVPERFEIGAVYSHSPKDRKKLRKDVFKPVSKELVFDIDMDDYDKFRTCCSGA 147

Query: 123 DICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCL 182
            +C KCWRY+ +A K++++AL+EDF ++ ++WVFSGRRG H WV D+ A  L+ R RS +
Sbjct: 148 SVCNKCWRYVQVAVKMVNSALKEDFGYKHIMWVFSGRRGAHAWVSDKKARDLNDRQRSTV 207

Query: 183 AEYMSVLTANPVKKVFLTGDV---LHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKV 238
             Y++       K       +   LHPHL+R   I    F E +L+ Q+  + +E    +
Sbjct: 208 VSYIAAFGDATDKSAAGNSSLRRPLHPHLQRCLDIATTVFNEVVLQTQDPWANEEGSKFL 267

Query: 239 LGLVSNGDIRAEIEKEWTRIG-PGQDVEKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLE 296
           L  + +  +R  + ++W + G      +KW  +  +     + N D ++L  A + ++L 
Sbjct: 268 LAFIPDEKLRRALAEKWKKNGDSASSADKWSDIDKVASSGVSANLDTKRLVEAKQNVILT 327

Query: 297 LAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +  P+LD  VS+G  HLLKSPFC+HPKT  +C
Sbjct: 328 VFMPKLDGAVSRGTGHLLKSPFCIHPKTSNVC 359


>gi|225554871|gb|EEH03165.1| DNA primase [Ajellomyces capsulatus G186AR]
          Length = 567

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 197/335 (58%), Gaps = 18/335 (5%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           +E +  +Y R+FP+    +WL +      +F  REF+FTL  D Y RY S+ +   L+K+
Sbjct: 97  SETMYAFYLRLFPFKYLFQWLNHDVKPSPDFGNREFAFTLQNDAYLRYQSFPNAELLRKE 156

Query: 69  LIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
           ++   P + ++G +Y   P+D     + S+F P  KELVFDID+TDYDD+R CC+ A+IC
Sbjct: 157 ILHLKPSRFEIGPVYSTNPRDRKTLRKASLFKPVSKELVFDIDLTDYDDIRTCCNKANIC 216

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
           +KCW ++++A K++DTALR+DF F+ +LWV+SGRRG H WVCD  A +L    R  +A Y
Sbjct: 217 QKCWAFVTMAIKVIDTALRDDFGFEHILWVYSGRRGAHAWVCDPRARSLPDDRRKAIAGY 276

Query: 186 MSVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLV 242
           + V+   +   KKV L    LHPH+ R+  I++  F   +L  Q+  S   +  ++L L+
Sbjct: 277 LEVIRGGSQSGKKVNLK-RPLHPHVSRSLEILKPHFASTILVAQDTFSKPAQAEQLLALL 335

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNS---------DRKLKYAIEEI 293
            +  +   + ++W          KW+ + A+ K  +++ +          + L  A ++I
Sbjct: 336 PDKPLADALRRKWDSAPERSSTSKWNDIDAVAKSAKSRGAAAAGQQSLDTKALLEAKQDI 395

Query: 294 LLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            LE  YPRLD  VSK + HLLKSPF VHP TG++C
Sbjct: 396 ALEYTYPRLDAEVSKKLIHLLKSPFVVHPGTGRVC 430


>gi|448532249|ref|XP_003870387.1| Pri1 protein [Candida orthopsilosis Co 90-125]
 gi|380354742|emb|CCG24257.1| Pri1 protein [Candida orthopsilosis]
          Length = 460

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 131/336 (38%), Positives = 194/336 (57%), Gaps = 23/336 (6%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + FYY+R+ P+     W  +      +F  REF++      Y RY SY++ +E KK +I 
Sbjct: 35  MQFYYQRLLPFKYIFTWTSHSPKPTKDFTMREFAYEYRSTAYKRYNSYSNVDEFKKAVIS 94

Query: 72  RCPQKIDLGAIYDICPKD--HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GA+Y + PK+  +L      P  KELVFDID+TDYD++R CC G DIC KCW
Sbjct: 95  ANPTRFEIGAVYKVAPKERYNLPKQALKPVSKELVFDIDLTDYDEIRTCCQGTDICCKCW 154

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           +++ +   I++  LR+DF FQ ++WVFSGRRG HCWV D+ A  LD   R  + EY+ VL
Sbjct: 155 KFIQVGSTIIEDCLRQDFGFQHMVWVFSGRRGAHCWVSDKRARELDENSRRSIVEYLDVL 214

Query: 190 TANPVK--KVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLST---KERQTK------ 237
                K  K F      HPH++R+  I++ +F E +LE+Q+   T    E  +K      
Sbjct: 215 GGKHAKGSKGFHVRKPFHPHVERSFEIMKKRFIEIILEDQDPWYTDPNTESDSKSWKQVD 274

Query: 238 -VLGLVSNGDIRAEIEKEWT---RIGPGQDVEKWDRLVAIIKHHQAKNSD-RKLKYAIEE 292
            +L  + N +++AE++K+W    ++   +D  KW+ L  +       NS    L  A +E
Sbjct: 275 ELLSFMPNKELQAELKKKWQGECKMSTSKD--KWEDLNTVAAKVLKSNSQVASLSDAKKE 332

Query: 293 ILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           I++   YPRLDI VS+ + HLLKSPFCVHP TG +C
Sbjct: 333 IIIYFLYPRLDIEVSRQIIHLLKSPFCVHPGTGNVC 368


>gi|219127025|ref|XP_002183745.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404982|gb|EEC44927.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 458

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 141/343 (41%), Positives = 193/343 (56%), Gaps = 29/343 (8%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNG----DIYARYISYNSPNEL 65
           E+L  YY R+FPY     WL YG  D   F  REFSFT+      +IY RY S+ + +EL
Sbjct: 45  ELLSVYYARLFPYSLLHTWLSYGTRDPTVFAHREFSFTIEPVPGEEIYLRYQSFRNESEL 104

Query: 66  KKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNC-CSGADI 124
              + +R P KID+GA++   P+D        P  +ELVFDID+TDYDDVR C C+GA I
Sbjct: 105 AAAVRQRRPTKIDIGAVFSHAPRDRAVVPTLRPVQRELVFDIDLTDYDDVRACGCTGARI 164

Query: 125 CEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAE 184
           C  CW +M  A  ++DT LR+DF F  + WV+SGRRGIH WVCD AA  L    R+ +A 
Sbjct: 165 CPVCWGFMRTAVAVMDTVLRDDFGFGHVAWVYSGRRGIHAWVCDPAARELTDAARAAVAS 224

Query: 185 YMSV-LTANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQ--ELLSTKERQTKVLG 240
           Y  + L ++  ++V LT   LHP ++RA  ++E  F E +L  Q   LL+T       L 
Sbjct: 225 YCEIQLGSDQNQQVVLTHP-LHPAIQRALQVLEPWFVEHVLPAQGHGLLATPAACDAFLQ 283

Query: 241 LVSN--GDIRAEIEKEW-TRIGPGQDVEKWDRL------------VAIIKHHQAKNSDRK 285
            + +    +RA ++  W TR       EKW  +             A ++   +     +
Sbjct: 284 TIPDAAATVRAHLQTSWATRT--HAPAEKWREVRTHFQIFLEKSATAKVRKTMSLPERER 341

Query: 286 LKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           L+     ++L  +YPRLDI+VSK  NHLLKSPFCVHPKTG++C
Sbjct: 342 LETWTAGVVLRYSYPRLDINVSKMRNHLLKSPFCVHPKTGRVC 384


>gi|389749098|gb|EIM90275.1| prim-pol domain-containing protein [Stereum hirsutum FP-91666 SS1]
          Length = 415

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 128/342 (37%), Positives = 201/342 (58%), Gaps = 16/342 (4%)

Query: 1   MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYIS 58
           M+D   P S  E++  +Y+R++P+    +WL + +     +  RE +++L  D+Y RY S
Sbjct: 1   MSDDLSPSS-PEVMNAFYRRLYPFKSVFKWLNHEHTPTRQWTNREIAYSLQNDVYLRYQS 59

Query: 59  YNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVR 116
           + + +E KK      P + ++G +Y   PKD   ++++  TP ++ELVFDIDMTDYD +R
Sbjct: 60  FANADEFKKQTCTLNPTRFEIGPVYSARPKDKKVMRNTALTPLLRELVFDIDMTDYDSIR 119

Query: 117 NCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDG 176
            CC+GA IC++CW ++S A  ++D+++RE F +Q LLWV+SGRRGIH WV D  A+ L  
Sbjct: 120 TCCTGASICKRCWGFISAAVIVIDSSIREHFGYQHLLWVYSGRRGIHLWVSDREAMELTD 179

Query: 177 RGRSCLAEYMSVLTANP--VKKVFL-------TGDVLHPHLKRAKLIIEDQFEKL-LEEQ 226
             R  +  +M+V+       KKV +       T   L P +K A  I+  +F  L L +Q
Sbjct: 180 EQRRAVVGWMTVVAGGKEMAKKVNVRINGGKGTEPSLPPAVKDALGILVGRFTDLILADQ 239

Query: 227 ELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKL 286
           +    + R  ++L L+ +  I   ++ +W         EKWD L   I+ ++ K+    +
Sbjct: 240 DCFQERARWEELLKLIPDKSIVRSLQDKWDDDEDRTSEEKWDNLKREIQKYK-KSERGPM 298

Query: 287 KYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
             A+E+I+L+  YPR+D  VSK  NHLLK+PFCVHPKTG+IC
Sbjct: 299 MAALEDIVLQYTYPRIDAEVSKHRNHLLKAPFCVHPKTGRIC 340


>gi|385304207|gb|EIF48234.1| dna primase small subunit [Dekkera bruxellensis AWRI1499]
          Length = 428

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 128/336 (38%), Positives = 186/336 (55%), Gaps = 16/336 (4%)

Query: 2   ADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISY 59
           A  Y P S       YY+   PY     WL +     D+F KREF+F      Y RY S+
Sbjct: 31  AKPYKPSSAD--FSNYYEYFMPYKSIFLWLNHSQAPQDDFTKREFAFEYKSGAYQRYNSF 88

Query: 60  NSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRN 117
            +  E +  ++K  P + ++GA+Y + PK H  +  S   P+MKE V DID+TDYDD+R 
Sbjct: 89  ENAKEFRDTVVKAKPVRFEVGAVYPVAPKLHKTVSKSXMKPQMKEFVLDIDLTDYDDIRT 148

Query: 118 CCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGR 177
           CCSG  IC KCW+++++A KI+D+ALREDF F+ L+WVFSGRRG+HCW+ D     LD  
Sbjct: 149 CCSGTKICPKCWKFITLAIKIVDSALREDFGFKKLIWVFSGRRGVHCWISDYRVRVLDES 208

Query: 178 GRSCLAEYMSVLTANPVKKVFLT-GDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQ 235
            R  + EY+ VL      K  ++     HPHL+R+  I+ D F + ++ EQ+    ++R 
Sbjct: 209 RRRAIVEYLDVLNVKSKNKAGISLRKPYHPHLERSFNILRDNFVDVVIREQDPWRFEDRY 268

Query: 236 TKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKW---DRLVAIIKHHQAKNSDRKLKYAIEE 292
            ++   + +  + + + K W          KW   DRL   +K       D K      E
Sbjct: 269 KELARNIPDYRLSSALLKHWKEDPSSSSATKWRDVDRLYDEMKVKSFNLQDWK-----RE 323

Query: 293 ILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           ++ +  YPRLD+ VS+ + HLLKSPFC+HP TG +C
Sbjct: 324 MIFKTMYPRLDVEVSRQMIHLLKSPFCIHPGTGNVC 359


>gi|212546425|ref|XP_002153366.1| DNA primase subunit Pri1, putative [Talaromyces marneffei ATCC
           18224]
 gi|210064886|gb|EEA18981.1| DNA primase subunit Pri1, putative [Talaromyces marneffei ATCC
           18224]
          Length = 506

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 122/324 (37%), Positives = 192/324 (59%), Gaps = 7/324 (2%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKD 68
            E++  +Y+R+FP+ P  +WL +G +   +   REF+  L  +   RY S+ + +  +K+
Sbjct: 87  AEVMLAFYQRLFPFRPMFQWLNHGVVPSPDMINREFAVFLQNEAVLRYQSFATADLFRKE 146

Query: 69  LIKRCPQKIDLGAIYDICPKDHLQH--SVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           +++  P + ++G +Y   P+D      +   P  KELVFDIDMTDYDDVR CCS A+IC 
Sbjct: 147 ILRLNPTRFEIGPVYSTNPRDRKNRPGTKMNPVAKELVFDIDMTDYDDVRTCCSKANICH 206

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW ++++A K++DTALREDF F+ +LWV+SGRRG H WV D  A  L    R  +A Y+
Sbjct: 207 KCWSFITMAIKVVDTALREDFGFEHILWVYSGRRGAHAWVGDHRARNLPDDRRKAIAGYL 266

Query: 187 SVLTAN-PVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVSN 244
            ++  N    K       LHPH+ R+  ++E  F +  L +Q++   +++  ++LGL+ +
Sbjct: 267 ELVKGNDKSGKRVNVKRPLHPHVARSVKLLEPHFNQTTLIDQDVFLGEQQAERLLGLLPD 326

Query: 245 GDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDI 304
             +   + ++W          KW+ +V + K     ++ R LK A  +I+LE  YPRLD 
Sbjct: 327 KKLNDALRRKWDSTPDRSSTNKWNDIVTLAKTINGIDA-RALKDARYDIVLEYTYPRLDA 385

Query: 305 HVSKGVNHLLKSPFCVHPKTGKIC 328
            VSK + HLLKSPF +HP TG++C
Sbjct: 386 EVSKKMIHLLKSPFVIHPGTGRVC 409


>gi|295668429|ref|XP_002794763.1| DNA primase small subunit [Paracoccidioides sp. 'lutzii' Pb01]
 gi|226285456|gb|EEH41022.1| DNA primase small subunit [Paracoccidioides sp. 'lutzii' Pb01]
          Length = 564

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 129/334 (38%), Positives = 193/334 (57%), Gaps = 23/334 (6%)

Query: 17  YYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCP 74
           +Y R+FP+    +WL +      +F  REF+FTL  D Y RY S+ S   L+K+++   P
Sbjct: 111 FYLRLFPFRYLFQWLNHAVKPSPDFGNREFAFTLQNDAYLRYQSFPSAELLRKEILHLNP 170

Query: 75  QKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRY 131
            + ++G +Y   P+D     + S F P  KELVFDID+TDYDDVR CC+ A+IC KCW +
Sbjct: 171 SRFEIGPVYSTNPRDRKSLRKASSFKPIAKELVFDIDLTDYDDVRTCCTKANICSKCWSF 230

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL-- 189
           +++A K++DTALREDF F+ +LWV+SGRRG H WVCD  A +L    R  +A Y+ V+  
Sbjct: 231 VTMAIKVIDTALREDFGFEHVLWVYSGRRGAHAWVCDAKARSLSDDRRKAIAGYLEVVRG 290

Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVSNGDIR 248
            +   K+V +    LHPH+ R+  I++  F   +L  Q+  S+  +  ++L L+ +  + 
Sbjct: 291 GSQSGKRVNIKR-PLHPHVARSLEILKPYFASTILGGQDTFSSAAQAEQLLSLLPDKPLV 349

Query: 249 AEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD--------------RKLKYAIEEIL 294
             + K+W          KW+ + A+ K  +++  D              + L  A ++I 
Sbjct: 350 DALRKKWDSAPGRSSTSKWNDIDALAKSVRSRGPDGKGKGGGGGKALDTKALLEAKQDIA 409

Query: 295 LELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           LE  YPRLD  VSK + HLLKSPF VHP TG++C
Sbjct: 410 LEYTYPRLDAEVSKKLIHLLKSPFVVHPGTGRVC 443


>gi|299751700|ref|XP_001830432.2| DNA primase catalytic subunit [Coprinopsis cinerea okayama7#130]
 gi|298409494|gb|EAU91312.2| DNA primase catalytic subunit [Coprinopsis cinerea okayama7#130]
          Length = 404

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 127/323 (39%), Positives = 189/323 (58%), Gaps = 11/323 (3%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCP 74
           +Y+R++P+     WL + ++    F  REF+FTL GD+Y RY S+NS  +LKKD+    P
Sbjct: 4   FYRRLYPFKSIYSWLNHDSMPTRMFTHREFAFTLQGDVYLRYRSFNSAEDLKKDICHLNP 63

Query: 75  QKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYM 132
            + ++G +Y   P+D   L+   FTP ++ELVFDIDMTDYD VR CCS A IC++CW ++
Sbjct: 64  TRFEIGPVYTGRPRDKKTLRPGSFTPTLRELVFDIDMTDYDLVRTCCSDAAICKRCWTFI 123

Query: 133 SIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTAN 192
           S A K+LD ++RE F ++ LLWV+SGRRGIH W+ D  A+ L    R  +  +M+V+   
Sbjct: 124 SAAVKVLDRSIREHFGYEKLLWVYSGRRGIHLWISDVEAMELSDAQRKAIVGWMNVVNVG 183

Query: 193 PVK-----KVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLVSNGD 246
             +      V     VL P L+ A   +   F  L L +Q+  +++     +L  V    
Sbjct: 184 SRETSKKLNVRTASKVLPPPLQDALEELVPIFSDLILGDQDCFASENGWETLLEFVPIPQ 243

Query: 247 IRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDR-KLKYAIEEILLELAYPRLDIH 305
           +   + ++W+        EKW  L A  +     +  R +L +A+E+I+L   YPR+D  
Sbjct: 244 VAERLRRKWSNDPDRSSDEKWADLKAEAREFDKNSPQRTQLMHAMEDIILHYTYPRIDAE 303

Query: 306 VSKGVNHLLKSPFCVHPKTGKIC 328
           VSK  NHLLK+PFCVHPKTG++C
Sbjct: 304 VSKHRNHLLKAPFCVHPKTGRVC 326


>gi|209881394|ref|XP_002142135.1| DNA primase small subunit [Cryptosporidium muris RN66]
 gi|209557741|gb|EEA07786.1| DNA primase small subunit, putative [Cryptosporidium muris RN66]
          Length = 435

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 130/348 (37%), Positives = 202/348 (58%), Gaps = 27/348 (7%)

Query: 3   DKYDPESLTEM--LPFYYKRIFPYGPYLRWLFY----GNLDNFRKREFSFTL-----NGD 51
           + +D +S+ +   L F+Y RI+P+    +WL Y    G+ +    REFS TL       +
Sbjct: 4   ENFDDDSIVDKNDLKFFYSRIYPFDIMSKWLSYELGTGSSNLLPNREFSMTLISNMGEDE 63

Query: 52  IYARYISYNSPNELKKDLIKRCPQKIDLGAIYDI-CPKDHLQHSVFTPKMKELVFDIDMT 110
           IY R+ SY + ++LK++L+ R P K D+GAIY+I   +  +    FTP  +ELVFDIDM 
Sbjct: 64  IYLRWQSYMTIDQLKQELVSRVPHKFDIGAIYNIPVAEKDISPLGFTPYQRELVFDIDMN 123

Query: 111 DYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEA 170
           DYDD+R CC    IC KCW Y+++A K++DT+L EDF F+ +LW++SGRRG+HCWVCD  
Sbjct: 124 DYDDIRTCCKDKKICNKCWLYIALAIKLIDTSLHEDFGFRHVLWIYSGRRGVHCWVCDTK 183

Query: 171 ALALDGRGRSCLAEYMSVLTANPVK------KVFLTGDVLHPHLKRAKLIIEDQFEKLLE 224
           A  +    R+ + +Y++++T N  +      K  ++   LHP ++R   I    F++++E
Sbjct: 184 ARLIPTEARTSIVDYLTLVTGNDNRKKKVNLKFAISNSKLHPFIERCYSICIQYFDRIIE 243

Query: 225 EQELLS-TKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQ---DVEKWDRLVAIIKHHQAK 280
           EQ+L +   +   K+L  VS+     +I K W      +     E W  L  I++    K
Sbjct: 244 EQDLFNHNSDHIQKILDHVSDDSKVLQILKIWISNNTCKGFTSTEFWLALKKILEEVHGK 303

Query: 281 NSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           N        ++EI+   +YPRLD +VSK + HLLK+P C+H  TG++C
Sbjct: 304 NCT-----TLKEIVFAFSYPRLDTNVSKDLGHLLKAPMCIHHGTGRLC 346


>gi|242823400|ref|XP_002488065.1| DNA primase subunit Pri1, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218712986|gb|EED12411.1| DNA primase subunit Pri1, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 508

 Score =  241 bits (615), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 124/324 (38%), Positives = 194/324 (59%), Gaps = 9/324 (2%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           E++  +Y+R+FP+ P  +WL +G +   +   REF+  L  +   RY S+ + +  +K++
Sbjct: 93  EVMLAFYQRLFPFRPMFQWLNHGVIPSPDMVNREFAVFLQNEAVLRYQSFATADLFRKEI 152

Query: 70  IKRCPQKIDLGAIYDICPKDHLQH--SVFTPKMKELVFDIDMTDYDDVRNCCSGADICEK 127
           ++  P + ++G +Y   P+D      +   P  KELVFDIDMTDYDDVR CCS A+IC K
Sbjct: 153 LRLNPTRFEIGPVYSTNPRDRKSRPGTQMKPVAKELVFDIDMTDYDDVRTCCSKANICHK 212

Query: 128 CWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMS 187
           CW ++++A KI+DTALREDF F+ +LWV+SGRRG H WV D  A  L    R  +A Y+ 
Sbjct: 213 CWAFITMAIKIVDTALREDFGFEHILWVYSGRRGAHAWVGDHRARTLPDDRRKAIAGYLE 272

Query: 188 VLTAN--PVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVSN 244
           ++  N    K+V L    LHPH+ R+  ++E  F +  L +Q++   + +  ++LGL+ +
Sbjct: 273 LVKGNDKSGKRVNLKR-PLHPHVARSVKLLEPYFNQTTLIDQDVFLGESQAERLLGLLPD 331

Query: 245 GDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDI 304
             +   + ++W          KW+ +V + K     ++ + LK A  +I+LE  YPRLD 
Sbjct: 332 KKLSEALRRKWDSTPDRTSTNKWNDIVTLAKTINGLDA-KALKDARYDIVLEYTYPRLDA 390

Query: 305 HVSKGVNHLLKSPFCVHPKTGKIC 328
            VSK + HLLKSPF +HP TG++C
Sbjct: 391 EVSKKMIHLLKSPFVIHPGTGRVC 414


>gi|302498517|ref|XP_003011256.1| hypothetical protein ARB_02538 [Arthroderma benhamiae CBS 112371]
 gi|291174805|gb|EFE30616.1| hypothetical protein ARB_02538 [Arthroderma benhamiae CBS 112371]
          Length = 539

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 128/343 (37%), Positives = 195/343 (56%), Gaps = 27/343 (7%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSPN------ 63
           E +  +Y+R+FP+    +WL +G     +F  REF+FTL  D Y RY S+ + +      
Sbjct: 94  EFMSAFYQRLFPFKYLFQWLNHGVKPSTDFGNREFAFTLPNDAYLRYQSFQTADAYVYTF 153

Query: 64  ------------ELKKDLIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDID 108
                        L KD+++  P + ++G +Y   P+D     +   F P  KELVFDID
Sbjct: 154 LPQSGFKLTSLHSLHKDVMRLNPSRFEIGPVYSTNPRDRKTLRKPGAFKPISKELVFDID 213

Query: 109 MTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCD 168
           +TDYDD+R CCS A+IC KCW +++++ K++D ALREDF FQ +LWV+SGRRG H WVCD
Sbjct: 214 LTDYDDIRTCCSKANICLKCWAFVTMSIKVIDAALREDFGFQHILWVYSGRRGAHAWVCD 273

Query: 169 EAALALDGRGRSCLAEYMSVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEE 225
           + A  L    R  +A Y+ V+   +   K+V L    LHPH+ R+   + + F   +L +
Sbjct: 274 KRARNLPDDRRRAIAGYLEVVRGGSQSGKRVNLRR-PLHPHITRSLDTLREYFASTVLVD 332

Query: 226 QELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK 285
           Q+  S  ++  +++ L+ +  +RA ++K+W          KW  +  + K +      + 
Sbjct: 333 QDPFSRPDQAARLIELLPDKTLRAALQKKWDSAPGRSSSNKWADIDTVAKANSRGLDTKA 392

Query: 286 LKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           L  A ++I+LE  YPRLD  VSK + HLLKSPF VHP TG++C
Sbjct: 393 LLEAKQDIVLEYTYPRLDAEVSKKLIHLLKSPFVVHPGTGRVC 435


>gi|294924536|ref|XP_002778830.1| DNA primase small subunit, putative [Perkinsus marinus ATCC 50983]
 gi|239887634|gb|EER10625.1| DNA primase small subunit, putative [Perkinsus marinus ATCC 50983]
          Length = 430

 Score =  240 bits (613), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 147/361 (40%), Positives = 207/361 (57%), Gaps = 45/361 (12%)

Query: 1   MADKYDPESLT-EMLPFYYKRIFPYGPYLRWLFY------GNLDNFR-----KREFSFTL 48
           MA+      +T E L  YY+R+FP   + RWL Y      G +   +     +REFSFTL
Sbjct: 12  MANSVQSAEVTPEALRIYYERLFPSRDFCRWLSYREDGPGGKVAADKGGFLFRREFSFTL 71

Query: 49  NGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQ-------HSVFTPKMK 101
            GDIY RY+S++  ++ +K L+ R P KID+GA+++I P  + Q          F P+ +
Sbjct: 72  PGDIYCRYLSFHGQHDFRKALLDRVPDKIDIGAVFNIPPTHYQQFGLTGGSGGGFQPQQR 131

Query: 102 ELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRG 161
           ELVFDIDM DYDDVRNCC G+ IC+ CW +++ A KIL+ ALR+DF F+ +L+VFSGRRG
Sbjct: 132 ELVFDIDMDDYDDVRNCCKGSSICKLCWTFIACAVKILNRALRDDFGFKHILFVFSGRRG 191

Query: 162 IHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFE- 220
           +HCWVCDE A  L    RS +AEY+ +L     K +  +    HPH++R   I       
Sbjct: 192 VHCWVCDETARKLSNEQRSAVAEYLQLLNGGRCKHIRSSAQQRHPHVRRGIDICRKYLLM 251

Query: 221 ---KLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHH 277
               LLE Q LL           +V  GD +  ++K    + P  D        + +   
Sbjct: 252 PECGLLEGQRLLDAP--------MVEGGD-KNLLQKVVNTVIPATDPVGRGEAKSFL--- 299

Query: 278 QAKNSDRKL----------KYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
            +K S R++             ++EI+LE+AYPRLDI+VSK +NHLLK+PFC+HPKTG++
Sbjct: 300 SSKRSSREVWQWLTARCSNSVLLDEIVLEMAYPRLDINVSKQMNHLLKAPFCIHPKTGRV 359

Query: 328 C 328
           C
Sbjct: 360 C 360


>gi|149029726|gb|EDL84897.1| DNA primase, p49 subunit [Rattus norvegicus]
          Length = 271

 Score =  240 bits (613), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 120/244 (49%), Positives = 165/244 (67%), Gaps = 6/244 (2%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSP 62
           +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N+ 
Sbjct: 4   FDPAELPELLKLYYRRLFPYAQYYRWLNYGGVTKNYFQHREFSFTLKDDIYIRYQSFNNQ 63

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR CCS
Sbjct: 64  SDLEKEMQKMNPYKIDIGAVYSHRPSQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCS 123

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    RS
Sbjct: 124 SADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRS 183

Query: 181 CLAEYMSVLT-ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKV 238
            + EY+S++   + VKK     + +HP ++++  II+  FE+  L +Q++L  KE   K+
Sbjct: 184 GIVEYLSLIKGGHDVKKKVHLNEKVHPFVRKSINIIKKYFEEYALVDQDILENKENWDKI 243

Query: 239 LGLV 242
           L LV
Sbjct: 244 LALV 247


>gi|353241683|emb|CCA73481.1| related to DNA primase 48K protein PRI1 [Piriformospora indica DSM
           11827]
          Length = 443

 Score =  240 bits (612), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 132/355 (37%), Positives = 205/355 (57%), Gaps = 32/355 (9%)

Query: 4   KYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL-------------DNFRKREFSFTLNG 50
           + DP+S  E++  +Y R++P+     WL +  +              N+  REF+FTL  
Sbjct: 13  QADPKS-PEVMSAFYSRLYPFKSLYTWLSHTPVPISTKDAGVPKSSTNWTHREFAFTLQN 71

Query: 51  DIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDID 108
           D Y RY S+   ++LKK +++  P + ++GA+Y+  PKD   L  S   P  +ELVFDID
Sbjct: 72  DAYLRYNSFQEVDDLKKQIMRLIPSRFEIGAVYNARPKDKKTLPASALQPLRRELVFDID 131

Query: 109 MTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCD 168
           MTDYD +R CC+G  IC +CW ++S A  +LDT LR DF +QLLLWV+SGRRGIHCWV D
Sbjct: 132 MTDYDAIRTCCTGGAICRRCWAFISAAVSVLDTTLRRDFGYQLLLWVYSGRRGIHCWVSD 191

Query: 169 EAALALDGRGRSCLAEYMSVLTANP--VKKVFL-TGDVLHPHLKRA-KLIIEDQFEKL-L 223
           E+A+ L    R  +  ++ V+      VKKV +     L P L+ +  ++ E+ F  + L
Sbjct: 192 ESAMVLTDDQRRAIMGWLEVVKGGKDMVKKVNVRVAGGLPPSLQSSLDILNENHFMPIVL 251

Query: 224 EEQELLSTKERQTKVLGLVSNGDIRAEIEKEW--------TRIGPGQDVEKWDRLVAIIK 275
           E+Q+   +++    +L L+ + ++ + + K+W        +         +W+ L   +K
Sbjct: 252 EDQDCFGSRQGWETLLELLPDREVVSNLRKKWEDEDEDDYSSKEQSISERRWNDLRREVK 311

Query: 276 HHQAKNSDRK--LKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
              AK S R+  L  A+E+I+L+  YPR+D  V+K  NHLLK+PFC+HP TG++C
Sbjct: 312 -AVAKGSTRRAALMAAMEDIVLQYTYPRIDAEVTKHRNHLLKAPFCIHPSTGRVC 365


>gi|393244737|gb|EJD52249.1| prim-pol domain-containing protein [Auricularia delicata TFB-10046
           SS5]
          Length = 401

 Score =  240 bits (612), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 122/325 (37%), Positives = 191/325 (58%), Gaps = 16/325 (4%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCP 74
           +Y +++P+    RWL +G+     F +REFS TL GDIY RY S+N+ ++ K +L +  P
Sbjct: 4   FYNQLYPFQSVFRWLNHGHQPTKLFTQREFSATLPGDIYLRYHSFNNTDDFKANLARLNP 63

Query: 75  QKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYM 132
            + ++GA+Y+  P+D   L+      + +E V DIDMTDYD+VR CC G  IC +CW ++
Sbjct: 64  TRFEIGAVYNARPRDKKTLRAGALQTQQREFVLDIDMTDYDNVRTCCVGKGICSRCWGFI 123

Query: 133 SIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTA- 191
           + A ++LD ALR  F F+ LLWV+SGRRGIHCWV D  A+ L    R  L  ++ V+   
Sbjct: 124 AAAVRVLDGALRTQFGFKHLLWVYSGRRGIHCWVSDPDAMDLTDDQRRVLMGWLDVVKNA 183

Query: 192 -------NPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLVS 243
                  +  +       +L+P  +         F++L L++Q+   T+E+  K+L L+ 
Sbjct: 184 KDMNKRLDARRNGVAASHILNP--QEGDPAYTHTFDRLVLQDQDCFKTEEQSKKLLELLG 241

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLD 303
           + +I A +  EW          KWD ++  +K  +   + + L+ ++E+I+L+  YPRLD
Sbjct: 242 HAEIAATLRAEWAAHPNRNSSSKWDDVLREVKKRK-DPALKALRSSLEDIILQYMYPRLD 300

Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
           + VSK  NHLLK+PFCVHP TG++C
Sbjct: 301 MEVSKRRNHLLKAPFCVHPSTGRVC 325


>gi|325179651|emb|CCA14049.1| DNA primase small subunit putative [Albugo laibachii Nc14]
          Length = 405

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 128/315 (40%), Positives = 191/315 (60%), Gaps = 25/315 (7%)

Query: 39  FRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVF 96
            R+REFSFTL    Y RY ++ +    +  ++K+ P KID+GA++ I P D   +  + F
Sbjct: 9   LRRREFSFTLENGTYIRYKTFQNHQGFRNAMLKQMPCKIDIGAVFSISPADKGKVNPTEF 68

Query: 97  TPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVF 156
             + +ELVFDID+TDYDD R CC  A  C +CW +M  A K+LDTALR+DF F+ +LWV+
Sbjct: 69  IAEERELVFDIDLTDYDDTRTCCREASTCSRCWSFMIAAVKVLDTALRQDFGFKHILWVY 128

Query: 157 SGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLII 215
           SGRRG+HCWV D+ A  L    R+ +  Y+S++  N   K+       LHP L RA  I+
Sbjct: 129 SGRRGVHCWVADDKARVLTNEARTSIVHYLSLVEGNENSKRKVQLRYPLHPSLHRATEIL 188

Query: 216 EDQFEKLL---EEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTR-IGPGQDVE-KWDRL 270
           E  F +++     Q++L+ ++  +K+L +V + +IR  + ++W R +   +  E KW+ L
Sbjct: 189 EPLFHEIILSENGQDILNDEKEFSKLLAMVPDEEIRNTLAEKWRRSLEEAESPESKWNDL 248

Query: 271 VAII------KHHQ------AKNSDRK-----LKYAIEEILLELAYPRLDIHVSKGVNHL 313
              +      K H+      +++S+RK     LK  ++EI+    YPRLD++VSK  NHL
Sbjct: 249 QKAVHSALGNKSHKRTYAAYSEDSERKKNLQQLKGCLQEIVCAYLYPRLDVNVSKQRNHL 308

Query: 314 LKSPFCVHPKTGKIC 328
           LKSPF VHPKTG+IC
Sbjct: 309 LKSPFAVHPKTGRIC 323


>gi|358336242|dbj|GAA54796.1| DNA primase small subunit, partial [Clonorchis sinensis]
          Length = 453

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 126/306 (41%), Positives = 181/306 (59%), Gaps = 32/306 (10%)

Query: 41  KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTP 98
           +REFSFTL GD+Y RY S+ + +E +K+L+K CP KID+GA+Y   PK H  +  S F P
Sbjct: 68  RREFSFTLAGDVYLRYQSFETSSEFRKELVKLCPHKIDIGAVYSTAPKKHRAILPSSFKP 127

Query: 99  KMKELVFDIDMTDYDDVRNCC------SGADICEKCWRYMSIACKILDTALREDFDFQLL 152
           + KELVFDID+TDYD+VR CC      + + +C +CW     A   +D ALREDF F+ L
Sbjct: 128 EWKELVFDIDLTDYDEVRYCCGEQSDNAKSAVCSRCWLLAQSAVLCVDRALREDFGFEHL 187

Query: 153 LWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAK 212
           LWV+SGRRG+HCWVCD AA  LD   R+ + EY++++     +       VLHP +  A 
Sbjct: 188 LWVYSGRRGVHCWVCDPAARKLDTVARTAIVEYLTLVRGGTSQP------VLHPCVDAAC 241

Query: 213 LIIEDQFEKLL---EEQELLSTKERQTKVLGLVSNG--DIRAEIEKEWTRIGPGQDVE-- 265
            I+  +F       + Q+L     R  K+L  +     ++R+ + ++W    P   +E  
Sbjct: 242 DILLPRFAAYCSTKQGQDLFGVPARLKKLLSYLPEDLEELRSHMAEDWLE-HPSNGMEEV 300

Query: 266 ---KWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHP 322
              +W+ L   +K H+  N        ++E++L   YPRLD +VS  +NHLLKSPFC+HP
Sbjct: 301 SQKRWNTLRTFLKEHKRNN-------VLKELVLNYTYPRLDANVSTSLNHLLKSPFCIHP 353

Query: 323 KTGKIC 328
           KTG +C
Sbjct: 354 KTGYVC 359


>gi|336375539|gb|EGO03875.1| hypothetical protein SERLA73DRAFT_175568 [Serpula lacrymans var.
           lacrymans S7.3]
 gi|336388658|gb|EGO29802.1| hypothetical protein SERLADRAFT_458085 [Serpula lacrymans var.
           lacrymans S7.9]
          Length = 391

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 121/322 (37%), Positives = 184/322 (57%), Gaps = 19/322 (5%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCP 74
           +Y+ ++P+ P  +WL +       F  REF+FTL GD+Y RY S+N+ +ELKK +    P
Sbjct: 4   FYRMLYPFKPIFKWLNHEQAPTKLFTHREFAFTLQGDVYLRYNSFNTADELKKQVCALNP 63

Query: 75  QKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYM 132
            + ++G +Y   PKD   ++ + F+P  +ELVFDIDMTDYD +R CCSGA IC +CW ++
Sbjct: 64  TRFEIGPMYTAKPKDKKTVRPAAFSPLKRELVFDIDMTDYDSIRTCCSGAGICRRCWGFI 123

Query: 133 SIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTA- 191
           + A  ++D+A+ E F F+ LLWV+SGRRGIH W+ D  A+ L    R  +  Y++V+   
Sbjct: 124 AAAVDVIDSAITEQFGFKELLWVYSGRRGIHLWISDPEAMDLTDEQRKAIVGYLTVIEGG 183

Query: 192 ----NPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLVSNGD 246
               N V         L P L+ A   +++ F+ L L++Q+   + E    +L L+ +  
Sbjct: 184 KEMRNKVNVRMGPRGPLPPSLQSAVNTLDNHFDDLILDDQDCFRSDEGWESLLQLIPDRK 243

Query: 247 IRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHV 306
               + K W+          W  L   +K + A          +++I+L+  YPRLD  V
Sbjct: 244 AVDTLRKNWSHASQRSSKGAWADLKKHMKDYPA---------VVDDIILQYTYPRLDTEV 294

Query: 307 SKGVNHLLKSPFCVHPKTGKIC 328
           SK  NHLLK+PFCVHPKTG++C
Sbjct: 295 SKHRNHLLKAPFCVHPKTGRVC 316


>gi|327357897|gb|EGE86754.1| DNA primase [Ajellomyces dermatitidis ATCC 18188]
          Length = 564

 Score =  237 bits (604), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 129/344 (37%), Positives = 196/344 (56%), Gaps = 27/344 (7%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           ++++  +Y R+FP+  + +WL +G     +F  REFSFTL  +   RY S+ +   L+K+
Sbjct: 98  SDIMHAFYLRLFPFRYFFQWLNHGVKPSPDFGNREFSFTLQNNAVLRYQSFPTAELLRKE 157

Query: 69  LIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
           ++   P + ++G IY   P+D     + S F P  KELVFDID+TDYDD+R CC+ A+IC
Sbjct: 158 ILHLKPTRFEIGPIYSTNPRDRKSLRKASRFRPVSKELVFDIDLTDYDDIRTCCTKANIC 217

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
           +KCW + ++A K++D ALREDF F+ +LWV+SGRRG H WVCD  A  L    R  +  Y
Sbjct: 218 QKCWSFATMAIKVVDAALREDFGFEHILWVYSGRRGAHAWVCDRRARDLPDDRRKAITGY 277

Query: 186 MSVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLV 242
           +  +   +   KKV L    LHPH+ R+  I++  F   +L EQ+  S  E+  ++L L+
Sbjct: 278 LEAIRGGSQSGKKVNLK-RPLHPHIARSLEILKPYFASTILVEQDTFSKPEQAEQLLSLL 336

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQ-------------AKNSDRKLKY- 288
            +  +   + ++W        V KW+ + A+ K  +             A +S+R +   
Sbjct: 337 PDKPLADALRRKWDSAPDRSSVNKWNDIDALAKSTKSRAEQQDGKGRGGASSSNRPIDTK 396

Query: 289 ----AIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
               A ++I LE  YPRLD  V K + HLLKSPF VHP TG++C
Sbjct: 397 ALLEAKQDIALEYTYPRLDAEVGKKLIHLLKSPFVVHPGTGRVC 440


>gi|344232432|gb|EGV64311.1| p48 polypeptide of DNA primase [Candida tenuis ATCC 10573]
          Length = 455

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/322 (38%), Positives = 191/322 (59%), Gaps = 9/322 (2%)

Query: 16  FYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRC 73
           FYY R+ P+    +WL +      +F  REF++      Y RY S+ S  + K  ++   
Sbjct: 28  FYYSRLLPFRYVFQWLNHSPKPTKDFTMREFAYEHRTGAYQRYNSFTSQEDFKNSVVSAN 87

Query: 74  PQKIDLGAIYDICPKD--HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRY 131
           P + ++GA+Y + PK+  +L  +   P  KELVFDID+TDYDD+R CCSG DIC+KCW++
Sbjct: 88  PTRFEIGAVYSVNPKERKNLPKNALKPLAKELVFDIDLTDYDDIRTCCSGTDICKKCWKF 147

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTA 191
           +++A KI+DTALREDF F+ L+WVFSGRRG HCW+ D+ A  LD   R  + EY+ +L +
Sbjct: 148 INVATKIIDTALREDFGFKHLIWVFSGRRGAHCWISDKRARELDETVRRSIVEYLDILGS 207

Query: 192 NPVKKVFLTGDV---LHPHLKRA-KLIIEDQFEKLLEEQE-LLSTKERQTKVLGLVSNGD 246
             +K    + ++    HPH++R+  L+  D  E +LE+Q+   + +E   ++L  +    
Sbjct: 208 KQLKMGKQSLNLKRPFHPHIERSFNLLKGDFIEIILEDQDPWRNNQEHIDELLSFIPEKS 267

Query: 247 IRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHV 306
           ++ +++ +W         +  D  V   K  + +     L  A ++I++   YPRLDI V
Sbjct: 268 LQEDLQSQWKGKSSSSKQKWEDINVTARKLLKNQVQLNMLNEAKKDIIIFYLYPRLDIEV 327

Query: 307 SKGVNHLLKSPFCVHPKTGKIC 328
           SK V HLLKSPFC+HP TG IC
Sbjct: 328 SKQVIHLLKSPFCIHPSTGNIC 349


>gi|164657644|ref|XP_001729948.1| hypothetical protein MGL_2934 [Malassezia globosa CBS 7966]
 gi|159103842|gb|EDP42734.1| hypothetical protein MGL_2934 [Malassezia globosa CBS 7966]
          Length = 471

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 200/373 (53%), Gaps = 57/373 (15%)

Query: 4   KYDPESLTEM-LPFYYKRIFPYGPYLRWLFYGNLD-----NFRKREFSFTLNGDIYARYI 57
           K + E L  M L  YY+R+ P+     WL   N D     +F  REF+ TL  D Y RY 
Sbjct: 30  KQESEPLDPMALLAYYRRLLPFKSLYTWL---NRDITPTRHFTHREFALTLQNDAYLRYQ 86

Query: 58  SYNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDV 115
           SY++ +E KK++ +  P + ++G +Y   PKD   LQ + F P  +ELVFDIDMTDYD++
Sbjct: 87  SYSTWDEWKKEVCRMNPSRFEIGPVYSAKPKDRKTLQKASFRPVARELVFDIDMTDYDEI 146

Query: 116 RNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALD 175
           R CCS   IC +CW+ +++A ++LD  LREDF F+ L+WV+SGRRGIHCWV D+ A  L 
Sbjct: 147 RTCCSDKSICHRCWKLIAVAAEVLDMTLREDFGFRHLVWVYSGRRGIHCWVSDQEAFQLA 206

Query: 176 GRGRSCLAEYMSVLT--ANPVKKVFLTGD------VLHPHLKRA---------------- 211
              R  L  ++ V+   AN  KKV L         VLHP L+RA                
Sbjct: 207 DDARKALVGWIEVVKGGANQAKKVALGSSMPGHHRVLHPSLRRALGQDVLRSTASASSAA 266

Query: 212 ----------KLIIEDQFEKLLEEQELLSTKERQTKVLGLV--SNGDIRAEIEKEWTRIG 259
                      L+     + +L +Q+     +R   +L L+  S  D  A ++ +W    
Sbjct: 267 TESHPRQGGSGLLQRAFVDVILRDQDCFRDPQRSDVLLALLPASETDAVARLQSKWAS-S 325

Query: 260 PGQDVEKWDRLVAIIKHHQAKNSDRKLK----YAIEEILLELAYPRLDIHVSKGVNHLLK 315
               V+KWD ++ +     A  S  ++K     A+E+I+L+  YPR+D  VSK  NHLLK
Sbjct: 326 TRSSVQKWDDVLDM-----AARSAERVKPMWIAALEDIVLQYTYPRIDAEVSKRQNHLLK 380

Query: 316 SPFCVHPKTGKIC 328
           +PF VHP TG++C
Sbjct: 381 APFVVHPSTGRVC 393


>gi|302845463|ref|XP_002954270.1| hypothetical protein VOLCADRAFT_95007 [Volvox carteri f.
           nagariensis]
 gi|300260475|gb|EFJ44694.1| hypothetical protein VOLCADRAFT_95007 [Volvox carteri f.
           nagariensis]
          Length = 466

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 195/354 (55%), Gaps = 40/354 (11%)

Query: 6   DPE-SLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNE 64
           +PE ++ E +P YY      G + +     +   F +REF FT   DI+ARY ++     
Sbjct: 11  EPEINVQEAMPSYYD-----GKHAQ----ADAHYFNRREFCFTFGNDIFARYQAFKDGTA 61

Query: 65  LKKDLIKRCPQKIDLGAIYDICPKDHLQHSV-FTPKMKELVFDIDMTDYDDVRNCCSGAD 123
           L++ + +RCP KID+G +Y   P+D  +    F P  +ELVFDID+TDYDDVR C SGA 
Sbjct: 62  LQEAIQRRCPSKIDIGPVYSANPQDRQKFGASFQPLERELVFDIDLTDYDDVRTCGSGAH 121

Query: 124 ICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLA 183
           IC KCW  M++A KI+D  LR +F FQ +LWV+SGRRG+HCWVCD +A  L    RS +A
Sbjct: 122 ICSKCWPLMAVAVKIIDAGLRSEFGFQNILWVYSGRRGVHCWVCDPSARQLTDEQRSAVA 181

Query: 184 EYMSVLTANP---VKKVFLTG-DVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKV 238
            + ++   +     K  FL G   +HP ++RA   +   + E +L  Q LL    +   +
Sbjct: 182 NWFAMYKGHEEGRAKIAFLGGVGAMHPAVERAARTLRAAWLETILPAQRLLEDGPKCETL 241

Query: 239 LGLVSNGDIRAEIEKEW------TRIGPGQDVEKWDRLVAIIKHHQAKNSDRK------- 285
           L  + +  +   ++K+W      +R     ++ +W  L   + +  A+   R        
Sbjct: 242 LQYLPDEGLIEAVKKKWASRSVISRTSEDINLVRWQVLETEVNNKLAEERSRGGKGAGGG 301

Query: 286 -----------LKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
                      L+  + EI++  +YPRLD+ VSK +NHLLK+PFCVHPKTGK+C
Sbjct: 302 GGGGNYKVTGPLERCLNEIIMAHSYPRLDMEVSKKMNHLLKAPFCVHPKTGKVC 355


>gi|344232433|gb|EGV64312.1| hypothetical protein CANTEDRAFT_114015 [Candida tenuis ATCC 10573]
          Length = 440

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 125/322 (38%), Positives = 191/322 (59%), Gaps = 9/322 (2%)

Query: 16  FYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRC 73
           FYY R+ P+    +WL +      +F  REF++      Y RY S+ S  + K  ++   
Sbjct: 13  FYYSRLLPFRYVFQWLNHSPKPTKDFTMREFAYEHRTGAYQRYNSFTSQEDFKNSVVSAN 72

Query: 74  PQKIDLGAIYDICPKD--HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRY 131
           P + ++GA+Y + PK+  +L  +   P  KELVFDID+TDYDD+R CCSG DIC+KCW++
Sbjct: 73  PTRFEIGAVYSVNPKERKNLPKNALKPLAKELVFDIDLTDYDDIRTCCSGTDICKKCWKF 132

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTA 191
           +++A KI+DTALREDF F+ L+WVFSGRRG HCW+ D+ A  LD   R  + EY+ +L +
Sbjct: 133 INVATKIIDTALREDFGFKHLIWVFSGRRGAHCWISDKRARELDETVRRSIVEYLDILGS 192

Query: 192 NPVKKVFLTGDV---LHPHLKRA-KLIIEDQFEKLLEEQE-LLSTKERQTKVLGLVSNGD 246
             +K    + ++    HPH++R+  L+  D  E +LE+Q+   + +E   ++L  +    
Sbjct: 193 KQLKMGKQSLNLKRPFHPHIERSFNLLKGDFIEIILEDQDPWRNNQEHIDELLSFIPEKS 252

Query: 247 IRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHV 306
           ++ +++ +W         +  D  V   K  + +     L  A ++I++   YPRLDI V
Sbjct: 253 LQEDLQSQWKGKSSSSKQKWEDINVTARKLLKNQVQLNMLNEAKKDIIIFYLYPRLDIEV 312

Query: 307 SKGVNHLLKSPFCVHPKTGKIC 328
           SK V HLLKSPFC+HP TG IC
Sbjct: 313 SKQVIHLLKSPFCIHPSTGNIC 334


>gi|254573272|ref|XP_002493745.1| Subunit of DNA primase, which is required for DNA synthesis and
           double-strand break repair [Komagataella pastoris GS115]
 gi|238033544|emb|CAY71566.1| Subunit of DNA primase, which is required for DNA synthesis and
           double-strand break repair [Komagataella pastoris GS115]
 gi|328354431|emb|CCA40828.1| DNA primase small subunit [Komagataella pastoris CBS 7435]
          Length = 455

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 123/320 (38%), Positives = 184/320 (57%), Gaps = 14/320 (4%)

Query: 17  YYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCP 74
           YY+R+ P+ P   WL +  +   +F  REF+F      Y RY S+ S  E K  +++  P
Sbjct: 56  YYERLLPFKPVFEWLNHSPIPQTDFTMREFAFEFKSGAYQRYNSFVSAKEFKDTVVRVTP 115

Query: 75  QKIDLGAIYDICP--KDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYM 132
            + ++GA+Y I P  +  +  ++  P  KE V DID+TDYDD+R CCS   IC KCW+++
Sbjct: 116 TRFEIGAVYSINPSKRKTVSKNMMKPIEKEFVVDIDLTDYDDIRTCCSKTGICHKCWKFI 175

Query: 133 SIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLT-- 190
           ++A +I+DTALR+DF F+ ++WVFSGRRG HCWV D+ A +++   R  + +Y+ VL   
Sbjct: 176 NVAIEIVDTALRDDFGFEHMIWVFSGRRGAHCWVSDQRARSMNDTLRKAVIDYLDVLNLK 235

Query: 191 ANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLG-LVSNGDIR 248
                +       LHPH++R+  I+   F E +LEEQ+     +R  + L   +S+   R
Sbjct: 236 GGHKNRNLTFRRPLHPHIERSTGILLKSFKEVILEEQDPWRDDKRAIEDLAKKISDAATR 295

Query: 249 AEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSK 308
             + K WT       +EKW  +       QAK       +  + ++L + YPRLDI VSK
Sbjct: 296 ESLAKLWTEKPGRSSLEKWKDI-----DTQAKKGFAVRDWKTDIVILSM-YPRLDIEVSK 349

Query: 309 GVNHLLKSPFCVHPKTGKIC 328
            + HLLKSPFC+HPKTG +C
Sbjct: 350 LMGHLLKSPFCIHPKTGNVC 369


>gi|406607228|emb|CCH41489.1| DNA primase small subunit [Wickerhamomyces ciferrii]
          Length = 494

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 120/326 (36%), Positives = 194/326 (59%), Gaps = 8/326 (2%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELK 66
           S ++ML +YY+R+ P+    +WL +      +F  REF++      Y RY S+ +  + K
Sbjct: 89  SSSDML-YYYERLLPFRYIFQWLNHSPKPQKDFTMREFAYEYRSGAYQRYNSFATLEDFK 147

Query: 67  KDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADI 124
             ++K  P + ++GA+Y + PKD   L  +   P  KELV DID+TDYDD+R CCS   I
Sbjct: 148 ASVMKANPTRFEVGAVYAVNPKDRKTLPKTAMKPLEKELVIDIDLTDYDDIRTCCSKTQI 207

Query: 125 CEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAE 184
           C KCW+++++A KI++ ALREDF F+ ++WVFSGRRG HCWV D+ A  L+   R  + E
Sbjct: 208 CTKCWKFITVATKIIEQALREDFGFEHMVWVFSGRRGAHCWVSDKRARHLEEPKRRAIVE 267

Query: 185 YMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVS 243
           Y+ +L     K++ L     HPH++R+  I++ +F + +L EQ+  +   +  ++L  + 
Sbjct: 268 YLDILKNKGNKRLNLRRP-YHPHIERSYEILKPEFLDIILTEQDPWADDVKAEELLKSLP 326

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLELAYPRL 302
           + ++   + K W+       ++KW  +    K    K  + R +  A ++I+LE  YPRL
Sbjct: 327 DKNLNDALRKLWSSSPGRSSIQKWKDIDETSKKIATKTFNYRTIVEAKQDIILETMYPRL 386

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           D+ V++ + HLLKSPFC+HP TG +C
Sbjct: 387 DVEVTRQMIHLLKSPFCIHPSTGNVC 412


>gi|409048157|gb|EKM57635.1| hypothetical protein PHACADRAFT_91098 [Phanerochaete carnosa
           HHB-10118-sp]
          Length = 419

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/327 (38%), Positives = 195/327 (59%), Gaps = 13/327 (3%)

Query: 13  MLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELKKDLI 70
           ML FY +R++P+     WL + +     F  REF+FTL GD+Y RY S+ + +ELKK + 
Sbjct: 1   MLTFY-RRLYPFKSIFHWLNHEHTPTKLFMNREFAFTLQGDVYLRYQSFTTADELKKQVC 59

Query: 71  KRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKC 128
              P + ++G +Y   P+D    +   F P M+ELVFDIDMTDYD +R CCS A IC +C
Sbjct: 60  AMNPTRFEIGPMYTARPRDKKLARPGAFQPVMRELVFDIDMTDYDSIRTCCSDASICSRC 119

Query: 129 WRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSV 188
           W ++++A K+LD ++R +F ++ LLWV+SGRRGIH W+ D  A+ L    R  L  +M+V
Sbjct: 120 WAFIAVAVKVLDQSIRNNFGYKYLLWVYSGRRGIHLWISDREAMELTDEQRKALVGWMTV 179

Query: 189 LTA--NPVKKVFLTGDV--LHPH-LKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVS 243
           +    +  KKV L   +  L P  L   ++++    + +L++Q+   ++E   ++L L+ 
Sbjct: 180 IQGGKDQHKKVNLRLSLRQLPPSILDSLEVLVPAFTDIILDDQDCFRSEEGWRELLHLIP 239

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKL--KYAIEEILLELAYPR 301
              + + +E +W +        KW+ +   IK    K S  +L    A+E+I+L+  YPR
Sbjct: 240 KNYVES-LEDKWEKDYDRSSHSKWEDVKNEIKTKTQKGSQPRLTGTTAMEDIILQYTYPR 298

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +D  VSK  NHLLK+PFCVHPKTG++C
Sbjct: 299 IDAEVSKHRNHLLKAPFCVHPKTGRVC 325


