BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13396
(328 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24317|PRI1_DROME DNA primase small subunit OS=Drosophila melanogaster
GN=DNApol-alpha50 PE=2 SV=2
Length = 438
Score = 311 bits (797), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 162/340 (47%), Positives = 221/340 (65%), Gaps = 19/340 (5%)
Query: 5 YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
Y+PE L +MLP YY+R+FP+ P+ RWL YG+ ++ F RE SFTL DIY RY+ +++
Sbjct: 23 YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQ 82
Query: 63 NELKKDLIKRCPQKIDLGAIYDICPKDHLQ-HSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
EL+K++ R P KID+G + PK+H TP +ELVFDIDMTDYD+VR CCSG
Sbjct: 83 AELEKEICSRNPIKIDIGPVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSG 142
Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
A +C KCW++M +A ++LD ALREDF F+ ++W+FSGRRGIHCWVCD A LDGRGR
Sbjct: 143 AGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYA 202
Query: 182 LAEYMSVLT----ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
+AEY++++T A GD H LKRA I+E FE++ LE+Q L T + T
Sbjct: 203 VAEYLNIITYASFAGGNSPRCSMGDRPHHSLKRALKIVEPMFEEIVLEDQNLFGTPKGVT 262
Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLV--AIIKHHQAKNS------DRKLKY 288
K+L +V + R E+E + + + RLV + IK+ + + RKLK
Sbjct: 263 KLLNMVHDDAARGELE---SYMQKNLEDGAHSRLVWESFIKYANSMRTSTTSAWSRKLKN 319
Query: 289 AIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
+ EI L L YPRLDI+V++G NHLLK+PFC+HP TGK+C
Sbjct: 320 IVAEIQLGLLYPRLDINVTRGFNHLLKAPFCIHPATGKVC 359
>sp|P20664|PRI1_MOUSE DNA primase small subunit OS=Mus musculus GN=Prim1 PE=1 SV=1
Length = 417
Score = 297 bits (761), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 153/330 (46%), Positives = 214/330 (64%), Gaps = 9/330 (2%)
Query: 5 YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSP 62
+DP L E+L YY+R+FPY Y RWL YG + + F+ REFSFTL DIY RY S+N+
Sbjct: 4 FDPAELPELLKLYYRRLFPYAQYYRWLNYGGVTKNYFQHREFSFTLKDDIYIRYQSFNNQ 63
Query: 63 NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
+EL+K++ K P KID+GA+Y P H ++ F + KELVFDIDMTDYDDVR CCS
Sbjct: 64 SELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCS 123
Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
ADIC KCW M++A +I+D AL+EDF F+ LWV+SGRRG+HCWVCDE+ L RS
Sbjct: 124 SADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRS 183
Query: 181 CLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKV 238
+ EY+S++ VKK + +HP ++++ II+ FE+ L Q++L KE K+
Sbjct: 184 GIVEYLSLVKGGQDVKKKVHLNEKVHPFVRKSINIIKKYFEEYALVGQDILENKENWDKI 243
Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELA 298
L LV I E+++ + + ++W+ L + Q +D+ + E++L+
Sbjct: 244 LALVPET-IHDELQRGFQKFHSSP--QRWEHLRKVANSSQNMKNDKCGPWLEWEVMLQYC 300
Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
+PRLD++VSKGVNHLLKSPF VHPKTG+I
Sbjct: 301 FPRLDVNVSKGVNHLLKSPFSVHPKTGRIS 330
>sp|P49642|PRI1_HUMAN DNA primase small subunit OS=Homo sapiens GN=PRIM1 PE=1 SV=1
Length = 420
Score = 297 bits (760), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 154/333 (46%), Positives = 217/333 (65%), Gaps = 10/333 (3%)
Query: 3 DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
+ +DP L E+L YY+R+FPY Y RWL YG + + F+ REFSFTL DIY RY S+N
Sbjct: 2 ETFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFN 61
Query: 61 SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
+ ++L+K++ K P KID+GA+Y P H ++ F + KELVFDIDMTDYDDVR C
Sbjct: 62 NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121
Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
CS ADIC KCW M++A +I+D AL+EDF F+ LWV+SGRRG+HCWVCDE+ L
Sbjct: 122 CSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181
Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