>gi|443917424|gb|ELU38144.1| DNA primase small subunit [Rhizoctonia solani AG-1 IA]
          Length = 402

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 201/337 (59%), Gaps = 26/337 (7%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELK 66
           S  E+   +Y+R++P+ P   WL   ++ +     REF+ TL GD+Y RY S+++  E+K
Sbjct: 9   SSPEITLAFYRRLYPFKPIYNWLNQDHVPSRLITNREFALTLPGDVYLRYNSFSNVEEMK 68

Query: 67  KDLIKRCPQKIDLGAIYDICPKD--HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADI 124
           K++ +  P + ++G +Y   P+D   L+    TP  +ELVFDIDMTDYD +R CC G  I
Sbjct: 69  KEICRYNPTRFEIGPVYSARPRDKKSLRPGALTPTARELVFDIDMTDYDSIRTCCVGKGI 128

Query: 125 CEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAE 184
           C +CW+++++A K+LD  LR+DF ++ L+WV+SGRRGIH W+ D+ A+ L    R  + +
Sbjct: 129 CRRCWKFIAVAVKVLDRTLRQDFGYKHLMWVYSGRRGIHLWISDKEAMDLTDDERRAIVQ 188

Query: 185 YMSVLTA--NPVKKVFL----TGDV---LHPHLKRAKLIIEDQFEKL-LEEQELLSTKER 234
           Y+ V+    +  KKV +    +G+    +HP L+++  I+ + F  L L +Q++ +  + 
Sbjct: 189 YIEVVKGGKDQTKKVNIRPSASGNATGPIHPALQKSLEILSEDFGDLILIDQDVFAKSDS 248

Query: 235 QTKVLGLVSNGDIRAEIEKEWTRIGPGQDVE---KWDRLVAIIKHHQAKNSDRKLKYAIE 291
             ++L L+ + D+   ++  W     G+++    KW  L + I   +        K  IE
Sbjct: 249 WQELLQLLPDKDLVNLLQMSWD----GREISSEAKWKELRSAISSMKDNR-----KTVIE 299

Query: 292 EILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +I+ + +YPR+D  VSK  NHLLK+PFCVHP TG+IC
Sbjct: 300 DIVFQYSYPRIDTEVSKHRNHLLKAPFCVHPGTGRIC 336


>gi|82596174|ref|XP_726153.1| DNA primase small subunit [Plasmodium yoelii yoelii 17XNL]
 gi|23481440|gb|EAA17718.1| DNA primase small subunit [Plasmodium yoelii yoelii]
          Length = 435

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 142/355 (40%), Positives = 198/355 (55%), Gaps = 41/355 (11%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLDN-----------FRKREFSFTLN-GD-----IYARY 56
           L FYY+ + P      WL Y N +N           F KREFSFT   GD     IY R+
Sbjct: 17  LIFYYRNLCPINDLCNWLNYKNDNNGKYTRLNDPNFFSKREFSFTCKKGDQGKDEIYMRW 76

Query: 57  ISYNSPNELKKDLIKR-CPQKIDLGAIYD--ICPKDHLQHSVFTPKMKELVFDIDMTDYD 113
           +S+NS NE K  L+    P K D+GA+Y+  +  KD    S F P  KEL+FDIDM DYD
Sbjct: 77  LSFNSANEFKDKLLSNFVPIKFDIGAVYNYPVSQKDQKGDS-FRPIQKELIFDIDMNDYD 135

Query: 114 DVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALA 173
           D+R CCS   +C+ CW++++IA  +LDT+LREDF FQ +LWV+SGRRGIHCWVCDE+   
Sbjct: 136 DIRTCCSDKKVCKLCWKFLTIAIVLLDTSLREDFAFQNILWVYSGRRGIHCWVCDESCRH 195

Query: 174 LDGRGRSCLAEYMSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLST 231
                R+ LA+Y+++L+ +    KKV + G   +P  +RA  I    F+ LLEEQ+    
Sbjct: 196 YTTDARAALADYLNILSGSDTKKKKVSIWGKEKYPMFERAFDICYKYFDVLLEEQDFFKK 255

Query: 232 KERQT-KVLGLV-----SNGD----IRAEIEKEWTRIGPGQDVEKWDRLVAI------IK 275
                 K+   +      N D     R    KE+         + +++L  I      I 
Sbjct: 256 GSPHVQKIFDYLPYTSGKNADPVKSARVNEFKEFVDNNNFNSKQLFEKLSTIYGFSVPIN 315

Query: 276 HHQAKNSDRK--LKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           + + K +++   +   I+EI+    YPRLDI+VSK +NHLLKSPFC+H  TG++C
Sbjct: 316 YFKKKEANQNPVIPSYIKEIVFHFTYPRLDINVSKEINHLLKSPFCIHNGTGRVC 370


>gi|308810751|ref|XP_003082684.1| DNA primase small subunit family (ISS) [Ostreococcus tauri]
 gi|116061153|emb|CAL56541.1| DNA primase small subunit family (ISS) [Ostreococcus tauri]
          Length = 452

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 128/332 (38%), Positives = 188/332 (56%), Gaps = 23/332 (6%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDNFRK--------REFSFTLN-----GDIYARYISYNSPN 63
           YY+  +P     +WL +GN +   K        REF F L+     G+I+ RY  +    
Sbjct: 55  YYRNFYPAEALFKWLSHGNDERHAKADKTYAGKREFCFVLDKENGDGEIFCRYQCFEDAG 114

Query: 64  ELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKM-KELVFDIDMTDYDDVRNCCSGA 122
              +++  + P +I+ G + +  P    +HSV    + +ELVFDIDMTDYDDVR CC  A
Sbjct: 115 RFAREVRSKNPARIEFGPVMNAKPAH--RHSVKLHSVERELVFDIDMTDYDDVRTCCKDA 172

Query: 123 DICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCL 182
            IC KCW  M+IA KILD  LR DF F+ LLWV+SGRRG+HCWV DE A  L    R+ +
Sbjct: 173 QICGKCWPLMTIAIKILDAGLRRDFGFKHLLWVYSGRRGVHCWVSDERARKLSDEARAAV 232

Query: 183 AEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQF--EKLLEEQELLSTKERQTKVLG 240
           AEY +V+      +   + + +HP +KRA   +  ++  E  L EQ +L    +  +VL 
Sbjct: 233 AEYFAVVKGQGKSRRVYSINPMHPSVKRAYDDVLKKYWIETYLPEQRILENNAKLDQVLD 292

Query: 241 LVSNGDIRAEIEKEWTRIGPGQDVEKW----DRLVAIIKHHQAKNSDRKLKYAIEEILLE 296
           L+ + +++ E+  E+        VE+W    +R++   +  Q    +  L +A+E+I+  
Sbjct: 293 LLEDQELKDELVDEFNG-SKMSSVERWRVIEERVMQARQPKQGVKRNYTLDFALEKIIFW 351

Query: 297 LAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
             YPR+DI VSK +NHLLK PFCVHPKTG++C
Sbjct: 352 HIYPRVDIEVSKHMNHLLKGPFCVHPKTGRVC 383


>gi|425781234|gb|EKV19210.1| DNA primase [Penicillium digitatum PHI26]
 gi|425783412|gb|EKV21265.1| DNA primase [Penicillium digitatum Pd1]
          Length = 505

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 122/326 (37%), Positives = 195/326 (59%), Gaps = 9/326 (2%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           ++++  +Y+R+FP+    +WL +G     +F  REF+ TL  D Y RY SY + +  +KD
Sbjct: 73  SDIMLAFYQRLFPFRYLFQWLNHGIVPTKDFGNREFALTLQNDAYLRYQSYPTADLFRKD 132

Query: 69  LIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++K  P + ++G +Y   P+D   L+     P  KELVFDID+TDYDD+R CC   +IC 
Sbjct: 133 ILKMNPSRFEIGPVYSTNPRDRKTLRGGQMKPVHKELVFDIDLTDYDDIRTCCVNVNICA 192

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW +++++ K++DTALREDF F+ +LWV+SGRRG H WVCD  A  L    R  +A Y+
Sbjct: 193 KCWSFVTMSIKVIDTALREDFGFEHILWVYSGRRGAHAWVCDPRARHLPDDRRRAIAGYL 252

Query: 187 SVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLVS 243
            ++   +   KKV +    LHPH+ R+  +++  F +  L +Q+   + E+  ++L L+ 
Sbjct: 253 EMVRGGSQSGKKVNIKR-PLHPHIVRSLELLKHDFARTTLGDQDTFESAEQAERLLSLLP 311

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN-SDRKLKYAIEEILLELAYPRL 302
           +  +   + ++W          KW  + ++ K  ++   +   L+ A ++I+LE  YPRL
Sbjct: 312 DKLLNESLRRKWESSPNRASTSKWADIDSLAKTGKSSTLNPATLRDAKQDIVLEYTYPRL 371

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           D  VSK + HLLKSPF +HP TG+IC
Sbjct: 372 DAEVSKKMIHLLKSPFVIHPGTGRIC 397


>gi|354543261|emb|CCE39979.1| hypothetical protein CPAR2_100170 [Candida parapsilosis]
          Length = 426

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 188/336 (55%), Gaps = 23/336 (6%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + FYY+R+ P+     W  +      +F  REF++      Y RY SY+   E KK +I 
Sbjct: 1   MEFYYQRLLPFKHIFTWTSHSPKPTKDFTMREFAYEYRSTAYKRYNSYSDLEEFKKAVIS 60

Query: 72  RCPQKIDLGAIYDICPKD--HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GA+Y + PK+  +L      P  KELVFDID+TDYD++R CC G DIC KCW
Sbjct: 61  ANPTRFEIGAVYKVAPKERYNLPKQALKPVSKELVFDIDLTDYDEIRTCCQGTDICCKCW 120

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           +++ +   I++  LR+DF FQ L+WVFSGRRG HCWV D+ A  LD   R  + EY+ VL
Sbjct: 121 KFIQVGSTIIEDCLRQDFGFQHLVWVFSGRRGAHCWVSDKRARELDENSRRSIVEYLDVL 180

Query: 190 TANPVK--KVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLST---KERQTK------ 237
                K  K        HPH++R+   ++ +F E +LE+Q+   T    E  +K      
Sbjct: 181 GGKHAKGSKGLHVRKPFHPHVERSFESMKRRFIEIILEDQDPWYTDPNTESDSKNWKQVE 240

Query: 238 -VLGLVSNGDIRAEIEKEWT---RIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEE 292
            +L  + N +++AE+ K+W    ++   +D  KW+ L  I       N     L  A +E
Sbjct: 241 ELLSFMPNKELQAELRKKWQGERKVSTSKD--KWEDLNTIAAKLFKTNIQVALLSDAKKE 298

Query: 293 ILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +++   YPRLDI VS+ + HLLKSPFCVHP TG +C
Sbjct: 299 VIIYYLYPRLDIEVSRQIIHLLKSPFCVHPGTGNVC 334


>gi|260941426|ref|XP_002614879.1| hypothetical protein CLUG_04894 [Clavispora lusitaniae ATCC 42720]
 gi|238851302|gb|EEQ40766.1| hypothetical protein CLUG_04894 [Clavispora lusitaniae ATCC 42720]
          Length = 455

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 129/341 (37%), Positives = 192/341 (56%), Gaps = 25/341 (7%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSPNELK 66
           S  +ML FYY R+ P+    +WL +      +F  REF++      Y RY SY S  E K
Sbjct: 20  SSADML-FYYDRLLPFKSIFQWLSHSPKATKDFTMREFAYEFRSGAYQRYNSYASAEEFK 78

Query: 67  KDLIKRCPQKIDLGAIYDICPKD--HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADI 124
           K ++   P + ++GA+Y + PK+  +L  S   P  KELVFDID+TDYD++R CCS  DI
Sbjct: 79  KAVVAANPTRFEVGAVYSVNPKERKNLPKSAMRPLSKELVFDIDLTDYDEIRTCCSKTDI 138

Query: 125 CEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAE 184
           C KCW+++ +A KI+  AL++DF F  ++WVFSGRRG HCW+ DE A  LD   R  + E
Sbjct: 139 CTKCWKFIQVATKIISAALKDDFGFDHMVWVFSGRRGAHCWISDERARHLDESARKAVVE 198

Query: 185 YMSVLTANPVKKVFLTGDVL----HPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTK-- 237
           Y+ VL +   +K+  T   L    HPH++R+  I++  F   +L+EQ    T    ++  
Sbjct: 199 YLDVLGSR-TQKMGRTQLGLRKPYHPHVERSFEILKQHFPAVILDEQNPWCTDGNSSEEE 257

Query: 238 ------VLGLVSNGDIRAEIEKEWT-RIGPGQDVEKWDRLVAIIK---HHQAKNSDRKLK 287
                 +L  +    +R  +  +W  +        KW+ + A+ +    +Q + S  +L 
Sbjct: 258 WNSVEALLAFLPEQSLRNALRTKWKEQKSVSTSRAKWEDINAVAQKVLKNQIQVS--QLT 315

Query: 288 YAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            A +EI+    YPRLD+ VSK + HLLKSPFC+HP TG +C
Sbjct: 316 DAKKEIIFYYMYPRLDLEVSKQMIHLLKSPFCIHPGTGNVC 356


>gi|440793394|gb|ELR14579.1| DNA primase small subunit [Acanthamoeba castellanii str. Neff]
          Length = 437

 Score =  231 bits (590), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 133/331 (40%), Positives = 187/331 (56%), Gaps = 15/331 (4%)

Query: 8   ESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTL---NGDI-YARYISYNSPN 63
           +S  E+ PF     F +   L+  +  N  N   REFS+ +   NG+  Y+RY +Y +  
Sbjct: 19  QSAAEVNPFA---AFDFRFLLKTYWAPNGANLALREFSYEIEIGNGETTYSRYNTYANAK 75

Query: 64  ELKKDLIKRCPQKIDLGAIYDICPKDHLQHSV--FTPKMKELVFDIDMTDYDDVRNCCSG 121
           E +  L + CP++IDLGA++   PKD +  +     P+ KELVFDID++DYDDVR CC G
Sbjct: 76  EFQDGLQRECPRRIDLGAVFSQEPKDKVLVATKRAVPQEKELVFDIDISDYDDVRRCCKG 135

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
           ADIC KCW  M++A K++D  LREDF F+++LWV+SGRRG+HCWVCD  A  L    RS 
Sbjct: 136 ADICGKCWPLMNVAIKVVDRILREDFGFEIILWVYSGRRGVHCWVCDPRARKLSVEERSA 195

Query: 182 LAEYMSVLTANPVKKVFLTGDV---LHPHLKRA-KLIIEDQFEKLLEEQELLSTKERQTK 237
           + EY+SV         F   ++   LHP LK+A   ++ D FE  +    L   ++    
Sbjct: 196 VVEYISVAGQRKQSDKFSFINMPPNLHPTLKQAYDEVLLDYFENTVFPAHLFENEDGWNV 255

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLEL 297
           VL  + N ++R  I K W         E+WD+    +     K   R     + +I+   
Sbjct: 256 VLSTLPN-NLRDTIAKAWQEDEELTPRERWDQFFVAVNQAIEKGHLRN-SNPVYDIVFTC 313

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            YPRLDI VSK ++HLLKSPFCVHP T ++C
Sbjct: 314 TYPRLDIQVSKHLHHLLKSPFCVHPGTHRVC 344


>gi|392896160|ref|NP_001255015.1| Protein PRI-1, isoform a [Caenorhabditis elegans]
 gi|464461|sp|P34471.1|PRI1_CAEEL RecName: Full=DNA primase small subunit
 gi|3877820|emb|CAA80161.1| Protein PRI-1, isoform a [Caenorhabditis elegans]
          Length = 410

 Score =  230 bits (586), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 132/344 (38%), Positives = 196/344 (56%), Gaps = 26/344 (7%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSP 62
           Y+   L + LP YYK  FP  P+ +WL YG  N D F +REF+F L  D++ RY SYN  
Sbjct: 3   YNSIRLPQDLPIYYKNFFPVKPFTKWLRYGQNNGDYFNRREFAFILADDVHIRYRSYNDE 62

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGA 122
           +   K L    P+K+D+GA+Y+  P ++ +H+ +    +ELVFDID+TDYD VRNCC  A
Sbjct: 63  HAFFKALSSTNPEKLDIGAVYNHEPINNKRHTDYQAVERELVFDIDLTDYDPVRNCCKDA 122

Query: 123 DICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCL 182
            +C KCW++M +A KILD  L + FDF+  +WVFSGRRG+HCWV D+ A  L+   RS +
Sbjct: 123 TVCPKCWKFMVLAVKILDFQLEDMFDFKARMWVFSGRRGVHCWVGDKKARMLNNYQRSAI 182

Query: 183 AEYMSVLTAN---PVKKVFLTGDVLHPHLKRA-KLIIEDQ-FEKLLEEQELLSTKERQT- 236
           A  +++   N    V +       + P ++ A  + ++D  FEK++ +Q  L  ++  T 
Sbjct: 183 ATRLNLFKKNGQCEVTEGRAKMTKVPPIVRDAFNVALKDGVFEKMIYDQGWLDKEDFITE 242

Query: 237 -KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN---SDRKLKYAIEE 292
            K +  V   D+R+  E   T        E+W+ +  +      K+    D  L + ++ 
Sbjct: 243 YKFMSEVGRDDLRSLSETYKT------PQERWNMIRGLFDDDYRKSLSPKDGLLDFKMQG 296

Query: 293 --------ILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
                    +L+  YPRLD++VS G NHLLKSPFC+HPKTG + 
Sbjct: 297 RDRNYLLYFVLQRCYPRLDVNVSTGTNHLLKSPFCIHPKTGNVA 340


>gi|403216120|emb|CCK70618.1| hypothetical protein KNAG_0E03610 [Kazachstania naganishii CBS
           8797]
          Length = 411

 Score =  230 bits (586), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 129/330 (39%), Positives = 178/330 (53%), Gaps = 16/330 (4%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLD----NFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           L FYY R +P+ P  RWL  G  D    N   RE +       Y RY+S N+  E  + +
Sbjct: 20  LEFYYSRAYPFAPVFRWLNGGPEDQPTQNVTHRELAMAFRSGAYKRYVSVNTLAEFAETV 79

Query: 70  IKRCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEK 127
            +  P + ++GA+Y   PK  D L  S      KELVFDIDM DYD  R CC GA +C +
Sbjct: 80  RRLNPDRFEVGAVYSRPPKERDSLLKSELVALRKELVFDIDMDDYDSYRTCCQGARVCTR 139

Query: 128 CWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMS 187
           CWR++ +A +++ TALREDF F   +WVFSGRRG HCWV D  A+A+  + R    EY++
Sbjct: 140 CWRFIQLAIEVIGTALREDFGFSTFVWVFSGRRGAHCWVSDPRAMAMTDQQRRNTLEYLN 199

Query: 188 VLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELL--STKERQTKVLGLVSN 244
           V+      K        HP L R+  +++  F   LLE+Q+     T+ R T +L  + +
Sbjct: 200 VVRDRTAAKRLNLVRPYHPLLARSLELLKPHFANLLLEDQDPWRDDTRARAT-LLTALHD 258

Query: 245 GDIRAEIEKEWTRIGPGQDVEKW---DRLVAIIKH-HQAKNSD--RKLKYAIEEILLELA 298
             +   + K+WT        EKW   D   A IK    A+  D   KL    E+I++   
Sbjct: 259 KSLAETLSKQWTEQPGRSSSEKWRDIDTAAASIKFPSTARRQDFHAKLHECKEDIVMATL 318

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           YP+LD+ V+K  +HLLK+PFCVHP TG IC
Sbjct: 319 YPKLDVEVTKLTSHLLKAPFCVHPATGNIC 348


>gi|149238387|ref|XP_001525070.1| hypothetical protein LELG_04102 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451667|gb|EDK45923.1| hypothetical protein LELG_04102 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 447

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/359 (36%), Positives = 198/359 (55%), Gaps = 42/359 (11%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELK 66
           S ++ML FYYKR+ P+     WL +      +F  REF++      Y RY SY+S ++ K
Sbjct: 60  SESDML-FYYKRLLPFKHIFTWLSHSPKITKDFTMREFAYEYRSGAYQRYNSYSSLDDFK 118

Query: 67  KDLIKRCPQKIDLGAIYDICPKD--HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADI 124
           + +I   P + ++GA+Y + PK+  +L       + KELVFDID+TDYDD+R CCSG  I
Sbjct: 119 QQVITANPTRFEIGAVYKVSPKERRNLPKQAMKAQSKELVFDIDLTDYDDIRTCCSGTAI 178

Query: 125 CEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAE 184
           C KCW+++ +  +IL+ ALR DF F+ ++WVFSGRRG HCW+ DE A  LD   R  + E
Sbjct: 179 CTKCWKFIQVGAEILELALRNDFGFEHMVWVFSGRRGAHCWISDERARNLDEGSRRAIVE 238

Query: 185 YMSVLTANPVKKVFLTGDVL------HPHLKRAKLIIEDQF-EKLLEEQELLST------ 231
           Y+ VL           G  L      HPH++R+  I+  +F E +LE+Q+   T      
Sbjct: 239 YLDVLGGKHSGVGSKGGAKLHVKKPMHPHVERSFEILRTRFIEIILEDQDPWMTHGGMKE 298

Query: 232 ------------KERQTKV---LGLVSNGDIRAEIEKEW-TRIGPGQ---DVEKWDRLVA 272
                        +  +KV   L  + N D+R E++K+W T    G+     E W+ +  
Sbjct: 299 EGGIDNSQDDNKSDNWSKVDEFLLFIPNKDLRVELQKKWMTEANLGKISHSREIWEDINT 358

Query: 273 IIKHHQAKNSDRKLKYAIE---EILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +    +   S  ++ Y IE   +I++   YPRLD+ VS+ V HL+K+PFC+HP TG +C
Sbjct: 359 VAS--KVLKSQSQIAYLIEAKKDIIIYYLYPRLDVEVSRQVIHLVKAPFCIHPGTGNVC 415


>gi|355713535|gb|AES04705.1| primase, DNA, polypeptide 1 [Mustela putorius furo]
          Length = 220

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 110/219 (50%), Positives = 148/219 (67%), Gaps = 5/219 (2%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   ETFDPAELPELLKLYYRRLFPYAQYYRWLNYGGVIKNYFQNREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + +EL+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQSELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct: 122 CSSADICSKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIE 216
           RS + EY+S++     VKK     + +HP + ++  II+
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFVSKSINIIK 220


>gi|388500114|gb|AFK38123.1| unknown [Lotus japonicus]
          Length = 347

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 117/259 (45%), Positives = 164/259 (63%), Gaps = 17/259 (6%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGN--------LDNFRKREFSFTLNGDIYARYISYNSPNEL 65
           L  YY ++FP+    RW+ YGN           F +REFSFTL  DIY R+ S+N+  EL
Sbjct: 39  LKLYYGKLFPFTDIFRWMSYGNDGKHPGCDSSYFGRREFSFTLENDIYLRFQSFNNALEL 98

Query: 66  KKDLIKRCPQKIDLGAIYDICP-KDHL----QHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           +  + ++ P KID+G +Y + P K H      + VF P  +EL+FDIDM+DYDDVR CCS
Sbjct: 99  ENSIKEKSPFKIDIGPVYTVDPAKRHAYAQGDNKVFAPVERELIFDIDMSDYDDVRYCCS 158

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           GAD+C  CW  M+IA K++DTALR+DF F+ +LWV+SGRRG+HCWVCD+ A  L    R+
Sbjct: 159 GADVCLNCWPLMTIAIKVIDTALRDDFGFKHILWVYSGRRGVHCWVCDQKARRLTNEQRA 218

Query: 181 CLAEYMSVLTANPV--KKVFLTGDVLHPHLKRA-KLIIEDQFEK-LLEEQELLSTKERQT 236
            +A+Y  V   N    KK+ LTG  LHP L  +   +++  FEK LL  Q LL+T+ER  
Sbjct: 219 AIADYFRVYKGNENTHKKISLTGAALHPFLATSYTSVLKHFFEKNLLTSQNLLATEERYE 278

Query: 237 KVLGLVSNGDIRAEIEKEW 255
           K+L ++ +  I +++  +W
Sbjct: 279 KILDMIPDESIASKLRGKW 297


>gi|254582202|ref|XP_002497086.1| ZYRO0D15114p [Zygosaccharomyces rouxii]
 gi|238939978|emb|CAR28153.1| ZYRO0D15114p [Zygosaccharomyces rouxii]
          Length = 417

 Score =  227 bits (578), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 131/339 (38%), Positives = 189/339 (55%), Gaps = 15/339 (4%)

Query: 2   ADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISY 59
           A K  P S ++M  +YY+ I+P+     WL +      +   RE +       Y RY SY
Sbjct: 12  AAKPQPPSSSDMQ-YYYQFIYPFKQIFNWLNHSPKPGKDMINRELAMAFRSGAYKRYNSY 70

Query: 60  NSPNELKKDLIKRCPQKIDLGAIYDICP--KDHLQHSVFTPKMKELVFDIDMTDYDDVRN 117
            S  E K  ++K  P + ++GAIY+  P  +D L  S   P  KELVFDIDM DYD  R 
Sbjct: 71  RSVQEFKSQVVKANPDRFEIGAIYNKPPQERDSLLKSEMIPLEKELVFDIDMDDYDTFRT 130

Query: 118 CCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGR 177
           CCSGA +C KCW+++S+A  I++TAL EDF F+  LWVFSGRRG HCWV D+ A AL+  
Sbjct: 131 CCSGAQVCGKCWKFISLAMTIMNTALIEDFGFENFLWVFSGRRGAHCWVSDKRARALNNL 190

Query: 178 GRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELL--STKER 234
            RS + +YM+V+      K        HPH+ R+   ++  F   +LEEQ+         
Sbjct: 191 QRSNIIDYMNVVKDRTANKRLALLRPYHPHIARSLEQLKPHFTAIILEEQDPWRDDAHAM 250

Query: 235 QTKVLGLVSNGDIRAEIEKEWTRIGPGQDV-EKWDRLVAI----IKHHQAKNSDRKLKYA 289
           QT + GL     I A + + W +  PG+   EKW  + AI    +K  + +    +L+  
Sbjct: 251 QTLLPGLHDRNLIEA-LSRYW-KAHPGRSSKEKWSDIDAIAAKELKISRKQEFINRLREC 308

Query: 290 IEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            E++++   YP+LD+ V+K  +HLLK+PFC+HP TG +C
Sbjct: 309 KEDLVISTLYPKLDVEVTKQTHHLLKAPFCIHPGTGNVC 347


>gi|261195843|ref|XP_002624325.1| DNA primase small subunit [Ajellomyces dermatitidis SLH14081]
 gi|239587458|gb|EEQ70101.1| DNA primase small subunit [Ajellomyces dermatitidis SLH14081]
 gi|239614410|gb|EEQ91397.1| DNA primase small subunit [Ajellomyces dermatitidis ER-3]
          Length = 539

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 125/328 (38%), Positives = 185/328 (56%), Gaps = 27/328 (8%)

Query: 27  YLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYD 84
           + +WL +G     +F  REFSFTL  +   RY S+ +   L+K+++   P + ++G IY 
Sbjct: 89  FFQWLNHGVKPSPDFGNREFSFTLQNNAVLRYQSFPTAELLRKEILHLKPTRFEIGPIYS 148

Query: 85  ICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDT 141
             P+D     + S F P  KELVFDID+TDYDD+R CC+ A+IC+KCW + ++A K++D 
Sbjct: 149 TNPRDRKSLRKASRFRPVSKELVFDIDLTDYDDIRTCCTKANICQKCWSFATMAIKVVDA 208

Query: 142 ALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL--TANPVKKVFL 199
           ALREDF F+ +LWV+SGRRG H WVCD  A  L    R  +  Y+  +   +   KKV L
Sbjct: 209 ALREDFGFEHILWVYSGRRGAHAWVCDRRARDLPDDRRKAITGYLEAIRGGSQSGKKVNL 268

Query: 200 TGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRI 258
               LHPH+ R+  I++  F   +L EQ+  S  E+  ++L L+ +  +   + ++W   
Sbjct: 269 K-RPLHPHIARSLEILKPYFASTILVEQDTFSKPEQAEQLLSLLPDKPLADALRRKWDSA 327

Query: 259 GPGQDVEKWDRLVAIIKHHQ-------------AKNSDRKLKY-----AIEEILLELAYP 300
                V KW+ + A+ K  +             A +S+R +       A ++I LE  YP
Sbjct: 328 PDRSSVNKWNDIDALAKSTKSRAEQQDGKGRGGASSSNRPIDTKALLEAKQDIALEYTYP 387

Query: 301 RLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           RLD  V K + HLLKSPF VHP TG++C
Sbjct: 388 RLDAEVGKKLIHLLKSPFVVHPGTGRVC 415


>gi|402886509|ref|XP_003906671.1| PREDICTED: DNA primase small subunit [Papio anubis]
          Length = 379

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 134/328 (40%), Positives = 185/328 (56%), Gaps = 43/328 (13%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSP 62
           + +DP  L E+L  YY+R+FPY  Y RWL YG  D                  +    SP
Sbjct: 2   ETFDPTELPELLKLYYRRLFPYSQYYRWLNYGGGDG--------------GEEWGRERSP 47

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGA 122
           N+            + LGA              F  + KELVFDIDMTDYDDVR CCS A
Sbjct: 48  NQ---------HNTVKLGA--------------FQAQEKELVFDIDMTDYDDVRRCCSSA 84

Query: 123 DICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCL 182
           DIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    RS +
Sbjct: 85  DICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGI 144

Query: 183 AEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLG 240
            EY+S++     VKK     + +HP ++++  II+  FE+  L  Q++L  KE   K+L 
Sbjct: 145 VEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILKNKESWDKILA 204

Query: 241 LVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILLELAY 299
           LV    I  E+++ + +      +++W+ L  +    Q    + K    +E EI+L+  +
Sbjct: 205 LVPEI-IHDELQQGFQK--SHNSLQRWEHLKKVASRCQNNIKNDKYGPWLEWEIMLQYCF 261

Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           PRLDI+VSKG+NHLLKSPF VHPKTG+I
Sbjct: 262 PRLDINVSKGINHLLKSPFSVHPKTGRI 289


>gi|68076689|ref|XP_680264.1| small subunit DNA primase [Plasmodium berghei strain ANKA]
 gi|56501173|emb|CAH99758.1| small subunit DNA primase, putative [Plasmodium berghei]
          Length = 368

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 138/351 (39%), Positives = 190/351 (54%), Gaps = 40/351 (11%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLDN-----------FRKREFSFTLNG------DIYARY 56
           L FYY+ + P      WL Y N DN           F KREFSFT         +IY R+
Sbjct: 19  LIFYYRNLCPINDLCNWLNYKN-DNGKYTRLNDPNFFSKREFSFTCKKCDQGKEEIYMRW 77

Query: 57  ISYNSPNELKKDLIKR-CPQKIDLGAIYDICPKDHLQHS-VFTPKMKELVFDIDMTDYDD 114
           +S+NS NE K  L+    P K D+GA+Y+       Q    F P  KEL+FDIDM DYDD
Sbjct: 78  LSFNSANEFKDKLLSNFVPIKFDIGAVYNYPVSQKCQKGDSFRPIQKELIFDIDMNDYDD 137

Query: 115 VRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALAL 174
           +R CC+   +C+ CW++++IA  +LDT+LREDF FQ +LWV+SGRRGIHCWVCDE+    
Sbjct: 138 IRTCCADKKVCKLCWKFLTIAIVLLDTSLREDFAFQNILWVYSGRRGIHCWVCDESCRHY 197

Query: 175 DGRGRSCLAEYMSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTK 232
               R+ LA+Y+++L+ +    KKV + G   +P L+RA  I    F+ LLEEQ+     
Sbjct: 198 TTDARAALADYLNILSGSDTKKKKVSIWGKEKYPMLERAFDICYKYFDVLLEEQDFFKKG 257

Query: 233 ERQTKVL------GLVSNGD----IRAEIEKEWTRIGPGQDVEKWDRLVAI------IKH 276
               + +          N D     R    KE+         + +++L  I      I +
Sbjct: 258 SPHVQKIFDYLPYTSTKNADPMKSTRINEFKEFVDNNNFNSKQLFEKLSTIYGFSIPINY 317

Query: 277 HQAK--NSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTG 325
            + K  N +  +   I+EI+    YPRLDI+VSK +NHLLKSPFC+H  TG
Sbjct: 318 LKKKEENQNPVIPSYIKEIVFHFTYPRLDINVSKEINHLLKSPFCIHNGTG 368


>gi|317036075|ref|XP_001397568.2| DNA primase small subunit [Aspergillus niger CBS 513.88]
          Length = 483

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 118/323 (36%), Positives = 180/323 (55%), Gaps = 34/323 (10%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           T+ +  +Y+R+FP+    +WL +G +   +F  REF+ TL  D Y RY SY + +  +KD
Sbjct: 83  TDTMLAFYQRLFPFRYLFQWLNHGIVPSPDFGNREFALTLQNDAYLRYQSYATADLFRKD 142

Query: 69  LIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           ++K  P + ++G +Y+  P+D   L+     P  KELVFDID+TDYDD+R+CC  A+IC 
Sbjct: 143 ILKMNPSRFEIGPVYNTNPRDRKTLRGGQMKPIAKELVFDIDLTDYDDIRSCCEKANICS 202

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW ++++A K++DTALREDF F+ +LWV+SGRRG H WVCD  A  L    R  +A Y+
Sbjct: 203 KCWAFVTMAMKVVDTALREDFGFEHILWVYSGRRGAHAWVCDPRARNLPDDRRRAIAGYL 262

Query: 187 SVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGD 246
            V+               +   KR                  + + E+  ++L L+ +  
Sbjct: 263 DVIRGG------------NSSGKRN-----------------IWSSEQAQRLLSLLPDKG 293

Query: 247 IRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN-SDRKLKYAIEEILLELAYPRLDIH 305
           +   + K W          KW  + A+ K  ++   +   L+ A ++I+LE  YPRLD  
Sbjct: 294 LNESLRKRWESSPDRSSANKWADIDALAKTGKSSTLNPTTLRDAKQDIVLEYTYPRLDSE 353

Query: 306 VSKGVNHLLKSPFCVHPKTGKIC 328
           VSK + HLLKSPF +HP TG++C
Sbjct: 354 VSKKMIHLLKSPFVIHPGTGRVC 376


>gi|156100553|ref|XP_001616004.1| DNA primase small subunit [Plasmodium vivax Sal-1]
 gi|148804878|gb|EDL46277.1| DNA primase small subunit, putative [Plasmodium vivax]
          Length = 469

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 136/356 (38%), Positives = 200/356 (56%), Gaps = 43/356 (12%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLDN------------FRKREFSFTLNGD------IYAR 55
           L FYY+ + P      WL Y N DN            F KREFSFT   +      IY R
Sbjct: 17  LIFYYRNLCPINDLCNWLNYKN-DNKGKYTRLNDPHFFAKREFSFTCKKNDQGKEEIYMR 75

Query: 56  YISYNSPNELKKDLIKR-CPQKIDLGAIYD--ICPKDHLQHSVFTPKMKELVFDIDMTDY 112
           ++S+N+  E K  L+    P K D+GA+Y+  +  KD  +  +F P  KEL+FDIDM DY
Sbjct: 76  WLSFNNSEEFKDKLLSNFVPIKFDIGAVYNYPVYQKDQ-KGDIFHPVQKELIFDIDMNDY 134

Query: 113 DDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAAL 172
           DD+R CC+   +C+ CW++++IA  +LDTALREDF  Q +LWV+SGRRGIHCWVCDE+  
Sbjct: 135 DDIRTCCNDKKVCKLCWKFLTIAIVLLDTALREDFALQNILWVYSGRRGIHCWVCDESCR 194

Query: 173 ALDGRGRSCLAEYMSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLS 230
                 R+ LA+Y+++L+ + +  KKV + G   +P ++RA  I    FE L+EEQ+   
Sbjct: 195 HYTTDARAALADYLNILSGSDMKKKKVSIWGKEKYPMIERAFEICYKYFEILMEEQDFFK 254

Query: 231 TKERQ-TKVLGLVSNGDIR-------AEIE--KEWTRIGPGQDVEKWDRLVAII------ 274
                  K++  +     +       A+I   KE+         E +++L +I       
Sbjct: 255 KGSPHVNKIIDYLPYATAKNVDPLKSAKINEFKEFIDNNNFNSKELFEKLSSIYGFLTPG 314

Query: 275 KHHQAKNSDRK--LKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            + + K+S+    +   I+E++    YPRLDI+VSK +NHLLKSPFC+H  TG++C
Sbjct: 315 NYFKKKDSNANIIIPSYIKELVFHFTYPRLDINVSKEINHLLKSPFCIHNGTGRVC 370


>gi|341877685|gb|EGT33620.1| hypothetical protein CAEBREN_07229 [Caenorhabditis brenneri]
          Length = 411

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/342 (37%), Positives = 189/342 (55%), Gaps = 22/342 (6%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSP 62
           Y+   L + L  YYK  FP  P+++WL YG    D F +REF+F L  D++ RY SY+  
Sbjct: 3   YNSHRLPQDLSIYYKNFFPVKPFVKWLRYGLGFGDYFNRREFAFILADDVHIRYRSYHDE 62

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGA 122
           +   K L    P+K+D+GA+Y+  P ++ +H+ +    +ELVFDID+TDYD VRNCC  A
Sbjct: 63  HTFFKALTSTNPEKLDIGAVYNHEPVNNKRHTDYQAVERELVFDIDLTDYDPVRNCCKDA 122

Query: 123 DICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCL 182
            +C KCW++M +A KILD  L + F F+  +WVFSGRRG+HCWV D+ A  L+   RS +
Sbjct: 123 TVCPKCWKFMVLAVKILDFQLEDMFGFKARMWVFSGRRGVHCWVGDKKARMLNNSQRSAI 182

Query: 183 AEYMSVLTANPVKKVF--LTGDVLHPHLKRAKLIIEDQ---FEKLLEEQELLSTKERQTK 237
           A  +++   N   +V          P + R    +  Q   FE+++ EQ  L   +  T 
Sbjct: 183 ATRLNLFKKNGQCEVTEGKQKQTRVPPIVRDAFNVAMQDGIFEEMVYEQGWLDNNDFLTD 242

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-----------L 286
              L  +  +R ++ +   +    Q  +KW  +  I      KN D K            
Sbjct: 243 YPYL--SDSLRKDLIELLDKCETSQ--QKWHIIRGIFDEEYRKNLDEKDAATGLNAQMRD 298

Query: 287 KYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           ++A+   +L+  YPRLD++VS G NHLLKSPFC+HPKTG + 
Sbjct: 299 RHALLYFVLQRCYPRLDVNVSTGTNHLLKSPFCIHPKTGNVA 340


>gi|124809299|ref|XP_001348540.1| small subunit DNA primase [Plasmodium falciparum 3D7]
 gi|3183127|sp|Q25998.1|PRI1_PLAFK RecName: Full=DNA primase small subunit; AltName: Full=DNA primase
           53 kDa subunit
 gi|74876424|sp|Q7KQM1.1|PRI1_PLAF7 RecName: Full=DNA primase small subunit; AltName: Full=DNA primase
           53 kDa subunit
 gi|23497436|gb|AAN36979.1|AE014822_14 small subunit DNA primase [Plasmodium falciparum 3D7]
 gi|1430925|emb|CAA67626.1| primase [Plasmodium falciparum]
          Length = 452

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 132/357 (36%), Positives = 199/357 (55%), Gaps = 45/357 (12%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGN--------LDN---FRKREFSFTLNG------DIYARY 56
           L FYY+ + P      WL Y N        L++   F KREFSFT         +IY R+
Sbjct: 19  LIFYYRSLCPINDLYNWLNYKNDIKGKYTKLNDPHFFSKREFSFTCKKSDQGKEEIYIRW 78

Query: 57  ISYNSPNELKKDLIKR-CPQKIDLGAIYD--ICPKDHLQHSVFTPKMKELVFDIDMTDYD 113
           +S+++P E K  L+    P K D+GAIY+  +  KD  +  +F P  KEL+FDIDM DYD
Sbjct: 79  LSFSNPEEFKNKLLSDLVPIKFDIGAIYNFPVSQKDQ-KGDIFLPVQKELIFDIDMNDYD 137

Query: 114 DVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALA 173
           D+R CC+   +C+ CW+++++A  +LDTALREDF F+ +LWV+SGRRGIHCWV DE+   
Sbjct: 138 DIRTCCTDKKVCKLCWKFLTVAIVLLDTALREDFSFEHILWVYSGRRGIHCWVADESCRY 197

Query: 174 LDGRGRSCLAEYMSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLST 231
                R+ LA+Y+++L+ +    KKV + G   +P  +RA  I    F+ L+EEQ+    
Sbjct: 198 YTTDARAALADYLNILSGSDTKKKKVSIWGKDKYPMFERAFDICYKYFDVLMEEQDFF-- 255

Query: 232 KERQTKVLGLV-----SNGDIRAEIE-------KEWTRIGPGQDVEKWDRLVAIIKHHQA 279
           K+    V  L+     ++G +   ++       KE+         E +++  +I      
Sbjct: 256 KKGSPHVQKLIDYLPYASGKVTDPLKAMKLNELKEYINNNNFNSREIFEKFSSIYNFLTP 315

Query: 280 KNSDRKLKYA--------IEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            N  ++   +        ++EI+    YPRLDI+VSK +NHLLKSPFC+H  TG++C
Sbjct: 316 SNYFKRKNVSGNINMPSFVKEIVFHFTYPRLDINVSKEINHLLKSPFCIHNSTGRVC 372


>gi|50304201|ref|XP_452050.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641182|emb|CAH02443.1| KLLA0B11682p [Kluyveromyces lactis]
          Length = 436

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 184/337 (54%), Gaps = 15/337 (4%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSP 62
           Y P S    + +YY+ ++P+    +WL +      +   REF+       Y RY S+NS 
Sbjct: 32  YGPSSSD--MQYYYQHLYPFKQIFQWLNHSPKPGRDIINREFAMAFRSGAYKRYNSFNSV 89

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
            E K  + K  P + ++GA+Y+  P+  D L  +   P  KELVFDIDM DYD  R CCS
Sbjct: 90  QEFKVQIQKANPDRFEIGAVYNKPPRERDSLLKTEMKPMEKELVFDIDMDDYDSYRTCCS 149

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           GA +C KCW ++ +A K+++++L  DF F   +WVFSGRRG HCW+ D+ A  +    R 
Sbjct: 150 GAQVCPKCWHFIKLAMKVINSSLENDFGFDEFIWVFSGRRGAHCWISDKRARVMTDSHRK 209

Query: 181 CLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVL 239
            + +YM+V+    ++K       LHPHL R+  I++  F E +L EQ+     E   K L
Sbjct: 210 NMLDYMNVVRDRNIEKRLNLVRPLHPHLSRSLEILKPHFVEIILREQDTWRDDELAIKSL 269

Query: 240 GLV-SNGDIRAEIEKEWTRIGPGQDVEKW-------DRLVAIIKHHQAKNSDRKLKYAIE 291
                +  +  +++K WT        EKW        +L++     +  +  ++L+ + E
Sbjct: 270 ATSCHDKQLSEQLKKLWTNKPGRSSEEKWKDMDVIASQLISSFPKQRQHDYLQRLRESKE 329

Query: 292 EILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +I+++  YP+LD+ V+K   HLLK+PFC+HP TG +C
Sbjct: 330 DIIIQTLYPKLDVEVTKQTIHLLKAPFCIHPSTGNVC 366


>gi|50293547|ref|XP_449185.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528498|emb|CAG62155.1| unnamed protein product [Candida glabrata]
          Length = 410

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 122/341 (35%), Positives = 184/341 (53%), Gaps = 13/341 (3%)

Query: 1   MADKYDPESLTEM-LPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYI 57
           M +   P   + M + +YY+ ++P+    +W+ +      +   REF+       Y RY 
Sbjct: 1   MTETIKPNGPSSMDMQYYYQYLYPFKQIFQWVNHSQKPSRDIINREFAMAFRSGAYKRYN 60

Query: 58  SYNSPNELKKDLIKRCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDV 115
           SY    E K+ + K  P + ++GAIY+  PK  D L  S   P  KELVFDIDM DYD  
Sbjct: 61  SYGDVQEFKEAIEKSNPDRFEIGAIYNKPPKERDSLLKSEMVPLEKELVFDIDMDDYDTF 120

Query: 116 RNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALD 175
           R CCSGA +C KCWR++S+A +I++ AL+EDF +   +WVFSGRRG HCWV D+ A AL+
Sbjct: 121 RTCCSGAQVCYKCWRFISLAMEIINVALKEDFGYNDFVWVFSGRRGAHCWVSDKRARALN 180

Query: 176 GRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKER 234
              R  + +Y++V+      K        HPHL R+  I++  F + +LEEQ+     + 
Sbjct: 181 DIQRRNVLDYLNVVRDRNYDKPLSLKRPYHPHLSRSLQILKGHFVDIILEEQDPWRDDQH 240

Query: 235 QTK-VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRL------VAIIKHHQAKNSDRKLK 287
             K +L   +   +   + K WT         KW  +      + I    Q +  + +L+
Sbjct: 241 AIKTLLPAFTEKPVIEALRKYWTENPNRSSKAKWGDIDTIASNLNITNKRQKEIMNNRLR 300

Query: 288 YAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            A E+++L   YP+LD+ V+K   HLLK+PFC+HP TG +C
Sbjct: 301 EAKEDLVLTTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVC 341


>gi|380793317|gb|AFE68534.1| DNA primase small subunit, partial [Macaca mulatta]
          Length = 210

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 107/209 (51%), Positives = 142/209 (67%), Gaps = 5/209 (2%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   ETFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct: 122 CSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHP 206
           RS + EY+S++     VKK     + +HP
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHP 210


>gi|221059683|ref|XP_002260487.1| small subunit DNA primase [Plasmodium knowlesi strain H]
 gi|193810560|emb|CAQ41754.1| small subunit DNA primase, putative [Plasmodium knowlesi strain H]
          Length = 450

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 132/355 (37%), Positives = 199/355 (56%), Gaps = 41/355 (11%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGN--------LDN---FRKREFSFTLN------GDIYARY 56
           L FYY+ + P      WL Y N        L++   F KREFSFT         +IY R+
Sbjct: 17  LIFYYRNLCPINDLCNWLNYKNDIKGKYTKLNDPHFFAKREFSFTCKKNDQGKDEIYLRW 76

Query: 57  ISYNSPNELKKDLIKR-CPQKIDLGAIYD--ICPKDHLQHSVFTPKMKELVFDIDMTDYD 113
           +S+N+  E K+ L+    P K D+GA+Y+  +  KD  +  +F P  KEL+FDIDM DYD
Sbjct: 77  LSFNNSEEFKEKLLSNLVPIKFDIGAVYNYPVYQKDQ-KGDIFHPVQKELIFDIDMNDYD 135

Query: 114 DVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALA 173
           D+R CC+   +C+ CW++++IA  +LDTALREDF  Q +LWV+SGRRGIHCWVCDE+   
Sbjct: 136 DIRTCCNDKKVCKLCWKFLTIAIVLLDTALREDFALQNILWVYSGRRGIHCWVCDESCRY 195

Query: 174 LDGRGRSCLAEYMSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLST 231
                R+ LA+Y+++L+      KKV + G   +P ++RA  I    F+ L+EEQ+    
Sbjct: 196 YTTDARAALADYLNILSGPDTKKKKVSIWGKEKYPMIERAFEICYKYFDILMEEQDFFKK 255

Query: 232 KERQTK----VLGLVSNGDI------RAEIEKEWTRIGPGQDVEKWDRLVAII------K 275
                      L  V+  ++      R    K++         + +++L +I        
Sbjct: 256 GSPHVNKIMDYLPYVTAKNVDPVKSARLSEFKQFIDRNNFNSKDLFEKLSSIYSFPTPSN 315

Query: 276 HHQAKNSDRKLKYA--IEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           + + K+++R +     I+E++    YPRLDI+VSK +NHLLKSPFC+H  TG++C
Sbjct: 316 YFKKKDANRNVTVPPFIKELVFHFTYPRLDINVSKEINHLLKSPFCIHNGTGRVC 370


>gi|444313503|ref|XP_004177409.1| hypothetical protein TBLA_0A00900 [Tetrapisispora blattae CBS 6284]
 gi|387510448|emb|CCH57890.1| hypothetical protein TBLA_0A00900 [Tetrapisispora blattae CBS 6284]
          Length = 424

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 115/328 (35%), Positives = 181/328 (55%), Gaps = 13/328 (3%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + +YY+ +FP+     WL +G+    +   REF+       Y RY S++S  E K  + +
Sbjct: 33  MQYYYQFLFPFNTIFSWLNHGDKPGRDIENREFAMAFRSGAYKRYNSFSSVQEFKTQIER 92

Query: 72  RCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GAIY+  PK  D + +S   P  KELVFDIDM DYD  R CC+GA +C++CW
Sbjct: 93  ANPDRFEIGAIYNKPPKNRDTILNSDMKPLEKELVFDIDMDDYDTYRTCCNGAQVCDRCW 152

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           R++ +A  +++  L+EDF F   +WVFSGRRG HCWV D+ A  L+ + R  + +Y++V+
Sbjct: 153 RFIKLAMIVMEVTLKEDFGFNSFIWVFSGRRGAHCWVSDKRARLLNDQQRRSILDYVNVV 212

Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQ-TKVLGLVSNGDI 247
                +K  L     HPHL R+  +++  F E +LEEQ            +L  + +  +
Sbjct: 213 KDRSAEKRLLLRRPYHPHLLRSLNLLKPYFVEIILEEQNCWEDDTHAFETLLPCLHDKQL 272

Query: 248 RAEIEKEWTRIGPGQDVEKWD-------RLVAIIKHHQAKNSDRKLKYAIEEILLELAYP 300
              + K W         +KW        +L    K  + ++   +++ + E+I+L+  YP
Sbjct: 273 IESLTKYWKENPNRSSKDKWSDIDSITRKLTTSFKSARKQDFINRVRDSKEDIILQTLYP 332

Query: 301 RLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +LDI V+K   HLLKSPFC+HP TG +C
Sbjct: 333 KLDIEVTKQTIHLLKSPFCIHPATGNVC 360


>gi|268573440|ref|XP_002641697.1| C. briggsae CBR-PRI-1 protein [Caenorhabditis briggsae]
          Length = 411

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 122/343 (35%), Positives = 192/343 (55%), Gaps = 24/343 (6%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSP 62
           Y+   LT+ LP YYK  FP  P+++WL YG    +   +REF+F L  D++ RY SY+  
Sbjct: 3   YNSIRLTQDLPVYYKNFFPVKPFIKWLRYGLGFGEYLNRREFAFILADDVHIRYRSYHDE 62

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGA 122
               K L    P+K+D+GA+Y+  P ++ +H+ +    +ELVFDID+TDYD++RNCC  A
Sbjct: 63  LSFFKALTSTNPEKLDIGAVYNHEPINNKRHTDYQAVERELVFDIDLTDYDNIRNCCKEA 122

Query: 123 DICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCL 182
            +C KCW++M +A KILD  L + F F   +WVFSGRRG+HCWV D+ A  L    RS +
Sbjct: 123 TVCPKCWKFMVLAVKILDFLLDDMFGFNARMWVFSGRRGVHCWVGDKKARMLTNNHRSAV 182

Query: 183 AEYMSVLTAN-----------PVKKVFLTGDVLHPHLKR---AKLIIEDQF---EKLLEE 225
           A  +++   N             +   +  D  +  +K     ++++E  +   +  L++
Sbjct: 183 ATRLNLFKKNGQFEATEGKAKNTRVPPIVRDAYNIAMKDGTFGEMVLEQGWLENDDFLKD 242

Query: 226 QELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK 285
           + LL+ K ++     L+ N +     EK W  +    D E + R +      +  +   +
Sbjct: 243 ELLLTDKGKKE----LIENLEGYDTPEKRWHALRAMFD-EDYRRKLGSENEFKDYHPQGR 297

Query: 286 LKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            ++A+   +L+  YPRLD++VS G NHLLKSPFC+HPKTG + 
Sbjct: 298 DRFALHTFVLQKCYPRLDVNVSTGTNHLLKSPFCIHPKTGNVA 340


>gi|66357134|ref|XP_625745.1| DNA primase small subunit [Cryptosporidium parvum Iowa II]
 gi|46226731|gb|EAK87710.1| DNA primase small subunit [Cryptosporidium parvum Iowa II]
          Length = 402

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 121/315 (38%), Positives = 184/315 (58%), Gaps = 26/315 (8%)

Query: 36  LDNFRK------REFSFTLNGDI-----YARYISYNSPNELKKDLIKRCPQKIDLGAIYD 84
           LDN R+      REFS T+  +I     Y R+  + + ++LK++++ R P K D+GAIY+
Sbjct: 11  LDNSRQNNLIQNREFSMTIKSEIDQDEIYLRWQHFKTIDQLKQEIVARTPHKFDIGAIYN 70

Query: 85  I-CPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTAL 143
           I   +  +    F P  +ELVFDIDM DYDD+R CC    ICEKCW Y+++A +++DT+L
Sbjct: 71  IPISEKEISPLGFKPVQRELVFDIDMNDYDDIRTCCQEKTICEKCWLYVTVAIRLIDTSL 130

Query: 144 REDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPV--KKVFL-- 199
           R+DF F+ +LW++SGRRG+HCWVCD  A  L    R+ + +Y++++T N    KKV L  
Sbjct: 131 RQDFGFKHILWLYSGRRGVHCWVCDTKARLLPSEARTAIIDYLTLVTGNENRKKKVNLKT 190

Query: 200 ----TGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQT-KVLGLVSNGDIRAEIEKE 254
                G   HP + R   I    F+++LE Q++         KVL  +S      +  + 
Sbjct: 191 SNNQNGIKSHPFIDRCFNICMQYFDQILENQQIFDHNSIHIEKVLNHLSEDTKVYQTVQN 250

Query: 255 W-TRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHL 313
           W  +      +E WD L   ++    K+SD+     ++EI+   +YPRLDI+VSK + HL
Sbjct: 251 WIQKTSDFTCLEFWDFLSNTLQ----KSSDKSHLTLLKEIVFAYSYPRLDINVSKDLGHL 306

Query: 314 LKSPFCVHPKTGKIC 328
           LK+PFC+H  TG++C
Sbjct: 307 LKAPFCIHHSTGRLC 321


>gi|367017712|ref|XP_003683354.1| hypothetical protein TDEL_0H02840 [Torulaspora delbrueckii]
 gi|359751018|emb|CCE94143.1| hypothetical protein TDEL_0H02840 [Torulaspora delbrueckii]
          Length = 416

 Score =  220 bits (561), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 118/325 (36%), Positives = 179/325 (55%), Gaps = 10/325 (3%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + +YY+ +FP+     WL +      +   REF+       Y RY SYNS  E K  + K
Sbjct: 22  MQYYYQCLFPFKVIFNWLNHSPKPGRDIVNREFAMAFRSGAYKRYNSYNSVQEFKTQIEK 81

Query: 72  RCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GAIY+  P+  D +  S   P  KELVFDIDM DYD  R CCSGA +CE+CW
Sbjct: 82  ANPDRFEIGAIYNKAPRERDTILKSEMKPLEKELVFDIDMDDYDTFRTCCSGAQVCERCW 141

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           +++++A  +++T L EDF ++  +WVFSGRRG HCWV D+ A  L    R  + +Y++V+
Sbjct: 142 KFITLAMLVVNTTLTEDFAYEDFIWVFSGRRGAHCWVSDKRARILHDLQRRNVLDYVNVV 201

Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQ-TKVLGLVSNGDI 247
                 K        HPHL R+  I++  F   +LEEQ      E   T +L  + + ++
Sbjct: 202 RDRNADKRLSLKRPYHPHLVRSLEILKPHFASIILEEQNPWQNDEHAFTTLLPCLHDKNL 261

Query: 248 RAEIEKEWTRIGPGQDVEKWDRLVAI----IKHHQAKNSDRKLKYAIEEILLELAYPRLD 303
              + + W+        EKW+ +  I    IK  + ++   +L+   E++++   YP+LD
Sbjct: 262 IDALRRYWSENPNRSSKEKWNDIDVIASKEIKTSRKQDYATRLRECKEDMVIATLYPKLD 321

Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
           I V+K   HLLKSPFC+HP TG +C
Sbjct: 322 IEVTKQTIHLLKSPFCIHPSTGNVC 346


>gi|367000025|ref|XP_003684748.1| hypothetical protein TPHA_0C01580 [Tetrapisispora phaffii CBS 4417]
 gi|357523045|emb|CCE62314.1| hypothetical protein TPHA_0C01580 [Tetrapisispora phaffii CBS 4417]
          Length = 416

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 119/331 (35%), Positives = 181/331 (54%), Gaps = 17/331 (5%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + +YY+++FP+     WL + N   ++   REF+       Y RY S+++  E K  + K
Sbjct: 17  MQYYYQQLFPFKTIFNWLNHSNKPTNDIVNREFAMAFRSGAYKRYNSFSTAQEFKATIEK 76

Query: 72  RCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GA+Y+  PK  D +  S   P  KELVFDIDM DYD  R CCSGA +C+KCW
Sbjct: 77  SNPDRFEVGAVYNKPPKERDSILKSEMKPLEKELVFDIDMDDYDAFRTCCSGAQVCQKCW 136

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           +++SIA K+++  L EDF F+  +WVFSGRRG HCWV D+ A  ++   R  + +Y++V+
Sbjct: 137 KFISIAIKVMELTLIEDFGFKDFIWVFSGRRGAHCWVSDKRARLMNDNQRRNVLDYVNVV 196

Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKER--QTKVLGLVSNGD 246
                 K        HPHL R+  +++  F E +LEEQ      +   +T + GL     
Sbjct: 197 RDRSYNKRQALRRPYHPHLARSLEVLKPYFVEVILEEQNPWQDDKNALETLLQGLHDKQL 256

Query: 247 IRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDR---------KLKYAIEEILLEL 297
           I A ++  W         EKW  +  I  ++  +N            +L+   E++++  
Sbjct: 257 IEA-LDSYWASNPNRSSKEKWADIDQIATNNIIRNFKSNARRQEYLARLREGKEDLVIAT 315

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            YP+LDI V+K   HLLKSPFC+HP TG +C
Sbjct: 316 LYPKLDIEVTKQTIHLLKSPFCIHPATGNVC 346


>gi|363745046|ref|XP_424273.3| PREDICTED: uncharacterized protein LOC426646 [Gallus gallus]
          Length = 966

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 129/329 (39%), Positives = 181/329 (55%), Gaps = 53/329 (16%)

Query: 4   KYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPN 63
            ++P +L E+LP +Y+R+FP+G Y RW                     +       N  N
Sbjct: 3   PFEPAALPELLPVFYRRLFPHGAYGRW------------------TSGVTPLLPQPNQHN 44

Query: 64  ELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGAD 123
                        + LGA              F P  KELVFDIDMTDYDDVR CCS AD
Sbjct: 45  ------------TVHLGA--------------FQPVEKELVFDIDMTDYDDVRTCCSSAD 78

Query: 124 ICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLA 183
           IC KCW  M+IA +++D AL ED   +  LWV+SGRRG+HCWVCD+A        R+   
Sbjct: 79  ICSKCWTLMTIAVRVIDRALVEDLGMKHRLWVYSGRRGVHCWVCDDAVRKWSPALRAAAV 138

Query: 184 EYMSVLT--ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLG 240
           EY+S++   A  VKKV L+ + +HP ++R+  ++E  FE   L+ Q++L + ER  KVL 
Sbjct: 139 EYLSLVKGGAETVKKVNLS-EPVHPFIRRSVSVVEKYFEAYALQGQDILGSPERWDKVLA 197

Query: 241 LVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLK--YAIEEILLELA 298
           LV   + R  ++ E+ +      V++W+ L   ++  +   S  K    YA  E++L+  
Sbjct: 198 LVPE-EHRELLQSEFPKK--RDSVQRWELLKGRMERTRRLASSGKGTACYADWEVMLQYC 254

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           +PRLDI+VSKG+ HLLKSPF VHPKTG+I
Sbjct: 255 FPRLDINVSKGIGHLLKSPFSVHPKTGRI 283


>gi|156836890|ref|XP_001642485.1| hypothetical protein Kpol_322p4 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113020|gb|EDO14627.1| hypothetical protein Kpol_322p4 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 417

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 112/327 (34%), Positives = 180/327 (55%), Gaps = 9/327 (2%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNLDNFR--KREFSFTLNGDIYARYISYNSPNELKKD 68
           +E + +YY+ +FP+ P   WL +    +     REF+       Y RY S+++  E K  
Sbjct: 17  SEDMRYYYQFLFPFKPIFNWLNHSPKPSIDIINREFAMAFRSGAYKRYNSFSNVQEFKAQ 76

Query: 69  LIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           + +  P + ++GAIY+  PKD   +  +   P  KELVFDIDM DYD  R CCSGA +C 
Sbjct: 77  IERANPDRFEIGAIYNKPPKDRDSILKTEMKPLEKELVFDIDMDDYDTYRTCCSGAQVCN 136

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW+++++A K+++  L+EDF F   +WVFSGRRG HCW+ D+ A  ++   R  + +Y+
Sbjct: 137 KCWKFITLAMKVMEVTLKEDFGFNDFIWVFSGRRGAHCWISDKRARIMNDLQRKNVLDYV 196

Query: 187 SVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLL--EEQELLSTKERQTKVLGLVSN 244
           +V+      K        HPHL R+  I++  F  ++  E+    + K     +L  + +
Sbjct: 197 NVVRDRNADKRLSLKRPYHPHLSRSLDILKPYFVSIIIEEQNPWENDKHAFDTLLTALHD 256

Query: 245 GDIRAEIEKEWTRIGPGQDVEKW---DRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPR 301
             +   ++K WT        +KW   D + + +K  + +    +LK   E+++L   YP+
Sbjct: 257 KQLIDALKKYWTDNPNRSSRQKWSDIDEIASTLKISRKQEFVNRLKECKEDLVLATLYPK 316

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           LD+ V+K   HLLKSPFC+HP TG +C
Sbjct: 317 LDVEVTKQTIHLLKSPFCIHPSTGNVC 343


>gi|366994362|ref|XP_003676945.1| hypothetical protein NCAS_0F01060 [Naumovozyma castellii CBS 4309]
 gi|342302813|emb|CCC70590.1| hypothetical protein NCAS_0F01060 [Naumovozyma castellii CBS 4309]
          Length = 420

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 116/326 (35%), Positives = 183/326 (56%), Gaps = 12/326 (3%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + +YYK ++P+ P   WL +      +   REF+       Y RY S+NS  E K  + K
Sbjct: 25  MEYYYKHLYPFKPIFNWLNHSVKPGRDITNREFAMAFRSGAYKRYNSFNSLQEFKAQIEK 84

Query: 72  RCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GA+Y+  P+D   L  S   P  KELVFDIDM DYD  R CCSGA +CEKCW
Sbjct: 85  GNPDRFEIGAVYNKPPRDRDSLLKSEMKPLEKELVFDIDMDDYDTFRTCCSGAQVCEKCW 144

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           +++S+A K+++ +L EDF +   +W+FSGRRG HCW+ D+ A  L+   R  + +Y++V+
Sbjct: 145 KFISLAMKVMNVSLEEDFGYDDYIWIFSGRRGAHCWISDKRARILNDLQRRNVLDYLNVV 204

Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKER--QTKVLGLVSNGD 246
                 K        HPH+ R+  I++  F E +LEEQ      E   QT + GL  +  
Sbjct: 205 RDRTASKRLALKRPYHPHVARSLDILKPFFVEIILEEQNPWEDDEHAIQTLLPGL-HDKH 263

Query: 247 IRAEIEKEWTRIGPGQDVEKWDRLVAI----IKHHQAKNSDRKLKYAIEEILLELAYPRL 302
           +  +++  W         EKW  +  +    +K ++ +++  +L+   E++++   YP+L
Sbjct: 264 LIEQLKVFWKANPNRSSREKWGDIDLLASKELKANKKQDAINRLRECKEDLVIATLYPKL 323

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           D+ V+K   HLLK+PFC+HP TG +C
Sbjct: 324 DVEVTKQTIHLLKAPFCIHPATGNVC 349


>gi|308501853|ref|XP_003113111.1| CRE-PRI-1 protein [Caenorhabditis remanei]
 gi|308265412|gb|EFP09365.1| CRE-PRI-1 protein [Caenorhabditis remanei]
          Length = 410

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 128/346 (36%), Positives = 190/346 (54%), Gaps = 31/346 (8%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSP 62
           Y+   L + LP YYK  FP  P+++WL YG    D F +REF+F L  D++ RY SY+  
Sbjct: 3   YNSIRLPQDLPIYYKNFFPAKPFVKWLRYGLSYGDYFNRREFAFILADDVHIRYRSYHDE 62

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGA 122
               K L    P+K+D+GA+Y+  P ++ +H+ +    +ELVFDID+TDYD +RNCC  A
Sbjct: 63  LSFFKALTSTNPEKLDIGAVYNHEPINNKRHTDYQAVERELVFDIDLTDYDPIRNCCKNA 122

Query: 123 DICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCL 182
            +C+KCW++M +A KILD  L + F F+  +WVFSGRRG+HCWV D+ A  L+   RS +
Sbjct: 123 TVCQKCWKFMVLAVKILDFQLDDMFGFKARMWVFSGRRGVHCWVGDKKARMLNNTQRSAI 182

Query: 183 AEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQ---------FEKLLEEQELLSTKE 233
           A  +++   N   +V   G      + R   I+ D          FEK++ EQ  L   +
Sbjct: 183 ATRLNLFKKNGHCEV-TEG---RAKMTRVPPIVRDAFNVAMKDGIFEKMVLEQGWLENSD 238

Query: 234 RQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN--SDRKLKYAIE 291
                   +S G  +  ++   T   P    E+W  L ++      +N  S+  L+  + 
Sbjct: 239 FLD--YPYLSEGFRKQMLDLLETFKTPE---ERWHMLRSVFDEGYRRNLTSNDGLQDVMP 293

Query: 292 EI---------LLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            +         +L+  YPRLD++VS G NHLLKSPFC+HPKTG + 
Sbjct: 294 VMRDRNFLLYFVLQRCYPRLDVNVSTGTNHLLKSPFCIHPKTGNVA 339


>gi|363748212|ref|XP_003644324.1| hypothetical protein Ecym_1265 [Eremothecium cymbalariae
           DBVPG#7215]
 gi|356887956|gb|AET37507.1| hypothetical protein Ecym_1265 [Eremothecium cymbalariae
           DBVPG#7215]
          Length = 439

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 112/325 (34%), Positives = 186/325 (57%), Gaps = 10/325 (3%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + +YY+ ++P+    +WL +      +   REF+       Y RY S+N+  E K+ + +
Sbjct: 45  MQYYYQYLYPFKLIFQWLSHSPKPQRDIINREFAMAFRSGAYKRYNSFNTIQEFKQQIQR 104

Query: 72  RCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GA+Y+  P+D   +  +   P  KELVFDIDM DYD  R CCS A +C+KCW
Sbjct: 105 GNPDRFEIGAVYNKPPRDRDSVLKTEMRPIEKELVFDIDMDDYDAFRTCCSRAQVCDKCW 164

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           +++S+A ++++T+LREDF F   +WVFSGRRG HCW+ D+ A  L    R  + +YM+V+
Sbjct: 165 KFISLAMQVMNTSLREDFGFTEYIWVFSGRRGAHCWISDKRARVLTDIQRRSIIDYMNVI 224

Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQ-FEKLLEEQELLSTKERQTKVLGLVSNGDIR 248
               +++        HPHL R+  I++   F  +L EQ+     E   + L    +    
Sbjct: 225 RDRNLERKLNFIRPYHPHLSRSLNILKPHFFSFILREQDPWKDDELAIQSLLPALHDRQL 284

Query: 249 AEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDR-----KLKYAIEEILLELAYPRLD 303
           A++ K++ +  PG+  EK  + + +I  +Q K + +     +L+   E+ +L + YP+LD
Sbjct: 285 ADMLKQYWKENPGRCSEKKWKDIDVIASNQMKQTRKQDYTTRLRECKEDFILAVLYPKLD 344

Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
           + V+K   HLLK+PFC+HP TG +C
Sbjct: 345 VEVTKQTIHLLKAPFCIHPSTGNVC 369


>gi|221486907|gb|EEE25153.1| DNA primase small subunit, putative [Toxoplasma gondii GT1]
          Length = 509

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 140/402 (34%), Positives = 200/402 (49%), Gaps = 92/402 (22%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLDN-----------FRKREFSFTL-------NGD-IYA 54
           L FYY ++FP+G   +WL Y N  +           F KRE  FT        N D  + 
Sbjct: 20  LLFYYDKLFPFGELSKWLTYKNSPHLPESEANDPLFFAKREVCFTCRKPGGLDNADEFFL 79

Query: 55  RYISYNSPNELK---KDLIKRCPQKIDLGAIYDI-CPKDHLQHSVFTPKMKELVFDIDMT 110
           R+ S+ +  E+K   KD+      K D GA+Y +   +    HS F P+ KELVFDIDM 
Sbjct: 80  RWQSFRTVEEMKEKLKDMSSLVCFKFDFGAVYSVPVSEKDSSHSAFRPEQKELVFDIDMN 139

Query: 111 DYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEA 170
           DYDD+R CC+   +C+KCW ++ +A  +LD ALREDF F+ +LWVFSGRRG+HCWVCD +
Sbjct: 140 DYDDIRTCCTDKRVCQKCWTFLEVAMSLLDAALREDFGFENILWVFSGRRGVHCWVCDSS 199

Query: 171 ALALDGRGRSCLAEYMSVLTAN--PVKKVFLTGD-VLHPHLKRAKLIIEDQFEKLLEEQE 227
           A  L   GR+ L EY+++ T     VKKV L G  V  P + RA  +   QF++LLEEQ+
Sbjct: 200 ARLLPSDGRAQLCEYLNICTGTDQQVKKVTLRGGRVQPPSVDRAFCLAYRQFQRLLEEQD 259

Query: 228 LLSTKERQTKVLGLVSNGDIRAEIEKEW-----------------TRIGPGQDVEKWDR- 269
             ++  R      L ++GD       ++                 +   P +   K +R 
Sbjct: 260 FFASNAR-----ALPASGDFPDSAAPQFHYQKLLNYLPDLSDSSSSHSRPWKGNAKNERR 314

Query: 270 ------LVAIIKHHQAKNSDRKLK----YAIEEILLEL---------------------- 297
                 + A  K H +   +++L+    ++ EE+  EL                      
Sbjct: 315 DGRGGGVFAAAKPHMSAWVEKRLREKSGFSSEELFNELCAVSGCPRPRDFSGRVEDVKQI 374

Query: 298 -----------AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
                      +YPRLDI+VSK + HLLKSPFC+H  TG++C
Sbjct: 375 PSFVKEIVLAYSYPRLDINVSKDIGHLLKSPFCIHHGTGRVC 416


>gi|221506598|gb|EEE32215.1| DNA primase small subunit, putative [Toxoplasma gondii VEG]
          Length = 509

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 140/402 (34%), Positives = 200/402 (49%), Gaps = 92/402 (22%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLDN-----------FRKREFSFTL-------NGD-IYA 54
           L FYY ++FP+G   +WL Y N  +           F KRE  FT        N D  + 
Sbjct: 20  LLFYYDKLFPFGELSKWLTYKNSPHLPESEANDPLFFAKREVCFTCRKPGGLDNADEFFL 79

Query: 55  RYISYNSPNELK---KDLIKRCPQKIDLGAIYDI-CPKDHLQHSVFTPKMKELVFDIDMT 110
           R+ S+ +  E+K   KD+      K D GA+Y +   +    HS F P+ KELVFDIDM 
Sbjct: 80  RWQSFRTVEEMKEKLKDMSSLVCFKFDFGAVYSVPVSEKDSSHSAFRPEQKELVFDIDMN 139

Query: 111 DYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEA 170
           DYDD+R CC+   +C+KCW ++ +A  +LD ALREDF F+ +LWVFSGRRG+HCWVCD +
Sbjct: 140 DYDDIRTCCTDKRVCQKCWTFLEVAMSLLDAALREDFGFENILWVFSGRRGVHCWVCDSS 199

Query: 171 ALALDGRGRSCLAEYMSVLTAN--PVKKVFLTGD-VLHPHLKRAKLIIEDQFEKLLEEQE 227
           A  L   GR+ L EY+++ T     VKKV L G  V  P + RA  +   QF++LLEEQ+
Sbjct: 200 ARLLPSDGRAQLCEYLNICTGTDQQVKKVTLRGGRVQPPSVDRAFCLAYRQFQRLLEEQD 259

Query: 228 LLSTKERQTKVLGLVSNGDIRAEIEKEW-----------------TRIGPGQDVEKWDR- 269
             ++  R      L ++GD       ++                 +   P +   K +R 
Sbjct: 260 FFASNAR-----ALPASGDFPDSAAPQFHYQKLLNYLPDLSDSSSSHSRPWKGNAKNERR 314

Query: 270 ------LVAIIKHHQAKNSDRKLK----YAIEEILLEL---------------------- 297
                 + A  K H +   +++L+    ++ EE+  EL                      
Sbjct: 315 DGRGGGVFAAAKPHMSAWVEKRLREKSGFSSEELFNELCAVSGCPRPRDFSGRVEDVKQI 374

Query: 298 -----------AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
                      +YPRLDI+VSK + HLLKSPFC+H  TG++C
Sbjct: 375 PSFVKEIVLAYSYPRLDINVSKDIGHLLKSPFCIHHGTGRVC 416


>gi|71649883|ref|XP_813652.1| DNA primase small subunit [Trypanosoma cruzi strain CL Brener]
 gi|70878555|gb|EAN91801.1| DNA primase small subunit, putative [Trypanosoma cruzi]
          Length = 412

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 123/303 (40%), Positives = 171/303 (56%), Gaps = 23/303 (7%)

Query: 41  KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKM 100
           +REF FTL GDI++R+ SY++  EL++DLI+  P+KID+GA+Y I P      S   P  
Sbjct: 66  RREFCFTLLGDIFSRFRSYSTSAELRRDLIRYFPEKIDVGAVYTIRPNQKQSASSILPLE 125

Query: 101 KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRR 160
           +ELVFDIDM+DYD VR+CCSG  IC  CW +M+ A  +L   L EDF F+ +L VFSGRR
Sbjct: 126 RELVFDIDMSDYDSVRSCCSGKSICSYCWTWMACAAHVLRRILEEDFGFRYILPVFSGRR 185

Query: 161 GIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKV----FLTGDVLHPHLKRAKL-II 215
           GIH WVCD  A  L    RS L  Y++V+     +++    F+ G  +HP ++R +  +I
Sbjct: 186 GIHLWVCDRRACKLHDDERSALVGYLTVVVPKASRQIVVADFVNGKPIHPTIRRVQRDVI 245

Query: 216 EDQFEKL-LEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAII 274
           +  F +L LE  E         K  G+V +  + A       ++G  +DVE+  R    +
Sbjct: 246 DPAFTRLFLESSESNPNSVLHPKGAGVVYSAIVAA------LKMGSRRDVEQ--RFTQQV 297

Query: 275 KHHQAKNSD-----RKLKYAIEEIL----LELAYPRLDIHVSKGVNHLLKSPFCVHPKTG 325
              +    D     R L  A E +     + L YPRLD HV+   +HLLK PFCVHP T 
Sbjct: 298 PFEEGNVLDWAYVIRALGDAAENVTAAAQILLMYPRLDEHVTTRRDHLLKLPFCVHPGTA 357

Query: 326 KIC 328
            +C
Sbjct: 358 SLC 360


>gi|410084032|ref|XP_003959593.1| hypothetical protein KAFR_0K01020 [Kazachstania africana CBS 2517]
 gi|372466185|emb|CCF60458.1| hypothetical protein KAFR_0K01020 [Kazachstania africana CBS 2517]
          Length = 417

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 118/330 (35%), Positives = 186/330 (56%), Gaps = 17/330 (5%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + +YY+ ++P+     WL +  +   +   RE +       Y RY S++S  E K  + K
Sbjct: 26  MEYYYRSMYPFKEIFEWLNHSEVPSKDMTNRELAMAFRSGAYKRYNSFSSIAEFKSTIEK 85

Query: 72  RCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GAIY+  PK  D +  S   P  KEL+FDIDM DYD  R CCSGA +C+KCW
Sbjct: 86  SNPDRFEIGAIYNKPPKERDSILKSELKPLEKELIFDIDMDDYDLFRTCCSGAMVCDKCW 145

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           +++S+A ++++  L EDF F+  +WVFSGRRG HCW+ D+ A  L+   R  + +Y++V+
Sbjct: 146 KFISLAIQVINICLEEDFGFKDYIWVFSGRRGAHCWISDKRARILNDLQRRNILDYVNVV 205

Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKER--QTKVLGLVSNGD 246
                 K        HPHL R+  +++  F E +LEEQ+     +   +T + GL     
Sbjct: 206 RDRKYDKRLALRRPYHPHLVRSVELLKSHFVEIILEEQDPWQDDKNAFETLLTGLHDKVL 265

Query: 247 IRAEIEKEWTRIGPGQDV-EKWDRLVAIIKHHQAKNSDR-------KLKYAIEEILLELA 298
           I A + K WT   PG+   +KW+ + AI  +    N+++       +L+   E+++L   
Sbjct: 266 IDA-LRKYWTE-NPGRSSKQKWNDIDAIATNDVKINNNKQRNDFMTRLRECKEDVVLATL 323

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           YP+LD+ V+K   HLLK+PFC+HP TG +C
Sbjct: 324 YPKLDVEVTKQTIHLLKAPFCIHPATGNVC 353


>gi|365989488|ref|XP_003671574.1| hypothetical protein NDAI_0H01570 [Naumovozyma dairenensis CBS 421]
 gi|343770347|emb|CCD26331.1| hypothetical protein NDAI_0H01570 [Naumovozyma dairenensis CBS 421]
          Length = 414

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 116/326 (35%), Positives = 177/326 (54%), Gaps = 12/326 (3%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + +YY  ++P+     WL +    N     REF+       Y RY S+++  E K  + K
Sbjct: 21  MEYYYTHLYPFKLIFNWLNHSLTPNRDIVNREFAMAFRSGAYKRYNSFSTIQEFKNQIEK 80

Query: 72  RCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GAIY+  PK  D L  S   P  KEL+FDIDM DYD  R CCSGA +CEKCW
Sbjct: 81  GNPDRFEIGAIYNRPPKERDSLLKSEMQPLEKELIFDIDMDDYDTFRTCCSGAQVCEKCW 140

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           +++S+A  +++T+L EDF ++  +WVFSGRRG HCWV D+ A  L+   R  + EY++V+
Sbjct: 141 KFISLAMSVINTSLMEDFGYEDFIWVFSGRRGAHCWVSDKRARILNDLQRRNVLEYLNVV 200

Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVL--GLVSNGD 246
                 K        HPHL R+   ++  F + +L+EQ      E     L  GL     
Sbjct: 201 RDRTASKRLALKRPYHPHLSRSLDQLKPYFVDIILKEQNPWQNDEHALDTLLPGLYDKQL 260

Query: 247 IRAEIEKEWTRIGPGQDVEKWDRLVAI----IKHHQAKNSDRKLKYAIEEILLELAYPRL 302
           I   +++ W         EKW+ +  I    +K  + ++   +L+   E++++   YP+L
Sbjct: 261 IE-NLKRYWKENPNRSSTEKWNDIDIIASKDLKASKKQDVINRLRECKEDLVIAALYPKL 319

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           D+ V+K   HLLK+PFC+HP TG +C
Sbjct: 320 DVEVTKQTIHLLKAPFCIHPATGNVC 345


>gi|151943167|gb|EDN61502.1| DNA primase p48 polypeptide [Saccharomyces cerevisiae YJM789]
 gi|190406215|gb|EDV09482.1| DNA primase p48 polypeptide [Saccharomyces cerevisiae RM11-1a]
 gi|256274129|gb|EEU09039.1| Pri1p [Saccharomyces cerevisiae JAY291]
 gi|259147267|emb|CAY80520.1| Pri1p [Saccharomyces cerevisiae EC1118]
 gi|323304473|gb|EGA58242.1| Pri1p [Saccharomyces cerevisiae FostersB]
 gi|323333074|gb|EGA74475.1| Pri1p [Saccharomyces cerevisiae AWRI796]
 gi|323337229|gb|EGA78483.1| Pri1p [Saccharomyces cerevisiae Vin13]
 gi|323354515|gb|EGA86352.1| Pri1p [Saccharomyces cerevisiae VL3]
 gi|365765031|gb|EHN06546.1| Pri1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 409

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 118/325 (36%), Positives = 178/325 (54%), Gaps = 10/325 (3%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + +YYK ++P+     WL +      +   REF+       Y RY S+NS  + K  + K
Sbjct: 15  MEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIEK 74

Query: 72  RCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GAIY+  P+  D L  S      KELVFDIDM DYD  R CCSGA +C KCW
Sbjct: 75  ANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSGAQVCSKCW 134

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           +++S+A KI++TALREDF ++  +WVFSGRRG HCWV D+ A AL    R  + +Y++V+
Sbjct: 135 KFISLAMKIMNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRNVLDYVNVI 194

Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTK-VLGLVSNGDI 247
                 K        HPHL R+   ++  F   +LEEQ      +   + +L  + +  +
Sbjct: 195 RDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLLPALYDKQL 254

Query: 248 RAEIEKEWTRIGPGQDVEKWDRL----VAIIKHHQAKNSDRKLKYAIEEILLELAYPRLD 303
              ++K W         EKW+ +     ++ K  +  +   KL+   E+++L   YP+LD
Sbjct: 255 IDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVLMTLYPKLD 314

Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
           + V+K   HLLK+PFC+HP TG +C
Sbjct: 315 VEVTKQTIHLLKAPFCIHPATGNVC 339


>gi|323348090|gb|EGA82345.1| Pri1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 397

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 118/325 (36%), Positives = 178/325 (54%), Gaps = 10/325 (3%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + +YYK ++P+     WL +      +   REF+       Y RY S+NS  + K  + K
Sbjct: 15  MEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIEK 74

Query: 72  RCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GAIY+  P+  D L  S      KELVFDIDM DYD  R CCSGA +C KCW
Sbjct: 75  ANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSGAQVCSKCW 134

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           +++S+A KI++TALREDF ++  +WVFSGRRG HCWV D+ A AL    R  + +Y++V+
Sbjct: 135 KFISLAMKIMNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRNVLDYVNVI 194

Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTK-VLGLVSNGDI 247
                 K        HPHL R+   ++  F   +LEEQ      +   + +L  + +  +
Sbjct: 195 RDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLLPALYDKQL 254

Query: 248 RAEIEKEWTRIGPGQDVEKWDRL----VAIIKHHQAKNSDRKLKYAIEEILLELAYPRLD 303
              ++K W         EKW+ +     ++ K  +  +   KL+   E+++L   YP+LD
Sbjct: 255 IDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVLMTLYPKLD 314

Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
           + V+K   HLLK+PFC+HP TG +C
Sbjct: 315 VEVTKQTIHLLKAPFCIHPATGNVC 339


>gi|349578959|dbj|GAA24123.1| K7_Pri1p [Saccharomyces cerevisiae Kyokai no. 7]
          Length = 409

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 118/325 (36%), Positives = 178/325 (54%), Gaps = 10/325 (3%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + +YYK ++P+     WL +      +   REF+       Y RY S+NS  + K  + K
Sbjct: 15  MEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIEK 74

Query: 72  RCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GAIY+  P+  D L  S      KELVFDIDM DYD  R CCSGA +C KCW
Sbjct: 75  ANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSGAQVCSKCW 134

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           +++S+A KI++TALREDF ++  +WVFSGRRG HCWV D+ A AL    R  + +Y++V+
Sbjct: 135 KFISLAMKIMNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRNVLDYVNVI 194

Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTK-VLGLVSNGDI 247
                 K        HPHL R+   ++  F   +LEEQ      +   + +L  + +  +
Sbjct: 195 RDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLLPALYDKQL 254

Query: 248 RAEIEKEWTRIGPGQDVEKWDRL----VAIIKHHQAKNSDRKLKYAIEEILLELAYPRLD 303
              ++K W         EKW+ +     ++ K  +  +   KL+   E+++L   YP+LD
Sbjct: 255 IDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVLMTLYPKLD 314

Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
           + V+K   HLLK+PFC+HP TG +C
Sbjct: 315 VEVTKQTIHLLKAPFCIHPATGNVC 339


>gi|258564951|ref|XP_002583220.1| DNA primase small subunit [Uncinocarpus reesii 1704]
 gi|237906921|gb|EEP81322.1| DNA primase small subunit [Uncinocarpus reesii 1704]
          Length = 518

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 190/341 (55%), Gaps = 24/341 (7%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTL-------NGDIYARYISYNSP- 62
           +E +  +Y+ + P+G  +R L+   +  +  +    TL          +    +S  S  
Sbjct: 85  SETMYAFYQLVKPWGQTVRRLWESRIRVYTSKRRISTLPIISNSRRASVAKTRLSTTSAL 144

Query: 63  --------NELKKDLIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTD 111
                   + L+ D+++  P + ++G +Y   P+D     + S F P  KELVFDID+TD
Sbjct: 145 FGELIGLRDRLRNDILRLNPSRFEIGPVYSTNPRDRKTLRKSSAFRPVSKELVFDIDLTD 204

Query: 112 YDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAA 171
           YDD+R CC  A+IC KCW ++++A K++D ALR+DF F+ +LWV+SGRRG H WVCD+ A
Sbjct: 205 YDDIRTCCEKANICSKCWAFVTMAVKVIDCALRDDFGFEHILWVYSGRRGAHAWVCDQRA 264

Query: 172 LALDGRGRSCLAEYMSVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQEL 228
             L    R  +A Y+ V+   A   K+V +    LHPH+ R+  ++   F   +L +Q+ 
Sbjct: 265 RNLADDRRRAIAGYLEVVRGGAQSGKRVNVKR-PLHPHITRSLEVLRPYFGSTVLNDQDT 323

Query: 229 LSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LK 287
            S+ ++ +++L L+ +  ++  ++K+W          KW  +  + K    ++ D K L 
Sbjct: 324 FSSWDQASRLLQLIPDKSLKDSLQKKWESAPSRASSLKWSDIDKVAKTSGGRSLDTKALL 383

Query: 288 YAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            A ++I+LE  YPRLD  VSK + HLLKSPF VHP TG++C
Sbjct: 384 EAKQDIVLEYTYPRLDAEVSKKMIHLLKSPFVVHPGTGRVC 424


>gi|6322198|ref|NP_012273.1| Pri1p [Saccharomyces cerevisiae S288c]
 gi|730382|sp|P10363.2|PRI1_YEAST RecName: Full=DNA primase small subunit; AltName: Full=DNA
           polymerase alpha:primase complex p48 subunit; Short=DNA
           polymerase-primase complex p48 subunit; Short=Pol
           alpha-primase complex p48 subunit; AltName: Full=DNA
           primase 48 kDa subunit
 gi|556854|emb|CAA86078.1| DNA primase small chain [Saccharomyces cerevisiae]
 gi|4468674|emb|CAB38098.1| PRI1 protein [Saccharomyces cerevisiae]
 gi|51013169|gb|AAT92878.1| YIR008C [Saccharomyces cerevisiae]
 gi|285812655|tpg|DAA08554.1| TPA: Pri1p [Saccharomyces cerevisiae S288c]
 gi|346228219|gb|AEO21096.1| PRI1 [synthetic construct]
 gi|392298731|gb|EIW09827.1| Pri1p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 409

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 118/325 (36%), Positives = 177/325 (54%), Gaps = 10/325 (3%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + +YYK ++P+     WL +      +   REF+       Y RY S+NS  + K  + K
Sbjct: 15  MEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIEK 74

Query: 72  RCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GAIY+  P+  D L  S      KELVFDIDM DYD  R CCSGA +C KCW
Sbjct: 75  ANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSGAQVCSKCW 134

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           +++S+A KI +TALREDF ++  +WVFSGRRG HCWV D+ A AL    R  + +Y++V+
Sbjct: 135 KFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRNVLDYVNVI 194

Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTK-VLGLVSNGDI 247
                 K        HPHL R+   ++  F   +LEEQ      +   + +L  + +  +
Sbjct: 195 RDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLLPALYDKQL 254

Query: 248 RAEIEKEWTRIGPGQDVEKWDRL----VAIIKHHQAKNSDRKLKYAIEEILLELAYPRLD 303
              ++K W         EKW+ +     ++ K  +  +   KL+   E+++L   YP+LD
Sbjct: 255 IDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVLMTLYPKLD 314

Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
           + V+K   HLLK+PFC+HP TG +C
Sbjct: 315 VEVTKQTIHLLKAPFCIHPATGNVC 339


>gi|156043016|ref|XP_001588065.1| hypothetical protein SS1G_11308 [Sclerotinia sclerotiorum 1980]
 gi|154695692|gb|EDN95430.1| hypothetical protein SS1G_11308 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 462

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/271 (40%), Positives = 170/271 (62%), Gaps = 9/271 (3%)

Query: 65  LKKDLIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
           L+KD+++  P + ++G +Y   P+D     + S F P  KEL FDID+TDYD++R CC  
Sbjct: 110 LRKDVLRLMPSRFEIGPVYSTNPRDRKTLRKSSAFRPIAKELCFDIDLTDYDEIRTCCDK 169

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
           A+IC KCW+++++A K++D ALR+DF F+ ++WV+SGRRG H WVCD+ A  +D + R  
Sbjct: 170 ANICNKCWQFITMAIKVVDVALRDDFGFKHIMWVYSGRRGAHAWVCDKKARQMDDQKRRA 229

Query: 182 LAEYMSVL--TANPVKKVFLTGDVLHPHLKRAKL-IIEDQFEK-LLEEQELLSTKERQTK 237
           +A Y+ ++   A   KKV +    LHPH+ R  L I++  F+  +L++Q+     ++  K
Sbjct: 230 IAGYLELIRGGAQTAKKVNVKR-PLHPHVFRRSLDILKGHFQNDILQDQDPWEEDDKVDK 288

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLEL 297
           +L L+ +  +   + K+W+         KW  + A+ K  +  +  R L  A ++I+LE 
Sbjct: 289 LLQLLPDRTLNESLRKKWSSSPGRSSASKWADIDALAKTTKGLDP-RALLEAKQDIVLEY 347

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            YPRLDI VSK +NHLLKSPF VHP TG++C
Sbjct: 348 TYPRLDIEVSKHLNHLLKSPFVVHPGTGRVC 378


>gi|401406864|ref|XP_003882881.1| putative DNA primase small subunit [Neospora caninum Liverpool]
 gi|325117297|emb|CBZ52849.1| putative DNA primase small subunit [Neospora caninum Liverpool]
          Length = 516

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 138/405 (34%), Positives = 198/405 (48%), Gaps = 91/405 (22%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLDN-----------FRKREFSFTL-------NGD-IYA 54
           L FYY ++FP+G   +WL Y N  +           F KRE  FT        N D  + 
Sbjct: 20  LLFYYDKLFPFGELSKWLTYKNSPHLPESEANDPLFFAKREVCFTCRKPGGVDNADEFFL 79

Query: 55  RYISYNSPNELK---KDLIKRCPQKIDLGAIYD--ICPKDHLQHSVFTPKMKELVFDIDM 109
           R+ S+ +  E+K   KD+      K D GA+Y   +  KD   H+ F P+ KELVFDIDM
Sbjct: 80  RWQSFRTVEEMKERLKDMSSLVCFKFDFGAVYSLPVSEKDSF-HTAFKPEQKELVFDIDM 138

Query: 110 TDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDE 169
            DYDD+R CC+   +C+KCW ++ +A  +LD+ALREDF F+ +LWV+SGRRG+HCWVCD 
Sbjct: 139 NDYDDIRTCCTDKRVCQKCWAFLEVAMSLLDSALREDFGFENILWVYSGRRGVHCWVCDS 198

Query: 170 AALALDGRGRSCLAEYMSVLTAN--PVKKVFLTGDVLHPH-LKRAKLIIEDQFEKLLEEQ 226
           +A  L   GR+ L EY+++ T +   +KKV L G  + P+ + RA  +   +F++LLEEQ
Sbjct: 199 SARLLPSDGRAQLCEYLNLCTGSDQQMKKVMLRGGRVQPYFVDRAFCLAYRRFQRLLEEQ 258

Query: 227 ELLSTKERQTKVLGLVSNG---------------DIRAEI---EKEWT-------RIGP- 260
           +  ++        G   +                D  AE     + W        R G  
Sbjct: 259 DFFASDSPHLPASGEFQDSTAPQFHYQKLLNYLPDFAAETSGSSRSWKGTAKSERREGAR 318

Query: 261 GQDVEKWDRLVAIIKHHQA----KNSDRKLKYAIEEILLEL------------------- 297
           G          A+ K H +    K    + +++ EE+  EL                   
Sbjct: 319 GAPAGASSGAFAVAKPHMSAWVKKRVSERRRFSSEELFNELCAVAGCPRPRDFSGDVEDV 378

Query: 298 --------------AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
                         +YPRLDI+VSK + HLLKSPFC+H  TG++C
Sbjct: 379 KQIPSFIKEIVLAYSYPRLDINVSKDIGHLLKSPFCIHHSTGRVC 423


>gi|407426843|gb|EKF39732.1| DNA primase small subunit, putative [Trypanosoma cruzi marinkellei]
          Length = 451

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/303 (40%), Positives = 170/303 (56%), Gaps = 23/303 (7%)

Query: 41  KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKM 100
           +REF FTL GDI++R+ SY++  EL++DLI+  P+KID+GA+Y I P      S   P  
Sbjct: 105 RREFCFTLLGDIFSRFRSYSTSAELRRDLIRCFPEKIDVGAVYTIRPNQKQSASSILPLE 164

Query: 101 KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRR 160
           +ELVFDIDM+DYD VR+CCSG  IC  CW +M+ A  +L   L EDF F+ +L VFSGRR
Sbjct: 165 RELVFDIDMSDYDSVRSCCSGKSICSYCWTWMACAAHVLRRILEEDFGFRHILPVFSGRR 224

Query: 161 GIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKV----FLTGDVLHPHLKRAKL-II 215
           GIH WVCD  A  L    RS L  Y++V+     ++V    F+ G  +HP ++R +  +I
Sbjct: 225 GIHLWVCDRRACKLHDDERSALVGYLTVVVPKASRQVVVAEFVNGKPIHPTIRRVQRDVI 284

Query: 216 EDQFEKL-LEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAII 274
           +  F +L LE  E         K   +V +  + A       ++G  +DVE+  R    +
Sbjct: 285 DPAFTRLFLESSESNPNSVLHPKGASVVYSAIVAA------LKMGSRRDVEQ--RFTQQV 336

Query: 275 KHHQAKNSD-----RKLKYAIEEIL----LELAYPRLDIHVSKGVNHLLKSPFCVHPKTG 325
              +    D     R L  A E +     + L YPRLD HV+   +HLLK PFCVHP T 
Sbjct: 337 PFEEGNVLDWAYVIRALGDAAENVTAAAQILLMYPRLDEHVTTRRDHLLKLPFCVHPGTA 396

Query: 326 KIC 328
            +C
Sbjct: 397 SLC 399


>gi|365760106|gb|EHN01849.1| Pri1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 406

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 120/329 (36%), Positives = 179/329 (54%), Gaps = 12/329 (3%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           T  + +YYK ++P+     WL +      +   REF+       Y RY S+NS  E K  
Sbjct: 12  TSDMEYYYKSLYPFKHVFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQEFKAQ 71

Query: 69  LIKRCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           + +  P + ++GAIY+  P+  D L  S      KELVFDIDM DYD  R CCSGA +C 
Sbjct: 72  IERSNPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDSFRTCCSGAQVCF 131

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW+++S+A KI++TAL EDF +  L+WVFSGRRG HCWV D+ A AL    R  + +Y+
Sbjct: 132 KCWKFISLAMKIMNTALTEDFGYNDLIWVFSGRRGAHCWVSDKRARALTDIQRRNVLDYV 191

Query: 187 SVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQT-KVLGLVSN 244
           +V+      K        HPHL R+   ++  F   +LEEQ      +     +L  + +
Sbjct: 192 NVVRDRNTDKRLALKRPYHPHLARSLEQLKPFFISIMLEEQNPWEDDQHAIDTLLPALYD 251

Query: 245 GDIRAEIEKEWTRIGPGQDV-EKWDRL----VAIIKHHQAKNSDRKLKYAIEEILLELAY 299
             +   + K W    PG+   EKW+ +     ++ K  +  +   +L+   E+++L   Y
Sbjct: 252 KQLIDSLRKHWLD-NPGRSSKEKWNDIDRVATSLFKGPKQDSHIGRLRECKEDLVLMTLY 310

Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           P+LD+ V+K   HLLK+PFC+HP TG +C
Sbjct: 311 PKLDVEVTKQTIHLLKAPFCIHPATGNVC 339


>gi|4225|emb|CAA68513.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 409

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 116/325 (35%), Positives = 176/325 (54%), Gaps = 10/325 (3%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + +YYK ++P+     WL +      +   REF+       Y RY S+NS  + K  + K
Sbjct: 15  MEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIEK 74

Query: 72  RCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GAIY+  P+  D L  S      KELVFDIDM DYD  R CCSGA +C KCW
Sbjct: 75  ANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSGAQVCSKCW 134

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           +++S+A KI +TALREDF ++  +WVFSGRRG HCWV D+ A AL    R  + +Y++V+
Sbjct: 135 KFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRNVLDYVNVI 194

Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQT--KVLGLVSNGDI 247
                 K        HPHL R+   ++  F  ++ E E     ++     +L  + +  +
Sbjct: 195 RDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEDENPWEDDQHAIQTLLPALYDKQL 254

Query: 248 RAEIEKEWTRIGPGQDVEKWDRL----VAIIKHHQAKNSDRKLKYAIEEILLELAYPRLD 303
              ++K W         EKW+ +     ++ K  +  +   KL+   E+++L   YP+LD
Sbjct: 255 IDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVLMTLYPKLD 314

Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
           + V+K   HLLK+PFC+HP TG +C
Sbjct: 315 VEVTKQTIHLLKAPFCIHPATGNVC 339


>gi|291390236|ref|XP_002711634.1| PREDICTED: DNA primase polypeptide 1, partial [Oryctolagus
           cuniculus]
          Length = 335

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 114/246 (46%), Positives = 157/246 (63%), Gaps = 8/246 (3%)

Query: 87  PKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALR 144
           P  H  ++   F  + KELVFDIDMTDYDDVR CCS ADIC KCW  M++A  I+D AL+
Sbjct: 3   PSQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICSKCWTLMTMAILIIDRALK 62

Query: 145 EDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANP-VKKVFLTGDV 203
           E F F+  LWV+SGRRG+HCWVCDE+   L    RS + EY+S++     VKK     + 
Sbjct: 63  EVFGFKHRLWVYSGRRGVHCWVCDESVRKLSSTVRSGIVEYLSLVKGGQDVKKKVHLNEK 122

Query: 204 LHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQ 262
           +HP ++R+  II+  FE+  L  Q++L  KE   K+L LV    I A++++ + +     
Sbjct: 123 VHPFVRRSINIIKKYFEEYALVGQDILENKESWDKILALVPEA-IHADLQQGFQKCHSS- 180

Query: 263 DVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILLELAYPRLDIHVSKGVNHLLKSPFCVH 321
            +++W+ L   I  HQ    + K    +E EI+L+  +PRLDI+VSKG+NHLLKSPF VH
Sbjct: 181 -LQRWEHLKKTIAKHQNNTKNDKCAPWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVH 239

Query: 322 PKTGKI 327
           PKTG+I
Sbjct: 240 PKTGRI 245


>gi|407861596|gb|EKG07689.1| DNA primase small subunit, putative [Trypanosoma cruzi]
          Length = 412

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 121/303 (39%), Positives = 170/303 (56%), Gaps = 23/303 (7%)

Query: 41  KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKM 100
           +REF FTL GDI++R+ SY++  EL++DLI+  P+KID+GA+Y I P      S   P  
Sbjct: 66  RREFCFTLLGDIFSRFRSYSTSAELRRDLIRCFPEKIDVGAVYTIRPNQKQSASSILPLE 125

Query: 101 KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRR 160
           +ELVFDIDM+DYD VR+CCSG  IC  CW +M+ A  +L   L EDF F+ +L VFSGRR
Sbjct: 126 RELVFDIDMSDYDSVRSCCSGKSICSYCWTWMACAAHVLRRILEEDFGFRYILPVFSGRR 185

Query: 161 GIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKV----FLTGDVLHPHLKRAKL-II 215
           GIH WVCD  A  L    RS +  Y++V+     +++    F+ G  +HP ++R +  +I
Sbjct: 186 GIHLWVCDRRACKLHDDERSAIVGYLTVVVPKASRQIVVADFVNGKPIHPTIRRVQRDVI 245

Query: 216 EDQFEKL-LEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAII 274
           +  F +L LE  E         K   +V +  + A       ++G  +DVE+  R    +
Sbjct: 246 DPAFTRLFLESSESNPNSVLHPKGASVVYSTIVAA------LKMGSRRDVEQ--RFTQQV 297

Query: 275 KHHQAKNSD-----RKLKYAIEEIL----LELAYPRLDIHVSKGVNHLLKSPFCVHPKTG 325
              +    D     R L  A E +     + L YPRLD HV+   +HLLK PFCVHP T 
Sbjct: 298 PFEEGNVLDWAYVIRALGDAAENVTAAAQILLMYPRLDEHVTTRRDHLLKLPFCVHPGTA 357

Query: 326 KIC 328
            +C
Sbjct: 358 SLC 360


>gi|429328863|gb|AFZ80622.1| DNA primase small subunit, putative [Babesia equi]
          Length = 425

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/332 (36%), Positives = 182/332 (54%), Gaps = 17/332 (5%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTL-------NGDIYARYISYNSPNELK 66
           L FYYK + P    +RW+ Y + +   KRE S T          ++Y R+ +Y   ++  
Sbjct: 74  LRFYYKHLCPVKELIRWVSYEDSNVLCKREISLTYQRETSSDTNEVYIRWQTYEGVDQFY 133

Query: 67  KDLIKR--CPQKIDLGAIYDI-CPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGAD 123
           + L +R   P K D+GAIY+       L    F    +ELVFDIDM DYD+ R CC+   
Sbjct: 134 QTLCERDTVPFKFDIGAIYNRRVSLMQLSGGDFRAVERELVFDIDMDDYDEFRTCCTEKK 193

Query: 124 ICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLA 183
           IC KCWR++ IA +++   L+ DF ++ +LWV+SGRRGIHCWVCD+ A  L   GR  + 
Sbjct: 194 ICRKCWRFIRIAVELITKTLQVDFGYKDILWVYSGRRGIHCWVCDKRARELPSDGRIAII 253

Query: 184 EYMSVLTANP--VKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGL 241
           EY++++T     VKKV L     HP ++R+  +    F+ LL EQ LLS K   T +  +
Sbjct: 254 EYLNLITGGDGYVKKVSLFSCEQHPLVQRSFDVCYSNFKDLLVEQNLLSLKHLPTILEYI 313

Query: 242 VSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIK-----HHQAKNSDRKLKYAIEEILLE 296
                   ++ ++    G    +  +++L   +       +Q+K       Y   EI++ 
Sbjct: 314 PEKQQHARKLIQDAINGGSRDSLSLFNQLCDSLSLPNPHEYQSKRDPSVFPYYFIEIVIA 373

Query: 297 LAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            +YPRLD++V+K + HLLKSPFCVH KTG+IC
Sbjct: 374 FSYPRLDVNVTKDIGHLLKSPFCVHAKTGRIC 405


>gi|255717006|ref|XP_002554784.1| KLTH0F13728p [Lachancea thermotolerans]
 gi|238936167|emb|CAR24347.1| KLTH0F13728p [Lachancea thermotolerans CBS 6340]
          Length = 417

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/331 (35%), Positives = 181/331 (54%), Gaps = 13/331 (3%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           T  + +YY+ ++P+ P   WL +      +   RE +       Y RY S++S  E K  
Sbjct: 19  TSDMQYYYQYLYPFKPIFTWLNHSPKPGRDMINRELAMAFRSGAYKRYNSFDSVQEFKNQ 78

Query: 69  LIKRCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           + +  P + ++GAIY+  P+  D +  +   P  KE+VFDIDM DYD  R CCSGA +C 
Sbjct: 79  IQRANPDRFEIGAIYNKPPRNMDSILKAEMKPLEKEVVFDIDMDDYDSYRTCCSGASVCS 138

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW+++S+A K+++ AL EDF ++  +WVFSGRRG HCWV D+ +  L    R  + +YM
Sbjct: 139 KCWKFISLAMKVINVALVEDFGYEDFIWVFSGRRGAHCWVSDKRSRLLSDIQRRSVLDYM 198

Query: 187 SVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVSNG 245
           +V+    + K        HPHL R+  I++  F E +L EQ+     +     L    + 
Sbjct: 199 NVVRERNLDKRLNLKRPYHPHLTRSLDILKPYFVEIILREQDPWRDDDMAFGSLLTGLHD 258

Query: 246 DIRAEIEKEWTRIGPGQDVE-KWDRLVAI----IKH-HQAKNSD--RKLKYAIEEILLEL 297
               E+ K + +  P +  E KW  + A+    +KH   +K +D   KL    E+++L  
Sbjct: 259 KNLIEVLKRYWKSNPRRSSEQKWSDIDALAASQLKHPSSSKKTDFFNKLHECKEDLVLAT 318

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            YP+LD+ V+K   HLLK+PFC+HP TG +C
Sbjct: 319 LYPKLDVEVTKQTIHLLKAPFCIHPATGNVC 349


>gi|401837851|gb|EJT41709.1| PRI1-like protein [Saccharomyces kudriavzevii IFO 1802]
          Length = 405

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 118/325 (36%), Positives = 175/325 (53%), Gaps = 8/325 (2%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           T  + +YYK ++P+     WL +      +   REF+       Y RY S+NS  E K  
Sbjct: 12  TSDMEYYYKSLYPFKHVFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQEFKAQ 71

Query: 69  LIKRCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
           + +  P + ++GAIY+  P+  D L  S      KELVFDIDM DYD  R CCSGA +C 
Sbjct: 72  IERSNPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDSFRTCCSGAQVCF 131

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW+++S+A KI++TAL ED  ++ L+WVFSGRRG HCWV D+ A AL    R  + +Y+
Sbjct: 132 KCWKFISLAMKIMNTALTEDLGYKDLIWVFSGRRGAHCWVSDKRARALTDIQRRNVLDYV 191

Query: 187 SVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQT-KVLGLVSN 244
           +V+      K        HPHL R+   ++  F   +LEEQ      +     +L  + +
Sbjct: 192 NVVRDRNTDKRLALKRPYHPHLARSLEQLKPFFISIMLEEQNPWEDDQHAIDTLLPALYD 251

Query: 245 GDIRAEIEKEWTRIGPGQDV-EKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLD 303
             +   + K W    PG+   EKW+ +  +           +L+   E+++L   YP+LD
Sbjct: 252 KQLIDSLRKHWLD-NPGRSSKEKWNDIDRVATSLFKGPHIGRLRECKEDLVLMTLYPKLD 310

Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
           + V+K   HLLK+PFC+HP TG +C
Sbjct: 311 VEVTKQTIHLLKAPFCIHPATGNVC 335


>gi|226295017|gb|EEH50437.1| DNA primase small subunit [Paracoccidioides brasiliensis Pb18]
          Length = 525

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 110/286 (38%), Positives = 167/286 (58%), Gaps = 23/286 (8%)

Query: 65  LKKDLIKRCPQKIDLGAIYDICPKDH---LQHSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
           L+K+++   P + ++G IY   P+D     + S F P  KELVFDID+TDYDD+R CC+ 
Sbjct: 120 LRKEILHLNPSRFEIGPIYSTNPRDRKSLRKASSFKPIAKELVFDIDLTDYDDIRTCCTK 179

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
           A+IC KCW ++++A K++DTALREDF F+ +LWV+SGRRG H WVCD  A +L    R  
Sbjct: 180 ANICSKCWSFVTMAIKVIDTALREDFGFEHVLWVYSGRRGAHAWVCDAKARSLSDDRRKA 239

Query: 182 LAEYMSVL--TANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKV 238
           +A Y+ V+   +   K+V +    LHPH+ R+  I++  F   +L +Q+  S+  +  ++
Sbjct: 240 IAGYLEVVRGGSQSGKRVNIKR-PLHPHVARSLEILKPYFASTILGDQDTFSSAVQAEQL 298

Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD--------------- 283
           L L+ +  +   + K+W          KW+ + A+ K  +++  D               
Sbjct: 299 LSLLPDKPLVDALRKKWDSAPGRSSTSKWNDIDALAKSVRSRGPDGKGKGGVGGGGKALD 358

Query: 284 -RKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            + L  A ++I LE  YPRLD  VSK + HLLKSPF VHP TG++C
Sbjct: 359 TKALLEAKQDIALEYTYPRLDAEVSKKLIHLLKSPFVVHPGTGRVC 404


>gi|403222486|dbj|BAM40618.1| DNA primase small subunit [Theileria orientalis strain Shintoku]
          Length = 427

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/364 (33%), Positives = 183/364 (50%), Gaps = 39/364 (10%)

Query: 1   MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLN-------GDIY 53
           MA   D       L FYYK   P    +RW+ Y +     KRE SFT          +IY
Sbjct: 1   MAIVEDSIVTESSLRFYYKNFCPVKDLIRWISYEDSTILNKREISFTYQKGGMNDVSEIY 60

Query: 54  ARYISYNSPNELKKDL--IKRCPQKIDLGAIYDICPKDHLQH--SVFTPKMKELVFDIDM 109
            R+ S++  ++  K L      P K D+GAIY    K  L H  + F P  +ELVFDIDM
Sbjct: 61  VRWQSFDGSDKFYKTLCEFDTVPFKFDIGAIYS--KKIALMHLTTDFRPVQRELVFDIDM 118

Query: 110 TDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDE 169
            DYD+ R CC+   +C KCWR++ IA +++   L  DF F+ +LWV+SGRRGIHCWVCD 
Sbjct: 119 DDYDNYRTCCTDKKVCIKCWRFIKIAVELITRTLEVDFGFKNILWVYSGRRGIHCWVCDS 178

Query: 170 AALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELL 229
            A +L   GR  + +Y+++++    KKV + G   HP + RA  +    F+ LL EQ L 
Sbjct: 179 KARSLPAEGRISIIDYLNLISEGYTKKVNVYGMESHPLIARAFDVCYRNFKDLLVEQNLF 238

Query: 230 STKERQTKVL------------GLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHH 277
             K+    +L             +++ G + + ++  +  +    +V++         H 
Sbjct: 239 KNKQHVNSLLDYIPERYAPARKAVMNAGKVTSSLD-FFNSLCDSLNVQRPGEYTTSKAHT 297

Query: 278 Q-------------AKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKT 324
                          + +         +I++  +YPRLD++V+K + HLLK+PFCVH KT
Sbjct: 298 SGGSGRSTSGIPGGVRGTRNYFPSFFMDIVIAFSYPRLDVNVTKDIGHLLKAPFCVHAKT 357

Query: 325 GKIC 328
           G+IC
Sbjct: 358 GRIC 361


>gi|348681630|gb|EGZ21446.1| hypothetical protein PHYSODRAFT_360096 [Phytophthora sojae]
          Length = 209

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/203 (48%), Positives = 134/203 (66%), Gaps = 6/203 (2%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNLDNFR-KREFSFTLNGDIYARYISYNSPNELKKDL 69
            E+L  YY R+FPY    +WL Y   + F  +RE S+TL  D Y RY ++++  ELK  +
Sbjct: 8   AELLQLYYDRLFPYQQITQWLSYDGGEEFLFRRELSYTLENDTYIRYKAFHNAEELKASM 67

Query: 70  IKRCPQKIDLGAIYDICPKDHLQHSV--FTPKMKELVFDIDMTDYDDVRNCCSGADICEK 127
            K  P KID+GA++ + P D  + S   FTP+ +ELVFDID+TDYDD+R CC GA IC +
Sbjct: 68  SKTLPFKIDIGAVFSVSPADKGKVSAADFTPEQRELVFDIDLTDYDDIRTCCEGAAICNR 127

Query: 128 CWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMS 187
           CW++M  A ++L+ ALREDF F+ LLWV+SGRRGIHCWV DE A AL+   RS +  Y+S
Sbjct: 128 CWQFMVAAVEVLNAALREDFGFENLLWVYSGRRGIHCWVSDEQARALENEARSAVVGYLS 187

Query: 188 VLTA--NPVKKVFLTGDVLHPHL 208
           ++    N  +KV L  + LHP L
Sbjct: 188 LVEGNENSARKVKLR-EPLHPSL 209


>gi|261329316|emb|CBH12297.1| DNA primase small subunit, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 421

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 168/302 (55%), Gaps = 21/302 (6%)

Query: 41  KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKM 100
           +REF FTL GDI+ R+ SY+S  EL+++LI+  P+KID+GA+Y+I P    +     P  
Sbjct: 75  RREFCFTLLGDIFTRFRSYSSVTELRRELIRSFPEKIDVGAVYNIRPNQKQKVGTIVPVE 134

Query: 101 KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRR 160
           +ELVFDIDM+DYD+ R+CC+G  IC  CW +MS A  +L   L +DF F+ L  VFSGRR
Sbjct: 135 RELVFDIDMSDYDNSRSCCTGKSICRWCWTWMSCAAAVLRKVLEDDFGFRYLFPVFSGRR 194

Query: 161 GIHCWVCDEAALALDGRGRSCLAEYMSVL----TANPVKKVFLTGDVLHPHLKRAKLIIE 216
           GIH WVCD+ A  +    RS L  Y++V+    + + V   F+ G  +HP ++  +  + 
Sbjct: 195 GIHLWVCDKRACKMHDDERSALVSYLTVVVPKASQHAVVADFVNGKPIHPTIQHVQATVL 254

Query: 217 D-QFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIK 275
           D  F  L     L ST E   +V        +   I     ++G  +DVE+  R +  + 
Sbjct: 255 DPSFTSLF----LNSTPENPNRVTHPKGARIVYKAIVSA-LKMGTRRDVEQ--RFLRNVP 307

Query: 276 HHQAKNSD-----RKLKYAIEEIL----LELAYPRLDIHVSKGVNHLLKSPFCVHPKTGK 326
             +    D     R L  A   ++    + L YPRLD HVS   +HLLK PFCVHP TG 
Sbjct: 308 FEEGNILDWTYVLRTLGDAATNVIAAAQILLMYPRLDEHVSTRRDHLLKLPFCVHPATGS 367

Query: 327 IC 328
           +C
Sbjct: 368 LC 369


>gi|72391120|ref|XP_845854.1| DNA primase small subunit [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|62175486|gb|AAX69626.1| DNA primase small subunit, putative [Trypanosoma brucei]
 gi|70802390|gb|AAZ12295.1| DNA primase small subunit, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 421

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 168/302 (55%), Gaps = 21/302 (6%)

Query: 41  KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKM 100
           +REF FTL GDI+ R+ SY+S  EL+++LI+  P+KID+GA+Y+I P    +     P  
Sbjct: 75  RREFCFTLLGDIFTRFRSYSSVTELRRELIRSFPEKIDVGAVYNIRPNQKQKVGTIVPVE 134

Query: 101 KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRR 160
           +ELVFDIDM+DYD+ R+CC+G  IC  CW +MS A  +L   L +DF F+ L  VFSGRR
Sbjct: 135 RELVFDIDMSDYDNSRSCCTGKSICRWCWTWMSCAAAVLRKVLEDDFGFRYLFPVFSGRR 194

Query: 161 GIHCWVCDEAALALDGRGRSCLAEYMSVL----TANPVKKVFLTGDVLHPHLKRAKLIIE 216
           GIH WVCD+ A  +    RS L  Y++V+    + + V   F+ G  +HP ++  +  + 
Sbjct: 195 GIHLWVCDKRACKMHDDERSALVSYLTVVVPKASQHAVVADFVNGKPIHPTIQHVQATVL 254

Query: 217 D-QFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIK 275
           D  F  L     L ST E   +V        +   I     ++G  +DVE+  R +  + 
Sbjct: 255 DPAFTSLF----LNSTPENPNRVTHPKGARIVYKAIVSA-LKMGTRRDVEQ--RFLRNVP 307

Query: 276 HHQAKNSD-----RKLKYAIEEIL----LELAYPRLDIHVSKGVNHLLKSPFCVHPKTGK 326
             +    D     R L  A   ++    + L YPRLD HVS   +HLLK PFCVHP TG 
Sbjct: 308 FEEGNILDWTYVLRTLGDAATNVIAAAQILLMYPRLDEHVSTRRDHLLKLPFCVHPATGS 367

Query: 327 IC 328
           +C
Sbjct: 368 LC 369


>gi|156085138|ref|XP_001610052.1| DNA primase small subunit [Babesia bovis T2Bo]
 gi|154797304|gb|EDO06484.1| DNA primase small subunit, putative [Babesia bovis]
          Length = 350

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 127/338 (37%), Positives = 188/338 (55%), Gaps = 27/338 (7%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGN---LDNFRKREFSFTLN----GDI---YARYISYNSPN 63
           L FYY+++ P    +RWL Y       + ++RE SFT      GD+   Y R+ S+    
Sbjct: 14  LRFYYEKLCPVKDLVRWLSYEGEKPTGSLQRREISFTFQRDTGGDVSEFYMRWQSFEGHQ 73

Query: 64  ELKKDLIKR--CPQKIDLGAIYDICPKDHLQHSV--FTPKMKELVFDIDMTDYDDVRNCC 119
           +L+  L +R   P KID+GAIY+  P   +Q S   F    +ELVFDIDM DYDD+R CC
Sbjct: 74  QLQHMLSERNNVPFKIDIGAIYNK-PVTLMQLSGADFHAVERELVFDIDMNDYDDLRTCC 132

Query: 120 SGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGR 179
           +   IC KCW+++SIA +IL  +L+EDF F  ++WV+SGRRGIH W+CD  A +L    R
Sbjct: 133 TDKRICHKCWKFISIAAEILTRSLKEDFGFNEIMWVYSGRRGIHGWICDAKARSLPNEAR 192

Query: 180 SCLAEYMSVLTANPVKK-VFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKV 238
           S + +Y+ +L+A+  KK V + G   HP + RA  I    F  LL+EQ  L T+      
Sbjct: 193 SAIVDYLMLLSADSHKKRVNIFGVEDHPAVNRAFDICYRNFYDLLQEQNFLVTEAHIQSS 252

Query: 239 LGLVSNGDIRA-EIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK----------LK 287
           L  +++   +A ++ +   +      VE ++ +   ++    +   RK            
Sbjct: 253 LEYITDRFPKARQLLQRALKTKVKNSVELFNEICEELEVETPEEYRRKNTGVNINRDAFP 312

Query: 288 YAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTG 325
            A +E++L  +YPRLD  V+K V HLLK+PFC+H KTG
Sbjct: 313 VAFKELVLAFSYPRLDAAVTKDVGHLLKAPFCIHAKTG 350


>gi|167537141|ref|XP_001750240.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771230|gb|EDQ84899.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1322

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 112/229 (48%), Positives = 142/229 (62%), Gaps = 18/229 (7%)

Query: 6    DPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPN 63
            DP     +L  YY R+FPYG Y +WL YG +D   F  REFSFTL  D+Y RY S+   +
Sbjct: 871  DPTQFPLLLQQYYLRLFPYGKYFKWLSYGGVDKKEFENREFSFTLKDDVYVRYQSFADMS 930

Query: 64   ELKKDLIKRCPQKIDLGAIYDICP-----KDH--LQHSVFTPKMKELVFDIDMTDYDDVR 116
            ELK+  +      + +  +  I P     KDH  ++ S F P  KELVFDIDMTDYD++R
Sbjct: 931  ELKEGRV------VLISTLAGIVPEQEKPKDHKKIKSSEFYPVAKELVFDIDMTDYDEIR 984

Query: 117  NCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDG 176
             CCSGA IC KCW +M+ A K+LD ALREDF FQ LLWV+SGRRGIHCWVCD+ A  L  
Sbjct: 985  TCCSGAAICHKCWGFMTAAVKVLDAALREDFGFQHLLWVYSGRRGIHCWVCDKRARLLSQ 1044

Query: 177  RGRSCLAEYMSVLTA--NPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLL 223
              R  +AEY+ ++       KKV LT   LHP  +RA  I+E  F +++
Sbjct: 1045 EARGAVAEYLQLVRGGDQTAKKVSLTSP-LHPCAERACRILEPYFREVV 1092


>gi|183230675|ref|XP_649456.2| DNA primase small subunit [Entamoeba histolytica HM-1:IMSS]
 gi|169802811|gb|EAL44069.2| DNA primase small subunit, putative [Entamoeba histolytica
           HM-1:IMSS]
 gi|449709467|gb|EMD48729.1| DNA primase small subunit, putative [Entamoeba histolytica KU27]
          Length = 380

 Score =  203 bits (517), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 116/315 (36%), Positives = 176/315 (55%), Gaps = 26/315 (8%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQK 76
           YY + FP   + +W+   N      RE SFT+  + Y RY  + S  ELK+ L ++ P K
Sbjct: 14  YYDKSFPVETFYKWI-TRNKKYSDTRELSFTMFDESYIRYQHFKSSEELKRKLKEKVPIK 72

Query: 77  IDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIAC 136
            D+GA++D      L     TP ++E V DIDM +Y+DVR CC G +ICEKCW  +  A 
Sbjct: 73  FDIGAVFDKL----LIGVTNTPLLREFVIDIDMDEYNDVRYCCQGTNICEKCWTLLVAAV 128

Query: 137 KILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTA---NP 193
           ++L+  L E F F+ +L VFSGRRGIH WVCD++A+ +    R  + +Y+++  A   N 
Sbjct: 129 QVLNYILHEQFGFKHILNVFSGRRGIHIWVCDDSAMEMTDTLRMNVVQYLNLFEAKNTNS 188

Query: 194 VKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEK 253
           + + ++     H     +  I+E  F+K L+++++L + ER+++ + L+         EK
Sbjct: 189 LNESYVVIPGRHALFDDSYQILEPLFKKYLQDEQILESSERRSRFIRLIPTSKQSQCEEK 248

Query: 254 EWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHL 313
           E        D+  WD +  I+      N D K   A++ I+    YPRLDI+VS   NHL
Sbjct: 249 E--------DL-TWDYVKRIL------NDDPK---ALQRIVFTYLYPRLDINVSMKRNHL 290

Query: 314 LKSPFCVHPKTGKIC 328
           LK+PFC+HP TG IC
Sbjct: 291 LKAPFCIHPATGNIC 305


>gi|45184841|ref|NP_982559.1| AAR018Wp [Ashbya gossypii ATCC 10895]
 gi|44980450|gb|AAS50383.1| AAR018Wp [Ashbya gossypii ATCC 10895]
 gi|374105758|gb|AEY94669.1| FAAR018Wp [Ashbya gossypii FDAG1]
          Length = 436

 Score =  203 bits (517), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 120/331 (36%), Positives = 191/331 (57%), Gaps = 13/331 (3%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELK 66
           S+++M  +YY+ ++P+ P   WL +      +   RE +       Y RY S+ S  E K
Sbjct: 39  SMSDMQ-YYYQYLYPFRPIFHWLNHSPKPQRDMVNRELAMAFRSGAYKRYNSFGSVQEFK 97

Query: 67  KDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADI 124
           + + K  P + ++GA+Y+  P+D   +  +   P  KELVFDIDM DYDD R CCSGA +
Sbjct: 98  QQIQKANPDRFEIGAVYNKPPRDRDSVLKTEMKPLEKELVFDIDMDDYDDFRTCCSGAQV 157

Query: 125 CEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAE 184
           C+KCW+++ +A K+++T+L EDF  +  +WVFSGRRG HCW+ D  A +L    R  + +
Sbjct: 158 CDKCWKFIFLAMKVMNTSLIEDFGLEQFIWVFSGRRGAHCWISDPRARSLSDMQRKSVLD 217

Query: 185 YMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTK-VLGLV 242
           YM+V+    ++K        HPHL R+  I++  F + +L EQ+         + +L  +
Sbjct: 218 YMNVVRDRNLEKRISFTRPYHPHLARSLNILKPYFVDFILREQDPWQDDSAAVRLLLPAI 277

Query: 243 SNGDIRAEIEKEWTRIGPGQDV-EKWD--RLVAIIKHHQAKNSD--RKLKYAIEEILLEL 297
            +  +  +++K W +  PG+   EKW    L+A     QAK  D   +L+ A E+++L +
Sbjct: 278 QDAQLADQLKKYW-KENPGRSSEEKWKDIDLLASGMTKQAKRPDYVARLREAKEDLILAI 336

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            YP+LD+ V+K   HLLK+PFC+HP TG +C
Sbjct: 337 LYPKLDVEVTKQTIHLLKAPFCIHPATGNVC 367


>gi|410964973|ref|XP_003989027.1| PREDICTED: DNA primase small subunit [Felis catus]
          Length = 371

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/330 (36%), Positives = 180/330 (54%), Gaps = 52/330 (15%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   ETFDPAELPELLKLYYRRLFPYAQYYRWLNYGGVTKNYFQHREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           + ++L+K++ K  P KID+GA+Y                                    S
Sbjct: 62  NQSDLEKEMQKMNPYKIDIGAVY------------------------------------S 85

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
                E+ +        +L T L EDF F+  LWV+SGRRG+HCWVCDE+   L    RS
Sbjct: 86  HRSSVEQLF--------VLHTVL-EDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRS 136

Query: 181 CLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKV 238
            + EY+S++     VKK     + +HP ++++  II+  FE   L +Q++L  KE   K+
Sbjct: 137 GIVEYLSLVKGGQDVKKKVHLSEKIHPFVRKSINIIKKYFEDYALVDQDILENKESWDKI 196

Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELA 298
           L LV    I  ++++ + +      +++W+ L   I       +D+   +   EI+L+  
Sbjct: 197 LALVPET-IHEKLQQNFQK--HHNSLQRWEYLKKTISSQDNTKNDKCGPWLEWEIMLQYC 253

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +PRLDI+VSKG+NHLLKSPF VHPKTG+I 
Sbjct: 254 FPRLDINVSKGINHLLKSPFSVHPKTGRIS 283


>gi|342181877|emb|CCC91356.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 417

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/302 (38%), Positives = 168/302 (55%), Gaps = 21/302 (6%)

Query: 41  KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKM 100
           +REF FTL GDI+ R+ SY S  EL+++LI+  P+KID+GA+Y+I P    Q     P  
Sbjct: 71  RREFCFTLLGDIFTRFRSYASAAELRRELIRCFPEKIDVGAVYNIRPNQKQQVGNIVPVE 130

Query: 101 KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRR 160
           +ELVFDIDM+DYD+ R+CC+G  IC  CW +M+ A  +L T L EDF F+ +L VFSGRR
Sbjct: 131 RELVFDIDMSDYDNSRSCCTGKSICRWCWTWMTCAAGVLRTVLEEDFGFRYILPVFSGRR 190

Query: 161 GIHCWVCDEAALALDGRGRSCLAEYMSVL----TANPVKKVFLTGDVLHPHLKRAKL-II 215
           GIH WVCD+ A  +    R+ L  Y++V+    + + V   F++G  +HP ++  +  ++
Sbjct: 191 GIHIWVCDKKACKMHDDERTALVSYLTVVVPKTSRHAVVADFVSGRPIHPTIQNIQTKVL 250

Query: 216 EDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIK 275
           +  F  L      L T       +       +  E      ++G  +DVE+  R +  + 
Sbjct: 251 DPAFTALF-----LDTSPDNPNRVTHPKGARVVYESIVAALKMGSRRDVEQ--RFLQNVV 303

Query: 276 HHQAKNSD-----RKLKYAIEEIL----LELAYPRLDIHVSKGVNHLLKSPFCVHPKTGK 326
             +    D     R L  A   ++    + L YPRLD HVS   +HLLK PFCVHP TG 
Sbjct: 304 FQEGNILDWSYVLRSLGDAATNVIAASQILLMYPRLDEHVSTRRDHLLKLPFCVHPATGS 363

Query: 327 IC 328
           +C
Sbjct: 364 LC 365


>gi|239791371|dbj|BAH72160.1| ACYPI008656 [Acyrthosiphon pisum]
          Length = 183

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/169 (55%), Positives = 124/169 (73%), Gaps = 2/169 (1%)

Query: 8   ESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNEL 65
           +   + L  YYK++FPY  + +WL YGN+  +NF  REFSFTL+ DIY RY S+N+  E 
Sbjct: 4   DQFPDYLNVYYKKLFPYSQFHKWLSYGNVKPENFLNREFSFTLHEDIYIRYQSFNTLQEF 63

Query: 66  KKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
           + ++  RCP KID+GA++++ PK    +  F    KELV DIDMTDYD VR CCSGA++C
Sbjct: 64  ETEIQNRCPFKIDIGAVFNMSPKVCRNYPQFHALEKELVIDIDMTDYDQVRTCCSGAEVC 123

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALAL 174
           +KCWR+M IA KIL+ A+R+DF ++ LLWVFSGRRGIHCW+CDE+A  L
Sbjct: 124 QKCWRFMVIAVKILERAIRDDFGWKHLLWVFSGRRGIHCWICDESARKL 172


>gi|84994302|ref|XP_951873.1| DNA primase small subunit [Theileria annulata strain Ankara]
 gi|65302034|emb|CAI74141.1| DNA primase small subunit, putative [Theileria annulata]
          Length = 397

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/332 (37%), Positives = 177/332 (53%), Gaps = 23/332 (6%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLN-GD------IYARYISYNSPNELK 66
           L FYYK   P    +RW+ Y +    ++RE S TL+ GD      IY R+ ++ S   + 
Sbjct: 14  LRFYYKNFCPIKDLVRWIGYEDPSILKRREISLTLHRGDTTNATEIYLRWQTFESFESVF 73

Query: 67  KDLIKR--CPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADI 124
           + L      P K D+GAIY            F P  +E+VFDIDM DYD+ R CCS   +
Sbjct: 74  ETLCNSDSVPFKFDIGAIYSNKISLMQLSGDFRPVEREIVFDIDMDDYDEFRTCCSDKKV 133

Query: 125 CEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAE 184
           C KCWRY+ IA +++   L+EDF F  +LWV+SGRRGIHCWVCD+ A  L   GR  + E
Sbjct: 134 CNKCWRYIKIAVELITITLKEDFGFVNVLWVYSGRRGIHCWVCDKTARQLPTEGRISIIE 193

Query: 185 YMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLV-- 242
           Y+++++    KKV L     HP + RA  I    F+ LL EQ   S K     +L  V  
Sbjct: 194 YLNLISDGFAKKVNLYAIDKHPLVLRAFHICYRNFKHLLAEQNFFSHKTHMKTLLDYVPE 253

Query: 243 --SN--GDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYA-----IEEI 293
             SN    I   IE    R      V+ ++ +  ++   + ++   K++         EI
Sbjct: 254 RHSNVKRSINNCIENSQKRY---NSVDFFNSICDMLNLTRPEDYVGKVEAGDFPGFFMEI 310

Query: 294 LLELAYPRLDIHVSKGVNHLLKSPFCVHPKTG 325
           ++  +YPRLD++V+K + HLLKSPFCVH KTG
Sbjct: 311 IIAFSYPRLDVNVTKDMGHLLKSPFCVHAKTG 342


>gi|452822577|gb|EME29595.1| DNA primase small subunit [Galdieria sulphuraria]
          Length = 403

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 189/336 (56%), Gaps = 32/336 (9%)

Query: 17  YYKRIFPYGPYLRWLFYG---NLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRC 73
           YY+  FP    +RWL Y    N   F +RE SFTL+ +IY RY S+ S  +L+K L+++ 
Sbjct: 6   YYQEFFPVDLIVRWLSYSFQRNKQLFERRELSFTLDNEIYVRYQSFESAEDLRKVLVQKL 65

Query: 74  PQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCS--GADICEKCWRY 131
           P KID+GA+Y+  P +    ++F P  +EL+FDID+TDY+DV    S    D+C+  W  
Sbjct: 66  PVKIDIGAVYNYPPCNQSLVTLFAPLERELIFDIDLTDYEDVAIMKSEDEVDLCDNNWYL 125

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTA 191
           ++ A ++LD ALR+DF FQ +LWV+SGRRG+H W+CDE A  L    R  + EY++V   
Sbjct: 126 IAAAVELLDKALRDDFGFQHILWVYSGRRGVHGWICDERARKLSDECRDSILEYLTVRLP 185

Query: 192 NPVKKVFL----------TGDVLH-------PHLKRAKLIIEDQFEK-LLEEQELLSTKE 233
           + ++++ +          + D L        P LKR+   +   F K +++  +  S + 
Sbjct: 186 SALREISVKREKSNVSVCSDDSLRQWNTLSDPFLKRSFDYLYPLFLKYVVQSPQFFSDEN 245

Query: 234 RQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEE- 292
              K L L+ +     +IE+       G D+  W+R+  ++K  +     +   Y +   
Sbjct: 246 HFKKYLSLIPSH-YALQIERLIESNTVGMDL--WERVEEMLKEPK-----KSCFYGLVVC 297

Query: 293 ILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           ++    YPRLD +VS+ +NHLLKSPFC+HPKT ++C
Sbjct: 298 LVFHYLYPRLDANVSRHMNHLLKSPFCLHPKTQRVC 333


>gi|157869281|ref|XP_001683192.1| putative DNA primase small subunit [Leishmania major strain
           Friedlin]
 gi|68224076|emb|CAJ04048.1| putative DNA primase small subunit [Leishmania major strain
           Friedlin]
          Length = 451

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 166/300 (55%), Gaps = 15/300 (5%)

Query: 41  KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKM 100
           +REF FTL GDI+ R+ SY S  EL+ +L++  P+KID+GA+Y+I P      +   P  
Sbjct: 102 RREFCFTLIGDIFTRFRSYRSSEELRAELVRCFPEKIDVGAVYNIRPNQKQGLANVFPVE 161

Query: 101 KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRR 160
           +ELVFDIDM+DYD+VR+CCSG  IC  CW +MS A  +L T LR+DF F+ +L VFSGRR
Sbjct: 162 RELVFDIDMSDYDNVRSCCSGKSICSYCWAWMSCAAHVLHTVLRDDFGFKYILPVFSGRR 221

Query: 161 GIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTG----DVLHPHLKRAKLIIE 216
           GIH WVCD  A  +    R+ L  Y++V+    ++   +       ++HP ++    ++ 
Sbjct: 222 GIHLWVCDRRARRMTNDERTALVGYLTVVAPKTLRSTIVADLANHRLIHPTIRH---VLR 278

Query: 217 DQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKH 276
            Q ++      + S+ +    +    +   I  +      ++G    + ++ + V   + 
Sbjct: 279 TQLDRAFTSLFVASSSDNPNNIQHHPTAAYIVHDATSAVLKLGRRDALNRFQQHVHFQQG 338

Query: 277 H--------QAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +        +A  S+++    +  + L L YPRLD HVS   +HLLK PFCVHP T  +C
Sbjct: 339 NVLDWATYLRALGSEQEATDILHAVQLLLMYPRLDEHVSTRRDHLLKLPFCVHPGTASLC 398


>gi|340054574|emb|CCC48874.1| putative DNA primase small subunit [Trypanosoma vivax Y486]
          Length = 408

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 117/302 (38%), Positives = 166/302 (54%), Gaps = 21/302 (6%)

Query: 41  KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKM 100
           +REF FTL GDI+ R+ SY+S  EL+++LI+  P+KID+GA+Y I P          P  
Sbjct: 62  RREFCFTLIGDIFTRFRSYSSAAELRRELIRCYPEKIDVGAVYTIRPNQKQSVGTILPVE 121

Query: 101 KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRR 160
           +ELVFDIDM+DYD VR+CCSG  IC+ CW ++S A  +L T L++DF F+ +L VFSGRR
Sbjct: 122 RELVFDIDMSDYDSVRSCCSGKSICQVCWLWVSCAADVLRTVLQDDFGFRYILPVFSGRR 181

Query: 161 GIHCWVCDEAALALDGRGRSCLAEYMS-VLTANPVKKV---FLTGDVLHPHLKRA-KLII 215
           GIH WVCD+ A  +    R+ L  Y++ VL   P + V    ++G  +HP ++     +I
Sbjct: 182 GIHLWVCDKRACKMHDDERAALVGYLAVVLPKAPRQAVIGDIVSGRPIHPTIRHVLTTVI 241

Query: 216 EDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIK 275
           E  F  L      L++       +       +  +      ++G  +DVE+  R +  + 
Sbjct: 242 EPAFSAL-----FLNSSPANPNSVAHPKGARVVYDAIVSVLKMGSRRDVEQ--RFLQNVH 294

Query: 276 HHQAKNSD-----RKLKYAIEEILLE----LAYPRLDIHVSKGVNHLLKSPFCVHPKTGK 326
                  D     R L  A   + +     L YPRLD HVS   +HLLK PFCVHP TG 
Sbjct: 295 FEDGNILDWAYIIRALGDAAPSVTMGAQILLMYPRLDEHVSTRRDHLLKLPFCVHPATGS 354

Query: 327 IC 328
           +C
Sbjct: 355 LC 356


>gi|146086480|ref|XP_001465558.1| putative DNA primase small subunit [Leishmania infantum JPCM5]
 gi|134069657|emb|CAM67981.1| putative DNA primase small subunit [Leishmania infantum JPCM5]
          Length = 450

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 165/300 (55%), Gaps = 15/300 (5%)

Query: 41  KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKM 100
           +REF FTL GDI+ R+ SY S  EL+ +L++  P+KID+GA+Y+I P      +   P  
Sbjct: 101 RREFCFTLIGDIFTRFRSYRSAEELRAELVRCFPEKIDVGAVYNIRPNQKQGLANVFPVE 160

Query: 101 KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRR 160
           +ELVFDIDM+DYD+VR+CCSG  IC  CW +MS A  +L T LR+DF F+ +L VFSGRR
Sbjct: 161 RELVFDIDMSDYDNVRSCCSGKSICSYCWAWMSCAAHVLHTLLRDDFGFKYILPVFSGRR 220

Query: 161 GIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTG----DVLHPHLKRAKLIIE 216
           GIH WVCD  A  +    R+ L  Y++V+    ++   +       ++HP ++    ++ 
Sbjct: 221 GIHLWVCDRRARRMTNDERTALVGYLTVVAPKTLRSTIVADLANHRLIHPTIRH---VLR 277

Query: 217 DQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKH 276
            Q ++      + S+ +    +        I  +      ++G    + ++ + V   + 
Sbjct: 278 TQLDRAFTALFVASSSDNPNNIQHHPKAAYIVHDATSAVLKLGRRDALNRFQQHVHFQQG 337

Query: 277 H--------QAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +        +A  S+++    +  + L L YPRLD HVS   +HLLK PFCVHP T  +C
Sbjct: 338 NVLDWATYLRALGSEQEATDILHAVQLLLMYPRLDEHVSTRRDHLLKLPFCVHPGTASLC 397


>gi|393224504|gb|EJD32869.1| prim-pol domain-containing protein [Auricularia delicata TFB-10046
           SS5]
          Length = 385

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/329 (33%), Positives = 178/329 (54%), Gaps = 14/329 (4%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           L  YY  ++P+     WL +G      F KREF+  L+     R   + +  +L+K L +
Sbjct: 19  LRLYYTHVYPFKALFLWLNHGVAPTSLFTKREFAMKLSNGRLIRRQFFQTVEQLQKRLCQ 78

Query: 72  RCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRY 131
               + ++GAIYD  P      S      KE V DID+T YDD+R CC+G  IC +CW +
Sbjct: 79  CGATRFEIGAIYDDPPVAQSSFSAPQRLRKEFVIDIDITAYDDIRTCCTGKRICRRCWGF 138

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL-- 189
           ++ A  +L+ +LR  F ++ +LWVFSG+RG+HCWV D++A+ L    R     ++ VL  
Sbjct: 139 LAAAINVLEASLRLQFGYKSILWVFSGQRGVHCWVSDDSAIELKDAHRHAALGWLDVLKN 198

Query: 190 -----TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLVS 243
                T+  +++       LHP ++ A   I   F +L L  Q+  + ++R   +LG +S
Sbjct: 199 AKGLKTSPAIRRSADLNSPLHPMIRFATSKIPCNFNQLILTTQDAFAWEDRWRCLLGKLS 258

Query: 244 NGDI-RAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK---LKYAIEEILLELAY 299
            G + ++ +   W        ++KWD ++A  K      S  +   L+ ++E+++L+  Y
Sbjct: 259 GGSLFQSSLAAAWEAEPERCSLDKWDDILAEAKDLPGYVSRPRRIGLQKSMEDMVLQCMY 318

Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           PRLD+ VS+   HLLK+PFCVHP TG+IC
Sbjct: 319 PRLDVQVSRRSEHLLKAPFCVHPDTGRIC 347


>gi|398015175|ref|XP_003860777.1| DNA primase small subunit, putative [Leishmania donovani]
 gi|322499000|emb|CBZ34072.1| DNA primase small subunit, putative [Leishmania donovani]
          Length = 450

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 165/300 (55%), Gaps = 15/300 (5%)

Query: 41  KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKM 100
           +REF FTL GDI+ R+ SY S  EL+ +L++  P+KID+GA+Y+I P      +   P  
Sbjct: 101 RREFCFTLIGDIFTRFRSYRSAEELRAELVRCFPEKIDVGAVYNIRPNQKQGLANVFPVE 160

Query: 101 KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRR 160
           +ELVFDIDM+DYD+VR+CCSG  IC  CW +MS A  +L T LR+DF F+ +L VFSGRR
Sbjct: 161 RELVFDIDMSDYDNVRSCCSGKSICSYCWAWMSCAAHVLHTLLRDDFGFKYILPVFSGRR 220

Query: 161 GIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTG----DVLHPHLKRAKLIIE 216
           GIH WVCD  A  +    R+ L  Y++V+    ++   +       ++HP ++    ++ 
Sbjct: 221 GIHLWVCDRRARRMTNDERTALVGYLTVVAPKTLRSTIVADLANHRLIHPTIRH---VLR 277

Query: 217 DQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKH 276
            Q ++      + S+ +    +        I  +      ++G    + ++ + V   + 
Sbjct: 278 TQLDRAFTALFVASSSDNPNNIQHHPKAAYIVHDATSAVLKLGRRDALNRFQQHVHFQQG 337

Query: 277 H--------QAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +        +A  S+++    +  + L L YPRLD HVS   +HLLK PFCVHP T  +C
Sbjct: 338 NVLDWATYLRALGSEQEATDILHAVQLLLMYPRLDEHVSTRRDHLLKLPFCVHPGTASLC 397


>gi|401422014|ref|XP_003875495.1| putative DNA primase small subunit [Leishmania mexicana
           MHOM/GT/2001/U1103]
 gi|322491733|emb|CBZ27006.1| putative DNA primase small subunit [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 451

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 165/300 (55%), Gaps = 15/300 (5%)

Query: 41  KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKM 100
           +REF FTL G+I+ R+ SY S  EL+ +L++  P+KID+GA+Y+I P      +   P  
Sbjct: 102 RREFCFTLMGEIFTRFRSYRSAEELRAELVRCFPEKIDVGAVYNIRPNQKQGLANVFPVE 161

Query: 101 KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRR 160
           +ELVFDIDM+DYD+VR+CCSG +IC  CW +MS A  +L T LR+DF F+ +L VFSGRR
Sbjct: 162 RELVFDIDMSDYDNVRSCCSGKNICSYCWAWMSCAAHVLHTVLRDDFGFKYILPVFSGRR 221

Query: 161 GIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTG----DVLHPHLKRAKLIIE 216
           GIH WVCD  A  +    R+ L  Y++V+    ++   +       ++HP ++    ++ 
Sbjct: 222 GIHLWVCDRRARLMTNDERAALVGYLTVVAPKTLRSTVVADLANHRLIHPTIRH---VLR 278

Query: 217 DQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKH 276
            Q ++      + S+ +    +        I  +      ++G    + ++ + V   + 
Sbjct: 279 TQLDRAFTALFVASSSDNPNNIQHHPKAAYIVHDATSAVLKLGRRDTLNRFQQHVHFQQG 338

Query: 277 H--------QAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +         A  S+++    +  + L L YPRLD HVS   +HLLK PFCVHP T  +C
Sbjct: 339 NVLDWPTYLHALGSEQEATDILHAVQLLLMYPRLDEHVSTRRDHLLKLPFCVHPGTASLC 398


>gi|255644544|gb|ACU22775.1| unknown [Glycine max]
          Length = 242

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 99/227 (43%), Positives = 137/227 (60%), Gaps = 16/227 (7%)

Query: 1   MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGN--------LDNFRKREFSFTLNGDI 52
           M  + +P+     L  YY ++FP+   +RW+ YGN             +REFSFTL  D+
Sbjct: 1   MIPQQEPDFNLNHLKLYYGKLFPFADLVRWVSYGNDGKHPGCDQSYIGRREFSFTLENDV 60

Query: 53  YARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHS------VFTPKMKELVFD 106
           Y R+ S+++  EL+  + ++ P KID+G +Y + P     ++      VF P  +EL+FD
Sbjct: 61  YLRFQSFHNALELENSIKEKTPVKIDIGPVYTVDPAKRNAYAQSGDNNVFAPVERELIFD 120

Query: 107 IDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWV 166
           IDM+DYDDVR CCSGAD+C  CW  M+IA K++DTALR+DF F+ +LWV+SGRRG+HCWV
Sbjct: 121 IDMSDYDDVRYCCSGADVCLVCWPLMTIAIKVIDTALRDDFGFKHILWVYSGRRGVHCWV 180

Query: 167 CDEAALALDGRGRSCLAEYMSVLTA--NPVKKVFLTGDVLHPHLKRA 211
           CD  A  L    R  +A+Y  V     N  KKV L G  LHP L  +
Sbjct: 181 CDGKARKLTNEQRGAIADYFRVYKGNENSHKKVSLMGAALHPFLATS 227


>gi|407042306|gb|EKE41262.1| DNA primase, eukaryotic-type, small subunit protein [Entamoeba
           nuttalli P19]
          Length = 375

 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 114/315 (36%), Positives = 172/315 (54%), Gaps = 31/315 (9%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQK 76
           YY + FP   + +W+   N      RE SFT+  + Y RY  + S  ELK+ L ++ P K
Sbjct: 14  YYDKSFPVETFYKWI-TRNKRYSDTRELSFTMFDESYIRYQHFKSSEELKRKLKEKVPIK 72

Query: 77  IDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIAC 136
            D+GA++D      L     TP ++E V DIDM +Y+DVR CC G +ICEKCW  +  A 
Sbjct: 73  FDIGAVFDKL----LIGVTNTPLLREFVIDIDMDEYNDVRYCCQGTNICEKCWTLLVAAV 128

Query: 137 KILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTA---NP 193
           ++L+  L E F F+ +L VFSGRRGIH WVCD++A+ +    R  + +Y+++  A   N 
Sbjct: 129 QVLNYILHEQFGFKHILNVFSGRRGIHIWVCDDSAMEMTDTLRMNVVQYLNLFEAKNTNS 188

Query: 194 VKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEK 253
           + + ++     H     +  I+E  F+K L ++++L + ER+++ + L+         EK
Sbjct: 189 LNESYVVIPGRHALFDDSYQILEPLFKKYLHDEQILESSERRSRFIRLIPTSKQSQCEEK 248

Query: 254 EWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHL 313
           E        D+  WD            + D K   A++ I+    YPRLDI+VS   NHL
Sbjct: 249 E--------DL-SWDY-----------SDDPK---ALQRIVFTYLYPRLDINVSMKRNHL 285

Query: 314 LKSPFCVHPKTGKIC 328
           LK+PFC+HP TG IC
Sbjct: 286 LKAPFCIHPATGNIC 300


>gi|145552023|ref|XP_001461688.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429523|emb|CAK94315.1| unnamed protein product [Paramecium tetraurelia]
          Length = 410

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/338 (36%), Positives = 184/338 (54%), Gaps = 36/338 (10%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGN-----LDNFRKREFSF--TLNGD-IYARYISYNSPNEL 65
           L FYYK +FP    + WL Y       L  F +REFSF  +++G+  Y RY  + +   L
Sbjct: 13  LHFYYKHLFPIQMIVDWLSYAKDNQPELRYFSRREFSFERSIDGETFYQRYQQFQNAYGL 72

Query: 66  KKDLI--KRCPQ-----KIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           +K L+  K+  Q     K D+GA++D  PK   +        KE+V DIDM  YD+VR C
Sbjct: 73  QKFLLDNKQNDQTSTLIKYDIGAVFDKLPK---KGEKLKAMEKEIVIDIDMDAYDEVRTC 129

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           C GA ICEKCW+++ +AC IL  AL +DF  + +L V+SGRRGIH WVCD          
Sbjct: 130 CQGAKICEKCWKFLQVACDILRPALFQDFGLEHILAVYSGRRGIHLWVCDSHIRKSTNEV 189

Query: 179 RSCLAEYMSVLTANPVKKVFLTG------DVLHPHLKRAKLIIEDQFEK-LLEEQELLST 231
           RS +  Y+++ T N   +  +        + LHP ++RA  I +  F++ +L +Q  L  
Sbjct: 190 RSAIIGYLNINTGNADAEEIIREVKQEKVEKLHPSIQRAYFIAQQFFKQIILIDQNSLKI 249

Query: 232 KERQTKVLGLVSNGDI-RAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAI 290
           +  + K+L ++    I   ++EK    I     +  WD +        +++S+R L+ A 
Sbjct: 250 ENVKKKILTILKQTKILNPKLEKSIQEINDSSQI--WDLIC-------SQDSER-LEIAK 299

Query: 291 EEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            +I+L   YPRLD HVS  +NHLLK PF +HPKT ++C
Sbjct: 300 LQIILMCLYPRLDAHVSTTINHLLKGPFSIHPKTQRVC 337


>gi|167376204|ref|XP_001733902.1| DNA primase small subunit [Entamoeba dispar SAW760]
 gi|165904821|gb|EDR29967.1| DNA primase small subunit, putative [Entamoeba dispar SAW760]
          Length = 380

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 111/315 (35%), Positives = 171/315 (54%), Gaps = 26/315 (8%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQK 76
           YY + FP   + +W+   N      RE SFT++ + Y RY  + S  ELK+ L ++ P K
Sbjct: 14  YYDKSFPVETFYKWI-TRNKKYSDTRELSFTMSDESYIRYQHFKSNEELKRKLKEKVPIK 72

Query: 77  IDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIAC 136
            D+GA++D      L     TP ++E + DIDM +Y+DVR CC G +IC+KCW  +  A 
Sbjct: 73  FDIGAVFDKL----LIGVTNTPLLREFIIDIDMDEYNDVRYCCQGTNICKKCWTLLVAAV 128

Query: 137 KILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTA---NP 193
           ++L+  L E F F  +L VFSGRRGIH WVCD+ A+ +    R  + +Y+++  A   N 
Sbjct: 129 QVLNYILHEQFGFNHILNVFSGRRGIHIWVCDDIAMEMTDTLRMNIVQYLNLFEAKHTNS 188

Query: 194 VKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEK 253
             + ++     H     +  I+E  F K L+++++    ER+++ + L+         EK
Sbjct: 189 QNESYIVIPGRHSLFDDSYQILEPLFNKYLQDEQIFECSERRSRFIRLIPTSKQSQCDEK 248

Query: 254 EWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHL 313
           E        D+  WD +  I+      + D K   A++ I+    YPRLDI+VS   NHL
Sbjct: 249 E--------DL-TWDYVKKIL------SDDPK---ALQRIVFTYLYPRLDINVSMKRNHL 290

Query: 314 LKSPFCVHPKTGKIC 328
           LK+PFC+HP TG +C
Sbjct: 291 LKAPFCIHPATGNVC 305


>gi|19920257|gb|AAM08673.1|AC116971_7 TC3_70K14.7 [Trypanosoma cruzi]
          Length = 394

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 118/299 (39%), Positives = 166/299 (55%), Gaps = 24/299 (8%)

Query: 41  KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKM 100
           +REF FTL GDI++R+ SY++  EL++DLI+  P+KID+GA+Y I P      S   P  
Sbjct: 104 RREFCFTLLGDIFSRFRSYSTSAELRRDLIRCFPEKIDVGAVYTIRPNQKQSASSILPLE 163

Query: 101 KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRR 160
           +ELVFDIDM+DYD VR+CCSG  IC  CW +M+ A  +L   L EDF F+ +L VFSGRR
Sbjct: 164 RELVFDIDMSDYDSVRSCCSGKSICSYCWTWMACAAHVLRRILEEDFGFRYILPVFSGRR 223

Query: 161 GIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKV----FLTGDVLHPHLKRAKL-II 215
           GIH WVCD  A  L    RS L  Y++V+     +++    F+ G  +HP ++R +  +I
Sbjct: 224 GIHLWVCDRRACKLHDDERSALVGYLTVVVPKASRQIVVADFVNGKPIHPTIRRVQRDVI 283

Query: 216 EDQFEKL-LEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAII 274
           +  F +L LE  E         K  G+V +  + A       ++G  +DVE+  R    +
Sbjct: 284 DPAFTRLFLESSESNPNSVLHPKGAGVVYSAIVAA------LKMGSRRDVEQ--RFTQQV 335

Query: 275 KHHQAKNSD-----RKLKYAIEEIL----LELAYPRLDIHVSKGVNHLLKSPFC-VHPK 323
              +    D     R L  A E +     + L YPRLD HV+   +HLLK  +  V PK
Sbjct: 336 PFEEGNVLDWAYVIRALGDAAENVTAAAQILLMYPRLDEHVTTRRDHLLKLEYSIVSPK 394


>gi|154337447|ref|XP_001564956.1| putative DNA primase small subunit [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134061995|emb|CAM45081.1| putative DNA primase small subunit [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 450

 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 105/300 (35%), Positives = 165/300 (55%), Gaps = 15/300 (5%)

Query: 41  KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKM 100
           +REF FTL GDI+ R+ SY S  EL+ +L++  P+KID+GA+Y+I P      +   P  
Sbjct: 101 RREFCFTLIGDIFTRFRSYRSAEELRAELLRCFPEKIDVGAVYNIRPNQKQGLANVFPVE 160

Query: 101 KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRR 160
           +ELVFDIDM+DYD+VR+CC+G  +C  CW +MS A  +L T LR+DF F+ +L VFSGRR
Sbjct: 161 RELVFDIDMSDYDNVRSCCTGKSVCAYCWAWMSCAAHVLHTVLRDDFGFKYVLPVFSGRR 220

Query: 161 GIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTG----DVLHPHLKRAKLIIE 216
           GIH WVCD  A  +    R+ L  Y++V+    ++   +       ++HP ++    I+ 
Sbjct: 221 GIHLWVCDRRARLMTNDERTALVGYLAVVAPKTLRSTIVADLANHRLVHPTIRH---ILR 277

Query: 217 DQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIK- 275
            Q ++      + S+ +    +        I  +      ++G    + ++ + +   + 
Sbjct: 278 TQVDRAFTGLFVTSSSDNPNNIQHHTKAACIVHDATLAVLKLGRRDALNRFQQHLHFQQG 337

Query: 276 -------HHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
                  + +A  S+++    +  + L L YPRLD HVS   +HLLK PFCVHP T  +C
Sbjct: 338 SVLDWSVYLRALGSEQEATDILHAVQLLLLYPRLDEHVSTRRDHLLKLPFCVHPGTSYLC 397


>gi|440299961|gb|ELP92486.1| DNA primase small subunit, putative [Entamoeba invadens IP1]
          Length = 370

 Score =  193 bits (491), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 111/330 (33%), Positives = 173/330 (52%), Gaps = 27/330 (8%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFY-GNLDNFRKREFSFTLNGDIYARYISYNS 61
           +K + +   E    YY+  FP   + RW+   G   +   RE SFT     Y R+  ++S
Sbjct: 4   EKSETDPTYEQRKAYYQSCFPTDDFYRWVTRDGKFSD--TRELSFTQPDSTYLRFQHFSS 61

Query: 62  PNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
             E +K L  +CP K D+GAIYD      L  +   PK++E V DIDM +Y+DVR CC G
Sbjct: 62  STEFQKRLNMKCPLKFDIGAIYDKL----LTGTGGVPKLREFVIDIDMDEYNDVRYCCKG 117

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
           A +C KCW  +  A  +L+  L   F F+ +L VFSGRRG+H WVCD +A+ +    R+ 
Sbjct: 118 ATVCPKCWPLLVSASNLLNFVLVTHFGFKHVLTVFSGRRGLHFWVCDRSAMEMSDLTRNY 177

Query: 182 LAEYMSVLTANPVK---KVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKV 238
           + +Y+++  A  V    + F+     H     A  I+E  F K   +QE+   + R+ + 
Sbjct: 178 VVQYLNLFEAKNVNEKGESFVIVKRQHDLFDTAFDILEPIFGKYCTDQEIFCNQNRRDRF 237

Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELA 298
           L L+ +   R+ ++++   +        W+ +  +I               +++I+    
Sbjct: 238 LRLIGDAKSRSLLQEKGDNL-------TWEVVRKVI----------TTPLDLQKIVFTYL 280

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           YPRLDI+VS  +NHLLK+PFC+HP TGK+C
Sbjct: 281 YPRLDINVSTKLNHLLKAPFCIHPGTGKVC 310


>gi|402579843|gb|EJW73794.1| DNA primase, partial [Wuchereria bancrofti]
          Length = 181

 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 123/181 (67%), Gaps = 2/181 (1%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           + LP YY+R+FP+ P  +WL YG     +F+ RE +F    D +ARY S+    + +++L
Sbjct: 1   QTLPEYYRRLFPFEPLCKWLAYGEDLQASFQMRELAFVFEDDRHARYRSFEDSADFEREL 60

Query: 70  IKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
            K  PQKID+GA+Y+  PKDH + + F P  +EL+FDID+TDYDD+R CCS A +C KCW
Sbjct: 61  CKANPQKIDIGAVYNYKPKDHKKFADFHPVERELIFDIDLTDYDDIRTCCSKAKVCRKCW 120

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           R++SIA  +L+  L+  F F+  LWVFSGRRGIHCWV D AA  L   GR  + EY+S++
Sbjct: 121 RWISIAVGVLNYLLQRHFGFKHCLWVFSGRRGIHCWVADAAARKLQNAGRMAVVEYLSLV 180

Query: 190 T 190
           T
Sbjct: 181 T 181


>gi|313218612|emb|CBY43098.1| unnamed protein product [Oikopleura dioica]
          Length = 315

 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 114/254 (44%), Positives = 149/254 (58%), Gaps = 13/254 (5%)

Query: 77  IDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIAC 136
           ID+GAIY+   K  L    F  + +ELVFDID++DYDDVR CC  A IC+KCW  MSI  
Sbjct: 7   IDIGAIYNYSCKHRLSPD-FKEEQRELVFDIDISDYDDVRTCCQEARICQKCWPLMSICV 65

Query: 137 KILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKK 196
           K+L+  L+  F F+ +L+VFSGRRGIHCWV DE A  L+G  R  LA Y  V TA  +  
Sbjct: 66  KVLEETLKTAFGFEQILFVFSGRRGIHCWVFDEEARKLNGAERFALAHYCQV-TAQQIG- 123

Query: 197 VFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWT 256
              T   LH H++ A  I +  +++ LE Q+LL T+E     L  V   D    I+ EW 
Sbjct: 124 ---TSHRLHTHIQNALKITDLYWDEYLETQDLLGTEEGIDSFLKYVKLDD---SIKNEWK 177

Query: 257 RIGPGQD--VEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLL 314
                 D  +E+W       K  Q+K    +L   IE I + + YPR+DI V++G NHLL
Sbjct: 178 EQMLKYDTTMERWSIFQQKRKEAQSKKYRDRL--FIERIKIAVTYPRIDIKVTEGFNHLL 235

Query: 315 KSPFCVHPKTGKIC 328
           K+PF VHPKTGK+C
Sbjct: 236 KAPFSVHPKTGKVC 249


>gi|389585468|dbj|GAB68199.1| DNA primase small subunit [Plasmodium cynomolgi strain B]
          Length = 388

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/315 (38%), Positives = 177/315 (56%), Gaps = 37/315 (11%)

Query: 39  FRKREFSFTLNGD------IYARYISYNSPNELKKDLIKR-CPQKIDLGAIYD--ICPKD 89
           F KREFSFT   +      IY R++S+N+  E K  L+    P K D+GA+Y+  +  KD
Sbjct: 18  FAKREFSFTCKKNDQGKEEIYMRWLSFNNSEEFKDKLLSNFVPIKFDIGAVYNYPVYQKD 77

Query: 90  HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDF 149
             +  +F P  KEL+FDIDM DYDD+R CC+         ++++IA  +LDTALREDF  
Sbjct: 78  Q-KGDIFHPVQKELIFDIDMNDYDDIRTCCNDK-------KFLTIAIVLLDTALREDFAL 129

Query: 150 QLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPV--KKVFLTGDVLHPH 207
           Q +LWV+SGRRGIHCWVCDE+        R+ LA+Y+++L+ +    KKV + G   +P 
Sbjct: 130 QNILWVYSGRRGIHCWVCDESCRHYTTDARAALADYLNILSGSDTKKKKVSIWGKEKYPM 189

Query: 208 LKRAKLIIEDQFEKLLEEQELLSTKERQ-TKVLGLVSNGDIR-------AEIE--KEWTR 257
           ++RA  I    FE L+EEQ+          K++  +     +       A+I   KE+  
Sbjct: 190 IERAFEICYKYFEILMEEQDFFKKGSPHVNKIIDYLPYATAKNVDPVKSAKINEFKEFID 249

Query: 258 IGPGQDVEKWDRLVAII------KHHQAKNSDRKL--KYAIEEILLELAYPRLDIHVSKG 309
                  E +++L +I        + + K+S+  L     I+E++    YPRLDI+VSK 
Sbjct: 250 NNNFNSKELFEKLSSIYGFLTPGNYFKKKDSNANLIIPSYIKELVFHFTYPRLDINVSKE 309

Query: 310 VNHLLKSPFCVHPKT 324
           +NHLLKSPFC+H  T
Sbjct: 310 INHLLKSPFCIHNGT 324


>gi|242003560|ref|XP_002422773.1| DNA primase small subunit, putative [Pediculus humanus corporis]
 gi|212505631|gb|EEB10035.1| DNA primase small subunit, putative [Pediculus humanus corporis]
          Length = 233

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/206 (50%), Positives = 138/206 (66%), Gaps = 9/206 (4%)

Query: 71  KRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWR 130
           K+ P KID+GAI+       +  S+  P  +ELVFDID+TDYDDVRNCC GADIC KCW+
Sbjct: 7   KKVPFKIDIGAIFSFHRHRQVASSL-VPVARELVFDIDLTDYDDVRNCCQGADICLKCWK 65

Query: 131 YMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL- 189
           +M+IACKI+D ALREDF FQ LLWVFSGRRGIHCWVCD +A  L  + RS +A+Y+ ++ 
Sbjct: 66  FMAIACKIIDLALREDFGFQNLLWVFSGRRGIHCWVCDVSAKILSSQERSAVADYLQLIS 125

Query: 190 -TANPVKKVFL-TGDVLHPHLKRAKLIIEDQ-FEKLLEEQELLSTKERQTKVLGLVSNGD 246
            ++N  KKV L   D LHP ++RA  II ++ FE  +E Q LL   E   K+L L+ +  
Sbjct: 126 GSSNCAKKVNLPISDKLHPSIRRASNIIRNKFFEVCIEGQNLLEKPESLKKLLSLIWDEK 185

Query: 247 IRAEIEKEWTRIGPGQDV-EKWDRLV 271
           ++  I K   +I    D+ EKW+ +V
Sbjct: 186 LKNRISK---KINSLTDIKEKWNAIV 208


>gi|237831887|ref|XP_002365241.1| DNA primase small subunit, putative [Toxoplasma gondii ME49]
 gi|211962905|gb|EEA98100.1| DNA primase small subunit, putative [Toxoplasma gondii ME49]
          Length = 509

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/253 (42%), Positives = 145/253 (57%), Gaps = 26/253 (10%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLDN-----------FRKREFSFTL-------NGD-IYA 54
           L FYY ++FP+G   +WL Y N  +           F KRE  FT        N D  + 
Sbjct: 20  LLFYYDKLFPFGELSKWLTYKNSPHLPESEANDPLFFAKREVCFTCRKPGGLDNADEFFL 79

Query: 55  RYISYNSPNELK---KDLIKRCPQKIDLGAIYDI-CPKDHLQHSVFTPKMKELVFDIDMT 110
           R+ S+ +  E+K   KD+      K D GA+Y +   +    HS F P+ KELVFDIDM 
Sbjct: 80  RWQSFRTVEEMKEKLKDMSSLVCFKFDFGAVYSVPVSEKDSSHSAFRPEQKELVFDIDMN 139

Query: 111 DYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEA 170
           DYDD+R CC+   +C+KCW ++ +A  +LD ALREDF F+ +LWVFSGRRG+HCWVCD +
Sbjct: 140 DYDDIRTCCTDKRVCQKCWTFLEVAMSLLDAALREDFGFENILWVFSGRRGVHCWVCDSS 199

Query: 171 ALALDGRGRSCLAEYMSVLTAN--PVKKVFLTGD-VLHPHLKRAKLIIEDQFEKLLEEQE 227
           A  L   GR+ L EY+++ T     VKKV L G  V  P + RA  +   QF++LLEEQ+
Sbjct: 200 ARLLPSDGRAQLCEYLNICTGTDQQVKKVTLRGGRVQPPSVDRAFCLAYRQFQRLLEEQD 259

Query: 228 LLSTKERQTKVLG 240
             ++  R   V G
Sbjct: 260 FFASNARALPVSG 272



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 36/45 (80%)

Query: 284 RKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +++   ++EI+L  +YPRLDI+VSK + HLLKSPFC+H  TG++C
Sbjct: 372 KQIPSFVKEIVLAYSYPRLDINVSKDIGHLLKSPFCIHHGTGRVC 416


>gi|294875162|ref|XP_002767220.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239868737|gb|EEQ99937.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 314

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 130/203 (64%), Gaps = 14/203 (6%)

Query: 41  KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSV-FTPK 99
           +REFSFTL GDIY RY+S++  ++ +K L+ R P KID+GA+++I P  + Q    F P+
Sbjct: 5   RREFSFTLPGDIYCRYLSFHGQHDFRKALLDRVPDKIDIGAVFNIPPTHYQQFGGGFQPQ 64

Query: 100 MKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGR 159
            +ELVFDIDM DYD+VRNCC G+ IC+ CW +++ A +IL+ ALR+DF F+ +L+ FSGR
Sbjct: 65  QRELVFDIDMDDYDEVRNCCKGSSICKLCWTFIACAVRILNRALRDDFGFKHILFAFSGR 124

Query: 160 RGIHCWVCDEAALALDGRGRSCLAEYMSVLTAN--PVKKVFLTGDVLHPHLKRA------ 211
           RG+HCWVCDE A  L    RS +AEY+ +L       K +  +    HPH++R       
Sbjct: 125 RGVHCWVCDETARKLSNEQRSAVAEYLQLLNGGRYGCKHIRSSAQQRHPHVRRGIDICRK 184

Query: 212 -----KLIIEDQFEKLLEEQELL 229
                + ++E     LLE Q LL
Sbjct: 185 YLLMPEALLEHAQCGLLEGQRLL 207


>gi|71031526|ref|XP_765405.1| DNA primase small subunit [Theileria parva strain Muguga]
 gi|68352361|gb|EAN33122.1| DNA primase small subunit, putative [Theileria parva]
          Length = 386

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/293 (37%), Positives = 152/293 (51%), Gaps = 12/293 (4%)

Query: 47  TLNGDIYARYISYNSPNELKKDLIKR--CPQKIDLGAIYDICPKDHLQHSVFTPKMKELV 104
           +L   IYA   ++ S     + L      P K D+GAIY            F P  +E+V
Sbjct: 61  SLRNPIYASTTTFESFENGFETLCNSDSVPFKFDIGAIYSKKISLMQLSGDFRPVEREIV 120

Query: 105 FDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHC 164
           FDIDM DYD+ R CCS   +C KCWRY+ IA +++   L+EDF F  +LWV+SGRRGIHC
Sbjct: 121 FDIDMDDYDEFRTCCSEKKVCNKCWRYIKIAVELITKTLKEDFGFVDILWVYSGRRGIHC 180

Query: 165 WVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLE 224
           WVCD AA  L   GR  + EY+++++    KKV L     HP + RA  I    F  LL 
Sbjct: 181 WVCDRAARQLPAEGRISIIEYLNLISDGFAKKVNLYAVDKHPLVLRAFHICYRNFNHLLS 240

Query: 225 EQELLSTKERQTKVLGLVSN--GDIRAEI-------EKEWTRIGPGQDVEKWDRLVAIIK 275
           EQ     K     +L  V     ++R  +       +K ++ +     +     LV   +
Sbjct: 241 EQNFFYHKHHIKSLLDYVPEKYSNVRKSLNNCLENSQKRYSSVDFFNSICDMLNLVR-PE 299

Query: 276 HHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            +  K           EI++  +YPRLD++V+K + HLLKSPFCVH KTG+IC
Sbjct: 300 DYIGKVESGDFPGFFMEIVIAFSYPRLDVNVTKDMGHLLKSPFCVHAKTGRIC 352


>gi|71991583|ref|NP_497283.2| Protein T24C4.5 [Caenorhabditis elegans]
 gi|351062076|emb|CCD69959.1| Protein T24C4.5 [Caenorhabditis elegans]
          Length = 318

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/190 (44%), Positives = 122/190 (64%), Gaps = 2/190 (1%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSP 62
           Y+   L + LP YYK  FP  P+ +WL YG    D F +REF+F L  D++ RY SYN  
Sbjct: 3   YNSIRLPQDLPIYYKNFFPVKPFTKWLCYGQNYGDYFNRREFTFILADDVHIRYRSYNDE 62

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGA 122
           +   K L    P+K+D+GA+Y+  P ++ +++ +    +ELVFDID+TDYD VRNCC  A
Sbjct: 63  HSFVKALSSTNPEKLDIGAVYNHEPINNKRYTDYQAVERELVFDIDLTDYDPVRNCCKDA 122

Query: 123 DICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCL 182
            +C KCW++M +A +ILD  L E F+F+  +WVFSGRRG+HCWV D+ A  L+   RS +
Sbjct: 123 TVCPKCWKFMVLAVRILDFQLEEMFNFKARMWVFSGRRGVHCWVGDKKARMLNNNQRSAI 182

Query: 183 AEYMSVLTAN 192
           A  +++   N
Sbjct: 183 ATRLNLFKKN 192


>gi|167394575|ref|XP_001741017.1| DNA primase small subunit [Entamoeba dispar SAW760]
 gi|165894599|gb|EDR22538.1| DNA primase small subunit, putative [Entamoeba dispar SAW760]
          Length = 352

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/322 (35%), Positives = 172/322 (53%), Gaps = 25/322 (7%)

Query: 10  LTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDL 69
           L++ L  YY++ FP   + +W+      + + RE +       + RY+ +NS  EL   L
Sbjct: 4   LSQSLCLYYQKFFPSKLFYQWITRDGKYS-QTRELAAFKTDSFFNRYLHFNSSYELSNYL 62

Query: 70  IKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
           I+  P++I++G I+D      L + + T KM+E V DID+ DYDDVR CCS   +CEKCW
Sbjct: 63  IRYVPERIEIGPIFD----HLLFNKINTAKMREFVIDIDIDDYDDVRYCCSSTQVCEKCW 118

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
             MS A K++    +E F  + +L VFSGRRGIH W+CDE AL  + + R+ + +Y ++ 
Sbjct: 119 VLMSCAAKVIHHIFKEQFGMKHILNVFSGRRGIHFWICDEQALNFNEQMRTYITKYFNLF 178

Query: 190 T---ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGD 246
           T    N      +     +P       I+E  FE   E+QE+  T++R+ ++L L+   +
Sbjct: 179 TNQCTNKDNHPIIDIHEEYPLYDEVYQILEPYFEDYCEKQEIFKTEQRKEQLLKLLPQNE 238

Query: 247 IRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHV 306
           I              Q   K D L  II     KN+    K  +  I+    YPR+DI+V
Sbjct: 239 I-------------SQVTGKLDNLSWIILKEHFKNN----KLILISIVFTYLYPRIDINV 281

Query: 307 SKGVNHLLKSPFCVHPKTGKIC 328
           S  +NHLLK+PFC+HP T K+C
Sbjct: 282 SVQLNHLLKAPFCIHPSTNKVC 303


>gi|340507513|gb|EGR33459.1| hypothetical protein IMG5_052000 [Ichthyophthirius multifiliis]
          Length = 353

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 91/210 (43%), Positives = 131/210 (62%), Gaps = 10/210 (4%)

Query: 6   DPESLTEMLPFYYKRIFPYGPYLRWLFYG-NLDNFRKREFSFTLNGDIYARYISYNSPNE 64
           D  SL E    YY++ FP   +  WL Y  + + F+KREFSFT  GD+Y RYI +NS   
Sbjct: 25  DRNSLQE----YYQQNFPINQFYDWLCYSESQEYFQKREFSFTFPGDVYWRYIFFNSKEH 80

Query: 65  LKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADI 124
           L + LI++ P+KID+GA+++   +            KE V DIDMTDYD++R CC+GA+I
Sbjct: 81  LLQTLIEKVPEKIDIGAVFN--KQGQKGDMNLKAIEKEFVIDIDMTDYDNIRTCCTGANI 138

Query: 125 CEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAE 184
           CEKCW++M  AC+++   L EDFDF+ +LWV+SGRRGIH W+CD        + RSC+ E
Sbjct: 139 CEKCWKFMKYACELISKTL-EDFDFKHVLWVYSGRRGIHAWICDSNVRKSSDKIRSCIIE 197

Query: 185 YMSVLTANPVKKVFLTGDVLHPHLKRAKLI 214
           +M+++  N     +L   ++  +LK   LI
Sbjct: 198 HMNLIIDNDKSDHYLKSQLV--NLKSHYLI 225


>gi|66808481|ref|XP_637963.1| DNA polymerase alpha primase subunit [Dictyostelium discoideum AX4]
 gi|60466406|gb|EAL64461.1| DNA polymerase alpha primase subunit [Dictyostelium discoideum AX4]
          Length = 409

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 177/345 (51%), Gaps = 50/345 (14%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDN--------FRKREFSFTLN---GDIYARYISYNSPNEL 65
           YY ++FP+     WL   +++         F +REFS  +N        R  S+N   +L
Sbjct: 25  YYDKLFPFDLLYDWLTINSINEKEEDKKRAFERREFSVRINKVSSSFVIRNKSFNRVEDL 84

Query: 66  KK--------DLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRN 117
           K+        D +   P+++D+G I    P      S + P  KELVFDID+ DY+ +R 
Sbjct: 85  KEFLKGRQNIDGVYEVPERLDIGPICSWEPSKKATVSDYQPVSKELVFDIDVDDYNPIRV 144

Query: 118 CCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGR 177
           CCS   +CEKCW +++++ + +D  LRE F FQ +++VFSGRRG+H WV D AA  L   
Sbjct: 145 CCSSTSLCEKCWGFLAVSAEFIDNYLRECFGFQQIMYVFSGRRGLHIWVSDRAAQHLTRE 204

Query: 178 GRSCLAEYMSV-LTANPVKKVFLTGDVLHPHLKRA-KLIIEDQFEK-LLEEQELLSTKER 234
            R+ +  ++ V L+ N +           P LKR+   I+   FEK ++EEQ++ + +++
Sbjct: 205 NRASILNHIRVELSQNQI-----------PILKRSFDQILLPHFEKCIIEEQQIFTNEKQ 253

Query: 235 QTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNS-----------D 283
           +   L L+    I  + +     + P +D+EK    +  I+     NS           D
Sbjct: 254 RKNFLSLLP---ISYKRQDRKITLTPSEDIEK---KLKEIQDENLSNSEIWFAVKSYLED 307

Query: 284 RKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
             LK  +  ++     PR+D  V+ G++HLLKSPFC+HP T K+C
Sbjct: 308 NNLKEHLYNLVFHYTMPRIDEPVTIGLDHLLKSPFCIHPDTKKLC 352


>gi|123398916|ref|XP_001301371.1| DNA primase, eukaryotic-type, small subunit family protein
           [Trichomonas vaginalis G3]
 gi|121882544|gb|EAX88441.1| DNA primase, eukaryotic-type, small subunit, putative family
           protein [Trichomonas vaginalis G3]
          Length = 362

 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 108/322 (33%), Positives = 164/322 (50%), Gaps = 22/322 (6%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           E+L  YY   FP     +W+ YG  +    RE  F  + + + R+ + +    L++  + 
Sbjct: 7   ELLRKYYSDKFPLEDIKQWISYGGNEPLENRECGFFFDDEKFMRWQTVDV---LRRLALA 63

Query: 72  RCPQKIDLGAIYD--ICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             PQ++++G +Y   I  +       F PK KEL+FD+D  D+ D++ CC  ++ICEKCW
Sbjct: 64  NPPQRMEIGPVYTHPIAIRQQQSPGEFRPKSKELIFDLDADDFKDIKCCCGDSEICEKCW 123

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
            YM  A   L T LR +F F+ +  VFSGRRGIH WVCD+ A  L    R  +  Y+++ 
Sbjct: 124 PYMHCAIDCLTTILRTNFGFKKIFPVFSGRRGIHIWVCDKKARELSAAVRDKIVHYLNLK 183

Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELL---STKERQTKVLGLVSNGD 246
               +    L      P LK+     E  F K+   Q +     T ER  K+LG  +   
Sbjct: 184 EITEMDNFLLNAS---PLLKQMLPSCEKYFCKIYRTQNIFKNQKTSERAYKLLGSETIKQ 240

Query: 247 IRAEIEKEWTRIGPGQDVEKWDRLVAI-IKHHQAKNSDRKLKYAIEEILLELAYPRLDIH 305
           I   I+        G D E+W+ +  +  K      SD+      + +++  ++PRLD +
Sbjct: 241 INKIIDSTH-----GTDEERWESVKTMAFKGKTFAESDQ-----YKRLIVFYSFPRLDEN 290

Query: 306 VSKGVNHLLKSPFCVHPKTGKI 327
           V+KG+NHLLKSPF VHPK+G I
Sbjct: 291 VTKGMNHLLKSPFSVHPKSGFI 312


>gi|224071467|ref|XP_002303474.1| predicted protein [Populus trichocarpa]
 gi|222840906|gb|EEE78453.1| predicted protein [Populus trichocarpa]
          Length = 286

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 89/204 (43%), Positives = 131/204 (64%), Gaps = 9/204 (4%)

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTA 191
           M++A K++DTALR+DF F  +LWV+SGRRG+HCWVCD  A  L    R+ +A+Y  V   
Sbjct: 1   MTVAIKVIDTALRDDFGFNHILWVYSGRRGVHCWVCDGKARRLTNEQRAAVADYFRVYKG 60

Query: 192 --NPVKKVFLTGDVLHPHLKRA-KLIIEDQFE-KLLEEQELLSTKERQTKVLGLVSNGDI 247
             N  KKV LTG  LHP L R+   ++E  FE KLL  Q + ST++R  K+L ++ +   
Sbjct: 61  NENSSKKVSLTGPALHPFLVRSYSEVLERFFETKLLLSQNIFSTEDRYEKILEMIPDKSA 120

Query: 248 RAEIEKEW-TRIGPGQDVE--KWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDI 304
            +E+  +W T+ G  +D+   +W++L   ++    K   + L+  +EEI+    YPRLD+
Sbjct: 121 TSELRGKWQTKKGSKEDINVVRWEQLKNTLQ--SGKYKAQGLRRCVEEIVFSFTYPRLDM 178

Query: 305 HVSKGVNHLLKSPFCVHPKTGKIC 328
            VS+ +NHLLK+PFCVHPKTG++C
Sbjct: 179 EVSRHMNHLLKAPFCVHPKTGRVC 202


>gi|56912227|ref|NP_001008768.1| DNA primase, p49 subunit [Rattus norvegicus]
 gi|56789492|gb|AAH88272.1| DNA primase, p49 subunit [Rattus norvegicus]
          Length = 296

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/209 (43%), Positives = 133/209 (63%), Gaps = 5/209 (2%)

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    RS
Sbjct: 3   SADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRS 62

Query: 181 CLAEYMSVLT-ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKV 238
            + EY+S++   + VKK     + +HP ++++  II+  FE+  L +Q++L  +E   K+
Sbjct: 63  GIVEYLSLIKGGHDVKKKVHLNEKVHPFVRKSINIIKKYFEEYALVDQDILENQENWDKI 122

Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELA 298
           L LV    +  E++K + R       ++W+ L  +    Q   +D+   +   EI+L+  
Sbjct: 123 LALVPET-VHDELQKGFQRFHSSP--QRWEYLRKVASAPQNTKNDKCGPWLEWEIMLQYC 179

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           +PRLDI+VSKGVNHLLKSPF VHPKTG+I
Sbjct: 180 FPRLDINVSKGVNHLLKSPFSVHPKTGRI 208


>gi|47182664|emb|CAG14143.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 145

 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 82/144 (56%), Positives = 102/144 (70%), Gaps = 4/144 (2%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSP 62
           +D  SL ++LP YY+R+FP+  Y RWL YG L  + F+ REFSFTL  DIY RY S+N+ 
Sbjct: 1   FDSASLPDLLPLYYRRLFPFSQYYRWLSYGGLQKNYFQNREFSFTLKDDIYVRYQSFNTQ 60

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           NEL+K++ K  P KID+GA+Y   P  H  ++   F    KELVFDIDMTDYDDVR+CCS
Sbjct: 61  NELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKSGTFQALEKELVFDIDMTDYDDVRSCCS 120

Query: 121 GADICEKCWRYMSIACKILDTALR 144
            ADIC KCW  M+IA +ILD ALR
Sbjct: 121 AADICSKCWTLMTIAIRILDRALR 144


>gi|449018240|dbj|BAM81642.1| DNA primase, small subunit [Cyanidioschyzon merolae strain 10D]
          Length = 442

 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 169/351 (48%), Gaps = 36/351 (10%)

Query: 9   SLTEMLPFYYKRIFPYGPYLRWLF----YGNLDNFRKREFSFTLN----GDIYARYISYN 60
           S  E L  YY   FP     +WL         D   +REFS   +    G+   RY++Y 
Sbjct: 44  SRAESLQRYYAEWFPATVLAQWLAGRPGAEGEDLLSRREFSCEADDGSGGEKRIRYLAYQ 103

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDHLQH-SVFTPKMKELVFDIDMTDYDDV---- 115
               L+ + ++  P + D+G +YD  P+D  +  +   P  +ELVFD+D+  Y+ V    
Sbjct: 104 DAAGLRAEFLRLLPLRYDIGPVYDASPRDRYRRINKLEPVERELVFDVDLDVYESVSALG 163

Query: 116 RNCCSGADI---------CEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWV 166
           ++  +GA           C   W ++  A  +++ ALREDF ++ +LWVFSGRRG+H WV
Sbjct: 164 QSEPAGAAANFADDPLRACADNWLFVEAAVTVMEQALREDFGYEHVLWVFSGRRGVHAWV 223

Query: 167 CDEAALALDGRGRSCLAEYM------SVLTANPVKKVF--LTGDVLHPHLKRAKLIIEDQ 218
           CD  A  L    R+ + EY+      +V   + +   F       LHP L+RA  I+   
Sbjct: 224 CDTRARQLTDEARAAIVEYLQYRGISAVSNRSSLSSTFNRTATTFLHPALRRAATILLPF 283

Query: 219 FEKLLEEQELLSTKE-RQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHH 277
            ++ LEE+  +   E     VLG+  +  +R  + +   R    +      RL   ++  
Sbjct: 284 MDRFLEERPSIWADEGAMDTVLGMCPDAQVRETLRRFIQRSHTRESAAAVWRLA--LEQL 341

Query: 278 QAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            +K  D     A   I+L L YPRLD++V++  NHLLK PF +HPKT  IC
Sbjct: 342 DSKRLDTD---AAMHIVLGLLYPRLDVNVTRQRNHLLKGPFSIHPKTNAIC 389


>gi|328872667|gb|EGG21034.1| DNA polymerase alpha primase subunit [Dictyostelium fasciculatum]
          Length = 458

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 170/351 (48%), Gaps = 58/351 (16%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDN-------FRKREFSFTLNG---------DIYARYISYN 60
           Y   IFP+     WL   +          F KREFS +  G         + + R+ S+ 
Sbjct: 64  YLDTIFPWDILYEWLTASHSSRGEDEVVYFSKREFSVSSKGINYKTGKEQEFWNRHKSFT 123

Query: 61  SPNELKKDLIKR---------CPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTD 111
           +  ELK   + R          P+K+D+GA+Y+  P        + P  +ELVFDID  D
Sbjct: 124 NIEELKPFAMGRIDEVRQKADVPEKLDIGAVYNHEPSRMGAFMDYRPVCRELVFDIDSND 183

Query: 112 YDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAA 171
           YD+VR CC G  +C KCWR ++ A ++L   LR+ F F+  + +FSG RG+H WVCD  A
Sbjct: 184 YDEVRTCCKGNTLCPKCWRLLAAAIRMLQVGLRDSFGFEHFMPIFSGGRGVHLWVCDPNA 243

Query: 172 LALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQF-----EKLLEEQ 226
           + +    R  +  Y  +   +PV     + D +HP    AK + ++ F     + LLE+Q
Sbjct: 244 MMMTEDMRRAVLGYFRLSDQSPV-----SPDDMHP---IAKDLFDNIFLPLFQDHLLEDQ 295

Query: 227 ELLSTKERQTKVLGL------VSNGDIRAEIEKEWTRI-------GPGQDVEKWDRLVAI 273
           ++LS  ++   +  +      +  GD + ++E     I             EKW  +   
Sbjct: 296 QILSDDKQIEAIRSIMPATFKIKTGDAKKKVEFSPRDIINQILDKSSLTVQEKWKSIYDT 355

Query: 274 IKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKT 324
                 KNS  +L Y   +I++  + PRLD  V+ GVNHLLKSPFC+HP+T
Sbjct: 356 FD----KNSAFELIY---KIVIHFSAPRLDEAVTVGVNHLLKSPFCIHPRT 399


>gi|399216400|emb|CCF73088.1| unnamed protein product [Babesia microti strain RI]
          Length = 364

 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 116/331 (35%), Positives = 175/331 (52%), Gaps = 19/331 (5%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLDNFRKREFS---FTLNGDIYARYISYNSPNELKKDLI 70
           L FYY+ +FP     +WL Y N  N    + +   F L  ++   Y   +  ++   D+ 
Sbjct: 15  LRFYYQNLFPLPEIYKWLTYRNDPNQPTSDSNDPQFCLRREMSFVYKRQDHSDD--SDIF 72

Query: 71  KRCPQKIDLGAIYDIC-PKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
            R    ++LGA+Y++   +  + +  FT + +ELVFDID+ DYDD+R CC   +IC+KCW
Sbjct: 73  TRWIPLVNLGAVYNLAISQMSINNKKFTQEQRELVFDIDINDYDDIRTCCKEKNICDKCW 132

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           RYMSI  + L   L  DF F  LL+VFSGRRGIHCWVCD  A  L    R  + EY++++
Sbjct: 133 RYMSIGVRFLYETLTVDFSFNNLLFVFSGRRGIHCWVCDTGARRLPQEARLAIVEYLTLV 192

Query: 190 TANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDI 247
           T   V  K+V L     HP + RA      +F  LL EQ     K   + +L  + +   
Sbjct: 193 TGAEVIKKRVNLYTKDSHPLVARAFHYCYMEFHSLLIEQNYFIDKHHHSVLLEYIPDVQK 252

Query: 248 RAEIEKEWTRIGPGQDVEKWDRLV------AIIKHHQAKNSDRKLKYAI----EEILLEL 297
            AE+    +R      VE ++ +         I++ +  N      ++I    +EI++  
Sbjct: 253 FAELRASISRPF-NSSVELFNVMCNQLGIPNPIEYRENINKSHLKVHSIPGFFKEIIIHY 311

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           ++ RLD +V+K + HLLKSPFC+H  TGK+C
Sbjct: 312 SFIRLDCNVTKDMGHLLKSPFCIHIGTGKVC 342


>gi|67483744|ref|XP_657092.1| DNA primase small subunit [Entamoeba histolytica HM-1:IMSS]
 gi|56474331|gb|EAL51706.1| DNA primase small subunit, putative [Entamoeba histolytica
           HM-1:IMSS]
 gi|449705258|gb|EMD45341.1| DNA primase small subunit, putative [Entamoeba histolytica KU27]
          Length = 372

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 162/314 (51%), Gaps = 27/314 (8%)

Query: 19  KRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKID 78
           ++ FP   + +W+   N    + RE +       + RY+ +NS  +L   L +  P++I+
Sbjct: 33  EKFFPSKLFYQWV-TRNGKYSQTRELAAFKTNSFFNRYLHFNSSYDLSNYLSRYVPERIE 91

Query: 79  LGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKI 138
           +G I+D      L +   T  M+E V DID+ DYDD+R CCS   +C+KCW  MS A K+
Sbjct: 92  IGPIFD----HLLFNKTNTATMREFVIDIDIDDYDDIRYCCSSTQVCKKCWILMSCAAKV 147

Query: 139 LDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLT---ANPVK 195
           +    +E F  + +L VFSGRRGIH W+CDE AL  + + R+ + +Y S+ T    N   
Sbjct: 148 IHHIFQEQFGMKHILNVFSGRRGIHFWICDEQALHFNEQMRTYITKYFSLFTNQCTNKDN 207

Query: 196 KVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEW 255
              +     +P       I+E  FE   E+QE+   ++R+ ++L L+   +         
Sbjct: 208 HPIIDIHEEYPLYNEVYQILEPYFEDYCEKQEIFKIEQRKEQLLNLLPQNET-------- 259

Query: 256 TRIGPGQDVEKWDRLV-AIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLL 314
                 Q + K++ L   ++K H   N     K  +  I+    YPR+D +VS  +NHLL
Sbjct: 260 -----SQVIRKFNNLSWTLLKEHFKNN-----KTTLMSIVFTYLYPRIDTNVSVQLNHLL 309

Query: 315 KSPFCVHPKTGKIC 328
           K+PFC+HP T K+C
Sbjct: 310 KAPFCIHPSTNKVC 323


>gi|57207862|dbj|BAD86530.1| DNA primase [Coprinopsis cinerea]
          Length = 243

 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 88/231 (38%), Positives = 129/231 (55%), Gaps = 7/231 (3%)

Query: 101 KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRR 160
           KELVFDID+TDYD VR CCS A IC++CW ++S A K+LD ++RE F ++ LLWV+SGRR
Sbjct: 2   KELVFDIDLTDYDLVRTCCSDAAICKRCWTFISAAVKVLDRSIREHFGYEKLLWVYSGRR 61

Query: 161 GIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVK-----KVFLTGDVLHPHLKRAKLII 215
           GIH W+ D  A+ L    R  +  +M+V+     +      V     VL P L+ A   +
Sbjct: 62  GIHLWISDVEAMELSDAQRKAIVGWMNVVNVGSRETSKKLNVRTASKVLPPPLQDALEEL 121

Query: 216 EDQFEKL-LEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAII 274
              F  L L +Q+  +++     +L  V    +   + ++W+        EKW  L A  
Sbjct: 122 VPIFSDLILGDQDCFASENGWETLLEFVPIPQVAERLRRKWSNDPDRSSDEKWADLKAEA 181

Query: 275 KHHQAKNSDR-KLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKT 324
           +     +  R +L +A+E+I+L   YPR+D  VSK  NHLLKSPFC+   +
Sbjct: 182 REFDKNSPQRTQLMHAMEDIILHYTYPRIDAEVSKHRNHLLKSPFCIQSNS 232


>gi|290977316|ref|XP_002671384.1| predicted protein [Naegleria gruberi]
 gi|284084952|gb|EFC38640.1| predicted protein [Naegleria gruberi]
          Length = 358

 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/298 (34%), Positives = 165/298 (55%), Gaps = 33/298 (11%)

Query: 52  IYARYISYNSPNELKKDLIK--RCPQKIDLGAIYDI-CPKDHLQHSVFTPKMKELVFDID 108
           I++RY S  +  +LK+ + K    P K+D+G +Y++   K +   +V  P  KE   DID
Sbjct: 18  IFSRYKSIKNATDLKEQVTKYSNVPVKLDIGPVYNLPVAKKNQNQTVLIPVEKEYCIDID 77

Query: 109 MTDYDDVRNC-CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVC 167
           ++DYDDVR C C+G   C++CWR M+ A +ILD  L + F  + L+WV+SGRRGIHCW  
Sbjct: 78  ISDYDDVRFCGCTGGKYCKQCWRLMNCAMEILDHLLVDVFGTKHLIWVYSGRRGIHCWAS 137

Query: 168 DEAALALDGRGRSCLAEYMSVLTANPV------KKVFLTGDVLHPHLKRAKLIIEDQFEK 221
           DE    ++  GRS ++ ++ +  ++ +      ++V LTG+  HP      ++     + 
Sbjct: 138 DELLKKMNNEGRSSISRFIHIYQSSSIAGEKQSRRVNLTGNA-HPSFDIDSIVFTTCEKY 196

Query: 222 LLE---------EQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDV--EKWDRL 270
            +E         + EL+  ++    +L L+   +++  I++       G D+  +  D+L
Sbjct: 197 FIEIFINDMGIFDDELI-MQQSIPYLLNLIYISEVKTMIQEILESGKSGTDIYSQIRDKL 255

Query: 271 VAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +           D+K K+ + EI+    YPRLD++VSKG NHLLKSPFCVHP TG IC
Sbjct: 256 L----------RDKKNKHFLWEIVYSFVYPRLDVNVSKGFNHLLKSPFCVHPDTGNIC 303


>gi|281207330|gb|EFA81513.1| DNA polymerase alpha primase subunit [Polysphondylium pallidum
           PN500]
          Length = 483

 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 166/354 (46%), Gaps = 57/354 (16%)

Query: 17  YYKRIFPYGPYLRWLFY--------GNLDNFRKREFSFT--------------------- 47
           YY   FP+     WL +        G  + F +REFS +                     
Sbjct: 71  YYDEKFPWDLLYEWLSFNHFGDSSDGQSEYFGRREFSVSYTRPDKQIVLRNRSSPDVNNI 130

Query: 48  --LNGDIYARYISYNSPNELKKDLI----KRCPQKIDLGAIYDICPKDHLQHSVFTPKMK 101
             L  D+        +  E+K+  I    +    K+D+G +Y+  P      + ++P  +
Sbjct: 131 KLLINDLLPATTVVGASGEVKRKTIGGSGRLVYDKLDIGPVYNSEPIKKDSVTSYSPVER 190

Query: 102 ELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRG 161
           ELVFDID+ DYD+VR CC G  +C KCW  +++A   L   + E F F+  L+VFSG RG
Sbjct: 191 ELVFDIDINDYDEVRACCKGQTLCSKCWGLLALAADYLTYQINECFGFEQFLYVFSGGRG 250

Query: 162 IHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK 221
           +H W+ D++A+ L    R  L  ++         ++  + D LHP ++      E   E 
Sbjct: 251 LHIWISDKSAVTLTYEMRKSLVSFL---------RMDHSSDYLHPQIEFFLKYFE---EH 298

Query: 222 LLEEQELLSTKERQTKVLGLV--SNGDIRAEIEKEWTRI-----GPGQDVEKWDRLVAII 274
           ++E+Q LLS +++  + L     S G  +  I +   R+         DVEKW   +AI 
Sbjct: 299 MIEDQLLLSDEKQLKQFLEQFPESYGKKKINIRESVERVLEENSEVSSDVEKW---MAIK 355

Query: 275 KHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
                   +  L+  I  +++   +PR+D  V+ G NHLLKSPFC+HP+T K+C
Sbjct: 356 ASLATLKENIDLQEIIFRVVMYYTHPRIDEPVTIGFNHLLKSPFCIHPRTKKLC 409


>gi|405977813|gb|EKC42247.1| Uncharacterized protein C4orf14-like protein [Crassostrea gigas]
          Length = 820

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/187 (42%), Positives = 111/187 (59%), Gaps = 34/187 (18%)

Query: 145 EDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTA--NPVKKVFLTGD 202
           EDF F+  LWV+SGRRG+HCWVCDE A  L   GR+ +AEY+S++    N  KK+ L   
Sbjct: 4   EDFGFEHRLWVYSGRRGVHCWVCDETARKLSQNGRTAVAEYLSLVKGGENQNKKISLDTS 63

Query: 203 VLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPG 261
            LHP +  +  I++ +F E  +++Q+ L  +E+Q KVL L+++ +I              
Sbjct: 64  TLHPFISHSLEIVKARFDEYAVKKQDFLGDEEKQKKVLSLITDENI-------------- 109

Query: 262 QDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVH 321
                              N  +  KY +EEI+L+  YPRLD++VSKGVNHLLKSPFCVH
Sbjct: 110 -----------------LYNKSKGGKYVLEEIMLQYCYPRLDVNVSKGVNHLLKSPFCVH 152

Query: 322 PKTGKIC 328
           PKTG++C
Sbjct: 153 PKTGRVC 159


>gi|378755144|gb|EHY65171.1| hypothetical protein NERG_01617 [Nematocida sp. 1 ERTm2]
          Length = 284

 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 80/181 (44%), Positives = 108/181 (59%), Gaps = 15/181 (8%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
            +L  YY+ IFP     +WL Y      + REFSFTL  DIY RYI+ N+ +EL   +  
Sbjct: 8   NLLGIYYRSIFPMDAIAKWLRY-----IKTREFSFTLQNDIYIRYITVNTADELAVRMAV 62

Query: 72  RCPQKIDLGAIYDICPKDHLQHSVFTPKM---KELVFDIDMTDYDDVRNCCSGADICEKC 128
             PQK+D+G +Y      H   +V T  M   KELVFDID+TDY  +R CCS  D+C+KC
Sbjct: 63  DVPQKLDIGGVYL-----HKPAAVTTENMCMIKELVFDIDLTDY--IRACCSDKDMCDKC 115

Query: 129 WRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSV 188
              +  A ++LD  LR  F F  +L+VFSG RG+HCWV D  A+ L  R R+ + +Y+S+
Sbjct: 116 MPLIKCAVEVLDNILRNVFGFCHILFVFSGGRGVHCWVSDAIAMTLTDRDRANIVDYISM 175

Query: 189 L 189
           L
Sbjct: 176 L 176



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 26/30 (86%)

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +P+LD +VS+   HLLKSPFC+HP+TG++C
Sbjct: 211 FPKLDANVSRQTKHLLKSPFCIHPRTGRVC 240


>gi|330794619|ref|XP_003285375.1| hypothetical protein DICPUDRAFT_76324 [Dictyostelium purpureum]
 gi|325084645|gb|EGC38068.1| hypothetical protein DICPUDRAFT_76324 [Dictyostelium purpureum]
          Length = 420

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 109/356 (30%), Positives = 178/356 (50%), Gaps = 66/356 (18%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDN-------------FRKREFSFTLNGD--IYARYISYNS 61
           +Y  +FP+     WL   +                F +REFS  + G+     R  S+  
Sbjct: 25  FYDELFPFTLLHEWLTINHTTTTNNQDFKEEVQKAFERREFSVRVIGEKVFTIRNKSFTK 84

Query: 62  PNELKKDLIKR-------------CPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDID 108
              LK+ L  R              P ++D+G +Y   P      + + P  +ELVFDID
Sbjct: 85  VEHLKEFLKGRNTTNQQTGATSIDLPIRLDIGPVYSWEPSKMSTVTDYYPVSRELVFDID 144

Query: 109 MTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCD 168
           + DY+D+R CCS   IC KCW ++S+A K LD  LR+ F F+ +++VFSGRRG+HCWV D
Sbjct: 145 IDDYNDIRACCSNTGICHKCWGFLSVAAKFLDHYLRDCFGFEQIMFVFSGRRGLHCWVSD 204

Query: 169 EAALALDGRGRSCLAEYM-SVLTANPVKKVFLTGDVLHPHLKRA--KLIIEDQFEKLLEE 225
            +AL L    R  +  ++ + +TAN +           P LK +  K  +    + ++EE
Sbjct: 205 RSALFLQKENRQSIINHIRNEITANQL-----------PVLKYSYDKFFLPFFEDHVVEE 253

Query: 226 QELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK 285
           QEL S +++   +L L+       +I+++   I P ++++      A ++  +   +DR+
Sbjct: 254 QELFSNQKQCDTLLSLIP-----IQIKRDKQIITPLENIK------AKLEEIKNTVTDRE 302

Query: 286 LKYAIE-------------EILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           + +AI+             +I+     PR+D  V+ G+NHLLK+PFC+HP T K+C
Sbjct: 303 IWFAIKKYLEDNNLREYLYQIVFTYTMPRIDEPVTIGMNHLLKAPFCIHPDTKKLC 358


>gi|387597212|gb|EIJ94832.1| hypothetical protein NEPG_00356 [Nematocida parisii ERTm1]
          Length = 284

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 105/175 (60%), Gaps = 9/175 (5%)

Query: 13  MLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKR 72
           +L  YY+ +FP    +RWL Y      + REFSFTL  +IY RYI+ N+  EL   L+  
Sbjct: 9   LLRIYYQSLFPVYDIMRWLRY-----VKTREFSFTLMNEIYIRYITVNTAEELGIRLVTD 63

Query: 73  CPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYM 132
            PQK+D+G +Y   P     ++     +KELVFDID+TDY   R CC+  D+CE C+  +
Sbjct: 64  TPQKLDIGGVYVHKPAAVTSNNACM--IKELVFDIDLTDYS--RKCCTDKDMCELCFPLI 119

Query: 133 SIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMS 187
             A ++L+  L+  F F+ +L+VFSG RG+HCWV D  AL L  + R  + EY++
Sbjct: 120 KCAVEVLENILKNVFGFKHILFVFSGGRGVHCWVSDAVALTLSDKDRVNVTEYIN 174


>gi|387593558|gb|EIJ88582.1| hypothetical protein NEQG_01272 [Nematocida parisii ERTm3]
          Length = 284

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 104/175 (59%), Gaps = 9/175 (5%)

Query: 13  MLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKR 72
           +L  YY+ +FP    +RWL Y      + REFSFTL  +IY RYI+ N+  EL   L+  
Sbjct: 9   LLRIYYQSLFPVYDIMRWLRY-----VKTREFSFTLMNEIYIRYITVNTAEELGIRLVTD 63

Query: 73  CPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYM 132
            PQK+D+G +Y   P      +     +KELVFDID+TDY   R CC+  D+CE C+  +
Sbjct: 64  TPQKLDIGGVYVHKPAAVTSDNACM--IKELVFDIDLTDYS--RKCCTDKDMCELCFPLI 119

Query: 133 SIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMS 187
             A ++L+  L+  F F+ +L+VFSG RG+HCWV D  AL L  + R  + EY++
Sbjct: 120 KCAVEVLENILKNVFGFKHILFVFSGGRGVHCWVSDAVALTLSDKDRVNVTEYIN 174


>gi|402467438|gb|EJW02739.1| hypothetical protein EDEG_02860 [Edhazardia aedis USNM 41457]
          Length = 305

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 102/170 (60%), Gaps = 10/170 (5%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQK 76
           YY  +FP     ++L+         REFS TL G+ Y R +S++SP +++  LI + P+K
Sbjct: 12  YYGSVFPVETLYKFLYES-----PNREFSMTLQGNKYVRALSFDSPQKMRSMLISKIPEK 66

Query: 77  IDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIAC 136
           +D+GA+Y   P        F P  KELVFD+D+TDY   RNCC+G  IC+ C+  +  + 
Sbjct: 67  LDIGAVYSSAPA---MGKEFHPIQKELVFDVDLTDYK--RNCCNGKKICDLCFTLVKCSA 121

Query: 137 KILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           K++D  L + F F+ +L+VFSG RGIH WVCDE A  LD + R  +  Y+
Sbjct: 122 KLMDYILTKIFGFKYILYVFSGGRGIHIWVCDEEARFLDDKERKGIINYV 171



 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 224 EEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD 283
           EE   L  KER+    G+++  D       E +     + ++  D ++ I+K +Q    D
Sbjct: 154 EEARFLDDKERK----GIINYVDFYNISNNESSTTSFHKTID--DEILNILKEYQYFFGD 207

Query: 284 RKLKYAIE-EILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           + +   ++ + L+E  Y ++D +V+  + HLLKSPF +HP + +I
Sbjct: 208 QNMNIEVDTKALIEYLYVKIDKNVTSEMKHLLKSPFSIHPISRRI 252


>gi|68011300|ref|XP_671084.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56486937|emb|CAI03893.1| hypothetical protein PB301421.00.0 [Plasmodium berghei]
          Length = 142

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/124 (50%), Positives = 86/124 (69%), Gaps = 1/124 (0%)

Query: 74  PQKIDLGAIYDICPKDHLQHS-VFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYM 132
           P K D+GA+Y+       Q    F P  KEL+FDIDM DYDD+R CC+   +C+ CW+++
Sbjct: 7   PIKFDIGAVYNYPVSQKCQKGDSFRPIQKELIFDIDMNDYDDIRTCCADKKVCKLCWKFL 66

Query: 133 SIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTAN 192
           +IA  +LDT+LREDF FQ +LWV+SGRRGIHCWVCDE+        R+ LA+Y+++L+ +
Sbjct: 67  TIAIVLLDTSLREDFAFQNILWVYSGRRGIHCWVCDESCRHYTTDARAALADYLNILSGS 126

Query: 193 PVKK 196
             KK
Sbjct: 127 DTKK 130


>gi|119617368|gb|EAW96962.1| hCG2016482, isoform CRA_c [Homo sapiens]
          Length = 278

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 115/187 (61%), Gaps = 6/187 (3%)

Query: 145 EDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANP-VKKVFLTGDV 203
           +DF F+  LWV+SGRRG+HCWVCDE+   L    RS + EY+S++     VKK     + 
Sbjct: 6   QDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHLSEK 65

Query: 204 LHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQ 262
           +HP ++++  II+  FE+  L  Q++L  KE   K+L LV    I  E+++ + +     
Sbjct: 66  IHPFIRKSINIIKKYFEEYALVNQDILENKESWDKILALVPET-IHDELQQSFQK--SHN 122

Query: 263 DVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILLELAYPRLDIHVSKGVNHLLKSPFCVH 321
            +++W+ L  +   +Q    + K    +E EI+L+  +PRLDI+VSKG+NHLLKSPF VH
Sbjct: 123 SLQRWEHLKKVASRYQNNIKNDKYGPWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVH 182

Query: 322 PKTGKIC 328
           PKTG+I 
Sbjct: 183 PKTGRIS 189


>gi|70929878|ref|XP_736933.1| small subunit DNA primase [Plasmodium chabaudi chabaudi]
 gi|56511894|emb|CAH75124.1| small subunit DNA primase, putative [Plasmodium chabaudi chabaudi]
          Length = 126

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 89/126 (70%), Gaps = 2/126 (1%)

Query: 102 ELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRG 161
           EL+FDIDM DYDD+R CCS   +C+ CW++++IA  +LDT+LREDF FQ +LWV+SGRRG
Sbjct: 1   ELIFDIDMNDYDDIRTCCSDKKVCKLCWKFLTIAIVLLDTSLREDFAFQNILWVYSGRRG 60

Query: 162 IHCWVCDEAALALDGRGRSCLAEYMSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQF 219
           IHCWVCDE+        R+ LA+Y+++L+ +    KKV + G   +P L+RA  I    F
Sbjct: 61  IHCWVCDESCRHYTTDARAALADYLNILSGSDTKKKKVSIWGKEKYPMLERAFDICYKYF 120

Query: 220 EKLLEE 225
           + LLEE
Sbjct: 121 DVLLEE 126


>gi|325091678|gb|EGC44988.1| DNA primase [Ajellomyces capsulatus H88]
          Length = 343

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 116/207 (56%), Gaps = 13/207 (6%)

Query: 134 IACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL--TA 191
           +A K++DTALR+DF F+ +LWV+SGRRG H WVCD  A +L    R  +A Y+ V+   +
Sbjct: 1   MAIKVIDTALRDDFGFEHILWVYSGRRGAHAWVCDPRARSLPDDRRKAIAGYLEVIRGGS 60

Query: 192 NPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVSNGDIRAE 250
              KKV L    LHPH+ R+  I++  F   +L  Q+  S   +  ++L L+ +  +   
Sbjct: 61  QSGKKVNLK-RPLHPHVSRSLEILKPHFASTILVAQDTFSNPAQAEQLLALLPDKPLADA 119

Query: 251 IEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNS---------DRKLKYAIEEILLELAYPR 301
           + ++W          KW+ + A+ K  +++ +          + L  A ++I LE  YPR
Sbjct: 120 LRRKWDSAPERSSTSKWNDIDAVAKSAKSRGAAAAGQQSLDTKALLEAKQDIALEYTYPR 179

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           LD  VSK + HLLKSPF VHP TG++C
Sbjct: 180 LDAEVSKKLIHLLKSPFVVHPGTGRVC 206


>gi|225678634|gb|EEH16918.1| DNA primase small subunit [Paracoccidioides brasiliensis Pb03]
          Length = 333

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/213 (36%), Positives = 118/213 (55%), Gaps = 19/213 (8%)

Query: 134 IACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL--TA 191
           +A K++DTALREDF F+ +LWV+SGRRG H WVCD  A +L    R  +A Y+ V+   +
Sbjct: 1   MAIKVIDTALREDFGFEHVLWVYSGRRGAHAWVCDAKARSLSDDRRKAIAGYLEVVRGGS 60

Query: 192 NPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVSNGDIRAE 250
              K+V +    LHPH+ R+  I++  F   +L +Q+  S+  +  ++L L+ +  +   
Sbjct: 61  QSGKRVNIK-RPLHPHVARSLEILKPYFASTILGDQDTFSSAAQAEQLLSLLPDKPLVDA 119

Query: 251 IEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD---------------RKLKYAIEEILL 295
           + K+W          KW+ + A+ K  +++  D               + L  A ++I L
Sbjct: 120 LRKKWDSAPGRSSTSKWNDIDALAKSVRSRGPDGKGKGGVGGGKALDTKALLEAKQDIAL 179

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           E  YPRLD  VSK + HLLKSPF VHP TG++C
Sbjct: 180 EYTYPRLDAEVSKKLIHLLKSPFVVHPGTGRVC 212


>gi|345318389|ref|XP_001521650.2| PREDICTED: DNA primase small subunit-like, partial [Ornithorhynchus
           anatinus]
          Length = 334

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/193 (39%), Positives = 118/193 (61%), Gaps = 19/193 (9%)

Query: 146 DFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANP--VKKVFLTGDV 203
           DF FQ  LWV+SGRRG+HCWVCD +A  L    RS + EY+S++      VKKV + G+ 
Sbjct: 1   DFGFQHRLWVYSGRRGVHCWVCDASARKLSPAVRSGIVEYLSLVKGGREMVKKVHV-GEK 59

Query: 204 LHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLV-----------SNGDIRAEI 251
           +HP ++R+  ++ED FE   ++ Q+ L++KER  KV+ LV           +   +R  +
Sbjct: 60  VHPFVRRSVSLVEDYFEDYAVDGQDFLASKERWDKVIALVPEDILRPVVRGAAAPLRETL 119

Query: 252 EKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVN 311
           + +  ++ PG   ++W  L  +++ HQ   + R +  +  E++L+L +PRLD +VSK + 
Sbjct: 120 QSDLPKL-PGSR-QRWHHLKKVLEQHQ--KATRPVSRSDWEVMLQLCFPRLDANVSKSLG 175

Query: 312 HLLKSPFCVHPKT 324
           HLLKSPF VHPKT
Sbjct: 176 HLLKSPFSVHPKT 188


>gi|449691701|ref|XP_004212767.1| PREDICTED: DNA primase small subunit-like, partial [Hydra
           magnipapillata]
          Length = 129

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/119 (56%), Positives = 83/119 (69%), Gaps = 4/119 (3%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSP 62
           Y+   LT++L  YYKR+FPY  Y +WL YG  +   F  REFSFTL  DIY RY+S+   
Sbjct: 11  YNESDLTDLLKQYYKRLFPYKLYYKWLQYGEDSKSYFENREFSFTLKDDIYIRYLSFADA 70

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCC 119
           NEL+K++ K+ P KID+GAIY+  PKD+  LQ  VF  + KELVFDIDMTDYD VR CC
Sbjct: 71  NELEKEMQKKVPYKIDIGAIYNYKPKDNKQLQAGVFKAEEKELVFDIDMTDYDTVRTCC 129


>gi|303390242|ref|XP_003073352.1| DNA primase small subunit [Encephalitozoon intestinalis ATCC 50506]
 gi|303302498|gb|ADM11992.1| DNA primase small subunit [Encephalitozoon intestinalis ATCC 50506]
          Length = 281

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 105/182 (57%), Gaps = 10/182 (5%)

Query: 13  MLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKR 72
           ++  YY+ +FP       L +  L     RE SF L    Y R++++ +  E +K L+  
Sbjct: 7   LMKTYYRTLFPLD-----LIFKCLRIDENREISFGLGSGGYIRFLTFKTAEEFRKKLLGI 61

Query: 73  CPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYM 132
            P++ID+GAIY   P   ++H+V     KELVFD+D+TDY   R CC+   +C KC   +
Sbjct: 62  VPERIDVGAIYKDRP---VKHNVPKVAGKELVFDVDLTDYP--RECCTEKLVCNKCLVLI 116

Query: 133 SIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTAN 192
            +A +ILD +LR++F F+ + +VFSGRRG+HCWV DEAAL L+   R  +  Y   +   
Sbjct: 117 KVAVRILDYSLRKEFGFKNVGFVFSGRRGMHCWVFDEAALELNDIERGEIVRYYDTVVKK 176

Query: 193 PV 194
            V
Sbjct: 177 KV 178


>gi|253743530|gb|EES99895.1| DNA pol/primase, small sub [Giardia intestinalis ATCC 50581]
          Length = 450

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 155/360 (43%), Gaps = 70/360 (19%)

Query: 28  LRWLFYGNLDNFRKREFSFTL----NGDIYARYISYNSPNELKKDL------IKRCPQKI 77
           ++WL Y      +KRE+S+ +    +     R+    +  +L+  L      ++    K+
Sbjct: 26  VKWLTYNGSVPTQKREWSYEIITATDETFVTRFREIAAAEQLRSVLCFSPKTLEDFKLKL 85

Query: 78  DLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACK 137
           D+G IY            F P  +ELVFDID  DYD +R CC+GAD+C+KCWR+M +A  
Sbjct: 86  DIGPIYTSDMSQRKTQPDFAPCERELVFDIDAGDYDRIRTCCAGADMCDKCWRFMELAVP 145

Query: 138 ILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKV 197
           +L    R    F    + FSGRRG+HCW+CD  A  L    R  + +  ++++ +     
Sbjct: 146 LLILFCRVH-GFSNYFFAFSGRRGLHCWICDARARKLSKEARKSIVDAFNIVSVD----- 199

Query: 198 FLTGDVL---HPHLKRAKLIIEDQ-----FEKLLEEQELLSTKERQTKVLGLVSNGDIRA 249
             TG VL   + H      +I D      F ++LEEQ+ L  +    + L   S   + A
Sbjct: 200 --TGSVLRVSYDHSNWLSRLIHDHICTRFFPRMLEEQDWL--EGSIDEYLTNYSKDSLVA 255

Query: 250 EIEKEWTRIGPGQDVEKWDRLVAII-----------KHHQAKNSDRKLKYAIEEILLEL- 297
           E+ +  + +     V  +      I             + AKN D +    +   + +L 
Sbjct: 256 EVRRIDSPLLSSAPVFFFLHTALCIYSCLSAGGLPLTTNSAKNPDGRFTSLLSTFIGKLT 315

Query: 298 ------------------------------AYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
                                          YPR D+ V++G+NHLLK PF VH K+ KI
Sbjct: 316 LLVSSVARWTDFELLMKDYEPVLAAIRVYYTYPRFDVEVTRGMNHLLKIPFSVHSKSRKI 375


>gi|300707511|ref|XP_002995960.1| hypothetical protein NCER_101019 [Nosema ceranae BRL01]
 gi|239605208|gb|EEQ82289.1| hypothetical protein NCER_101019 [Nosema ceranae BRL01]
          Length = 293

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 124/237 (52%), Gaps = 25/237 (10%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQK 76
           YY+R FP     +WL   +      RE SFTL   I+ RY +++     +K L     +K
Sbjct: 9   YYERFFPSKKIFKWLKINSC-----RELSFTLENGIFTRYQTFSDYESFRKRLNDLTFEK 63

Query: 77  IDLGAIYDICP-KDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIA 135
           ID+GA+YD+ P K+ ++ +V     KELVFD+D+TDY+  R CC   +ICE+C   + ++
Sbjct: 64  IDIGAVYDVKPEKNKIKKAV----EKELVFDVDLTDYN--RTCCIDKNICERCISLIKVS 117

Query: 136 CKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM-----SVLT 190
            ++L+  L+E+  F+ L +VFSGRRG+HCWV D  A       R  +  Y+     S + 
Sbjct: 118 VELLEYILKEELGFKKLCFVFSGRRGVHCWVTDSYASKFSEEIRGHIVSYIEKVCASCMY 177

Query: 191 ANPVKKVFL--------TGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVL 239
           ++   ++ +         G V   +L   K + + +F ++L ++  L      TK L
Sbjct: 178 SDKYTEILMRYIPYLIDQGFVEKSNLTSQKFVKDKKFLQILYDKMFLKIDSEVTKSL 234


>gi|401827300|ref|XP_003887742.1| DNA primase catalytic subunit [Encephalitozoon hellem ATCC 50504]
 gi|392998749|gb|AFM98761.1| DNA primase catalytic subunit [Encephalitozoon hellem ATCC 50504]
          Length = 279

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 102/174 (58%), Gaps = 10/174 (5%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           +++  YY+ +FP       L +  L     RE SF L    Y R++++ + +E +K L+ 
Sbjct: 6   QLVRTYYRTLFPLD-----LMFKCLRIDENREVSFGLASGGYIRFLTFRTADEFRKKLLG 60

Query: 72  RCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRY 131
             P++ID+GAIY   P    +H+V     KELVFD+D+TDY   R CC+   +C KC   
Sbjct: 61  IVPERIDVGAIYRDRPA---KHNVPRVAGKELVFDVDLTDYP--RKCCTEKLVCNKCLVL 115

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
           + IA +ILD +LRE+F F+ + +VFSGRRG+HCWV D  AL L    R  + +Y
Sbjct: 116 IKIAVRILDYSLREEFGFKNVGFVFSGRRGVHCWVFDGTALELSDIERGEIVKY 169


>gi|449328812|gb|AGE95088.1| DNA polymerase alpha complex [Encephalitozoon cuniculi]
          Length = 298

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 102/174 (58%), Gaps = 10/174 (5%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           +++  YY+ +FP     R L    +D    RE SF L    Y R++++ + +E +K L+ 
Sbjct: 23  QLMRTYYRTLFPLDLMFRCL---RIDE--SREISFGLGSGGYIRFLTFRTADEFRKKLMG 77

Query: 72  RCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRY 131
             P KID+GAIY   P    +HS+     KELVFD+D+TDY   R CCS   +C +C   
Sbjct: 78  IAPDKIDVGAIYRDRPT---KHSISRVVGKELVFDVDLTDYP--RECCSEKLVCNRCLVL 132

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
           +  A +IL+ +LRE+F F+ + +VFSGRRG+HCWV D+ AL L    R  + +Y
Sbjct: 133 IKAAVEILNYSLREEFGFKDVGFVFSGRRGVHCWVFDDEALELSDLERGEIVKY 186


>gi|19173389|ref|NP_597192.1| DNA POLYMERASE ALPHA COMPLEX [Encephalitozoon cuniculi GB-M1]
          Length = 298

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 102/174 (58%), Gaps = 10/174 (5%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           +++  YY+ +FP     R L    +D    RE SF L    Y R++++ + +E +K L+ 
Sbjct: 23  QLMRTYYRTLFPLDLMFRCL---RIDE--SREISFGLGSGGYIRFLTFRTADEFRKKLMG 77

Query: 72  RCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRY 131
             P KID+GAIY   P    +HS+     KELVFD+D+TDY   R CCS   +C +C   
Sbjct: 78  IAPDKIDVGAIYRDRPT---KHSISRVVGKELVFDVDLTDYP--RECCSEKLVCNRCLVL 132

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
           +  A +IL+ +LRE+F F+ + +VFSGRRG+HCWV D+ AL L    R  + +Y
Sbjct: 133 IKAAVEILNYSLREEFGFKDVGFVFSGRRGVHCWVFDDEALELSDLERGEIVKY 186


>gi|392512807|emb|CAD26368.2| DNA POLYMERASE ALPHA COMPLEX [Encephalitozoon cuniculi GB-M1]
          Length = 281

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 102/174 (58%), Gaps = 10/174 (5%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           +++  YY+ +FP     R L    +D    RE SF L    Y R++++ + +E +K L+ 
Sbjct: 6   QLMRTYYRTLFPLDLMFRCL---RIDE--SREISFGLGSGGYIRFLTFRTADEFRKKLMG 60

Query: 72  RCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRY 131
             P KID+GAIY   P    +HS+     KELVFD+D+TDY   R CCS   +C +C   
Sbjct: 61  IAPDKIDVGAIYRDRPT---KHSISRVVGKELVFDVDLTDYP--RECCSEKLVCNRCLVL 115

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
           +  A +IL+ +LRE+F F+ + +VFSGRRG+HCWV D+ AL L    R  + +Y
Sbjct: 116 IKAAVEILNYSLREEFGFKDVGFVFSGRRGVHCWVFDDEALELSDLERGEIVKY 169


>gi|407033593|gb|EKE36891.1| DNA primase small subunit domain containing protein [Entamoeba
           nuttalli P19]
          Length = 300

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 129/246 (52%), Gaps = 14/246 (5%)

Query: 19  KRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKID 78
           ++ FP   + +W+   N    + RE +       + RY+ +NS  +L   L +  P++I+
Sbjct: 54  EKFFPSKLFYQWV-TRNGKYSQTRELAAFKTNSFFNRYLHFNSSYDLSNYLSRYVPERIE 112

Query: 79  LGAIYDICPKDHLQHS-VFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACK 137
           +G I+D     HL  S   T  M+E V DID+ DYDDVR CCS   +C++CW  +S A K
Sbjct: 113 IGPIFD-----HLLFSQTNTATMREFVIDIDIDDYDDVRYCCSSTQVCKRCWILISCAAK 167

Query: 138 ILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKK- 196
           ++    +E F  + +L VFSGRRGIH W+CDE AL  + + R+ + +Y S++T   + K 
Sbjct: 168 VIHHIFQEQFGMKHILNVFSGRRGIHFWICDEQALHFNEQMRTYITKYFSLVTNQCINKD 227

Query: 197 --VFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEK- 253
               +     +P       I+E  FE   E+QE+   ++R+ ++L L+   +    I K 
Sbjct: 228 NHPIIDIHEEYPLYNEVYQILEPYFEDYCEKQEIFKNEQRKEQLLNLLPQNETSQVIRKF 287

Query: 254 ---EWT 256
               WT
Sbjct: 288 NNLSWT 293


>gi|396081864|gb|AFN83478.1| DNA primase small subunit [Encephalitozoon romaleae SJ-2008]
          Length = 279

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 98/171 (57%), Gaps = 14/171 (8%)

Query: 17  YYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQK 76
           YY+ +FP       L +  L     RE SF L    Y R++++ + +E +K L+   P++
Sbjct: 11  YYRTLFPID-----LMFKCLRIDENREVSFGLASGGYIRFLTFRTADEFRKKLLGIVPER 65

Query: 77  IDLGAIYDICPKDHLQHSVFTPKM--KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSI 134
           ID+GAIY   P  H       PK+  KELVFD+D+TDY   R CCS   IC KC   + +
Sbjct: 66  IDVGAIYRDRPTKH-----NAPKIVGKELVFDVDLTDYP--RECCSKKLICNKCLVLIKV 118

Query: 135 ACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
           A KILD +L+++  F+ + +VFSGRRG+HCWV D+ AL L    R  +  Y
Sbjct: 119 AVKILDYSLKQELGFKNVGFVFSGRRGVHCWVFDDTALELSDIERGEIVRY 169


>gi|207344242|gb|EDZ71451.1| YIR008Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 159

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 86/145 (59%), Gaps = 4/145 (2%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + +YYK ++P+     WL +      +   REF+       Y RY S+NS  + K  + K
Sbjct: 15  MEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIEK 74

Query: 72  RCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GAIY+  P+  D L  S      KELVFDIDM DYD  R CCSGA +C KCW
Sbjct: 75  ANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSGAQVCSKCW 134

Query: 130 RYMSIACKILDTALREDFDFQLLLW 154
           +++S+A KI++TALREDF ++  +W
Sbjct: 135 KFISLAMKIMNTALREDFGYKDFIW 159


>gi|159107900|ref|XP_001704225.1| DNA pol/primase, small sub [Giardia lamblia ATCC 50803]
 gi|157432281|gb|EDO76551.1| DNA pol/primase, small sub [Giardia lamblia ATCC 50803]
          Length = 449

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 152/360 (42%), Gaps = 70/360 (19%)

Query: 28  LRWLFYGNLDNFRKREFSFTL----NGDIYARYISYNSPNELKKDL------IKRCPQKI 77
           + WL Y      ++RE+S+ +    +     R+   +   +L+  L      ++    K+
Sbjct: 26  VEWLTYHGSVLTQRREWSYEIITATDETFVTRFREISDAEQLRSILRFSSKTLEDFKLKL 85

Query: 78  DLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACK 137
           D+G +Y            F P  +ELVFDID  DYD +R CC+G  +C+KCWR+M +A  
Sbjct: 86  DIGPVYTSDMSQRKTQPEFAPCERELVFDIDAGDYDRIRTCCAGPAMCDKCWRFMELAVP 145

Query: 138 ILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKV 197
           +L    R    F    +VFSGRRG+HCW+CD  A  L    R  + +  ++++ +     
Sbjct: 146 LLILFCRVH-GFNDYFFVFSGRRGLHCWICDARARKLSKDSRKSMVDAFNIISID----- 199

Query: 198 FLTGDVL---HPHLKRAKLIIEDQ-----FEKLLEEQELLSTKERQTKVLGLVSNGDIRA 249
             TG VL   + H      +I D      F ++LEEQ  L     +   L   S   +  
Sbjct: 200 --TGSVLRESYDHSNWLCRLIHDHICIRFFSQMLEEQNWLGGGVEEH--LAKYSKESLLT 255

Query: 250 EIEKEWTRIGPGQDVEKWDRLVAII-----------KHHQAKNSDRKLKYAIEEIL---- 294
           E+ +  + +     +  +  +   I               AKNSD +    +   +    
Sbjct: 256 ELRRADSALFSSAPIFFFLHITLCIYSCLVAGGYPVTTGSAKNSDGRFASLLTTFIGKLT 315

Query: 295 -----------LEL----------------AYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
                      LEL                 YPR D+ V++G+NHLLK PF VH K+ KI
Sbjct: 316 MITSSAARWTELELLIKDYDPILAAIRVYYTYPRFDVEVTRGMNHLLKIPFSVHSKSRKI 375


>gi|169806650|ref|XP_001828069.1| DNA primase small subunit [Enterocytozoon bieneusi H348]
 gi|161779197|gb|EDQ31221.1| DNA primase small subunit [Enterocytozoon bieneusi H348]
          Length = 275

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 93/161 (57%), Gaps = 10/161 (6%)

Query: 13  MLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKR 72
           +L  YY +IFPY          ++++FR  E SF  +   + RY ++N+ NE K  ++  
Sbjct: 13  ILKQYYSKIFPYKTLFDIF---SINSFR--ELSFGKDDTTFIRYETFNTCNEFKDKILSL 67

Query: 73  CPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYM 132
            P +ID+GA+YD  P     ++      KELVFD+D+TDYD  RNCC    +CEKC+  +
Sbjct: 68  NPHRIDIGAVYDNKPSKTGNNNAIR---KELVFDMDLTDYD--RNCCKEKTMCEKCYELI 122

Query: 133 SIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALA 173
               +ILD   +E+F F    +VFSGRRGIHCWV +E  L 
Sbjct: 123 KCGIEILDYIFKEEFGFLNYGFVFSGRRGIHCWVFNENDLT 163


>gi|308163206|gb|EFO65565.1| DNA pol/primase, small sub [Giardia lamblia P15]
          Length = 449

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 155/368 (42%), Gaps = 90/368 (24%)

Query: 30  WLFYGNLDNFRKREFSFTL----NGDIYARYISYNSPNELKKDLIKRCPQ-------KID 78
           WL Y      ++RE+S+ +    +    AR+   +   +L+  +++  P+       K+D
Sbjct: 28  WLTYHGSVLTQRREWSYEMITATDETFVARFREISDAEQLRS-VLRFSPRTLEDFKLKLD 86

Query: 79  LGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKI 138
           +G IY            F P  +ELVFDID  DYD +R CC+G  +C+KCWR+M +A  +
Sbjct: 87  IGPIYTSDMSQRKTQPEFAPCERELVFDIDAGDYDRIRTCCTGPAMCDKCWRFMELAVPL 146

Query: 139 LDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVF 198
           L    R    F    +VFSGRRG+HCW+CD  A  L    R  + +  ++++ +      
Sbjct: 147 LILFCRVH-GFNDYFFVFSGRRGLHCWICDARARKLSKDSRKSMVDAFNLISMD------ 199

Query: 199 LTGDVL---HPHLKRAKLIIEDQ-----FEKLLEE----------------QELLSTKER 234
            TG VL   + H      +I D      F ++LEE                +E L T+ R
Sbjct: 200 -TGSVLRESYDHSNWLCRLIHDHICIRFFSQMLEEQDWLSGAVEEHLAKYSKEGLVTELR 258

Query: 235 QTK------------------------------VLGLVSNGDIR-----AEIEKEWTRIG 259
           +                                  G   N D R     A    + T I 
Sbjct: 259 RADSALLLLAPIFFFLHTTLFIYSCLSAGGFPLTTGSAKNPDGRFASLLAVFVGKLTLIT 318

Query: 260 PGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFC 319
                 +W  L  +IK ++   +  ++ Y          YPR D+ V++G+NHLLK PF 
Sbjct: 319 --SSAARWTELELLIKDYEPILAAIRVYYT---------YPRFDVEVTRGMNHLLKIPFS 367

Query: 320 VHPKTGKI 327
           VH K+ KI
Sbjct: 368 VHSKSRKI 375


>gi|429961364|gb|ELA40909.1| hypothetical protein VICG_02049 [Vittaforma corneae ATCC 50505]
          Length = 266

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 89/165 (53%), Gaps = 10/165 (6%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRC 73
           L  YY+ +FP       L Y  L+   +RE SF  +   Y RY++++S    ++ L    
Sbjct: 7   LKVYYRELFPLQ-----LLYETLEINGRREVSFFTSTGSYMRYLTFDSAELFREKLELVN 61

Query: 74  PQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMS 133
           P+KIDLG +YDI P    + +   P  +E+VFDID+TDY   R CC    IC  C+  + 
Sbjct: 62  PRKIDLGPVYDIKPS---KSNGAVPVAREIVFDIDLTDYP--RECCKDKKICNLCYEKIK 116

Query: 134 IACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
            A  ILD +LR +F F    +VFSGRRG+HCWV +   L    R 
Sbjct: 117 CAINILDYSLRTEFGFTSYGFVFSGRRGVHCWVLEMKELPTHVRN 161



 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 294 LLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
           L++  +PR+D  V+  +NHL+K PF VHP T  I
Sbjct: 192 LVKNFFPRIDKQVTVSMNHLIKMPFSVHPDTFNI 225


>gi|402583554|gb|EJW77498.1| DNA primase small subunit, partial [Wuchereria bancrofti]
          Length = 220

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 108/208 (51%), Gaps = 34/208 (16%)

Query: 147 FDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANP-VKKVFLTGDVLH 205
           F F+  LWVFSGRRGIHCWV D AA  L   GR  + EY+S++T+   + K       +H
Sbjct: 2   FGFKHCLWVFSGRRGIHCWVADAAARKLQNAGRMAVVEYLSLVTSGQKISKAASKRTFVH 61

Query: 206 P-------HLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVS--NGDIRAEIEKEWT 256
           P       +L +  L   D  E +LE+  + +         GL+S  +G I  E+EKE  
Sbjct: 62  PMLEDVYSYLMQWSLSASDVSELMLEQGWMSND--------GLMSLLDGCINEEVEKEIR 113

Query: 257 RIGPGQDV-----EKWDRL-VAIIKHHQA---KN-------SDRKLKYAIEEILLELAYP 300
            I           ++W+ L +   K+ +A   KN       +  +  +     +L+ AYP
Sbjct: 114 EIIVEVKTVDCLKKRWNALRIKFDKYKRAELKKNGIELCEVASLQSSFHFRGYVLQHAYP 173

Query: 301 RLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           RLDIHVS G+NHLLKSPFCVHPKTG I 
Sbjct: 174 RLDIHVSAGINHLLKSPFCVHPKTGLIA 201


>gi|361131039|gb|EHL02769.1| putative DNA primase small subunit [Glarea lozoyensis 74030]
          Length = 237

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 99/197 (50%), Gaps = 45/197 (22%)

Query: 134 IACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANP 193
           ++ K++D ALR+DF F+ +LWV+SGRRG H WV                           
Sbjct: 1   MSIKVIDVALRDDFGFKHILWVYSGRRGAHAWV--------------------------- 33

Query: 194 VKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLVSNGDIRAEIE 252
                           R+  I++  F+  +L++Q+   T  +  ++L L+ +  +   + 
Sbjct: 34  ----------------RSLEILKTHFQSDILQDQDPWETDAKYERLLELLPDRTLNDALR 77

Query: 253 KEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK-LKYAIEEILLELAYPRLDIHVSKGVN 311
           K+W+         KW  + A+ K   +KN D K L  A ++ILLE  YPRLDI VSK +N
Sbjct: 78  KKWSSSPGRASTAKWADIDALAKSGTSKNLDSKALLEAKQDILLEYTYPRLDIEVSKHLN 137

Query: 312 HLLKSPFCVHPKTGKIC 328
           HLLKSPF VHP TG++C
Sbjct: 138 HLLKSPFVVHPGTGRVC 154


>gi|300176392|emb|CBK23703.2| unnamed protein product [Blastocystis hominis]
          Length = 122

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 68/106 (64%)

Query: 89  DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFD 148
            H   S F P  +EL+FDIDM DY  VR CC GA+IC KCW++M+ A  +L + L ++F 
Sbjct: 2   SHKGGSAFKPIARELIFDIDMDDYSSVRYCCEGANICPKCWKFMTNAAMVLKSILTKEFG 61

Query: 149 FQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPV 194
           F+ +L+V+SGRRGIH WVCD  A +L    RS +  Y++   +  V
Sbjct: 62  FKHILFVYSGRRGIHIWVCDRRARSLTDYQRSNIVNYVTFTPSTTV 107


>gi|47777403|gb|AAT38037.1| unknown protein [Oryza sativa Japonica Group]
 gi|55167985|gb|AAV43853.1| unknown protein [Oryza sativa Japonica Group]
 gi|215707277|dbj|BAG93737.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 166

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 98/163 (60%), Gaps = 16/163 (9%)

Query: 174 LDGRGRSCLAEYMSVLTA--NPVKKVFLTGDVLHPHLKRAKLIIEDQF--EKLLEEQELL 229
           L+   R+ +A+Y  V     N +KKV LTG VLHP L R+   +   F  +KLL  Q+L 
Sbjct: 9   LNNEQRAAIADYFRVYKGGENTMKKVSLTGAVLHPFLARSYTDVLKGFFEDKLLLSQQLF 68

Query: 230 STKERQTKVLGLVSNGDIRAEIEKEW-----TRIGPGQDVE--KWDRLVAIIKHHQAKNS 282
           +++ER  K+L L+ + ++ +E+  +W     + I   +DV   +W++L + ++  + K  
Sbjct: 69  ASEERYQKILDLIPDENVASELHDKWQGNRRSSISK-EDVNATRWEQLKSTLQSGKHKG- 126

Query: 283 DRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTG 325
              L+  IEEI+    YPRLD+ VSK +NHLLK+PFC+HPKTG
Sbjct: 127 ---LRRCIEEIVFSYTYPRLDMEVSKHMNHLLKAPFCIHPKTG 166


>gi|297852518|ref|XP_002894140.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297339982|gb|EFH70399.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 199

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/146 (37%), Positives = 89/146 (60%), Gaps = 13/146 (8%)

Query: 192 NPVKKVFLTGDVLHPHLKRAKL-IIEDQFE-KLLEEQELLSTKERQTKVLGLVSNGDIRA 249
           N  K V L G    P L R+ +  +++ FE +L   Q + S+KE+  K+LG++++ DI++
Sbjct: 19  NSAKNVDLMGHSHQPFLARSCVDFLKNFFEDELHATQSIFSSKEKYEKILGMITDEDIQS 78

Query: 250 EIEKEW---TRIGPGQDVE---KWDRLVAIIKHHQAKNSDR-KLKYAIEEILLELAYPRL 302
           E+  EW    R  P ++     +W++L  +    Q+KN+    L+  +EEI+    YPR+
Sbjct: 79  ELRGEWKNSARSSPSEEATSLLRWEQLKTL----QSKNNKALSLRTCVEEIVFNFIYPRI 134

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           D+ VSK +NHLLK+PFCVHP TG++C
Sbjct: 135 DLEVSKKMNHLLKAPFCVHPNTGRVC 160


>gi|322796379|gb|EFZ18920.1| hypothetical protein SINV_15337 [Solenopsis invicta]
          Length = 205

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 7/126 (5%)

Query: 207 HLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVE 265
           H +RA  II+  F E  ++EQ +L T+E   K L ++ N + R E++  ++     +   
Sbjct: 4   HYRRALDIIDPIFVEMSVKEQNMLGTEEAIEKFLPILPNDEDRQEVKMLFSTESTSE--A 61

Query: 266 KWDRLVAIIKHHQAKNSDRK---LKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHP 322
           +W+  V  I+  +    DRK    ++ IEEI L+ +YPRLDI+VSKG+NHLLKSPFCVHP
Sbjct: 62  RWNTFVQYIESKRT-GGDRKWYLYRHLIEEIKLQYSYPRLDINVSKGLNHLLKSPFCVHP 120

Query: 323 KTGKIC 328
           KTGKIC
Sbjct: 121 KTGKIC 126


>gi|326468519|gb|EGD92528.1| hypothetical protein TESG_08236 [Trichophyton tonsurans CBS 112818]
          Length = 1969

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 14/197 (7%)

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLT- 190
           MSI  K++D ALR+DF FQ +LWV+SGRRG H WVCD+ A  L    R  +A Y+ V+  
Sbjct: 1   MSI--KVIDAALRDDFGFQHILWVYSGRRGAHAWVCDKVARNLPDDRRRAIAGYLEVVRG 58

Query: 191 -ANPVKKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVSNGDIR 248
            +   K+V L    LHPH+ R+   + + F   +L +Q+  S  ++  +++ L+ +  +R
Sbjct: 59  GSQSGKRVNLRRP-LHPHITRSIDTLREYFASTVLVDQDPFSRPDQAARLIELLPDKTLR 117

Query: 249 AEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSK 308
           A ++K+W    PG       RL       + +N++ K   +      E   PR    +S 
Sbjct: 118 AALQKKWDS-APG-------RLTEAGSSRKEQNAEHKGSASPTMSDQENRPPRAYPPLSA 169

Query: 309 GVNHLLKSPFCVHPKTG 325
            V+H    P   H + G
Sbjct: 170 AVSHGQSQPHVHHGQQG 186


>gi|449513649|ref|XP_002194984.2| PREDICTED: DNA primase small subunit-like, partial [Taeniopygia
           guttata]
          Length = 337

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 43/180 (23%)

Query: 146 DFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLH 205
           D   +  LWV+SGRRG+HCWVCD+A        R+   EY+S++      KV   G    
Sbjct: 1   DLGVRHRLWVYSGRRGVHCWVCDDAVRKWSPALRAAAVEYLSLV------KVGARG---- 50

Query: 206 PHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVE 265
               R+ L   +  ++L E                      ++AE  ++         ++
Sbjct: 51  ---ARSPLPSPEPVQELREP---------------------LQAEFPRK------KDSLQ 80

Query: 266 KWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTG 325
           +W+ L A  +  + +      ++   E++L+L +PRLD++VSKG+ HLLKSPF VHPKTG
Sbjct: 81  RWELLRARAERERERGRAGWPEW---EVMLQLCFPRLDVNVSKGLGHLLKSPFSVHPKTG 137



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/29 (75%), Positives = 26/29 (89%)

Query: 297 LAYPRLDIHVSKGVNHLLKSPFCVHPKTG 325
           L +PRLD++VSKG+ HLLKSPF VHPKTG
Sbjct: 283 LCFPRLDVNVSKGLGHLLKSPFSVHPKTG 311


>gi|241640412|ref|XP_002410876.1| DNA polymerase alpha subunit IV, putative [Ixodes scapularis]
 gi|215503589|gb|EEC13083.1| DNA polymerase alpha subunit IV, putative [Ixodes scapularis]
          Length = 206

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 67/116 (57%), Gaps = 5/116 (4%)

Query: 214 IIEDQFEKL-LEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVA 272
           I++  F  L LE Q +L   +    V+    +   + EI K    + P    ++W   V 
Sbjct: 12  ILKKSFSTLTLENQRILEDDKFWHGVINNCPDESSKEEIRK--CVLSPTSSEQRWTEFVD 69

Query: 273 IIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            ++  + K    K ++ +EE++LEL YPRLDI V+KGV HLLK+PFCVHPKTG++C
Sbjct: 70  AVE--RLKRKSLKCQFLVEEVMLELCYPRLDIAVTKGVQHLLKAPFCVHPKTGRVC 123


>gi|297262718|ref|XP_001098855.2| PREDICTED: DNA primase small subunit-like, partial [Macaca mulatta]
          Length = 190

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 3/136 (2%)

Query: 194 VKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLVSNGDIRAEIE 252
           VKK     + +HP ++++  II+  FE+  L  Q++L  KE   K+L LV   +I +   
Sbjct: 5   VKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILKNKESWDKILALVPE-NILSRDH 63

Query: 253 KEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILLELAYPRLDIHVSKGVN 311
              +       +++W+ L  +    Q    + K    +E EI+L+  +PRLDI+VSKG+N
Sbjct: 64  FCVSXXXSHNSLQRWEHLKKVASRCQNNIKNDKYGPWLEWEIMLQYCFPRLDINVSKGIN 123

Query: 312 HLLKSPFCVHPKTGKI 327
           HLLKSPF VHPKTG+I
Sbjct: 124 HLLKSPFSVHPKTGRI 139


>gi|429964500|gb|ELA46498.1| hypothetical protein VCUG_01990 [Vavraia culicis 'floridensis']
          Length = 304

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 95/217 (43%), Gaps = 40/217 (18%)

Query: 12  EMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + L  +Y++ FP   + R  F+G   +   RE SF    +   RY+S++  + L   L+K
Sbjct: 34  QYLHTFYRKYFPVALFSR--FFGLSAH---REVSFMKQNERVIRYLSFDGADALMDALLK 88

Query: 72  RCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDY------------------D 113
             P K DLG+ Y   P  +  +++F  K +ELVFDIDMTDY                  +
Sbjct: 89  EVPLKFDLGSNYVSVPAMN-SNNIF--KSRELVFDIDMTDYMKEMERKGKTGGNKTKHAE 145

Query: 114 DVRNCCSGA-----------DICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGI 162
             R   S A            +C+ C   M+    +L   L + F F  +++ FSG +G 
Sbjct: 146 GERGVSSTALRDTSDVHVCDKLCDDCIAQMNRIIALLKEILTDHFGFTHVIFFFSGNKGF 205

Query: 163 HCWVCDEAALALDGRGRSCLAEYM---SVLTANPVKK 196
           HC+V D          R  +A Y+   SVL    V K
Sbjct: 206 HCYVMDALTSHFASIVRHSIASYLKKHSVLVDENVTK 242



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 23/27 (85%)

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +D +V+K V HLLK+PFCVHPK+G +C
Sbjct: 236 VDENVTKDVKHLLKAPFCVHPKSGYVC 262


>gi|2353692|gb|AAC51726.1| DNA primase 1 [Homo sapiens]
          Length = 50

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/48 (68%), Positives = 38/48 (79%)

Query: 96  FTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTAL 143
           F  + KELVFDIDMTDYDDVR CCS ADIC KCW  M++A +I+D AL
Sbjct: 3   FQAQEKELVFDIDMTDYDDVRRCCSSADICPKCWTLMTMAIRIIDRAL 50


>gi|380795451|gb|AFE69601.1| DNA primase small subunit, partial [Macaca mulatta]
          Length = 210

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 74/123 (60%), Gaps = 5/123 (4%)

Query: 208 LKRAKLIIEDQFEK-LLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEK 266
           ++++  II+  FE+  L  Q++L  KE   K+L LV    I  E+++ + +      +++
Sbjct: 2   IRKSINIIKKYFEEYALVNQDILKNKESWDKILALVPEI-IHDELQQGFQK--SHNSLQR 58

Query: 267 WDRLVAIIKHHQAKNSDRKLKYAIE-EILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTG 325
           W+ L  +    Q    + K    +E EI+L+  +PRLDI+VSKG+NHLLKSPF VHPKTG
Sbjct: 59  WEHLKKVASRCQNNIKNDKYGPWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVHPKTG 118

Query: 326 KIC 328
           +I 
Sbjct: 119 RIS 121


>gi|328856178|gb|EGG05300.1| hypothetical protein MELLADRAFT_107513 [Melampsora larici-populina
           98AG31]
          Length = 213

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 15/139 (10%)

Query: 204 LHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQ 262
           +HP ++R+  I++  F E +  EQ+ L   E+ + VL  +S  +   +I ++ T      
Sbjct: 29  IHPAIERSYNILKVYFREIVFVEQDALKDPEKLSTVLQALSESEKLKQISEKLTMAKSMT 88

Query: 263 DVEKWDRLVAIIKHHQAKNSDRK-------------LKYAIEEILLELAYPRLDIHVSKG 309
              KW+ +   +   + KN DRK             LK A+  I L   Y R+D+ VSK 
Sbjct: 89  SFAKWEEIHKTVGQ-EIKNIDRKANSSFSDQRRSQRLKEALINIQLHCTYRRIDLKVSKN 147

Query: 310 VNHLLKSPFCVHPKTGKIC 328
           +NHLLKSPFCV+P TGK+C
Sbjct: 148 MNHLLKSPFCVNPGTGKVC 166


>gi|183235176|ref|XP_001914165.1| DNA primase small subunit [Entamoeba histolytica HM-1:IMSS]
 gi|169800703|gb|EDS89060.1| DNA primase small subunit, putative, partial [Entamoeba histolytica
           HM-1:IMSS]
          Length = 189

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 18/115 (15%)

Query: 214 IIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAI 273
           I+E  F+K L+++++L + ER+++ + L+         EKE            WD +  I
Sbjct: 18  ILEPLFKKYLQDEQILESSERRSRFIRLIPTSKQSQCEEKEDL---------TWDYVKRI 68

Query: 274 IKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +      N D K   A++ I+    YPRLDI+VS   NHLLK+PFC+HP TG IC
Sbjct: 69  L------NDDPK---ALQRIVFTYLYPRLDINVSMKRNHLLKAPFCIHPATGNIC 114


>gi|328848859|gb|EGF98054.1| hypothetical protein MELLADRAFT_113881 [Melampsora larici-populina
           98AG31]
          Length = 214

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 40/52 (76%)

Query: 91  LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTA 142
           L  + F P ++ELVFDID+TDYDD+R+CC  A IC K W++++IA K+LD +
Sbjct: 31  LMQAAFKPILRELVFDIDLTDYDDIRSCCCEARICSKRWKFITIAEKVLDLS 82



 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 284 RKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVH--PKTGKIC 328
           ++LK  +  I +   YPR+++ V K + H+LKSPF VH    TGK+C
Sbjct: 93  QRLKEELINIQIHYTYPRINLEVHKHMTHILKSPFWVHLGSSTGKVC 139


>gi|313217229|emb|CBY38377.1| unnamed protein product [Oikopleura dioica]
          Length = 84

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 42/67 (62%)

Query: 12 EMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
          E+L  YYK  FP  P++ WL Y N +   +REFSFTL  D+Y R+ S+ S  EL +  IK
Sbjct: 18 EVLSSYYKEYFPLDPFIEWLGYRNDETLSRREFSFTLKDDVYTRFRSFTSKEELHQAFIK 77

Query: 72 RCPQKID 78
            P+K++
Sbjct: 78 TKPEKVE 84


>gi|67584033|ref|XP_665030.1| small subunit DNA primase [Cryptosporidium hominis TU502]
 gi|54655360|gb|EAL34801.1| small subunit DNA primase [Cryptosporidium hominis]
          Length = 192

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 10/114 (8%)

Query: 219 FEKLLEEQELLSTKERQT-KVLGLVSNGDIRAEIEKEWTRIGPGQD---VEKWDRLVAII 274
           F+++LE Q++         KVL  +S      +  + W  I    D   +E WD L   +
Sbjct: 4   FDQILENQQIFDHNSIHIEKVLNHLSEDTKVYQTVQNW--IQKTSDFTCLEFWDFLSNTL 61

Query: 275 KHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +    K+SD+     ++EI+   +YPRLDI+VSK + HLLK+PFC+H  TG++C
Sbjct: 62  Q----KSSDKSHLTLLKEIVFAYSYPRLDINVSKDLGHLLKAPFCIHHSTGRLC 111


>gi|297851478|ref|XP_002893620.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297339462|gb|EFH69879.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 85

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 286 LKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           L+  +EEI+    YPR+D+ VSK +NHLLK+PFCVHP TG++C
Sbjct: 4   LRTCVEEIVFNFIYPRIDLEVSKKMNHLLKAPFCVHPNTGRVC 46


>gi|403372871|gb|EJY86344.1| DNA primase [Oxytricha trifallax]
          Length = 111

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/30 (86%), Positives = 29/30 (96%)

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           YPR+D +VSKG+NHLLKSPFCVHPKTGKIC
Sbjct: 10  YPRIDANVSKGINHLLKSPFCVHPKTGKIC 39


>gi|312136828|ref|YP_004004165.1| DNA primase, small subunit [Methanothermus fervidus DSM 2088]
 gi|311224547|gb|ADP77403.1| DNA primase, small subunit [Methanothermus fervidus DSM 2088]
          Length = 297

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 118/288 (40%), Gaps = 41/288 (14%)

Query: 42  REFSFTLNGDIYA-RYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKM 100
           REF+F  +G   + RY S+ +  +L+K +  R P      AIY         H     K 
Sbjct: 34  REFAFDHDGSGPSDRYRSFKNKRKLEKFIKIRAPY-----AIYSSVAFYEKPHKREGWKG 88

Query: 101 KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRR 160
            ELVFDID  D    +  C  A  CE C        KI+++ LR DF  + +  ++SG R
Sbjct: 89  AELVFDIDAKDLPIKKCKCKNA--CEICLEQAKDIVKIINSILRNDFGLEKIHIIYSG-R 145

Query: 161 GIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFE 220
           G H  V D+  L LD   R  + +Y+ V   +P   VF T  + +P +          F 
Sbjct: 146 GYHIRVLDKDVLELDSEVRREILKYV-VGWDDPGSDVFFTIPIGYPKV----------FT 194

Query: 221 KLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAK 280
           K ++   L   +  + + +   +   IR   EK                    IK ++  
Sbjct: 195 KWMKYIFLNIDENSKVEGISRYTLRKIRKNREK--------------------IKKNEFG 234

Query: 281 NSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
                LK  I+ I   +    +D  V+  VN +L+ P  VH K G +C
Sbjct: 235 KLRINLKRLIDPI-RNINSKLVDTKVTIDVNRILRLPGSVHSKVGAVC 281


>gi|171186132|ref|YP_001795051.1| DNA primase, small subunit [Pyrobaculum neutrophilum V24Sta]
 gi|226705024|sp|B1YAF6.1|PRIS_THENV RecName: Full=Probable DNA primase small subunit
 gi|170935344|gb|ACB40605.1| DNA primase, small subunit [Pyrobaculum neutrophilum V24Sta]
          Length = 312

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 14/193 (7%)

Query: 35  NLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKI-DLGAIYDICPKDHLQH 93
           ++D   KREF+F   G    R+ ++ S  EL++  +++ P+ +    A Y+   +  ++ 
Sbjct: 18  DVDAVEKREFAFQPFGGGMVRHKAFKSVEELRRFAVEKTPRHMYHSSAYYERPDEGDMER 77

Query: 94  SVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWR-YMSIACKILDTALREDFDFQLL 152
             +     +L+FDID  D+ D   C     +   C       A K+LD   RE    +  
Sbjct: 78  KGWLGA--DLIFDID-GDHLDTEACRESKLVSIACLNDAREEANKLLDVLTRE-LGLKPR 133

Query: 153 LWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPV--------KKVFLTGDVL 204
             VFSG RG H  V DE  LAL  R R  L  Y+     +P         +KV L  + +
Sbjct: 134 RIVFSGNRGFHVHVADEEVLALGARERRELVNYLKAAGFDPTRFAAKLGRRKVLLYEEEV 193

Query: 205 HPHLKRAKLIIED 217
             +L R +  +ED
Sbjct: 194 EGNLLRIRQGVED 206


>gi|297838195|ref|XP_002886979.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332820|gb|EFH63238.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 140

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 19/129 (14%)

Query: 192 NPVKKVFLTGDVLHPHLKRA-----KLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGD 246
           N  K V L G    P L R+     K   ED+   L   Q + S+KE+  K+LG++++ D
Sbjct: 19  NSAKNVDLMGHSHQPFLARSCVDFLKNFFEDE---LHATQSIFSSKEKYEKILGMITDED 75

Query: 247 IRAEIEKEW---TRIGPGQDVE---KWDRLVAIIKHHQAKNSDR-KLKYAIEEILLELAY 299
           I++E+  EW    R  P ++     +W++L  +    Q+KN+    L+  +EEI+    Y
Sbjct: 76  IQSELRGEWENSARSSPSEEATSLLRWEQLKTL----QSKNNKALSLRTCVEEIVFNFIY 131

Query: 300 PRLDIHVSK 308
           PR+D+ VSK
Sbjct: 132 PRIDLEVSK 140


>gi|68063433|ref|XP_673711.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56491760|emb|CAI02503.1| hypothetical protein PB300792.00.0 [Plasmodium berghei]
          Length = 130

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 32/39 (82%)

Query: 290 IEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           I+EI+    YPRLDI+VSK +NHLLKSPFC+H  TG++C
Sbjct: 5   IKEIVFHFTYPRLDINVSKEINHLLKSPFCIHNGTGRVC 43


>gi|70951129|ref|XP_744830.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56524942|emb|CAH77330.1| hypothetical protein PC000150.02.0 [Plasmodium chabaudi chabaudi]
          Length = 143

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 35/48 (72%)

Query: 281 NSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           N +  +   I+EI+    YPRLDI+VSK +NHLLKSPFC+H  TG++C
Sbjct: 20  NQNPVIPSYIKEIVFHFTYPRLDINVSKEINHLLKSPFCIHNGTGRVC 67


>gi|328853441|gb|EGG02580.1| hypothetical protein MELLADRAFT_91279 [Melampsora larici-populina
           98AG31]
          Length = 105

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 35/63 (55%)

Query: 142 ALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTG 201
           +LREDF FQ L WV SGRRGIHCWV D  AL L    R  +  ++ +L     +  F+  
Sbjct: 15  SLREDFGFQHLSWVCSGRRGIHCWVSDGEALKLTDEQRKGIVNFLDILRGGGSRHAFMPA 74

Query: 202 DVL 204
             L
Sbjct: 75  TYL 77


>gi|374326955|ref|YP_005085155.1| DNA primase-like protein [Pyrobaculum sp. 1860]
 gi|356642224|gb|AET32903.1| DNA primase related protein [Pyrobaculum sp. 1860]
          Length = 312

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 9/170 (5%)

Query: 32  FYGN-----LDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLG-AIYDI 85
           FY N     +D   +REF+F   G    R+ S+ S  +L++ ++++ P+ I    A Y+ 
Sbjct: 10  FYRNYARFEIDAVERREFAFQPFGGGMVRHKSFKSLEDLRRFVVEKTPRHIYHSVAYYER 69

Query: 86  CPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALRE 145
             ++ ++   +     +LVFDID  D+ D   C     +  +C          L   LRE
Sbjct: 70  PGEEDMEGKGWLGA--DLVFDID-GDHLDTEACRGATLVTLQCLEDAREEANKLVDVLRE 126

Query: 146 DFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVK 195
           + D +    VFSG RG H  V  E  L L  R R  L  ++     +P +
Sbjct: 127 ELDLKPARIVFSGNRGFHIHVSGEEVLGLGARERRELVNFLKAGGFDPSR 176


>gi|55847581|gb|AAV67780.1| probable DNA primase small subunit [Aspergillus fumigatus]
          Length = 179

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 260 PGQD-VEKWDRLVAIIKHHQAKN-SDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSP 317
           PG+    KW  + A+ K  ++   +   L+ A ++I+LE  YPRLD  VSK + HLLKSP
Sbjct: 4   PGRSSTNKWADIDALAKTGKSSTLNPTTLRDAKQDIVLEYTYPRLDAEVSKKMIHLLKSP 63

Query: 318 FCVHPKTGKIC 328
           F +HP TG++C
Sbjct: 64  FVIHPGTGRVC 74


>gi|126459604|ref|YP_001055882.1| DNA primase small subunit [Pyrobaculum calidifontis JCM 11548]
 gi|166223389|sp|A3MUU9.1|PRIS_PYRCJ RecName: Full=Probable DNA primase small subunit
 gi|126249325|gb|ABO08416.1| DNA primase small subunit [Pyrobaculum calidifontis JCM 11548]
          Length = 312

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 4/161 (2%)

Query: 36  LDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLG-AIYDICPKDHLQHS 94
           +D   KREF+F        R+ ++ +  ELK+ L+++ P+ +    A Y+   ++ ++  
Sbjct: 19  VDEVEKREFAFQPFVGGMVRHKAFKNLEELKRHLVEKTPRHVYYSTARYERPWEEDMERK 78

Query: 95  VFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLW 154
            +     +LVFDID  D+ D   C     +   C          L   L E+   +    
Sbjct: 79  GWLGA--DLVFDID-GDHLDTEACRESKVVSLACLEDAKEEANKLIDVLTEELGLKPTKV 135

Query: 155 VFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVK 195
           VFSG RG H  V DE  LAL  + R  L  Y+  +  +P K
Sbjct: 136 VFSGNRGFHVHVVDEEVLALGQKERRELVNYLKAVGFDPSK 176


>gi|395333222|gb|EJF65600.1| hypothetical protein DICSQDRAFT_166603 [Dichomitus squalens
           LYAD-421 SS1]
          Length = 84

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 9/87 (10%)

Query: 42  REFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMK 101
           R F FTL+G +Y RY S+ +P++LKK +    P + ++G +Y    +  ++   F P+++
Sbjct: 7   RNFVFTLHGVVYLRYNSFATPHDLKKQVCAYNPTRFEIGLVY--FARKTVRSVAFAPQLR 64

Query: 102 ELVFDIDMTDYDDVRNCCSGADICEKC 128
           EL+ ++ M D       C  ADIC +C
Sbjct: 65  ELIINMGMFD-------CVTADICCRC 84


>gi|67583585|ref|XP_665001.1| DNA primase small subunit [Cryptosporidium hominis TU502]
 gi|54655294|gb|EAL34771.1| DNA primase small subunit [Cryptosporidium hominis]
          Length = 79

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 51  DIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDI-CPKDHLQHSVFTPKMKELVFDIDM 109
           +IY R+  + + ++LK++++ R P K D+GAIY+I   +  +    F P  +ELVFDIDM
Sbjct: 11  EIYLRWQHFKTIDQLKQEIVARTPHKFDIGAIYNIPISEKEISPLGFKPVQRELVFDIDM 70

Query: 110 TDYDDVR 116
            DYDD++
Sbjct: 71  NDYDDIQ 77


>gi|18313779|ref|NP_560446.1| DNA primase-like protein [Pyrobaculum aerophilum str. IM2]
 gi|34395810|sp|Q8ZTY1.1|PRIS_PYRAE RecName: Full=Probable DNA primase small subunit
 gi|18161337|gb|AAL64628.1| DNA primase related protein [Pyrobaculum aerophilum str. IM2]
          Length = 312

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 19/214 (8%)

Query: 32  FYGNLDNFR-----KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDIC 86
           FY N   F      KREF+F        R+ S+ S  +L+K ++++ P+ I   A Y   
Sbjct: 10  FYRNFAKFEIDAVDKREFAFQPFSGGMVRHKSFKSLEDLRKFVVEKTPRHIYHSAAYYER 69

Query: 87  P-KDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWR-YMSIACKILDTALR 144
           P ++ ++   +     +L+FDID  D+ D   C     +  +C       A K++D  ++
Sbjct: 70  PGEEDMERKGWIGA--DLIFDID-GDHLDTEACRESKIVSLRCLEDAREEANKLIDVLIQ 126

Query: 145 EDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPV--------KK 196
           E  D +    VFSG RG H  V  E  + L  R R  L  Y+  +  +P         +K
Sbjct: 127 E-LDLKPTRIVFSGNRGFHIHVSSEEVMKLGSRERRELVNYLKAVGFDPSRFIAKLGRRK 185

Query: 197 VFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLS 230
           V L  +    +L R K  +ED     +E  E+++
Sbjct: 186 VVLYEEEAVGNLLRIKQGVEDARAMKVEIDEVVT 219


>gi|379003306|ref|YP_005258978.1| DNA primase, eukaryotic-type, small subunit, putative [Pyrobaculum
           oguniense TE7]
 gi|375158759|gb|AFA38371.1| DNA primase, eukaryotic-type, small subunit, putative [Pyrobaculum
           oguniense TE7]
          Length = 312

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 11/171 (6%)

Query: 32  FYGNLDNF-----RKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKI-DLGAIYDI 85
           FY N   F      +REF+F   G    R+ S+NS +EL++ ++++ P+ I    A Y+ 
Sbjct: 10  FYRNYAKFDVVYVERREFAFQPFGGGIVRHKSFNSVDELRRYIVEKTPRHIYHSVAYYER 69

Query: 86  CPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWR-YMSIACKILDTALR 144
             +D +    +     +LVFDID  D+ +   C     +  +C         K++D  +R
Sbjct: 70  PGEDDMDRKGWLG--ADLVFDID-GDHLNTEACKGSVVVSLRCLEDAKEETNKLIDILVR 126

Query: 145 EDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVK 195
           E  D +    VFSG RG H  +  E  L L  R R  +  ++  +  +P +
Sbjct: 127 E-LDLRPTRIVFSGNRGFHIHITSEEVLKLGARERREVVNFIKGIGFDPSR 176


>gi|392896162|ref|NP_001255016.1| Protein PRI-1, isoform b [Caenorhabditis elegans]
 gi|345109015|emb|CCD31084.1| Protein PRI-1, isoform b [Caenorhabditis elegans]
          Length = 117

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 29/35 (82%)

Query: 293 ILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
            +L+  YPRLD++VS G NHLLKSPFC+HPKTG +
Sbjct: 12  FVLQRCYPRLDVNVSTGTNHLLKSPFCIHPKTGNV 46


>gi|145591988|ref|YP_001153990.1| DNA primase, small subunit [Pyrobaculum arsenaticum DSM 13514]
 gi|166223388|sp|A4WLS1.1|PRIS_PYRAR RecName: Full=Probable DNA primase small subunit
 gi|145283756|gb|ABP51338.1| DNA primase small subunit [Pyrobaculum arsenaticum DSM 13514]
          Length = 312

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 11/171 (6%)

Query: 32  FYGNLDNF-----RKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKI-DLGAIYDI 85
           FY N   F      +REF+F   G    R+ S+NS +EL++ ++++ P+ I    A Y+ 
Sbjct: 10  FYRNYAKFDVVSVERREFAFQPFGGGMVRHKSFNSVDELRRYIVEKTPKHIYHSVAYYER 69

Query: 86  CPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWR-YMSIACKILDTALR 144
             ++ +    +     +LVFDID  D+ +   C   A +  +C         K++D  +R
Sbjct: 70  PGEEDMDRKGWLG--ADLVFDID-GDHLNTEACKGSAVVSLRCLEDAKEETNKLIDILVR 126

Query: 145 EDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVK 195
           E  D +    VFSG RG H  +  E  L L  + R  +  ++  +  +P +
Sbjct: 127 E-LDLRPTRIVFSGNRGFHIHITSEEVLKLGTKERREVVNFIKGVGFDPSR 176


>gi|395324740|gb|EJF57175.1| hypothetical protein DICSQDRAFT_174234 [Dichomitus squalens
           LYAD-421 SS1]
          Length = 130

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 42  REFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMK 101
           R+F FTL+G +Y RY S+ +P++LKK +      + ++G +Y       ++   F P+++
Sbjct: 54  RDFMFTLHGVVYLRYNSFATPHDLKKQVCAYNLTRFEIGLVYF---ARTVRSVAFAPQLR 110

Query: 102 ELVFDIDMTDYDDVRNCCSGADICEKC 128
           EL+ ++ M D       C  ADIC +C
Sbjct: 111 ELIINMGMFD-------CVTADICCRC 130


>gi|390961069|ref|YP_006424903.1| DNA primase small subunit [Thermococcus sp. CL1]
 gi|390519377|gb|AFL95109.1| DNA primase small subunit [Thermococcus sp. CL1]
          Length = 343

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 89/233 (38%), Gaps = 30/233 (12%)

Query: 102 ELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRG 161
           ELVFDID  D    R       +C  C        +     L+EDF F+ +  V+SGR G
Sbjct: 93  ELVFDIDAKDLPLRRCNHEHGKVCPICLEDAKELARDTLIVLKEDFGFEKVHVVYSGR-G 151

Query: 162 IHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK 221
            H  V DE A+ LDGR R  +  Y+S         +     +L     R   +    F K
Sbjct: 152 YHIRVLDEWAMKLDGRAREKVLAYVSAAEEVSFDDIGSRRIMLSSGYYRVFRLRFGYFLK 211

Query: 222 LLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIG------PGQDVEKWDRLVAIIK 275
            + E  LL+   R+ +V  L+     R +I + + R G      PG   +   RL A+  
Sbjct: 212 RMNENHLLNLGLRKGQVERLIQ---AREDIYEGFVRKGLLTAFPPGVGYKTLTRLFALSS 268

Query: 276 HHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
                                 AY   D  V+  V  +L+ P  +H K G + 
Sbjct: 269 TFSK------------------AY--FDGRVTVDVKRILRLPSSLHSKVGLVA 301


>gi|119871951|ref|YP_929958.1| DNA primase, small subunit [Pyrobaculum islandicum DSM 4184]
 gi|166223390|sp|A1RRN3.1|PRIS_PYRIL RecName: Full=Probable DNA primase small subunit
 gi|119673359|gb|ABL87615.1| DNA primase small subunit [Pyrobaculum islandicum DSM 4184]
          Length = 312

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 4/162 (2%)

Query: 35  NLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKI-DLGAIYDICPKDHLQH 93
           ++D   KREF+F        R+ ++ +  ELKK +I++ P+ I    A Y+   ++ ++ 
Sbjct: 18  DIDAVEKREFAFQYFEGGIVRHRAFKTLEELKKFVIEKTPRHIYHSSAYYERPGEEDMER 77

Query: 94  SVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLL 153
             +     +L+FDID  D+ D   C     +   C          L   L  +   +   
Sbjct: 78  KGWLGA--DLIFDID-GDHLDTEACRESKLVSIACLNDAKEEANKLIDVLTGELGLKPRR 134

Query: 154 WVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVK 195
            VFSG RG H  V +E  L L  + R  L  Y+  +  +P +
Sbjct: 135 VVFSGNRGFHIHVSEEEVLTLGAKERRELVNYLKAVGFDPSR 176


>gi|149605755|ref|XP_001520432.1| PREDICTED: retinol dehydrogenase 16-like, partial [Ornithorhynchus
           anatinus]
          Length = 192

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 34/46 (73%)

Query: 39  FRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYD 84
           F+ REFSFTL  D+Y RY S+++  EL+K++ K  P KID+GA+Y 
Sbjct: 145 FQHREFSFTLKDDVYIRYQSFSTQAELEKEMQKLSPYKIDVGAVYS 190


>gi|407033594|gb|EKE36892.1| DNA primase small subunit, putative [Entamoeba nuttalli P19]
          Length = 87

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 27/36 (75%)

Query: 293 ILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           I+    YPR+D +VS  +NHLLK+PFC+HP T K+C
Sbjct: 3   IVFTYLYPRIDTNVSVQLNHLLKAPFCIHPSTNKVC 38


>gi|11498348|ref|NP_069576.1| DNA primase [Archaeoglobus fulgidus DSM 4304]
 gi|2649873|gb|AAB90500.1| DNA primase, putative [Archaeoglobus fulgidus DSM 4304]
          Length = 360

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 117/296 (39%), Gaps = 65/296 (21%)

Query: 39  FRKREFSFT----LNGDIYARYISYNSPNELKKDLIKRCPQKIDLG-AIYDICPKDHLQH 93
           F+ REF+F     L   +  R+IS+ S  + +  ++   P  I    A Y+   +D +++
Sbjct: 51  FKNREFAFVPLELLPDFVMHRHISFRSETDFRAYILSNVPAHIYFSSAYYERPAEDKMEN 110

Query: 94  SVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLL 153
             +     +L+FDID  D+  V+     A   EK         K L   LR DF  + + 
Sbjct: 111 KGWLGA--DLIFDID-ADHLPVK-----AQSFEKALEMAKREIKKLTAVLRADFGIRDMK 162

Query: 154 WVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKL 213
             FSG RG H  V DE  L+L    R  + +Y+                     L   K+
Sbjct: 163 IYFSGGRGYHVHVHDEEFLSLGSAERREIVDYL--------------------RLNSPKI 202

Query: 214 IIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAI 273
           ++ED+F          +      +VL       +R ++E++             +RL + 
Sbjct: 203 VVEDRF----------ANSNAAKRVLNY-----LRKKLEED-------------ERLTSK 234

Query: 274 IKHHQAKNSDRKLKYAIEEILLELAYPRLDIH----VSKGVNHLLKSPFCVHPKTG 325
           +K   A     KL   +   + +  Y  L I+    V+  V  L++ P  +H KTG
Sbjct: 235 LKIKPADLKKEKLTKKVIRAVEKFDYSALSIYIDAPVTADVKRLIRLPGSLHGKTG 290


>gi|389860782|ref|YP_006363022.1| DNA primase, small subunit [Thermogladius cellulolyticus 1633]
 gi|388525686|gb|AFK50884.1| DNA primase, small subunit [Thermogladius cellulolyticus 1633]
          Length = 388

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 35/180 (19%)

Query: 38  NFRKREFSFT-LNGDIYARYISYNSPNELKKDLIKRCPQKIDL-----GAIYDICPKDHL 91
           N   RE +   L  + Y R++S+ S  +L   ++    QK  L      A+YD    +++
Sbjct: 29  NLHSREIALVDLESEAYVRHLSFPSMAQLYHFIVD---QKTPLHLYYSSAVYDDPSAENM 85

Query: 92  QHSVFTPKMKELVFDIDMTDY------------------DDVRNCCSGADICE------K 127
             S+   K  EL+FDID+                     +    C SG++  E      +
Sbjct: 86  --SMKGWKGSELIFDIDVDHLPGCDLKLKVCVEDNSVLGEHTEKCPSGSEPVEVSVIEPE 143

Query: 128 CWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMS 187
           C+R        L   L EDF F+ +   FSG RG H  V D++AL L    R+ +A+Y+S
Sbjct: 144 CFRKGLGEASKLREILEEDFGFKDVKVYFSGHRGFHVRVSDDSALDLTREARASIADYVS 203


>gi|148642135|ref|YP_001272648.1| DNA primase small subunit [Methanobrevibacter smithii ATCC 35061]
 gi|166223387|sp|A5UJA2.1|PRIS_METS3 RecName: Full=Probable DNA primase small subunit
 gi|148551152|gb|ABQ86280.1| DNA primase, small subunit [Methanobrevibacter smithii ATCC 35061]
          Length = 324

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 118/299 (39%), Gaps = 33/299 (11%)

Query: 36  LDNFRKREFSFTLNG-DIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHS 94
           L + +KREF F  NG     RY  +     LKK L  + P    +   +   P+      
Sbjct: 28  LKDLKKREFGFDHNGKGPNDRYKVFRGSESLKKFLRYKAPFAAYISVAFYNNPRRREDW- 86

Query: 95  VFTPKMKELVFDIDMTDYDDVRNC-CSGADICEKCW-RYMSIACKILDTALREDFDFQLL 152
               +  E +FD+D  D   +R+C C G  +CE C  + + I   ++DT L++D     +
Sbjct: 87  ----QKAEYIFDVDAKDI-PIRSCQCDG--VCEVCLGQALEIVNSLIDT-LQDDLGLNNI 138

Query: 153 LWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAK 212
             V+SG RG H  + DE  +      RS + +Y  V  A   K  F   D+ +       
Sbjct: 139 HLVYSG-RGYHIRILDEEMMTSGSELRSEVLKY--VAGAEVPKSNFFNPDISNKSFNFEH 195

Query: 213 LIIEDQFEKLLEEQELLSTKERQTKVLGLVSN---GDIRAEIEKEWTRIGPGQDVEKWDR 269
             I   + K+        T + +  +  LV N    +I  ++ K+  +     D + W  
Sbjct: 196 FSIPVGYSKIF-------TDKLKYNIQHLVGNEELDEINPKLMKDIIKYRHHLDNDNWGY 248

Query: 270 LVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
               I   + KN        + E +  +    +D  VS  +  +L+ P  +H K    C
Sbjct: 249 FKRDIGPRRYKN--------LTEAMARVNLSTIDAKVSIDLKRILRLPSSLHSKVSMKC 299


>gi|34395917|sp|O29516.2|PRIS_ARCFU RecName: Full=Probable DNA primase small subunit
          Length = 335

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 117/296 (39%), Gaps = 65/296 (21%)

Query: 39  FRKREFSFT----LNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICP-KDHLQH 93
           F+ REF+F     L   +  R+IS+ S  + +  ++   P  I   + Y   P +D +++
Sbjct: 26  FKNREFAFVPLELLPDFVMHRHISFRSETDFRAYILSNVPAHIYFSSAYYERPAEDKMEN 85

Query: 94  SVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLL 153
             +     +L+FDID  D+  V+     A   EK         K L   LR DF  + + 
Sbjct: 86  KGWLGA--DLIFDID-ADHLPVK-----AQSFEKALEMAKREIKKLTAVLRADFGIRDMK 137

Query: 154 WVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKL 213
             FSG RG H  V DE  L+L    R  + +Y+                     L   K+
Sbjct: 138 IYFSGGRGYHVHVHDEEFLSLGSAERREIVDYL--------------------RLNSPKI 177

Query: 214 IIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAI 273
           ++ED+F          +      +VL       +R ++E++             +RL + 
Sbjct: 178 VVEDRF----------ANSNAAKRVLNY-----LRKKLEED-------------ERLTSK 209

Query: 274 IKHHQAKNSDRKLKYAIEEILLELAYPRLDIH----VSKGVNHLLKSPFCVHPKTG 325
           +K   A     KL   +   + +  Y  L I+    V+  V  L++ P  +H KTG
Sbjct: 210 LKIKPADLKKEKLTKKVIRAVEKFDYSALSIYIDAPVTADVKRLIRLPGSLHGKTG 265


>gi|255513592|gb|EET89858.1| DNA primase, small subunit [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 381

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 125/315 (39%), Gaps = 50/315 (15%)

Query: 36  LDNFRKREFSFT-LNGDIYARYISYNSPNELKKDLIKRCPQKID-LGAIYDICPKDHLQH 93
           +D    REF F      I  R+ ++ S  +L K +++  P  I    + Y+      ++ 
Sbjct: 24  VDKVANREFGFGDFERKIKYRHYAFGSNADLNKFIVENVPPFISCSSSFYEYPAARPMEK 83

Query: 94  SVFTPKMKELVFDIDMTDYDDVRNCCSGAD-ICEKCWRYMSI-ACKILDTALREDFDFQ- 150
            V+  K  E+VFD+D TD         G   +C +C   +   A K+++  L  DF F+ 
Sbjct: 84  KVW--KGSEMVFDLDATDLKLPCQQVHGTSWVCSECLSGIKAEAIKLIEDFLVPDFGFEE 141

Query: 151 -LLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFL---------- 199
             L   FSG RG H  V DE  ++L+   R  +++Y   +T N +  +            
Sbjct: 142 KRLHINFSGNRGYHIRVADERVISLNSAERKQISDY---ITGNGINALSFFPSISERGAQ 198

Query: 200 ------TGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEK 253
                 T       + R  +   +   K   E  LL  ++++ ++L            EK
Sbjct: 199 LRGPRPTDGGWGGRIARGTI---NALNKGAGELALLGIEKKEARLL------------EK 243

Query: 254 EWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHL 313
               I  G  V  WD+ V I K  Q       L   + + +       +D +V+   +HL
Sbjct: 244 HRADIILGISVGNWDK-VKISKKSQ-------LWANLIKGMTVRQGDSIDKNVTDDTHHL 295

Query: 314 LKSPFCVHPKTGKIC 328
           L+ P  +H  TG + 
Sbjct: 296 LRVPDTLHGDTGLVS 310


>gi|261350778|ref|ZP_05976195.1| putative DNA primase, eukaryotic-type, small subunit
           [Methanobrevibacter smithii DSM 2374]
 gi|288860533|gb|EFC92831.1| putative DNA primase, eukaryotic-type, small subunit
           [Methanobrevibacter smithii DSM 2374]
          Length = 324

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 118/299 (39%), Gaps = 33/299 (11%)

Query: 36  LDNFRKREFSFTLNGD-IYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHS 94
           L + +KREF F  NG     RY  +     LKK L  + P    +   +   P+      
Sbjct: 28  LKDLKKREFGFDHNGKGPNDRYKVFRGRESLKKFLRYKAPFAAYISVAFYNNPRRREDW- 86

Query: 95  VFTPKMKELVFDIDMTDYDDVRNC-CSGADICEKCW-RYMSIACKILDTALREDFDFQLL 152
               +  E +FD+D  D   +R+C C G  +CE C  + + I   ++DT L++D     +
Sbjct: 87  ----QKAEYIFDVDAKDI-PIRSCQCDG--VCEVCLGQALEIVNSLIDT-LQDDLGLNNI 138

Query: 153 LWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAK 212
             V+SG RG H  + DE  +      RS + +Y  V  A   K  F   D+ +       
Sbjct: 139 HLVYSG-RGYHIRILDEEMMTSGSELRSEVLKY--VAGAEVPKSNFFNPDISNKSFNFEH 195

Query: 213 LIIEDQFEKLLEEQELLSTKERQTKVLGLVSN---GDIRAEIEKEWTRIGPGQDVEKWDR 269
             I   + K+        T + +  +  LV N    +I  ++ K+  +     D + W  
Sbjct: 196 FSIPVGYSKIF-------TDKLKYNIQHLVGNEELDEINPKLMKDIIKYRHHLDNDNWGY 248

Query: 270 LVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
               I   + KN        + E +  +    +D  VS  +  +L+ P  +H K    C
Sbjct: 249 FKRDIGPRRYKN--------LTEAMARVNLSTIDAKVSIDLKRILRLPSSLHSKVSMKC 299


>gi|70937185|ref|XP_739433.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56516431|emb|CAH80616.1| hypothetical protein PC000127.04.0 [Plasmodium chabaudi chabaudi]
          Length = 125

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 53/108 (49%), Gaps = 21/108 (19%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLDN-----------FRKREFSFTLNG------DIYARY 56
           L FYY+ + P      WL Y N +N           F KREFSFT         +IY R+
Sbjct: 19  LIFYYRNLCPITDLCNWLNYKNDNNGKYTRLNDPNFFSKREFSFTCKKSDQGKEEIYMRW 78

Query: 57  ISYNSPNELKKDLIKR-CPQKIDLGAIYD--ICPKDHLQHSVFTPKMK 101
           +S+NS NE K  L+    P K D+GA+Y+  +  KD  +  +F P  K
Sbjct: 79  LSFNSANEFKDKLLSNFVPIKFDIGAVYNYPVSQKDQ-KGDLFRPIQK 125


>gi|440493665|gb|ELQ76106.1| Eukaryotic-type DNA primase, catalytic (small) subunit
           [Trachipleistophora hominis]
          Length = 177

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 111 DYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEA 170
           D +DV  C    ++C +C   M+    +L   L ++F F  +++ FSG +G HC+V D +
Sbjct: 34  DLNDVHVC---DNLCNECIAQMNKLIDLLKKILTDNFGFSHVIFFFSGNKGFHCYVTDAS 90

Query: 171 ALALDGRGRSCLAEYM 186
           A    G  R  +A Y+
Sbjct: 91  ARHFTGIVRQSVASYL 106



 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 16/27 (59%), Positives = 23/27 (85%)

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +D +V++ V HLLK+PFCVHPK+G +C
Sbjct: 113 VDENVTRDVKHLLKAPFCVHPKSGYVC 139


>gi|385806136|ref|YP_005842534.1| DNA primase small subunit [Fervidicoccus fontis Kam940]
 gi|383795999|gb|AFH43082.1| DNA primase small subunit [Fervidicoccus fontis Kam940]
          Length = 389

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 41/203 (20%)

Query: 37  DNFRKREFSFT-LNGDIYARYISYNSPNELKKDLIKRCPQKIDLG-AIYDICPKDHLQHS 94
           D+   REF+   ++   Y R++S+ S +EL+  L+K  P  +    AIY     D ++  
Sbjct: 37  DDINSREFAVQPIDYKGYVRHLSFKSEDELRSFLLKNPPMHLYYSSAIYTFPEIDDMEKK 96

Query: 95  VFTPKMKELVFDIDMTDYDDVRNC--------------------------CSGADICE-- 126
                  E++FDID    D+V  C                          C   ++ E  
Sbjct: 97  GMIGS--EIIFDIDA---DEVPGCESIEQLHACLNCGSLLYGKSIKKCTKCGSQNVIEVE 151

Query: 127 ----KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSC 181
               +C     I  K L   LR+DF F+ +   FSG RG H    CD+  L L    RS 
Sbjct: 152 PIPKECILKAGIEAKKLIKVLRKDFGFEKIKIYFSGNRGFHVHPKCDDEWLKLTSEERSM 211

Query: 182 LAEYMSVLTANPVKKVFLTGDVL 204
           + +Y++    N ++++   G+ +
Sbjct: 212 IIKYITGSGVN-IERIIGLGESI 233


>gi|375084309|ref|ZP_09731314.1| DNA primase small subunit [Thermococcus litoralis DSM 5473]
 gi|374740945|gb|EHR77378.1| DNA primase small subunit [Thermococcus litoralis DSM 5473]
          Length = 344

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 66/161 (40%), Gaps = 23/161 (14%)

Query: 36  LDNFRKREFSFTLNGDIYARYISYNSPNELKKDL--IKRCPQKIDLGAIYDICPKDHLQH 93
           LD    REF F   G+          PN+ K     +K     + + A Y I     L  
Sbjct: 31  LDTLESREFGFDHTGE---------GPNDRKNVFQDVKDLEDYVKITAPYSIYSSVALYS 81

Query: 94  SVFTPKM------KELVFDIDMTDYDDVRNCCSGA-DICEKCWRYMSIACKILDTALRED 146
               PK        ELVFDID  D   ++ C   A  +C  C        +     LRED
Sbjct: 82  D---PKNMSGWLGAELVFDIDAKDLP-LKMCSHEAGTVCPICLEDAKELARDTLVILRED 137

Query: 147 FDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMS 187
           F F+ +  V+SGR G H  V D+ AL LD + R  +  Y+S
Sbjct: 138 FGFENIHVVYSGR-GYHIRVLDDWALELDSKARERILSYIS 177


>gi|315231435|ref|YP_004071871.1| DNA primase small subunit [Thermococcus barophilus MP]
 gi|315184463|gb|ADT84648.1| DNA primase small subunit [Thermococcus barophilus MP]
          Length = 345

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 102 ELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRG 161
           ELVFDID  D    R       +C  C        K     L+EDF F+ +  V+SG RG
Sbjct: 93  ELVFDIDAKDLPLRRCNHESGTVCPICLEDAKELAKDTLIVLKEDFGFEDIHIVYSG-RG 151

Query: 162 IHCWVCDEAALALDGRGRSCLAEYMS 187
            H  V DE AL LD + R  +  Y S
Sbjct: 152 YHIRVLDEWALELDSKAREKILAYTS 177


>gi|257053814|ref|YP_003131647.1| DNA primase small subunit [Halorhabdus utahensis DSM 12940]
 gi|256692577|gb|ACV12914.1| DNA primase, small subunit [Halorhabdus utahensis DSM 12940]
          Length = 386

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 112/304 (36%), Gaps = 61/304 (20%)

Query: 56  YISY-NSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTP---------------- 98
           YI + +SP E     + R    +D+G +     ++  +H  F+                 
Sbjct: 35  YIPWTDSPGET----MVRHQSLLDMGDLESFLARERPRHVYFSAGRYTDPGAGSMSAKDW 90

Query: 99  KMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACK-----ILDTALREDFDFQLLL 153
           +  ++VFD+D        +     D  +  +  M  ACK     +LD  L  DF F+ L 
Sbjct: 91  RGSDVVFDLDA-------DHLPSVDPTQATYAEMLAACKDALFRLLDF-LENDFGFEDLT 142

Query: 154 WVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM------------SVLTANPVKKVFLTG 201
            VFSG RG H  V D+    L+   R  + +Y+            + +  N   +   T 
Sbjct: 143 IVFSGGRGYHVHVRDDGIQQLEREARREIVDYVRGIGLDLDGLVTTEMRGNVTARTLRTE 202

Query: 202 DVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPG 261
                 +  A L   D+ E L EEQ +  T+ +  + +G      IR  IE+    I  G
Sbjct: 203 GGWGKRVHEALLAFVDEVEALPEEQAM--TRLQDLEGIGEGRAKTIRGAIEENREAIEDG 260

Query: 262 QDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVH 321
                                 RKL  AI   ++E     +D  V+   N L++ P  +H
Sbjct: 261 -------------NMEAGGPGIRKLVEAITGDVIEGQNAPIDEPVTTDTNRLIRLPGSLH 307

Query: 322 PKTG 325
             +G
Sbjct: 308 GGSG 311


>gi|337285114|ref|YP_004624588.1| DNA primase small subunit [Pyrococcus yayanosii CH1]
 gi|334901048|gb|AEH25316.1| DNA primase small subunit [Pyrococcus yayanosii CH1]
          Length = 345

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 64/154 (41%), Gaps = 7/154 (4%)

Query: 36  LDNFRKREFSFTLNGDIYA-RYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHS 94
           L+   +REF F   G+  + R  SY+   +L+  +    P      A+Y           
Sbjct: 29  LETLERREFGFDHTGEGPSDRKNSYSDIRDLEDYIKATAPY-----AVYSSVALYERPSE 83

Query: 95  VFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLW 154
           +      ELVFDID  D    R       +C  C        +   T LRED  F+ +  
Sbjct: 84  MEGWLGTELVFDIDAKDLPLKRCNHEPGTVCPICLNDARELARDTLTVLREDLGFEDIHV 143

Query: 155 VFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSV 188
           V+SG RG H  + DE AL LD + R  L  ++S 
Sbjct: 144 VYSG-RGYHIRILDEWALKLDAKARERLLAFVST 176


>gi|242399741|ref|YP_002995166.1| Probable DNA primase small subunit [Thermococcus sibiricus MM 739]
 gi|259534483|sp|C6A5C2.1|PRIS_THESM RecName: Full=Probable DNA primase small subunit
 gi|242266135|gb|ACS90817.1| Probable DNA primase small subunit [Thermococcus sibiricus MM 739]
          Length = 342

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 102 ELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRG 161
           ELVFDID  D    R       +C  C        K     LREDF F+ +  ++SGR G
Sbjct: 93  ELVFDIDAKDLPLKRCNHETGKVCPICLDDAKELTKDTLLILREDFGFENIHLIYSGR-G 151

Query: 162 IHCWVCDEAALALDGRGRSCLAEYMS 187
            H  V D+ AL LD + R  +  Y+S
Sbjct: 152 YHIRVLDDWALGLDSKAREKILSYIS 177


>gi|399576608|ref|ZP_10770363.1| DNA primase small subunit [Halogranum salarium B-1]
 gi|399238052|gb|EJN58981.1| DNA primase small subunit [Halogranum salarium B-1]
          Length = 386

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 128/351 (36%), Gaps = 104/351 (29%)

Query: 38  NFRKREFSFTLNGDIYARYISYNSPNELKKD------------LIKRCPQKIDLGAIYDI 85
           + R RE+     GD Y R +    P+   ++             + R    ++LG I D 
Sbjct: 2   DARTREYLKGRFGDYYRRAVVTPPPDADAREWGYIPWTAGAGTTMVRHESLLNLGHIGDF 61

Query: 86  CPKDHLQHSVFTP----------------KMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             ++  +H+ F+                 +  +LVFD+D        +     D     +
Sbjct: 62  LAREAPRHAYFSAARYTDPSANTMSDKDWRSADLVFDLDA-------DHIPAIDPEGTSY 114

Query: 130 RYMSIACK-----ILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAE 184
           + M  ACK     +LD  L +DF F+ L  VFSG RG H  V DE    LD   R  + +
Sbjct: 115 KGMLTACKQSLLRLLDI-LEDDFAFEELEIVFSGGRGYHVHVRDEGVRELDSEARREIVD 173

Query: 185 YMSVL------------TANPVKKVFLT----GDVLHPHLKRAKLIIEDQFEKLLEEQEL 228
           Y+  +            +    ++V  T    G   H  L    L   D+ + + EE+ L
Sbjct: 174 YIRAIDLDVDGLVRTRASGPTTQRVLRTEGGWGKRTHDRL----LAFVDELQSMTEEEAL 229

Query: 229 LSTKE-------RQTKVLG-------LVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAII 274
              +E       R T +LG        +  G++ A         GPG  +     LV  +
Sbjct: 230 ERLQELDGIGEGRATTILGAFERNPQAIETGNVEAG--------GPGLRM-----LVEAL 276

Query: 275 KHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTG 325
            H               E++ +   P +D  V+  +  L++ P  +H  TG
Sbjct: 277 AH---------------EVVEDQTAP-IDEPVTTDLRRLIRLPGSLHGGTG 311


>gi|57641726|ref|YP_184204.1| DNA primase small subunit [Thermococcus kodakarensis KOD1]
 gi|73921772|sp|Q5JJ72.1|PRIS_PYRKO RecName: Full=Probable DNA primase small subunit
 gi|57160050|dbj|BAD85980.1| eukaryotic-type DNA primase, small subunit [Thermococcus
           kodakarensis KOD1]
          Length = 346

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 102 ELVFDIDMTDYDDVRNCCS---GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSG 158
           ELVFDID  D   +R C +      +C  C        +     L+EDF F+ +  V+SG
Sbjct: 93  ELVFDIDAKDLP-LRRCQNEHPSGQVCPICLEDAKELARDTLIILKEDFGFENIHVVYSG 151

Query: 159 RRGIHCWVCDEAALALDGRGRSCLAEYMSV---LTANPVKKVFL 199
           R G H  V DE AL LD + R  +  Y+S    +T + ++K ++
Sbjct: 152 R-GYHIRVIDEWALKLDSKARERILSYVSAAEEVTFDDIQKRYI 194


>gi|448611870|ref|ZP_21662300.1| DNA primase small subunit [Haloferax mucosum ATCC BAA-1512]
 gi|445742631|gb|ELZ94125.1| DNA primase small subunit [Haloferax mucosum ATCC BAA-1512]
          Length = 387

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 19/130 (14%)

Query: 77  IDLGAIYDICPKDHLQHSVFTP----------------KMKELVFDIDMTDYDDVRNCCS 120
           +DLG + D   +   +H  F+                 +  +LVFDID     D+    +
Sbjct: 52  LDLGELSDYLARSAPRHVYFSSARFADPGAATMDDKGWREADLVFDIDADHLPDIDPEAT 111

Query: 121 G-ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGR 179
           G AD+ E   + +     +L+T    DFDF  +  VFSG RG H  V DE+   LD   R
Sbjct: 112 GYADMLEAGKQALLDLLDLLETDF--DFDFDEMQAVFSGGRGYHVHVRDESVRGLDSEAR 169

Query: 180 SCLAEYMSVL 189
             + +Y+  +
Sbjct: 170 REVVDYIRAI 179


>gi|448414116|ref|ZP_21577255.1| DNA primase small subunit [Halosarcina pallida JCM 14848]
 gi|445682409|gb|ELZ34826.1| DNA primase small subunit [Halosarcina pallida JCM 14848]
          Length = 384

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 21/130 (16%)

Query: 77  IDLGAIYDICPKDHLQHSVFTP----------------KMKELVFDIDMTDYDDVR-NCC 119
           +DLG + D   +   +H  F+                 +  +LVFD+D      V     
Sbjct: 52  LDLGDVSDFLARTAPRHVYFSSARFDDPGAGTMEEKDWRSADLVFDLDADHLPGVDPETT 111

Query: 120 SGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGR 179
           S AD+   C   +    + LD    EDFDF+    VFSG RG H  V DE+   LD   R
Sbjct: 112 SYADMLAACKEDLLKLLEFLD----EDFDFRETQVVFSGGRGYHVHVRDESVRGLDSEAR 167

Query: 180 SCLAEYMSVL 189
             + +Y+  +
Sbjct: 168 REIVDYVRAI 177


>gi|363548472|sp|Q973F6.2|PRIS_SULTO RecName: Full=Probable DNA primase small subunit
 gi|342306327|dbj|BAK54416.1| DNA primase small subunit [Sulfolobus tokodaii str. 7]
          Length = 318

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 26/169 (15%)

Query: 42  REFSFT-LNGDIYARYISYNSPNELKKDLIKRCPQKIDL-GAIYDICPKDHLQHSVFTPK 99
           REF++   + + Y R++S++SP EL++ +++  P  +    A Y +     +    +   
Sbjct: 31  REFAYQPFDSETYVRHLSFSSPQELRQYILQNVPLHLYYSSARYQLPSAKEMDEKGWL-- 88

Query: 100 MKELVFDIDMTD--------------YDDVRNCCSG------ADICEKCWRYMSIACKIL 139
             +L+FD+D  +              Y+ + + C+G      A+I  +C   +     ++
Sbjct: 89  GSDLLFDLDADEICEVKVRRFCPQDGYETLASNCNGEPPIEYAEITTECIMKVFEKALLI 148

Query: 140 DTALREDFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYMS 187
              L+EDF     ++ FSG RG H  V C E    LD   R  +AEY +
Sbjct: 149 RDILKEDFGLNARIF-FSGNRGFHLRVTCYEDCALLDPDDRKEIAEYFT 196


>gi|15921179|ref|NP_376848.1| DNA primase small subunit [Sulfolobus tokodaii str. 7]
          Length = 323

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 26/169 (15%)

Query: 42  REFSFT-LNGDIYARYISYNSPNELKKDLIKRCPQKIDL-GAIYDICPKDHLQHSVFTPK 99
           REF++   + + Y R++S++SP EL++ +++  P  +    A Y +     +    +   
Sbjct: 36  REFAYQPFDSETYVRHLSFSSPQELRQYILQNVPLHLYYSSARYQLPSAKEMDEKGWL-- 93

Query: 100 MKELVFDIDMTD--------------YDDVRNCCSG------ADICEKCWRYMSIACKIL 139
             +L+FD+D  +              Y+ + + C+G      A+I  +C   +     ++
Sbjct: 94  GSDLLFDLDADEICEVKVRRFCPQDGYETLASNCNGEPPIEYAEITTECIMKVFEKALLI 153

Query: 140 DTALREDFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYMS 187
              L+EDF     ++ FSG RG H  V C E    LD   R  +AEY +
Sbjct: 154 RDILKEDFGLNARIF-FSGNRGFHLRVTCYEDCALLDPDDRKEIAEYFT 201


>gi|332796929|ref|YP_004458429.1| DNA primase small subunit, PriSL [Acidianus hospitalis W1]
 gi|332694664|gb|AEE94131.1| DNA primase small subunit, PriSL [Acidianus hospitalis W1]
          Length = 313

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 28/175 (16%)

Query: 37  DNFRKREFSFTLNG-DIYARYISYNSPNELKKDLIKRCPQKIDLG-AIYDICPKDHLQHS 94
           D+   REF+    G D Y R++S++SP ELK  +I+  P  +    A Y I     +   
Sbjct: 16  DDMELREFAIQPFGKDTYVRHLSFSSPLELKNFIIENLPLHLFYSTAKYQIPSAKEMDEK 75

Query: 95  VFTPKMKELVFDIDMTDYDDVR--NCCS--GADI-CEKCWR-------YMSIACKILDTA 142
            +     +L FDID  +  +VR  N C   G+++  EKC +       +  I    ++ A
Sbjct: 76  GWMG--ADLQFDIDADELCEVRKINFCPVCGSEVDGEKCPKDNVETVEFTEITSDCINKA 133

Query: 143 ----------LREDFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYM 186
                     L+EDF     L+ FSG RG H +V C      LD   R  + +Y+
Sbjct: 134 LENALIIKDILKEDFGLNPELY-FSGNRGFHVYVRCSGDCALLDSEDRKEIVDYI 187


>gi|328853440|gb|EGG02579.1| hypothetical protein MELLADRAFT_91280 [Melampsora larici-populina
           98AG31]
          Length = 207

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%)

Query: 39  FRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKD 89
           F  +EF+ TL  + Y RY SY S  +L+KD+I+  P + ++G  Y   PKD
Sbjct: 156 FTHQEFAVTLQNEAYRRYNSYASHVKLQKDVIRSNPTRFEIGPAYTAQPKD 206


>gi|448731252|ref|ZP_21713555.1| DNA primase small subunit [Halococcus saccharolyticus DSM 5350]
 gi|445792846|gb|EMA43447.1| DNA primase small subunit [Halococcus saccharolyticus DSM 5350]
          Length = 392

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 26/177 (14%)

Query: 27  YLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDIC 86
           YLR  F    D++R+ E +   + D  AR   Y          + R    +DLG + D  
Sbjct: 8   YLRGRFR---DHYRRTEPTPPPDAD--AREWGYIPWTSSPGTTMVRHKSILDLGDLGDFL 62

Query: 87  PKDHLQHSVFTP----------------KMKELVFDIDMTDYDDVR-NCCSGADICEKCW 129
            ++  +H  F+                 +  +LVFD+D      V     S A++ EKC 
Sbjct: 63  ARERPRHVYFSAGRYDDPDAGNMEEKGWQGSDLVFDLDADHLPSVELGEDSYAEMLEKCK 122

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
             +    ++LD  L +DFDFQ L  VFSG RG H  V D+    L+   R  + +Y+
Sbjct: 123 DAL---LRLLDF-LEDDFDFQELDVVFSGGRGYHVHVRDDGIQDLERDARREIVDYV 175


>gi|257077008|ref|ZP_05571369.1| DNA primase small subunit [Ferroplasma acidarmanus fer1]
          Length = 374

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 130/322 (40%), Gaps = 47/322 (14%)

Query: 27  YLRWLFYGNL----DNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAI 82
           Y R  +Y N     D   +RE  F        R+  ++S NE++  + +  P+ +   + 
Sbjct: 3   YFREYYYKNHLGIPDMLFQREIGFIPFNGTMIRHKKFDSQNEIENFVRRAIPRHLYYSSS 62

Query: 83  YDICPKDHLQHSVFTPKM--KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILD 140
           Y   P    QH +   +    EL+FD+D        +   GAD       YM I  ++  
Sbjct: 63  YYRFPD---QHKMLEKEWLGAELIFDLDA-------DHIEGAD----KMTYMEILAEVKK 108

Query: 141 TALR------EDFDFQL--LLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTAN 192
             LR      +DF F+   +   FSG RG H  V  +    +D   R  + +Y+ +   N
Sbjct: 109 HTLRLLEMLMDDFGFEEKNIRLYFSGGRGYHVHVESDRIYTMDSDSRREIGDYIKIEGLN 168

Query: 193 PVKKVFLTGDVLHPH--LKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAE 250
            ++ + L  D    +  LK+  + I + +  L          E   K +   S  +    
Sbjct: 169 -MEDLKLLDDSYFEYGILKKFNIYISNFYRNL---------DENYIKKVFPKSWWNYLEY 218

Query: 251 IEKEWT--RIGPGQDVEKWDRLVAIIKHHQAKNS-----DRKLKYAIEEILLELAYPRLD 303
           +EK +   +I      EK ++   +IK +++  +     DR +   I E     A   +D
Sbjct: 219 LEKYYNGEKIRDFLSNEKGNKFKLLIKQNKSNENASIDYDRIILGKILEDFKSNALAEID 278

Query: 304 IHVSKGVNHLLKSPFCVHPKTG 325
             V+  ++ L++ P+ +H KTG
Sbjct: 279 EPVTTDIHRLIRFPYSLHGKTG 300


>gi|84488915|ref|YP_447147.1| DNA primase small subunit [Methanosphaera stadtmanae DSM 3091]
 gi|121717355|sp|Q2NI23.1|PRIS_METST RecName: Full=Probable DNA primase small subunit
 gi|84372234|gb|ABC56504.1| DNA primase, small subunit [Methanosphaera stadtmanae DSM 3091]
          Length = 324

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 102 ELVFDIDMTDYDDVRNC-CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRR 160
           ELVFD+D  D   +R C C+  ++CEKC         ++   L  DF    +  ++SG R
Sbjct: 93  ELVFDVDAKDIP-IRTCDCAEGEVCEKCLNQAKEIVLMIRDVLSGDFGLTNINLIYSG-R 150

Query: 161 GIHCWVCDEAALALDGRGRSCLAEYMS 187
           G H  V DE  +      R  + +Y++
Sbjct: 151 GYHVRVLDEDVMDASSELRGDIIQYVT 177


>gi|341582356|ref|YP_004762848.1| DNA primase small subunit [Thermococcus sp. 4557]
 gi|340810014|gb|AEK73171.1| DNA primase small subunit [Thermococcus sp. 4557]
          Length = 346

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 102 ELVFDIDMTDYDDVRNCC---SGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSG 158
           ELVFDID  D   +R C        +C  C        +     L+EDF F+ +  ++SG
Sbjct: 93  ELVFDIDAKDLP-LRRCSHLHEHGRVCPICLEDAKELARDTLVILKEDFGFEDVHVIYSG 151

Query: 159 RRGIHCWVCDEAALALDGRGRSCLAEYMSV 188
           R G H  V D+ AL L+G+ R  +  Y+S 
Sbjct: 152 R-GYHIRVLDDWALKLEGKAREKVLAYISA 180


>gi|385804097|ref|YP_005840497.1| DNA primase small subunit [Haloquadratum walsbyi C23]
 gi|339729589|emb|CCC40859.1| DNA primase small subunit [Haloquadratum walsbyi C23]
          Length = 385

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 99  KMKELVFDIDMTDYDDVR-NCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFS 157
           +  +L+FD+D      V  +  S AD+   C   +    + +D    +DF+F     VFS
Sbjct: 90  QSADLIFDLDADHLPGVNPDTTSYADMLTACKTELQTLLEFID----DDFNFDETQVVFS 145

Query: 158 GRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTAN 192
           G RG H  V DE   +LD   R  + +Y+  +  N
Sbjct: 146 GGRGYHVHVRDEQVRSLDSAARREIVDYIRAIDLN 180


>gi|76802629|ref|YP_330724.1| DNA primase small subunit [Natronomonas pharaonis DSM 2160]
 gi|90185253|sp|Q3IP66.1|PRIS_NATPD RecName: Full=Probable DNA primase small subunit
 gi|76558494|emb|CAI50086.1| DNA primase small subunit [Natronomonas pharaonis DSM 2160]
          Length = 393

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 13/93 (13%)

Query: 99  KMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACK-----ILDTALREDFDFQLLL 153
           +  +LVFD+D        +   G D  E  +  M  ACK     +LD  L EDF F+ L 
Sbjct: 93  RGSDLVFDLDA-------DHLPGIDPSETSYAAMLEACKGALSRLLDL-LVEDFGFEPLA 144

Query: 154 WVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
            VFSG RG H  V  +  L LD   R  + EY+
Sbjct: 145 VVFSGGRGYHVHVRRDDVLELDRTARREIVEYV 177


>gi|110668621|ref|YP_658432.1| DNA primase small subunit [Haloquadratum walsbyi DSM 16790]
 gi|121687206|sp|Q18GR9.1|PRIS_HALWD RecName: Full=Probable DNA primase small subunit
 gi|109626368|emb|CAJ52827.1| DNA primase small subunit [Haloquadratum walsbyi DSM 16790]
          Length = 385

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 99  KMKELVFDIDMTDYDDVR-NCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFS 157
           +  +L+FD+D      V  +  S AD+   C   +    + +D    +DF+F     VFS
Sbjct: 90  QSADLIFDLDADHLPGVNPDTTSYADMLTACKTELQTLLEFID----DDFNFDETQVVFS 145

Query: 158 GRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTAN 192
           G RG H  V DE   +LD   R  + +Y+  +  N
Sbjct: 146 GGRGYHVHVRDEQVRSLDSAARREIVDYIRAIDLN 180


>gi|448739289|ref|ZP_21721304.1| DNA primase small subunit [Halococcus thailandensis JCM 13552]
 gi|445799884|gb|EMA50253.1| DNA primase small subunit [Halococcus thailandensis JCM 13552]
          Length = 392

 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 32/180 (17%)

Query: 27  YLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDIC 86
           YLR  F    D++R+ E   TL  D  AR   +          + R    +DLG++ D  
Sbjct: 8   YLRGRFR---DHYRRTEP--TLPPDADAREWGHIPWTAGPGTTMVRHNSTLDLGSLPDFL 62

Query: 87  PKDHLQHSVFTP----------------KMKELVFDIDMTDYDDVRNCCSGAD----ICE 126
            ++  +H  F+                 +  +LVFD+D    D + +   GAD    + E
Sbjct: 63  ARERPRHVYFSAGRYDDPGASSMAEKGWRGSDLVFDLDA---DHLPSVELGADSYKEMLE 119

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KC    +   ++LD  L  DF F+ L  VFSG RG H  V D     L+   R  + +Y+
Sbjct: 120 KC---KAALLRLLDF-LENDFGFRDLTIVFSGGRGYHVHVRDAGVQPLESDARREIVDYV 175


>gi|409729474|ref|ZP_11271515.1| DNA primase small subunit [Halococcus hamelinensis 100A6]
 gi|448723427|ref|ZP_21705945.1| DNA primase small subunit [Halococcus hamelinensis 100A6]
 gi|445787693|gb|EMA38432.1| DNA primase small subunit [Halococcus hamelinensis 100A6]
          Length = 393

 Score = 44.7 bits (104), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 72/177 (40%), Gaps = 26/177 (14%)

Query: 27  YLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDIC 86
           YLR  F    D++R+ E     + D  AR   Y          + R    +DLG +    
Sbjct: 8   YLRGRFR---DHYRRTEPVLPPDAD--AREWGYIPWTSGPGTTMVRHRSTLDLGDLGAFL 62

Query: 87  PKDHLQHSVFTP---------KMKE-------LVFDIDMTDYDDVR-NCCSGADICEKCW 129
            ++  +H  F+           M E       LVFD+D      V     S  ++ EKC 
Sbjct: 63  ARERPRHVYFSAGRYDDPAAGSMSEKGWVGSDLVFDLDADHLPAVELGVDSYGEMLEKC- 121

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
              +   ++LD  L  DF FQ L  VFSG RG H  V D A  AL+   R  + +Y+
Sbjct: 122 --KAALLRLLDF-LENDFGFQDLTVVFSGGRGYHVHVRDSAVQALESDARREVVDYV 175


>gi|118431046|ref|NP_147231.2| DNA primase small subunit [Aeropyrum pernix K1]
 gi|150421633|sp|Q9YEZ8.2|PRIS_AERPE RecName: Full=Probable DNA primase small subunit
 gi|116062372|dbj|BAA79398.2| DNA primase small subunit [Aeropyrum pernix K1]
          Length = 342

 Score = 44.3 bits (103), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 26/133 (19%)

Query: 42  REFSFTL-NGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKM 100
           REF+F L +GD+Y R+I ++S  EL   + +  P+     A Y +      ++S+ T + 
Sbjct: 33  REFAFQLFDGDVYVRHIGFDSMEELLSYMAREAPKN----AYYSVA-----RYSLPTARS 83

Query: 101 --------KELVFDIDMTDYDDVRNCCSGADICEKCW-RYMSIACKILDTALREDFDFQL 151
                    EL+FDID+   D +  C  G  + + C  R    A ++++ AL  DF    
Sbjct: 84  MEEKGWLGSELMFDIDV---DSLEGC--GEVLGDSCLSRGYKQAVRLVE-ALYRDFGVPS 137

Query: 152 LLWVFSGRRGIHC 164
            L+ F+G RG H 
Sbjct: 138 TLY-FTGNRGFHV 149


>gi|350525963|ref|YP_004885476.1| DNA primase small subunit [Thermococcus sp. AM4]
 gi|345650782|gb|AEO14038.1| DNA primase small subunit [Thermococcus sp. AM4]
          Length = 342

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 102 ELVFDIDMTDYDDVRNCCS---GADICEKCWRYMSIACKILDT--ALREDFDFQLLLWVF 156
           ELVFDID  D   +R C        +C  C         +LDT   L+EDF F+ +  V+
Sbjct: 93  ELVFDIDAKDLP-LRRCIELHPSGQVCPLCLE--DAKELVLDTLRILKEDFGFEEIHVVY 149

Query: 157 SGRRGIHCWVCDEAALALDGRGRSCLAEYMSV 188
           SGR G H  V D+  L LD + R  +  Y+S 
Sbjct: 150 SGR-GYHIRVLDDWVLDLDAKAREKILAYVSA 180


>gi|14520400|ref|NP_125875.1| DNA primase small subunit [Pyrococcus abyssi GE5]
 gi|13878646|sp|Q9V292.1|PRIS_PYRAB RecName: Full=DNA primase small subunit; AltName: Full=DNA primase
           41 kDa subunit; Short=p41
 gi|5457615|emb|CAB49106.1| DNA primase [Pyrococcus abyssi GE5]
 gi|380740924|tpe|CCE69558.1| TPA: DNA primase small subunit [Pyrococcus abyssi GE5]
          Length = 345

 Score = 44.3 bits (103), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 7/154 (4%)

Query: 36  LDNFRKREFSFTLNGDIYA-RYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHS 94
           L N  KREF F   G+  + R  SY    +L+  +    P      A+Y           
Sbjct: 29  LQNLDKREFGFDHTGEGPSDRKNSYTDVRDLEDYIKATAPY-----AVYSSVAFYEKPQE 83

Query: 95  VFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLW 154
           +      ELVFDID  D    R       +C  C        +     L+E+  F+ +  
Sbjct: 84  MEGWLGAELVFDIDAKDLPLRRCNHEPGKVCPICLNDAKEIARDTLIVLKEELGFEDVHV 143

Query: 155 VFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSV 188
           V+SGR G H  V D  AL+LD + R  +  ++S 
Sbjct: 144 VYSGR-GYHIRVMDGWALSLDSKSRERILSFISA 176


>gi|240102400|ref|YP_002958709.1| DNA primase small subunit [Thermococcus gammatolerans EJ3]
 gi|239909954|gb|ACS32845.1| DNA primase small subunit (priA) [Thermococcus gammatolerans EJ3]
          Length = 341

 Score = 43.9 bits (102), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 102 ELVFDIDMTDYDDVRNCCS---GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSG 158
           ELVFDID  D   +R C        +C  C            T L+EDF F+ +  V+SG
Sbjct: 92  ELVFDIDAKDLP-LRRCMDLHPSGQVCPLCLEDAKELVLDTLTILKEDFGFEEIHVVYSG 150

Query: 159 RRGIHCWVCDEAALALDGRGRSCLAEYMSV 188
           R G H  V D+  L LD + R  +  Y+S 
Sbjct: 151 R-GYHIRVLDDWVLDLDSKAREKILAYVSA 179


>gi|116753734|ref|YP_842852.1| DNA primase small subunit [Methanosaeta thermophila PT]
 gi|121692799|sp|A0B688.1|PRIS_METTP RecName: Full=Probable DNA primase small subunit
 gi|116665185|gb|ABK14212.1| DNA primase small subunit [Methanosaeta thermophila PT]
          Length = 395

 Score = 43.9 bits (102), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 20/160 (12%)

Query: 55  RYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKE-------LVFDI 107
           R+ S+ S  EL   +    P  +   A Y + P          P MKE       L+FD+
Sbjct: 45  RHRSFRSRKELVDYIRSTVPAHVYHSAAYYLKPD--------APTMKEKIWKGADLIFDL 96

Query: 108 DMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALRE-DFDFQLLLWVFSGRRGIHCWV 166
           D     + R      D  E   R      K+L+  L +  FD +++   FSG RG H  V
Sbjct: 97  DADHLAEYRGSGI-RDFREMLERVKGETMKLLEFLLSDFGFDERMISVAFSGGRGYHIHV 155

Query: 167 CDEAALALDGRGRSCLAEYMSVLTANP---VKKVFLTGDV 203
            D++ L L    R  + +Y++    +P   + K+ + GD 
Sbjct: 156 RDKSVLKLRSDARREIVDYLTGRGLDPERFIHKIGVDGDA 195


>gi|320100254|ref|YP_004175846.1| DNA primase small subunit [Desulfurococcus mucosus DSM 2162]
 gi|319752606|gb|ADV64364.1| DNA primase small subunit [Desulfurococcus mucosus DSM 2162]
          Length = 375

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 67/170 (39%), Gaps = 39/170 (22%)

Query: 101 KELVFDIDMTDY---DDVRNCCSGADICEK----------------CW----RYMSIACK 137
            EL+FDID   Y     V   C G  + +                  W    R    A +
Sbjct: 94  SELIFDIDADKYPGCSQVFKICIGGGVVDGEAGCPGGREPVEYPVVPWDCIRRAWESALR 153

Query: 138 ILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKV 197
           + D  LR D  F  +   FSG RG H  V DE+AL L    R  LA+Y++    +  +  
Sbjct: 154 LRDILLR-DLGFSRIKIYFSGNRGFHVRVLDESALPLTREQRRLLADYVACSNLDTAR-- 210

Query: 198 FLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDI 247
                 + P   R K++   +FE  L  + L S + R     GLV  G+I
Sbjct: 211 ------MFPSY-RGKVVFH-RFEHGLRRRVLESARAR-----GLVREGEI 247


>gi|296241790|ref|YP_003649277.1| DNA primase small subunit [Thermosphaera aggregans DSM 11486]
 gi|296094374|gb|ADG90325.1| DNA primase small subunit [Thermosphaera aggregans DSM 11486]
          Length = 370

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 46/114 (40%), Gaps = 32/114 (28%)

Query: 102 ELVFDIDMTDYDDVRNCCSGADICEK------------------------CW----RYMS 133
           EL+FDID   Y   + C     IC K                         W    R + 
Sbjct: 84  ELIFDIDADKY---QGCSESYYICVKDNQVFNAKPDSCESGGKPLEIPLVSWNCIKRALQ 140

Query: 134 IACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMS 187
            A K+ D  L  D  F+ +   FSG RG H  + DEA LAL+   R  +A+Y+S
Sbjct: 141 DAVKLRDI-LMTDLGFKDVKIFFSGNRGFHVRISDEAVLALNSEERRLIADYVS 193


>gi|409096673|ref|ZP_11216697.1| DNA primase small subunit [Thermococcus zilligii AN1]
          Length = 350

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 102 ELVFDIDMTDYDDVRNCCS---GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSG 158
           ELVFDID  D   +R C        +C  C        K     L+EDF  + +  V+SG
Sbjct: 93  ELVFDIDAKDLP-LRRCLQVHPSGQVCPVCLEDAKELAKDTLVILKEDFGLEEVHVVYSG 151

Query: 159 RRGIHCWVCDEAALALDGRGRSCLAEYMSV 188
           R G H  + D+ A+ LD + R  +  Y+S 
Sbjct: 152 R-GYHIRILDDWAMNLDHKAREKILAYVSA 180


>gi|212224928|ref|YP_002308164.1| DNA primase small subunit [Thermococcus onnurineus NA1]
 gi|226705025|sp|B6YV39.1|PRIS_THEON RecName: Full=Probable DNA primase small subunit
 gi|212009885|gb|ACJ17267.1| eukaryotic-type DNA primase, small subunit [Thermococcus onnurineus
           NA1]
          Length = 346

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 102 ELVFDIDMTDYDDVRNCC---SGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSG 158
           ELVFDID  D   +R C        +C  C        +     L+EDF F+ +  V+SG
Sbjct: 93  ELVFDIDAKDLP-LRRCGHIHEHGKVCPICLGDAKELARDTLVILKEDFGFEDVHVVYSG 151

Query: 159 RRGIHCWVCDEAALALDGRGRSCLAEYMSV 188
           R G H  V D+ A+ LD + R  +  Y+S 
Sbjct: 152 R-GYHIRVLDDWAIQLDSKSREKILAYISA 180


>gi|390937794|ref|YP_006401532.1| DNA primase, small subunit [Desulfurococcus fermentans DSM 16532]
 gi|390190901|gb|AFL65957.1| DNA primase, small subunit [Desulfurococcus fermentans DSM 16532]
          Length = 375

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 48/110 (43%), Gaps = 25/110 (22%)

Query: 102 ELVFDIDMTDY-----------------DDVRNCCSGADICE---KCWRYM----SIACK 137
           EL+FDID   Y                 +D  +C SG +  E     W  +    S A K
Sbjct: 94  ELIFDIDADKYPGCMQRYLVCSKSGVIINDGESCPSGEEPLEYSPVSWECILEAWSDALK 153

Query: 138 ILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMS 187
           + D  L +DF F  +   FSG RG H  V DE AL L    R  +A+Y++
Sbjct: 154 LRDI-LVQDFGFSKVKIYFSGNRGFHVRVLDEEALPLTREQRRLIADYVA 202


>gi|448735005|ref|ZP_21717224.1| DNA primase small subunit [Halococcus salifodinae DSM 8989]
 gi|445799059|gb|EMA49441.1| DNA primase small subunit [Halococcus salifodinae DSM 8989]
          Length = 392

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 73/181 (40%), Gaps = 34/181 (18%)

Query: 27  YLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDIC 86
           YLR  F    D++R+ E +   + D  AR   Y          + R    +DLG   D  
Sbjct: 8   YLRGRFR---DHYRRTEPTPPPDAD--AREWGYIPWTSSPGTTMVRHKSTLDLGDFGDFL 62

Query: 87  PKDHLQHSVFTP----------------KMKELVFDIDMTDYDDVRNCCSGADICEKCWR 130
            ++  +H  F+                 +  +LVFD+D        +     ++ E  + 
Sbjct: 63  ARERPRHIYFSAGRYDEPAAGSMDEKDWQGSDLVFDLDA-------DHLPSVELGEDSYA 115

Query: 131 YMSIACK-----ILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
            M   CK     +LD  L +DFDF+ L  VFSG RG H  V D+    L+   R  + +Y
Sbjct: 116 EMLGKCKDALLRLLDF-LEDDFDFRELDIVFSGGRGYHVHVRDDGVQDLERDARREIVDY 174

Query: 186 M 186
           +
Sbjct: 175 V 175


>gi|435850616|ref|YP_007312202.1| DNA primase, eukaryotic-type, small subunit, putative
           [Methanomethylovorans hollandica DSM 15978]
 gi|433661246|gb|AGB48672.1| DNA primase, eukaryotic-type, small subunit, putative
           [Methanomethylovorans hollandica DSM 15978]
          Length = 388

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 23/143 (16%)

Query: 55  RYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKE-------LVFDI 107
           R+I++ S  E+K  L    P        Y   P          PKMKE       L+FDI
Sbjct: 48  RHIAFGSEGEIKDYLKGISPAHAYYSVAYYEYPS--------APKMKEKNWQKADLIFDI 99

Query: 108 DMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQL--LLWVFSGRRGIHCW 165
           D        N  S A++ EK  +      K+++  L +DF F+   +  VFSG RG HC 
Sbjct: 100 DSDHLPGKIN--SYAEMLEKGKKE---TFKLMEFLL-DDFGFEEKDVHIVFSGGRGYHCH 153

Query: 166 VCDEAALALDGRGRSCLAEYMSV 188
           + D + L L+   R  + +Y+S 
Sbjct: 154 ITDPSVLHLESPERREIVDYVSA 176


>gi|448298681|ref|ZP_21488709.1| DNA primase small subunit [Natronorubrum tibetense GA33]
 gi|445591351|gb|ELY45557.1| DNA primase small subunit [Natronorubrum tibetense GA33]
          Length = 391

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 12/136 (8%)

Query: 55  RYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDD 114
           R+ S     +L + L+++ PQ +   A     P     H+    +  +LVFD+D      
Sbjct: 48  RHRSLLELGDLSEFLVRKRPQHVYFSAGRFRDPGASSMHAK-DWQSADLVFDLDA----- 101

Query: 115 VRNCCSGADICEKCWRYMSIACK----ILDTALREDFDFQLLLWVFSGRRGIHCWVCDEA 170
             +      + E  +  M   CK     L   L +DF F+ L +VFSG RG H  V DE 
Sbjct: 102 --DHLPSVTLGEDSYAEMLAKCKDALFRLIEFLEDDFGFEELEFVFSGGRGYHVHVRDEN 159

Query: 171 ALALDGRGRSCLAEYM 186
            L LD   R  + +Y+
Sbjct: 160 VLHLDREHRREIVDYV 175


>gi|448306214|ref|ZP_21496123.1| DNA primase small subunit [Natronorubrum bangense JCM 10635]
 gi|445598628|gb|ELY52683.1| DNA primase small subunit [Natronorubrum bangense JCM 10635]
          Length = 391

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 6/133 (4%)

Query: 55  RYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDD 114
           R+ S     +L + L+++ PQ I   A     P     H     +  +LVFD+D    D 
Sbjct: 48  RHRSLLELGDLSEFLVRKRPQHIYFSAGRFRDPGASSMHEK-DWQSADLVFDLDA---DH 103

Query: 115 VRNCCSGAD-ICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALA 173
           + +   G D   E   +     C++L+  L EDF F+ L  VFSG RG H  V DE  L 
Sbjct: 104 LPSVTLGEDSYGEMLAKCKDALCRLLEF-LEEDFGFEDLEIVFSGGRGYHVHVRDENVLH 162

Query: 174 LDGRGRSCLAEYM 186
           L+   R  + +Y+
Sbjct: 163 LEREHRREIVDYV 175


>gi|402576065|gb|EJW70025.1| hypothetical protein WUBG_19068 [Wuchereria bancrofti]
          Length = 71

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 42  REFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYD---ICPKDHLQHSVFTP 98
           RE +F    D +ARY S+    + +++L K  PQKID+GA+Y+     P+ + +   F P
Sbjct: 2   RELAFVFEDDRHARYRSFEDSADFERELCKANPQKIDIGAVYNYKQTLPEYYRRLFPFEP 61

Query: 99  KMKELVF 105
             K L +
Sbjct: 62  LCKWLAY 68


>gi|297851480|ref|XP_002893621.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297339463|gb|EFH69880.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 93

 Score = 42.4 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 192 NPVKKVFLTGDVLHPHLKRAKL-IIEDQFE-KLLEEQELLSTKERQTKVLGLVSNGDIRA 249
           N  K V L G    P L R+ +  +++ FE +L   Q + S+KE+  K+LG++++ DI++
Sbjct: 19  NSAKNVDLMGHSHQPFLARSCVDFLKNFFEDELHATQSIFSSKEKYEKILGMITDEDIQS 78

Query: 250 EIEKEW 255
           E+  EW
Sbjct: 79  ELRGEW 84


>gi|222480210|ref|YP_002566447.1| DNA primase small subunit [Halorubrum lacusprofundi ATCC 49239]
 gi|254782820|sp|B9LPT9.1|PRIS_HALLT RecName: Full=Probable DNA primase small subunit
 gi|222453112|gb|ACM57377.1| DNA primase, small subunit [Halorubrum lacusprofundi ATCC 49239]
          Length = 387

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 13/96 (13%)

Query: 99  KMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACK-----ILDTALREDFDFQLLL 153
           +  +LVFD+D        +   G D     +  M   CK     +LD  L +DF F  L 
Sbjct: 91  RSADLVFDLDA-------DHLPGVDPDATSYPEMLAECKQALLRLLDF-LEDDFSFDDLT 142

Query: 154 WVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
            VFSG RG H  V DE+   LD   R  + +Y+  +
Sbjct: 143 VVFSGGRGYHVHVRDESVRELDSEARREVVDYVRAI 178


>gi|448452299|ref|ZP_21593260.1| DNA primase small subunit [Halorubrum litoreum JCM 13561]
 gi|448508348|ref|ZP_21615454.1| DNA primase small subunit [Halorubrum distributum JCM 9100]
 gi|448518277|ref|ZP_21617389.1| DNA primase small subunit [Halorubrum distributum JCM 10118]
 gi|445697414|gb|ELZ49478.1| DNA primase small subunit [Halorubrum distributum JCM 9100]
 gi|445705389|gb|ELZ57287.1| DNA primase small subunit [Halorubrum distributum JCM 10118]
 gi|445809363|gb|EMA59407.1| DNA primase small subunit [Halorubrum litoreum JCM 13561]
          Length = 387

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 15/97 (15%)

Query: 99  KMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALR------EDFDFQLL 152
           +  +LVFD+D        +   G D     +  M  ACK  D  LR      +DF F+ +
Sbjct: 91  RNADLVFDLDA-------DHLPGVDPETTSYPEMLAACK--DALLRLLDFIDDDFAFEDV 141

Query: 153 LWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
             VFSG RG H  V DE+   LD   R  + +Y+  +
Sbjct: 142 TVVFSGGRGYHVHVRDESVRELDSDARREIVDYVRAI 178


>gi|448426298|ref|ZP_21583244.1| DNA primase small subunit [Halorubrum terrestre JCM 10247]
 gi|448484614|ref|ZP_21606162.1| DNA primase small subunit [Halorubrum arcis JCM 13916]
 gi|445679789|gb|ELZ32249.1| DNA primase small subunit [Halorubrum terrestre JCM 10247]
 gi|445819822|gb|EMA69657.1| DNA primase small subunit [Halorubrum arcis JCM 13916]
          Length = 387

 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 15/97 (15%)

Query: 99  KMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALR------EDFDFQLL 152
           +  +LVFD+D        +   G D     +  M  ACK  D  LR      +DF F+ +
Sbjct: 91  RNADLVFDLDA-------DHLPGVDPETTSYPEMLAACK--DALLRLLDFIDDDFAFEDV 141

Query: 153 LWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
             VFSG RG H  V DE+   LD   R  + +Y+  +
Sbjct: 142 TVVFSGGRGYHVHVRDESVRELDSDARREIVDYVRAI 178


>gi|15897915|ref|NP_342520.1| DNA primase small subunit [Sulfolobus solfataricus P2]
 gi|284173563|ref|ZP_06387532.1| DNA primase small subunit [Sulfolobus solfataricus 98/2]
 gi|384434470|ref|YP_005643828.1| DNA primase small subunit [Sulfolobus solfataricus 98/2]
 gi|34395819|sp|Q97Z83.1|PRIS_SULSO RecName: Full=Probable DNA primase small subunit
 gi|83753852|pdb|1ZT2|A Chain A, Heterodimeric Structure Of The Core Primase.
 gi|83753853|pdb|1ZT2|C Chain C, Heterodimeric Structure Of The Core Primase.
 gi|13814232|gb|AAK41310.1| DNA primase, putative [Sulfolobus solfataricus P2]
 gi|261602624|gb|ACX92227.1| DNA primase small subunit [Sulfolobus solfataricus 98/2]
          Length = 330

 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 29/171 (16%)

Query: 42  REFSFT-LNGDIYARYISYNSPNELKKDLIKR-CPQKIDL-GAIYDICPKDHLQHSVFTP 98
           REF+      D Y R++S++S  EL+  L+ R  P  +    A Y +    +++   +  
Sbjct: 36  REFALQPFGSDTYVRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPSARNMEEKAWMG 95

Query: 99  KMKELVFDID---MTDYDDVRNC--CSGADICEKCWR-------YMSIACKILDTALRE- 145
              +L+FDID   +     +R C  C  A + EKC R       Y+ +  + +   L + 
Sbjct: 96  --SDLLFDIDADHLCKLRSIRFCPVCGNAVVSEKCERDNVETLEYVEMTSECIKRGLEQT 153

Query: 146 ---------DFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYM 186
                    DF  +  ++ FSG RG H  V C      LD   R  +AEY+
Sbjct: 154 RNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGNCALLDSDERKEIAEYV 203


>gi|218884731|ref|YP_002429113.1| putative DNA primase small subunit [Desulfurococcus kamchatkensis
           1221n]
 gi|218766347|gb|ACL11746.1| Probable DNA primase small subunit [Desulfurococcus kamchatkensis
           1221n]
          Length = 374

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 31/113 (27%)

Query: 102 ELVFDIDMTDY-----------------DDVRNCCSGADICEKCWRYMSIA----CKILD 140
           EL+FDID   Y                 +D  +C SG    E+  +Y  ++     K  D
Sbjct: 93  ELIFDIDADKYPGCIQRYLVCSKSGVIINDGESCPSG----EEPLKYSPVSWECILKAWD 148

Query: 141 TALR------EDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMS 187
            AL+      +DF F  +   FSG RG H  V DE AL L    R  +A+Y++
Sbjct: 149 DALKLRDILVQDFGFSKVKIYFSGNRGFHVRVMDEEALPLTREQRRLIADYVA 201


>gi|448727360|ref|ZP_21709726.1| DNA primase small subunit [Halococcus morrhuae DSM 1307]
 gi|445791574|gb|EMA42214.1| DNA primase small subunit [Halococcus morrhuae DSM 1307]
          Length = 392

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 73/181 (40%), Gaps = 34/181 (18%)

Query: 27  YLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDIC 86
           YLR  F    D++R+ E   TL  D  AR   +          + R    +DLG++ D  
Sbjct: 8   YLRGRFR---DHYRRTEP--TLPPDADAREWGHIPWTAGPGTTMVRHNSTLDLGSLPDFL 62

Query: 87  PKDHLQHSVFTP----------------KMKELVFDIDMTDYDDVRNCCSGADICEKCWR 130
            ++  +H  F+                 +  +LVFD+D    D + +   G D     ++
Sbjct: 63  ARERPRHVYFSAGRYDDPGASSMAEKDWRGSDLVFDLDA---DHLPSVELGVD----SYK 115

Query: 131 YMSIACK-----ILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
            M   CK     +LD  L  DF F  L  VFSG RG H  V D     L+   R  + +Y
Sbjct: 116 QMLAKCKTALLRLLDF-LENDFGFHDLTIVFSGGRGYHVHVRDAGVQPLESDARREIVDY 174

Query: 186 M 186
           +
Sbjct: 175 V 175


>gi|345005077|ref|YP_004807930.1| DNA primase small subunit [halophilic archaeon DL31]
 gi|344320703|gb|AEN05557.1| DNA primase small subunit [halophilic archaeon DL31]
          Length = 391

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 95/241 (39%), Gaps = 32/241 (13%)

Query: 102 ELVFDIDMTDYDDV-RNCCSGADICEKCWRYMSIACKILDTALREDFDFQ--LLLWVFSG 158
           +LVFD+D      +     S A++ E C      A K L T L EDF F    LL VFSG
Sbjct: 98  DLVFDLDADHLPAIDAEAASYAEMLEAC----KDALKRLLTLLMEDFGFTEDQLLVVFSG 153

Query: 159 RRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQ 218
            RG H  + + A L LD   R  + +Y+  +    + +  L   V H    R +L  E  
Sbjct: 154 GRGYHVHIREAALLELDSDARREVVDYVRAVE---LDRDDLVRTVRHGSTTRRELKTEGG 210

Query: 219 FEK--------LLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRL 270
           + +         +E+   +   +  + ++ L   G+ RA       R  P          
Sbjct: 211 WGRRVHRRLVEFVEDLREMDDDDAMSTLMDLDGIGEGRATTILGAVRNNPDA-------- 262

Query: 271 VAIIKHHQAKNSDRKLKYAIEEILLELAYPR---LDIHVSKGVNHLLKSPFCVHPKTGKI 327
              I+    +     ++  +E +  E+   +   +D  V+  V  L++ P  +H  TG +
Sbjct: 263 ---IREGNVEAGGPGIRRLVEALTAEVTATQTAPIDEPVTTDVRRLIRLPGTLHGGTGFV 319

Query: 328 C 328
            
Sbjct: 320 V 320


>gi|70607044|ref|YP_255914.1| DNA primase small subunit [Sulfolobus acidocaldarius DSM 639]
 gi|449067279|ref|YP_007434361.1| DNA primase small subunit [Sulfolobus acidocaldarius N8]
 gi|449069550|ref|YP_007436631.1| DNA primase small subunit [Sulfolobus acidocaldarius Ron12/I]
 gi|76363298|sp|Q4J9B0.1|PRIS_SULAC RecName: Full=Probable DNA primase small subunit
 gi|68567692|gb|AAY80621.1| DNA primase small subunit [Sulfolobus acidocaldarius DSM 639]
 gi|449035787|gb|AGE71213.1| DNA primase small subunit [Sulfolobus acidocaldarius N8]
 gi|449038058|gb|AGE73483.1| DNA primase small subunit [Sulfolobus acidocaldarius Ron12/I]
          Length = 322

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 21/170 (12%)

Query: 42  REFSFT-LNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAI-YDICPKDHLQHSVFTPK 99
           REF++   N D Y R+++++S +EL+  ++   P  +   A  Y I     ++   +   
Sbjct: 36  REFAYQPFNSDTYVRHLTFSSVDELRSFILSNVPLHLYFSAARYQIPSAKEMEQKGWLGS 95

Query: 100 MKELVFDIDMTDYDDVRNCCSGADI----CEKCWRYMS---IAC--KILDTALR------ 144
                 D D     +VR  CSG +I    C+   R +S   + C  ++ + AL       
Sbjct: 96  DLLFDLDADDICEINVRRFCSGMEILSETCDGEVREISEITVDCINRVFENALVLKDILI 155

Query: 145 EDFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYMSVLTANP 193
           +DF  +  ++ FSG RG H  V C      LD   R  +AEY  +++ +P
Sbjct: 156 QDFGLKPRIF-FSGNRGFHIRVDCYNEWANLDSEDRREIAEY--IMSPSP 202


>gi|410670435|ref|YP_006922806.1| DNA primase small subunit [Methanolobus psychrophilus R15]
 gi|409169563|gb|AFV23438.1| DNA primase small subunit [Methanolobus psychrophilus R15]
          Length = 391

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 30/195 (15%)

Query: 39  FRKREFSFTLNG---DIYA-RYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHS 94
           F  RE+ F   G   D++  R+  + S  EL   L    P        Y   P       
Sbjct: 28  FTSREWGFLEFGSADDVFMKRHRDFGSKGELYDYLRGMAPAHAYYSVAYYEYPG------ 81

Query: 95  VFTPKMKE-------LVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALRE-D 146
              PKMKE       L+FDID        N  S  D+ EK  +      K+LD  + +  
Sbjct: 82  --APKMKEKNWLKADLIFDIDSDHLPGKIN--SYGDMLEKGKKE---TLKLLDFLITDFG 134

Query: 147 FDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLT----GD 202
           FD   +  VFSG RG H  + D + L+L+   R  + +Y+S    + ++++F T    GD
Sbjct: 135 FDESAVHAVFSGGRGYHFHISDPSVLSLESPERREIVDYVSSKGLD-LERIFTTKEISGD 193

Query: 203 VLHPHLKRAKLIIED 217
                 K +  + ED
Sbjct: 194 AGTESAKMSMFVAED 208


>gi|448667282|ref|ZP_21685824.1| DNA primase small subunit [Haloarcula amylolytica JCM 13557]
 gi|445770317|gb|EMA21381.1| DNA primase small subunit [Haloarcula amylolytica JCM 13557]
          Length = 392

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 27/130 (20%)

Query: 77  IDLGAIYDICPKDHLQHSVFTP----------------KMKELVFDIDMTDYDDVRNCCS 120
           +DLG I D   +   +H  F+                 +  +LVFD+D    D + +   
Sbjct: 53  LDLGEIEDFLGRRKPRHVYFSAGRYDEPSASTMSDKGWRSSDLVFDLDA---DHLPSVVL 109

Query: 121 G----ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDG 176
           G    A++ EKC   +    ++LD  L +DF F+ L  VFSG RG H  V DE    L+ 
Sbjct: 110 GEDTYAEMLEKCKDAL---LRLLDF-LEDDFGFEDLTVVFSGGRGYHVHVRDERIRGLER 165

Query: 177 RGRSCLAEYM 186
             R  + +Y+
Sbjct: 166 DARREIVDYV 175


>gi|288932148|ref|YP_003436208.1| DNA primase, small subunit [Ferroglobus placidus DSM 10642]
 gi|288894396|gb|ADC65933.1| DNA primase, small subunit [Ferroglobus placidus DSM 10642]
          Length = 355

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 123/304 (40%), Gaps = 62/304 (20%)

Query: 41  KREFSF----TLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVF 96
           +RE++F     L   I  R+I+++S  ELK  ++   P  +   + Y   P D       
Sbjct: 30  EREWAFVEVEALPEFIMRRHIAFDSYVELKGFILNNVPLHVYYSSAYYEKP-DAENMEAK 88

Query: 97  TPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVF 156
             K  +L+FDID    D + N            +      K+L   L EDF  + +  VF
Sbjct: 89  GWKKADLIFDIDA---DHLPNGS---------LKEAKRQIKMLYDVLEEDFGCKDMEIVF 136

Query: 157 SGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIE 216
           SG RG H  V DE  L L    R  + +Y+           FLT               +
Sbjct: 137 SGSRGYHLHVHDEDFLELSSAERREIVDYL-----------FLT---------------D 170

Query: 217 DQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLV----- 271
            +F + L E        +Q+  +  +  G+I   ++K   R    +  EK ++++     
Sbjct: 171 FKFSRKLPES-------KQSYRIAGIMAGEIEEALKKGKIRELFPKISEKREKMLLAAAE 223

Query: 272 AIIKHHQAKNSDRKLKYAIEEI--LLELAYPRLDIH----VSKGVNHLLKSPFCVHPKTG 325
            +++  +  N D   K   +E+  L   A  R+ IH    V+  V  L++ P  +H KTG
Sbjct: 224 EVVEKVKNLNFDHFPKTLDKELARLFNKAAERVRIHVDPPVTADVKRLIRLPGSLHGKTG 283

Query: 326 -KIC 328
            K+C
Sbjct: 284 LKVC 287


>gi|313125916|ref|YP_004036186.1| DNA primase small subunit [Halogeometricum borinquense DSM 11551]
 gi|448285757|ref|ZP_21476996.1| DNA primase small subunit [Halogeometricum borinquense DSM 11551]
 gi|312292281|gb|ADQ66741.1| DNA primase small subunit [Halogeometricum borinquense DSM 11551]
 gi|445575787|gb|ELY30250.1| DNA primase small subunit [Halogeometricum borinquense DSM 11551]
          Length = 385

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 27/133 (20%)

Query: 77  IDLGAIYDICPKDHLQHSVFTP----------------KMKELVFDIDMTDYDDVRNCCS 120
           +D+G + D   +   QH  F+                 +  +LVFD+D        +   
Sbjct: 52  LDIGNLGDFLTRTAPQHVYFSAARFNDPGAGTMDEKGWQSADLVFDLDA-------DHLP 104

Query: 121 GADICEKCWRYMSIACKILDTAL----REDFDFQLLLWVFSGRRGIHCWVCDEAALALDG 176
           G D     +  M  ACK    +L      DFDF     VFSG RG H  V DE    LD 
Sbjct: 105 GVDPETTSYADMLAACKDDLLSLLDILENDFDFTDTQVVFSGGRGYHVHVRDENVRELDS 164

Query: 177 RGRSCLAEYMSVL 189
             R  + +Y+  +
Sbjct: 165 DARREIVDYVRAI 177


>gi|330834304|ref|YP_004409032.1| DNA primase small subunit [Metallosphaera cuprina Ar-4]
 gi|329566443|gb|AEB94548.1| DNA primase small subunit [Metallosphaera cuprina Ar-4]
          Length = 308

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 28/171 (16%)

Query: 42  REFSFT-LNGDIYARYISYNSPNELKKDLIKRCPQKIDL-GAIYDICPKDHLQHSVFTPK 99
           REF++  ++   Y R++S++S  EL++ L++  P  +    A Y       ++   +   
Sbjct: 21  REFAYQPMDSGSYVRHLSFSSLQELRQALVQDVPAHLFYSSAKYQRPTARDMEEKGWMG- 79

Query: 100 MKELVFDIDMTDYDDVRN-----CCSGADICEKCWRY---------MSIAC--------K 137
             +L FD+D     + R       C    I  KC  +         +S+ C         
Sbjct: 80  -SDLQFDLDADHLCETRKIVFCPVCGKEVIGGKCQEHGVDAREYVEISVDCLKRTWELAN 138

Query: 138 ILDTALREDFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYMS 187
           +L   LREDFD +  ++ FSG RG H  V C      +D   R  +  Y+S
Sbjct: 139 VLAEILREDFDLKPRIF-FSGNRGFHVLVECSGECALMDSEDRKEIVRYVS 188


>gi|3342819|gb|AAC27713.1| primase small subunit homolog [thermophilic archaeon
           'Bonch-Osmolovskaya']
          Length = 357

 Score = 41.2 bits (95), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 102 ELVFDIDMTDYDDVRNCC---SGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSG 158
           ELVFDID  D   +R C        +C  C        +     L+EDF F+ +  ++SG
Sbjct: 93  ELVFDIDAKDLP-LRRCQHIHEHGKVCPICLEDAKELARDTLIVLKEDFGFESVHVIYSG 151

Query: 159 RRGIHCWVCDEAALALDGRGRSCLAEYMSV 188
           R G H  V D+     DG+ R  +  Y+S 
Sbjct: 152 R-GYHIRVLDDWRWPSDGKAREKILAYVSA 180


>gi|284162895|ref|YP_003401518.1| DNA primase, small subunit [Archaeoglobus profundus DSM 5631]
 gi|284012892|gb|ADB58845.1| DNA primase, small subunit [Archaeoglobus profundus DSM 5631]
          Length = 332

 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 40/167 (23%)

Query: 38  NFRKREFSFT----LNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQH 93
           NF  RE++F         I  R+IS+++P EL+  ++   P      + Y + P   +  
Sbjct: 18  NFDMREWAFVPLKNFPDFIMVRHISFSNPEELRDFILSNIPAHAYFSSAYYLKPSADMDE 77

Query: 94  SVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLL 153
             +  +  +L+FDID                      Y  +  K LD+A RE F    +L
Sbjct: 78  KEW--RGADLIFDID----------------------YDHLPTKSLDSAKREVFKLVKIL 113

Query: 154 ------------WVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSV 188
                         FSG RG H  V DE    L    R  + +Y+++
Sbjct: 114 ENDFGIDSKDIEICFSGNRGYHVHVYDERFRNLGTMERREIVDYLTL 160


>gi|435847163|ref|YP_007309413.1| DNA primase small subunit [Natronococcus occultus SP4]
 gi|433673431|gb|AGB37623.1| DNA primase small subunit [Natronococcus occultus SP4]
          Length = 391

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 13/93 (13%)

Query: 99  KMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACK-----ILDTALREDFDFQLLL 153
           +  +LVFD+D    D + N   G D     +  M   CK     +LD  L  DF F+ L 
Sbjct: 91  QSADLVFDLDA---DHLPNVTLGED----SYAEMLATCKDALLRLLDF-LENDFAFEELE 142

Query: 154 WVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
            VFSG RG H  V DE+   LD   R  + +Y+
Sbjct: 143 IVFSGGRGYHVHVRDESVRHLDREHRREIVDYV 175


>gi|448385438|ref|ZP_21563944.1| DNA primase small subunit [Haloterrigena thermotolerans DSM 11522]
 gi|445656933|gb|ELZ09765.1| DNA primase small subunit [Haloterrigena thermotolerans DSM 11522]
          Length = 391

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 99  KMKELVFDIDMTDYDDVR-NCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFS 157
           +  +LVFD+D      V     S A++  KC   +    ++LD  L  DF F+ L  VFS
Sbjct: 91  QSADLVFDLDADHLPSVTLGEDSYAEMLSKCKDAL---LRLLDF-LETDFAFEDLEIVFS 146

Query: 158 GRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           G RG H  V DE  L LD   R  + +Y+
Sbjct: 147 GGRGYHVHVRDENVLGLDREHRREIVDYV 175


>gi|448330842|ref|ZP_21520118.1| DNA primase small subunit [Natrinema versiforme JCM 10478]
 gi|445610678|gb|ELY64447.1| DNA primase small subunit [Natrinema versiforme JCM 10478]
          Length = 391

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 13/93 (13%)

Query: 99  KMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACK-----ILDTALREDFDFQLLL 153
           +  +LVFD+D        +   G  + E  +  M   CK     +LD  L +DF F+ L 
Sbjct: 91  QSADLVFDLDA-------DHLPGVTLGEDSYAEMLAQCKDALLRLLDF-LEDDFAFEDLE 142

Query: 154 WVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
            VFSG RG H  V D   L LD   R  + +Y+
Sbjct: 143 IVFSGGRGYHVHVRDTNVLELDREHRREIVDYV 175


>gi|448391676|ref|ZP_21566771.1| DNA primase small subunit [Haloterrigena salina JCM 13891]
 gi|445665088|gb|ELZ17766.1| DNA primase small subunit [Haloterrigena salina JCM 13891]
          Length = 391

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 99  KMKELVFDIDMTDYDDVRNCCSGADI-CEKCWRYMSIACKILDTALREDFDFQLLLWVFS 157
           +  +LVFD+D    D + +   G D   E   +      ++LD  L +DF F+ L  VFS
Sbjct: 91  QSADLVFDLDA---DHLPSVTLGEDTYAEMLAKCKDALFRLLDF-LEDDFGFEDLEVVFS 146

Query: 158 GRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           G RG H  V DE  L LD   R  + +Y+
Sbjct: 147 GGRGYHVHVRDENVLHLDREHRREIVDYV 175


>gi|448348741|ref|ZP_21537589.1| DNA primase small subunit [Natrialba taiwanensis DSM 12281]
 gi|445642402|gb|ELY95470.1| DNA primase small subunit [Natrialba taiwanensis DSM 12281]
          Length = 391

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 20/145 (13%)

Query: 50  GDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPK---MKELVFD 106
           G    R+ S     EL + L+++ P+ +   A     P      S  + K     +LVFD
Sbjct: 43  GTTMVRHRSLLELGELSEFLVRKRPRHVYFSAGRFRDPS----ASSMSEKDWQSADLVFD 98

Query: 107 IDMTDYDDVRNCCSGADICEKCWRYMSIACK-----ILDTALREDFDFQLLLWVFSGRRG 161
           +D    D + N   G D     +  M   CK     +LD  L  DF F+ L +VFSG RG
Sbjct: 99  LDA---DHLPNVTLGED----TYAEMLATCKDALFRLLDF-LENDFGFEELEFVFSGGRG 150

Query: 162 IHCWVCDEAALALDGRGRSCLAEYM 186
            H  V D+    LD   R  + +Y+
Sbjct: 151 YHVHVRDDNVRHLDREHRREIVDYV 175


>gi|433590964|ref|YP_007280460.1| DNA primase, eukaryotic-type, small subunit, putative [Natrinema
           pellirubrum DSM 15624]
 gi|448334497|ref|ZP_21523672.1| DNA primase small subunit [Natrinema pellirubrum DSM 15624]
 gi|433305744|gb|AGB31556.1| DNA primase, eukaryotic-type, small subunit, putative [Natrinema
           pellirubrum DSM 15624]
 gi|445619829|gb|ELY73346.1| DNA primase small subunit [Natrinema pellirubrum DSM 15624]
          Length = 391

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 99  KMKELVFDIDMTDYDDVR-NCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFS 157
           +  +LVFD+D      V     S A++  KC   +    ++LD  L  DF F+ L  VFS
Sbjct: 91  QSADLVFDLDADHLPSVTLGEDSYAEMLAKCKDAL---LRLLDF-LETDFAFEDLEIVFS 146

Query: 158 GRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           G RG H  V DE  L LD   R  + +Y+
Sbjct: 147 GGRGYHVHVRDENVLGLDREHRREIVDYV 175


>gi|448592561|ref|ZP_21651668.1| DNA primase small subunit [Haloferax elongans ATCC BAA-1513]
 gi|445731566|gb|ELZ83150.1| DNA primase small subunit [Haloferax elongans ATCC BAA-1513]
          Length = 385

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 27/140 (19%)

Query: 70  IKRCPQKIDLGAIYDICPKDHLQHSVFTP----------------KMKELVFDIDMTDYD 113
           + R    +DLG + D   +   +H  F+                 +  +LVFDID     
Sbjct: 45  MHRHQSLLDLGELDDYLTRSAPRHVYFSSARFSDPGASSMDEKGWRGADLVFDIDA---- 100

Query: 114 DVRNCCSGADICEKCWRYMSIACK--ILDTA--LREDFDFQLLLWVFSGRRGIHCWVCDE 169
              +   G D  E  +  M    K  +LD    L  DFDF  +  VFSG RG H  V D+
Sbjct: 101 ---DHLPGVDPDETNYADMLEFGKEALLDLVDLLERDFDFDEMQVVFSGGRGYHVHVRDD 157

Query: 170 AALALDGRGRSCLAEYMSVL 189
           +   LD   R  + +Y+  +
Sbjct: 158 SVRQLDSDARREIVDYIRAI 177


>gi|393795545|ref|ZP_10378909.1| DNA primase small subunit, partial [Candidatus Nitrosoarchaeum
           limnia BG20]
          Length = 222

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 70/183 (38%), Gaps = 32/183 (17%)

Query: 41  KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKM 100
           +REF F        R+IS     EL   L+K  P  +         P  +L  +    K 
Sbjct: 32  EREFGFQKFNSGMTRHISIKDDKELHLLLMKNVPSDVYCSNACYSFP--NLPMNEKDWKE 89

Query: 101 KELVFDIDMTDYD-------DVRNCCSGADI------CEKC----WRYMSIACK-ILDTA 142
            +L+FDID  D +        V  C   +++      C KC        S+ CK  +DT+
Sbjct: 90  ADLIFDIDAKDLNLKCRKNHTVSKCSECSEVSAESMKCNKCNSSKLEKKSLPCKNCIDTS 149

Query: 143 ----------LREDFDFQL--LLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLT 190
                     L ED D Q   +   FSG  G H +V D     L  R RS L +Y+    
Sbjct: 150 KNEVSKLSEILTEDLDVQQNNIHVYFSGNEGFHVYVYDSQFQQLGSRERSELTDYIMFNG 209

Query: 191 ANP 193
           A P
Sbjct: 210 AIP 212


>gi|448578362|ref|ZP_21643797.1| DNA primase small subunit [Haloferax larsenii JCM 13917]
 gi|445726903|gb|ELZ78519.1| DNA primase small subunit [Haloferax larsenii JCM 13917]
          Length = 385

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 11/95 (11%)

Query: 99  KMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACK--ILDTA--LREDFDFQLLLW 154
           +  +LVFDID        +   G D  E  +  M    K  +LD    L  DFDF  +  
Sbjct: 90  RGADLVFDIDA-------DHLPGVDPDETNYADMLEFGKEALLDLVDLLERDFDFDEMQV 142

Query: 155 VFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           VFSG RG H  V D++   LD   R  + +Y+  +
Sbjct: 143 VFSGGRGYHVHVRDDSVRQLDSDARREIVDYIRAI 177


>gi|229578960|ref|YP_002837358.1| DNA primase small subunit [Sulfolobus islandicus Y.G.57.14]
 gi|259534478|sp|C3NDP7.1|PRIS_SULIY RecName: Full=Probable DNA primase small subunit
 gi|228009674|gb|ACP45436.1| DNA primase small subunit [Sulfolobus islandicus Y.G.57.14]
          Length = 330

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 29/171 (16%)

Query: 42  REFSFT-LNGDIYARYISYNSPNELKKDLIKR-CPQKIDL-GAIYDICPKDHLQHSVFTP 98
           REF+      D+Y R++S++S  EL+  L+ R  P  +    A Y +     ++   +  
Sbjct: 36  REFALQPFGSDMYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPSARDMEEKAWMG 95

Query: 99  KMKELVFDID---MTDYDDVRNC--CSGADICEKCWR-------YMSIACKILDTALRE- 145
              +L+FDID   +     +R C  C  A   EKC R       Y+ +  + +   L E 
Sbjct: 96  --SDLLFDIDADHICKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECIKRGLEEA 153

Query: 146 ---------DFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYM 186
                    DF  +  ++ FSG RG H  V C      LD   R  +AEY+
Sbjct: 154 RNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGDCALLDSDERKEIAEYV 203


>gi|315426568|dbj|BAJ48198.1| DNA primase small subunit [Candidatus Caldiarchaeum subterraneum]
 gi|343485286|dbj|BAJ50940.1| DNA primase small subunit [Candidatus Caldiarchaeum subterraneum]
          Length = 405

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 38/193 (19%)

Query: 31  LFY--GNLDNFR-----KREFSFTLNGD-IYARYISYNSPNELKKDLIKRCPQKIDLGAI 82
           +FY  G +D F+     +REF +   G  +  R++S+ S +EL+K L++  P  +   A 
Sbjct: 18  IFYEKGYVDVFQPFSVERREFGYMPFGQRVMVRHLSFRSFDELRKMLVREAPLHVYRSAA 77

Query: 83  YDICPKDHLQHSVFTPKMKELVFDIDMTDYD-------DVRNCCS----GADI---CEKC 128
               P+  ++   +     EL+FDID    +       D   C S    GA+    C  C
Sbjct: 78  LYQYPQAPMEEKGWLGA--ELIFDIDADHLETSCKPAHDYYVCLSCGQRGAEKTQRCGVC 135

Query: 129 WRYMSIACKILDTALRE--------------DFDFQLLLWVFSGRRGIHCWVCDEAALAL 174
              M+    + DT L +              DF        FSG RG H  V  +  L L
Sbjct: 136 GGEMAEVKMVCDTCLEKTKQELLKLIDFMENDFGLGSFTVSFSGNRGYHLAVEAKEVLEL 195

Query: 175 DGRGRSCLAEYMS 187
               R  + +Y++
Sbjct: 196 GRDARQEIVDYVT 208


>gi|448337153|ref|ZP_21526235.1| DNA primase small subunit [Natrinema pallidum DSM 3751]
 gi|445626499|gb|ELY79842.1| DNA primase small subunit [Natrinema pallidum DSM 3751]
          Length = 391

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 4/132 (3%)

Query: 55  RYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDD 114
           R+ S     +L + L+++ PQ +   A     P     H     +  +LVFD+D    D 
Sbjct: 48  RHRSLLELGDLSEFLVRKRPQHVYFSAGRFRDPGASSMHEK-EWQSADLVFDLDA---DH 103

Query: 115 VRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALAL 174
           + +   G D   +       A + L   L  DF F+ L  VFSG RG H  V DE  L L
Sbjct: 104 LPSVTLGEDSYGEMLAKCQDALRRLLEFLENDFAFEDLEIVFSGGRGYHVHVRDENVLHL 163

Query: 175 DGRGRSCLAEYM 186
           +   R  + +Y+
Sbjct: 164 EREHRREIVDYV 175


>gi|448361748|ref|ZP_21550361.1| DNA primase small subunit [Natrialba asiatica DSM 12278]
 gi|445649428|gb|ELZ02365.1| DNA primase small subunit [Natrialba asiatica DSM 12278]
          Length = 391

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 20/145 (13%)

Query: 50  GDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPK---MKELVFD 106
           G    R+ S     EL + L+++ P+ +   A     P      S  + K     +LVFD
Sbjct: 43  GTTMVRHRSLLELGELSEFLVRKRPRHVYFSAGRFRDPS----ASSMSEKDWQSADLVFD 98

Query: 107 IDMTDYDDVRNCCSGADICEKCWRYMSIACK-----ILDTALREDFDFQLLLWVFSGRRG 161
           +D    D + N   G D     +  M   CK     +LD  L +DF F+ L  VFSG RG
Sbjct: 99  LDA---DHLPNVTLGED----TYAEMLATCKEALFRLLD-FLEDDFGFEELELVFSGGRG 150

Query: 162 IHCWVCDEAALALDGRGRSCLAEYM 186
            H  V D+    LD   R  + +Y+
Sbjct: 151 YHVHVRDDNVRHLDREHRREIVDYV 175


>gi|448317573|ref|ZP_21507123.1| DNA primase small subunit [Natronococcus jeotgali DSM 18795]
 gi|445602964|gb|ELY56934.1| DNA primase small subunit [Natronococcus jeotgali DSM 18795]
          Length = 391

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 13/93 (13%)

Query: 99  KMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACK-----ILDTALREDFDFQLLL 153
           +  +LVFD+D    D + N   G D     +  M   CK     +LD  L +DF F+ L 
Sbjct: 91  QSADLVFDLDA---DHLPNVTLGED----SYAEMLATCKDALLRLLDF-LEDDFAFEDLE 142

Query: 154 WVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
            VFSG RG H  V DE+   LD   R  + +Y+
Sbjct: 143 IVFSGGRGYHVHVRDESIRHLDREHRREVVDYV 175


>gi|448314296|ref|ZP_21503995.1| DNA primase small subunit [Natronolimnobius innermongolicus JCM
           12255]
 gi|445595408|gb|ELY49517.1| DNA primase small subunit [Natronolimnobius innermongolicus JCM
           12255]
          Length = 391

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 99  KMKELVFDIDMTDYDDVR-NCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFS 157
           +  +LVFD+D      V     S A++  KC   +    ++LD  L +DF F+ L  VFS
Sbjct: 91  QSADLVFDLDADHLPSVTLGEDSYAEMLAKCKDAL---LRLLDF-LEDDFGFEDLEVVFS 146

Query: 158 GRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           G RG H  V DE+ L L+   R  + +Y+
Sbjct: 147 GGRGYHVHVRDESVLHLEREHRREIVDYV 175


>gi|448303006|ref|ZP_21492956.1| DNA primase small subunit [Natronorubrum sulfidifaciens JCM 14089]
 gi|445594013|gb|ELY48180.1| DNA primase small subunit [Natronorubrum sulfidifaciens JCM 14089]
          Length = 391

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 29/131 (22%)

Query: 77  IDLGAIYDICPKDHLQHSVFTP----------------KMKELVFDIDMTDYDDVR-NCC 119
           ++LG I +   +   QH  F+                 +  +LVFD+D      V     
Sbjct: 53  LELGDISEFLVRKRPQHVYFSAGRFRDPGASSMHEKDWQAADLVFDLDADHLPSVTLGED 112

Query: 120 SGADICEKC----WRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALD 175
           S A++  KC    WR +          L +DF F+ L  VFSG RG H  V DE  L L+
Sbjct: 113 SYAEMLAKCKDALWRLLDF--------LEDDFGFEDLEIVFSGGRGYHVHVRDENVLHLE 164

Query: 176 GRGRSCLAEYM 186
              R  + +Y+
Sbjct: 165 REHRREIVDYV 175


>gi|448630270|ref|ZP_21672925.1| DNA primase small subunit [Haloarcula vallismortis ATCC 29715]
 gi|445756193|gb|EMA07568.1| DNA primase small subunit [Haloarcula vallismortis ATCC 29715]
          Length = 392

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 110/298 (36%), Gaps = 82/298 (27%)

Query: 77  IDLGAIYDICPKDHLQHSVFTP----------------KMKELVFDIDMTDYDDVRNCCS 120
           +DLG I D   +   +H  F+                 +  +LVFD+D    D + +   
Sbjct: 53  LDLGEIEDFLGRRKPRHVYFSAGRYDEPSASTMSDKGWRSSDLVFDLDA---DHLPSVVL 109

Query: 121 G----ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDG 176
           G    A++ EKC   +    ++LD  L  DF F  L  VFSG RG H  V DE    L+ 
Sbjct: 110 GEDSYAEMLEKCKDAL---LRLLDF-LEGDFGFDDLTIVFSGGRGYHVHVRDERIRHLER 165

Query: 177 RGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKER-- 234
             R  + +Y        V+ + L                  +F++L++E+ +  T  R  
Sbjct: 166 DARREVVDY--------VRGIGL------------------EFDELVDEESVAGTAGRSS 199

Query: 235 --QTKVLGLVSNGDIRAEIE--------------------KEWTRIGPGQDVEKWDRLVA 272
             Q + L        RA                       +E+ RIG G+     +   +
Sbjct: 200 PAQKRTLSTEGGWSARAHRHMLDLVDELLAMEESDALDRLQEYDRIGEGKATAALNAARS 259

Query: 273 IIKHHQAKNSD-RKLKYAIEEILLELAYPR----LDIHVSKGVNHLLKSPFCVHPKTG 325
             +  +A N D     Y + +ILL          +D  V+   N L++ P  +H  +G
Sbjct: 260 NYEQLEAGNIDVHPAFYQLAKILLHEVVAADNAPIDEPVTTDTNRLIRLPGSLHGGSG 317


>gi|385773130|ref|YP_005645696.1| DNA primase small subunit, PriSL [Sulfolobus islandicus HVE10/4]
 gi|385775760|ref|YP_005648328.1| DNA primase small subunit, PriSL [Sulfolobus islandicus REY15A]
 gi|323474508|gb|ADX85114.1| DNA primase small subunit, PriSL [Sulfolobus islandicus REY15A]
 gi|323477244|gb|ADX82482.1| DNA primase small subunit, PriSL [Sulfolobus islandicus HVE10/4]
          Length = 330

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 29/171 (16%)

Query: 42  REFSFT-LNGDIYARYISYNSPNELKKDLIKR-CPQKIDL-GAIYDICPKDHLQHSVFTP 98
           REF+      D Y R++S++S  EL+  L+ R  P  +    A Y +     ++   +  
Sbjct: 36  REFALQPFGSDTYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPSARDMEEKAWMG 95

Query: 99  KMKELVFDID---MTDYDDVRNC--CSGADICEKCWR-------YMSIACKILDTALRE- 145
              +L+FDID   +     +R C  C  A   EKC R       Y+ +  + +   L E 
Sbjct: 96  --SDLLFDIDADHICKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECIKRGLEEA 153

Query: 146 ---------DFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYM 186
                    DF  +  ++ FSG RG H  V C      LD   R  +AEY+
Sbjct: 154 RNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGDCALLDSDERKEIAEYV 203


>gi|227827453|ref|YP_002829232.1| DNA primase small subunit [Sulfolobus islandicus M.14.25]
 gi|229584668|ref|YP_002843169.1| DNA primase small subunit [Sulfolobus islandicus M.16.27]
 gi|259534458|sp|C3N549.1|PRIS_SULIA RecName: Full=Probable DNA primase small subunit
 gi|259534471|sp|C3MYF5.1|PRIS_SULIM RecName: Full=Probable DNA primase small subunit
 gi|227459248|gb|ACP37934.1| DNA primase small subunit [Sulfolobus islandicus M.14.25]
 gi|228019717|gb|ACP55124.1| DNA primase small subunit [Sulfolobus islandicus M.16.27]
          Length = 330

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 29/171 (16%)

Query: 42  REFSFT-LNGDIYARYISYNSPNELKKDLIKR-CPQKIDL-GAIYDICPKDHLQHSVFTP 98
           REF+      D Y R++S++S  EL+  L+ R  P  +    A Y +     ++   +  
Sbjct: 36  REFALQPFGSDTYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPAARDMEEKAWMG 95

Query: 99  KMKELVFDID---MTDYDDVRNC--CSGADICEKCWR-------YMSIACKILDTALRE- 145
              +L+FDID   +     +R C  C  A   EKC R       Y+ +  + +   L E 
Sbjct: 96  --SDLLFDIDADHICKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECIKRGLEEA 153

Query: 146 ---------DFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYM 186
                    DF  +  ++ FSG RG H  V C      LD   R  +AEY+
Sbjct: 154 RNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGDCALLDSDERKEIAEYV 203


>gi|227830146|ref|YP_002831925.1| DNA primase small subunit [Sulfolobus islandicus L.S.2.15]
 gi|229582287|ref|YP_002840686.1| DNA primase small subunit [Sulfolobus islandicus Y.N.15.51]
 gi|284997563|ref|YP_003419330.1| DNA primase, small subunit [Sulfolobus islandicus L.D.8.5]
 gi|259534466|sp|C3MPG7.1|PRIS_SULIL RecName: Full=Probable DNA primase small subunit
 gi|259534474|sp|C3NI04.1|PRIS_SULIN RecName: Full=Probable DNA primase small subunit
 gi|227456593|gb|ACP35280.1| DNA primase small subunit [Sulfolobus islandicus L.S.2.15]
 gi|228013003|gb|ACP48764.1| DNA primase small subunit [Sulfolobus islandicus Y.N.15.51]
 gi|284445458|gb|ADB86960.1| DNA primase, small subunit [Sulfolobus islandicus L.D.8.5]
          Length = 330

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 29/171 (16%)

Query: 42  REFSFT-LNGDIYARYISYNSPNELKKDLIKR-CPQKIDL-GAIYDICPKDHLQHSVFTP 98
           REF+      D Y R++S++S  EL+  L+ R  P  +    A Y +     ++   +  
Sbjct: 36  REFALQPFGSDTYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPSARDMEEKAWMG 95

Query: 99  KMKELVFDID---MTDYDDVRNC--CSGADICEKCWR-------YMSIACKILDTALRE- 145
              +L+FDID   +     +R C  C  A   EKC R       Y+ +  + +   L E 
Sbjct: 96  --SDLLFDIDADHICKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECIKRGLEEA 153

Query: 146 ---------DFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYM 186
                    DF  +  ++ FSG RG H  V C      LD   R  +AEY+
Sbjct: 154 RNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGDCALLDSDERKEIAEYV 203


>gi|448459789|ref|ZP_21596839.1| DNA primase small subunit [Halorubrum lipolyticum DSM 21995]
 gi|445808241|gb|EMA58315.1| DNA primase small subunit [Halorubrum lipolyticum DSM 21995]
          Length = 387

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 99  KMKELVFDIDMTDYDDVR-NCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFS 157
           +  +LVFD+D      V     S  ++  +C R +      LD     DF F  L  VFS
Sbjct: 91  RSADLVFDLDADHLPGVDPETTSYPEMLAECKRALLRLLDFLDG----DFAFDDLSVVFS 146

Query: 158 GRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           G RG H  V DE+   LD   R  + +Y+  +
Sbjct: 147 GGRGYHVHVRDESVRELDSEARREVVDYVRAI 178


>gi|47179087|emb|CAG14371.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 106

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)

Query: 223 LEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHH---QA 279
           L EQ++L  KE   KVL LV +  +   +      +  G + +       II        
Sbjct: 18  LHEQDVLGRKESVEKVLALVPDDILFLHL----FLLDKGTNRKNSIHFCLIICDSFDLTL 73

Query: 280 KNSDRKLKYAIEEILLELAYPRLDIHVSKGVNH 312
             + +K ++  +EI+L+  YPRLD++VSKGVNH
Sbjct: 74  TFTAKKGQHFEKEIMLQYCYPRLDVNVSKGVNH 106


>gi|282889850|ref|ZP_06298389.1| hypothetical protein pah_c004o264 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500424|gb|EFB42704.1| hypothetical protein pah_c004o264 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 533

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 26/149 (17%)

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDE--------AALALDGRG 178
           K W  + +  K +  A+R D DF+ +  + S R+ +  W  +E        A LA+D   
Sbjct: 343 KAWYVIDVQAKSILKAIR-DKDFESIEKMISDRKSVTPWFIEENIFGLWHAAKLAMDYEN 401

Query: 179 RSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKV 238
             C A     L     K   L  DV+H           DQF++L     L ++ +R  KV
Sbjct: 402 -CCFA-----LLKGSSKSFLLLLDVMHISF--------DQFQELANLNNLSNSNDRSKKV 447

Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKW 267
           L LVSN D   +++K+   +   ++ E W
Sbjct: 448 LRLVSNIDKNEDLKKQ---LKANKEREMW 473


>gi|284165835|ref|YP_003404114.1| DNA primase, small subunit [Haloterrigena turkmenica DSM 5511]
 gi|284015490|gb|ADB61441.1| DNA primase, small subunit [Haloterrigena turkmenica DSM 5511]
          Length = 391

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 99  KMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSG 158
           +  +LVFD+D    D + +   G D   +       A   L   L +DF F+ L  VFSG
Sbjct: 91  QSADLVFDLDA---DHLPSVTLGEDSYAEMLAKCKDALFRLLGFLEDDFGFEDLEIVFSG 147

Query: 159 RRGIHCWVCDEAALALDGRGRSCLAEYM 186
            RG H  V DE  L LD   R  + +Y+
Sbjct: 148 GRGYHVHVRDENVLHLDREHRREIVDYV 175


>gi|448322490|ref|ZP_21511960.1| DNA primase small subunit [Natronococcus amylolyticus DSM 10524]
 gi|445601248|gb|ELY55237.1| DNA primase small subunit [Natronococcus amylolyticus DSM 10524]
          Length = 391

 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 13/93 (13%)

Query: 99  KMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACK-----ILDTALREDFDFQLLL 153
           +  +LVFD+D    D + N   G D     +  M   CK     +LD  L +DF F+ L 
Sbjct: 91  QSADLVFDLDA---DHLPNVTLGED----SYAEMLATCKDALLRLLDF-LEDDFAFEELE 142

Query: 154 WVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
            VFSG RG H  V DE+    D   R  + +Y+
Sbjct: 143 IVFSGGRGYHVHVRDESIRHFDREHRREVVDYV 175


>gi|238619609|ref|YP_002914434.1| DNA primase small subunit [Sulfolobus islandicus M.16.4]
 gi|259534462|sp|C4KGQ2.1|PRIS_SULIK RecName: Full=Probable DNA primase small subunit
 gi|238380678|gb|ACR41766.1| DNA primase small subunit [Sulfolobus islandicus M.16.4]
          Length = 330

 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 29/171 (16%)

Query: 42  REFSFT-LNGDIYARYISYNSPNELKKDLIKR-CPQKIDL-GAIYDICPKDHLQHSVFTP 98
           REF+      D Y R++S++S  EL+  L+ R  P  +    A Y +     ++   +  
Sbjct: 36  REFALQPFGSDTYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPGARDMEEKAWMG 95

Query: 99  KMKELVFDID---MTDYDDVRNC--CSGADICEKCWR-------YMSIACKILDTALRE- 145
              +L+FDID   +     +R C  C  A   EKC R       Y+ +  + +   L E 
Sbjct: 96  --SDLLFDIDADHICKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECIKRGLEEA 153

Query: 146 ---------DFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYM 186
                    DF  +  ++ FSG RG H  V C      LD   R  +AEY+
Sbjct: 154 RNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGDCALLDSDERKEIAEYV 203


>gi|448678490|ref|ZP_21689497.1| DNA primase small subunit [Haloarcula argentinensis DSM 12282]
 gi|445772477|gb|EMA23522.1| DNA primase small subunit [Haloarcula argentinensis DSM 12282]
          Length = 392

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 21/127 (16%)

Query: 77  IDLGAIYDICPKDHLQHSVFTP----------------KMKELVFDIDMTDYDDVRNCCS 120
           +DLG I D   +   +H  F+                 +  +LVFD+D    D + +   
Sbjct: 53  LDLGEIEDFLGRRKPRHVYFSAGRYDEPSASTMSDKGWRSSDLVFDLDA---DHLPSVVL 109

Query: 121 GAD-ICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGR 179
           G D   E   +      ++LD  L EDF F  L  VFSG RG H  V DE    L+   R
Sbjct: 110 GEDSYAEMLAKCKDALLRLLDF-LEEDFGFDDLTVVFSGGRGYHVHVRDERIRHLERDAR 168

Query: 180 SCLAEYM 186
             + +Y+
Sbjct: 169 REIVDYV 175


>gi|336252171|ref|YP_004595278.1| DNA primase small subunit [Halopiger xanaduensis SH-6]
 gi|335336160|gb|AEH35399.1| DNA primase small subunit [Halopiger xanaduensis SH-6]
          Length = 391

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 99  KMKELVFDIDMTDYDDVRNCCSGAD-ICEKCWRYMSIACKILDTALREDFDFQLLLWVFS 157
           +  +LVFD+D    D + N   G D   E   +      ++LD  L  DF FQ +  VFS
Sbjct: 91  QSADLVFDLDA---DHLPNVTLGEDSYAEMLAKCKDALLRLLDF-LENDFAFQNMEIVFS 146

Query: 158 GRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           G RG H  V D   L L+   R  + +Y+
Sbjct: 147 GGRGYHVHVRDANVLELEREHRREIVDYV 175


>gi|448358937|ref|ZP_21547610.1| DNA primase small subunit [Natrialba chahannaoensis JCM 10990]
 gi|445644315|gb|ELY97330.1| DNA primase small subunit [Natrialba chahannaoensis JCM 10990]
          Length = 391

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 99  KMKELVFDIDMTDYDDVR-NCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFS 157
           +  +LVFD+D     DV     S A++  KC   +    ++LD  L  DF F+ L  VFS
Sbjct: 91  QSADLVFDLDADHLPDVTLGEDSYAEMLAKCKEAL---FRLLDF-LENDFGFEELEIVFS 146

Query: 158 GRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           G RG H  V D+    LD   R  + +Y+
Sbjct: 147 GGRGYHVHVRDDNVRHLDREHRREIVDYV 175


>gi|332284368|ref|YP_004416279.1| hypothetical protein PT7_1115 [Pusillimonas sp. T7-7]
 gi|330428321|gb|AEC19655.1| hypothetical protein PT7_1115 [Pusillimonas sp. T7-7]
          Length = 284

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 17/155 (10%)

Query: 166 VCDEAALALDGRGRSCLAEYMSVLTANPVKKVF--LTGDV---LHPHLKRAKLIIEDQFE 220
           VCD A  A +  G +   E++ VL  +P K     L+G +       L      +++Q  
Sbjct: 17  VCDYAIWAANRLGVTL--EFLHVLDRHPEKAAVSDLSGSIGLDAQETLLTQLADLDEQRS 74

Query: 221 KLLEE--QELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQ 278
           KL +E  +++L T +R+T+  G     +     ++  + I   QDV+   RL  + +H Q
Sbjct: 75  KLAQEHGRQILDTAKRRTQAAGF----ETVETRQRHGSLIEAAQDVQPEARLYVLGQHEQ 130

Query: 279 AKNSDRK-LKYAIEEILLELAYPRLDIHVSKGVNH 312
             NS R    +  E ++  L  P L   VSKGV H
Sbjct: 131 TANSSRSYFDHNAERVVRSLERPVL---VSKGVFH 162


>gi|448346296|ref|ZP_21535182.1| DNA primase small subunit [Natrinema altunense JCM 12890]
 gi|445632885|gb|ELY86091.1| DNA primase small subunit [Natrinema altunense JCM 12890]
          Length = 391

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 99  KMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSG 158
           +  +LVFD+D    D + +   G D   +       A + L   L  DF F+ L  VFSG
Sbjct: 91  QSADLVFDLDA---DHLPSVTLGEDSYGEMLAKCQDALRRLLEFLENDFAFEDLEIVFSG 147

Query: 159 RRGIHCWVCDEAALALDGRGRSCLAEYM 186
            RG H  V DE  L L+   R  + +Y+
Sbjct: 148 GRGYHVHVRDENVLHLEREHRREIVDYV 175


>gi|448368963|ref|ZP_21555730.1| DNA primase small subunit [Natrialba aegyptia DSM 13077]
 gi|445651506|gb|ELZ04414.1| DNA primase small subunit [Natrialba aegyptia DSM 13077]
          Length = 391

 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 13/93 (13%)

Query: 99  KMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACK-----ILDTALREDFDFQLLL 153
           +  +LVFD+D    D + N   G D     +  M   CK     +LD  L  DF F+ L 
Sbjct: 91  QSADLVFDLDA---DHLPNVTLGED----TYAEMLATCKDALFRLLDF-LENDFGFEELE 142

Query: 154 WVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
            VFSG RG H  V D+    LD   R  + +Y+
Sbjct: 143 LVFSGGRGYHVHVRDDNVRHLDREHRREIVDYV 175


>gi|289580094|ref|YP_003478560.1| DNA primase, small subunit [Natrialba magadii ATCC 43099]
 gi|448281333|ref|ZP_21472639.1| DNA primase small subunit [Natrialba magadii ATCC 43099]
 gi|289529647|gb|ADD03998.1| DNA primase, small subunit [Natrialba magadii ATCC 43099]
 gi|445578755|gb|ELY33155.1| DNA primase small subunit [Natrialba magadii ATCC 43099]
          Length = 391

 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 13/93 (13%)

Query: 99  KMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACK-----ILDTALREDFDFQLLL 153
           +  +LVFD+D     DV        + E  +  M   CK     +LD  L  DF F+ L 
Sbjct: 91  QSADLVFDLDADHLPDV-------TLGEDSYAEMLATCKEALFRLLDF-LENDFGFEELE 142

Query: 154 WVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
            VFSG RG H  V D+    LD   R  + +Y+
Sbjct: 143 IVFSGGRGYHVHVRDDNVRHLDREHRREIVDYV 175


>gi|55377204|ref|YP_135054.1| DNA primase small subunit [Haloarcula marismortui ATCC 43049]
 gi|62287014|sp|Q5V554.1|PRIS_HALMA RecName: Full=Probable DNA primase small subunit
 gi|55229929|gb|AAV45348.1| eukaryotic-type DNA primase small subunit [Haloarcula marismortui
           ATCC 43049]
          Length = 392

 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 19/126 (15%)

Query: 77  IDLGAIYDICPKDHLQHSVFTP----------------KMKELVFDIDMTDYDDVRNCCS 120
           +DLG I D   +   +H  F+                 +  +LVFD+D    D + +   
Sbjct: 53  LDLGEIEDFLGRRKPRHVYFSAGRYDEPSASTMSDKGWRSSDLVFDLDA---DHLPSVVL 109

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           G D   +       A + L   L +DF F  L  VFSG RG H  V DE    L+   R 
Sbjct: 110 GEDSYAEMLAKCKDALRRLLDFLEDDFGFDDLTIVFSGGRGYHVHVRDERIRHLERDARR 169

Query: 181 CLAEYM 186
            + +Y+
Sbjct: 170 EVVDYV 175


>gi|448640522|ref|ZP_21677425.1| DNA primase small subunit [Haloarcula sinaiiensis ATCC 33800]
 gi|448651452|ref|ZP_21680521.1| DNA primase small subunit [Haloarcula californiae ATCC 33799]
 gi|445761832|gb|EMA13071.1| DNA primase small subunit [Haloarcula sinaiiensis ATCC 33800]
 gi|445770979|gb|EMA22037.1| DNA primase small subunit [Haloarcula californiae ATCC 33799]
          Length = 392

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 19/126 (15%)

Query: 77  IDLGAIYDICPKDHLQHSVFTP----------------KMKELVFDIDMTDYDDVRNCCS 120
           +DLG I D   +   +H  F+                 +  +LVFD+D    D + +   
Sbjct: 53  LDLGEIEDFLGRRKPRHVYFSAGRYDEPSASTMSDKGWRSSDLVFDLDA---DHLPSVVL 109

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           G D   +       A + L   L +DF F  L  VFSG RG H  V DE    L+   R 
Sbjct: 110 GEDSYAEMLAKCKDALRRLLDFLEDDFGFDDLTIVFSGGRGYHVHVRDERIRHLERDARR 169

Query: 181 CLAEYM 186
            + +Y+
Sbjct: 170 EVVDYV 175


>gi|344211320|ref|YP_004795640.1| DNA primase small subunit [Haloarcula hispanica ATCC 33960]
 gi|343782675|gb|AEM56652.1| DNA primase small subunit [Haloarcula hispanica ATCC 33960]
          Length = 392

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 21/127 (16%)

Query: 77  IDLGAIYDICPKDHLQHSVFTP----------------KMKELVFDIDMTDYDDVRNCCS 120
           +DLG I D   +   +H  F+                 +  +LVFD+D    D + +   
Sbjct: 53  LDLGEIEDFLGRRKPRHVYFSAGRYDEPSASTMSDKGWRSSDLVFDLDA---DHLPSVVL 109

Query: 121 GAD-ICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGR 179
           G D   E   +      ++LD  L +DF F+ L  VFSG RG H  V DE    L+   R
Sbjct: 110 GEDSYAEMLAKCKDALLRLLDF-LEDDFGFEDLTVVFSGGRGYHVHVRDERIRHLERDAR 168

Query: 180 SCLAEYM 186
             + +Y+
Sbjct: 169 REIVDYV 175


>gi|322368822|ref|ZP_08043389.1| DNA primase, small subunit [Haladaptatus paucihalophilus DX253]
 gi|320551553|gb|EFW93200.1| DNA primase, small subunit [Haladaptatus paucihalophilus DX253]
          Length = 390

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 20/126 (15%)

Query: 77  IDLGAIYDICPKDHLQHSVFTP----------------KMKELVFDIDMTDYDDVRNCCS 120
           +DLG +     ++  +H  F+                 +  +LVFD+D      V     
Sbjct: 53  LDLGTLGGFLERERPRHVYFSAGRYRDPGAGTMDAKGWQSADLVFDLDADHLPGVTPETP 112

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            AD+  +C          L   L  DF F+ +  VFSG RG H  V DE    LD  GR 
Sbjct: 113 YADMLARC----KEELLDLLDILERDFGFEDMTIVFSGGRGYHVHVRDEDVKGLDREGRR 168

Query: 181 CLAEYM 186
            + +Y+
Sbjct: 169 EIVDYV 174


>gi|448400347|ref|ZP_21571339.1| DNA primase small subunit, partial [Haloterrigena limicola JCM
           13563]
 gi|445667370|gb|ELZ20013.1| DNA primase small subunit, partial [Haloterrigena limicola JCM
           13563]
          Length = 266

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 99  KMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSG 158
           +  +LVFD+D    D + +   G D   +       A   L   L +DF F+ L  VFSG
Sbjct: 91  QSADLVFDLDA---DHLPSVTLGEDSYAEMLAKCKDALGRLLEFLEDDFAFENLEIVFSG 147

Query: 159 RRGIHCWVCDEAALALDGRGRSCLAEYM 186
            RG H  V DE  L L+   R  + +Y+
Sbjct: 148 GRGYHVHVRDENVLHLEREHRREIVDYV 175


>gi|48477874|ref|YP_023580.1| DNA primase small subunit [Picrophilus torridus DSM 9790]
 gi|62287054|sp|Q6L0W5.1|PRIS_PICTO RecName: Full=Probable DNA primase small subunit
 gi|48430522|gb|AAT43387.1| DNA primase small subunit [Picrophilus torridus DSM 9790]
          Length = 370

 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 125/294 (42%), Gaps = 36/294 (12%)

Query: 41  KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKD-HLQHSVFTPK 99
           KRE  +        R++S+ +  E++  + +  P+ +   + Y I P +  ++  ++  +
Sbjct: 28  KREIGYIPFSGTMIRHLSFRNHREIESFVKRNTPRHLYYSSAYYIKPDEKRMEKKIW--E 85

Query: 100 MKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALRE-DFDFQLLLWVFSG 158
             EL+FD+D  D+    +  +  +I  +  +++S   ++L+  + +  FD   +   FSG
Sbjct: 86  GAELIFDLD-ADHIPGSDKMTYEEILLEVKKHVS---RLLNYLINDFGFDDDSIKLYFSG 141

Query: 159 RRGIHCWVCDEAALALDGRGRSCLAEY--MSVLTANPVKKVFLTGDVLHPHLKRAKLIIE 216
            RG H  V  +   +LD   R  +  Y  M   T + + +         P LKR    I 
Sbjct: 142 GRGYHVHVVSDRVYSLDSDARREIGNYIKMEDFTIDNIIRASREKPESGP-LKRFNEYIS 200

Query: 217 DQFEKLLEEQELLSTK-ERQTKVLGLVSNG----DIRAEIEKEWTRIGPGQDVEKWDRLV 271
           + +      +   +   +R  K L +  +G    DI  E   E  +I   +D++  + ++
Sbjct: 201 EIYSDENYLKRFYNGDFDRYYKSLDVYKDGKKKIDIMRENNYEKFKIVSKRDLDVLNNIL 260

Query: 272 AIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTG 325
                     +D K KY+ E          +D  V+  V+ L++ P  +H KTG
Sbjct: 261 ----------NDFKDKYSAE----------IDEPVTTDVHRLIRFPGSLHGKTG 294


>gi|448688919|ref|ZP_21694656.1| DNA primase small subunit [Haloarcula japonica DSM 6131]
 gi|445778789|gb|EMA29731.1| DNA primase small subunit [Haloarcula japonica DSM 6131]
          Length = 392

 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 21/127 (16%)

Query: 77  IDLGAIYDICPKDHLQHSVFTP----------------KMKELVFDIDMTDYDDVRNCCS 120
           +DLG I D   +   +H  F+                 +  +LVFD+D    D + +   
Sbjct: 53  LDLGEIEDFLGRRKPRHVYFSAGRYDEPSASTMSDKGWRSSDLVFDLDA---DHLPSVVL 109

Query: 121 GAD-ICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGR 179
           G D   E   +      ++LD  L +DF F  L  VFSG RG H  V DE    L+   R
Sbjct: 110 GEDSYAEMLAKCKDALLRLLDF-LEDDFGFDDLTIVFSGGRGYHVHVRDERIRHLERDAR 168

Query: 180 SCLAEYM 186
             + +Y+
Sbjct: 169 REVVDYV 175


>gi|222444686|ref|ZP_03607201.1| hypothetical protein METSMIALI_00299, partial [Methanobrevibacter
           smithii DSM 2375]
 gi|222434251|gb|EEE41416.1| putative DNA primase small subunit, partial [Methanobrevibacter
           smithii DSM 2375]
          Length = 151

 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 13/131 (9%)

Query: 36  LDNFRKREFSFTLNG-DIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHS 94
           L + +KREF F  NG     RY  +     LKK L  + P    +   +   P+      
Sbjct: 28  LKDLKKREFGFDHNGKGPNDRYKVFRGRESLKKFLRYKAPFAAYISVAFYNNPRRREDW- 86

Query: 95  VFTPKMKELVFDIDMTDYDDVRNC-CSGADICEKCW-RYMSIACKILDTALREDFDFQLL 152
               +  E +FD+D  D   +R+C C G  +CE C  + + I   ++DT L++D     +
Sbjct: 87  ----QKAEYIFDVDAKDI-PIRSCQCDG--VCEVCLGQALEIVNSLIDT-LQDDLGLNNI 138

Query: 153 LWVFSGRRGIH 163
             V+SG RG H
Sbjct: 139 HLVYSG-RGYH 148


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.324    0.141    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,484,278,159
Number of Sequences: 23463169
Number of extensions: 231736037
Number of successful extensions: 519293
Number of sequences better than 100.0: 563
Number of HSP's better than 100.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 517371
Number of HSP's gapped (non-prelim): 625
length of query: 328
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 186
effective length of database: 9,027,425,369
effective search space: 1679101118634
effective search space used: 1679101118634
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 77 (34.3 bits)