RS + EY+S++ VKK + +HP ++++ II+ FE+ L Q++L KE
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWD 241
Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILL 295
K+L LV I E+++ + + +++W+ L + +Q + K +E EI+L
Sbjct: 242 KILALVPET-IHDELQQSFQK--SHNSLQRWEHLKKVASRYQNNIKNDKYGPWLEWEIML 298
Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
+ +PRLDI+VSKG+NHLLKSPF VHPKTG+I
Sbjct: 299 QYCFPRLDINVSKGINHLLKSPFSVHPKTGRIS 331
>sp|O14215|PRI1_SCHPO DNA primase small subunit OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=pri1 PE=1 SV=1
Length = 454
Score = 271 bits (692), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 139/327 (42%), Positives = 206/327 (62%), Gaps = 9/327 (2%)
Query: 11 TEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKD 68
+E + YY+ +FP+ +WL +G + ++F REF+FTL D Y RY+S+++ ELKK+
Sbjct: 32 SETMIQYYRHLFPWKYLFQWLNHGPVVTNDFAHREFAFTLPNDAYIRYLSFSNWEELKKE 91
Query: 69 LIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
+ CP + ++G +Y P+D ++ S F P KELVFDIDMTDYDDVR CCS +ICE
Sbjct: 92 ALNLCPSRFEVGPVYSANPRDRKTIRKSTFHPLKKELVFDIDMTDYDDVRTCCSKTNICE 151
Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
KCW +++IA ++LD EDF F+ +LWV+SGRRGIH W+CDE A +LD R R +A Y+
Sbjct: 152 KCWPFITIAVQVLDICFHEDFGFKHILWVYSGRRGIHAWICDEIACSLDDRSRRMIASYL 211
Query: 187 SVLTANPVKKVFLTGDV---LHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLV 242
V+ NP V L ++ LHPHL R+ I++ F K+ LE+Q+ ++KE +L L+
Sbjct: 212 QVVVGNPQGGVRLINNLKRPLHPHLTRSLNILKSAFVKIVLEDQDPWASKEGAENLLKLL 271
Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQ-AKNSDRKLKYAIEEILLELAYPR 301
+ D+ + + K+W KW + ++ A S + A ++I+L YPR
Sbjct: 272 PDKDLASALRKKWEVDPERSSKNKWSDIDTVLASGSIASISPSVIAIAKQDIVLTYLYPR 331
Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
LD+ VS+ +NHLLKSPFCVHP T ++C
Sbjct: 332 LDVEVSRHLNHLLKSPFCVHPGTSRVC 358
>sp|P34471|PRI1_CAEEL DNA primase small subunit OS=Caenorhabditis elegans GN=pri-1 PE=3
SV=1
Length = 410
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/344 (38%), Positives = 196/344 (56%), Gaps = 26/344 (7%)
Query: 5 YDPESLTEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSP 62
Y+ L + LP YYK FP P+ +WL YG N D F +REF+F L D++ RY SYN
Sbjct: 3 YNSIRLPQDLPIYYKNFFPVKPFTKWLRYGQNNGDYFNRREFAFILADDVHIRYRSYNDE 62
Query: 63 NELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGA 122
+ K L P+K+D+GA+Y+ P ++ +H+ + +ELVFDID+TDYD VRNCC A
Sbjct: 63 HAFFKALSSTNPEKLDIGAVYNHEPINNKRHTDYQAVERELVFDIDLTDYDPVRNCCKDA 122
Query: 123 DICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCL 182
+C KCW++M +A KILD L + FDF+ +WVFSGRRG+HCWV D+ A L+ RS +
Sbjct: 123 TVCPKCWKFMVLAVKILDFQLEDMFDFKARMWVFSGRRGVHCWVGDKKARMLNNYQRSAI 182
Query: 183 AEYMSVLTAN---PVKKVFLTGDVLHPHLKRA-KLIIEDQ-FEKLLEEQELLSTKERQT- 236
A +++ N V + + P ++ A + ++D FEK++ +Q L ++ T
Sbjct: 183 ATRLNLFKKNGQCEVTEGRAKMTKVPPIVRDAFNVALKDGVFEKMIYDQGWLDKEDFITE 242
Query: 237 -KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN---SDRKLKYAIEE 292
K + V D+R+ E T E+W+ + + K+ D L + ++
Sbjct: 243 YKFMSEVGRDDLRSLSETYKT------PQERWNMIRGLFDDDYRKSLSPKDGLLDFKMQG 296
Query: 293 --------ILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
+L+ YPRLD++VS G NHLLKSPFC+HPKTG +
Sbjct: 297 RDRNYLLYFVLQRCYPRLDVNVSTGTNHLLKSPFCIHPKTGNVA 340
>sp|Q25998|PRI1_PLAFK DNA primase small subunit OS=Plasmodium falciparum (isolate K1 /
Thailand) PE=3 SV=1
Length = 452
Score = 224 bits (571), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 132/357 (36%), Positives = 199/357 (55%), Gaps = 45/357 (12%)
Query: 14 LPFYYKRIFPYGPYLRWLFYGN--------LDN---FRKREFSFTLNG------DIYARY 56
L FYY+ + P WL Y N L++ F KREFSFT +IY R+
Sbjct: 19 LIFYYRSLCPINDLYNWLNYKNDIKGKYTKLNDPHFFSKREFSFTCKKSDQGKEEIYIRW 78
Query: 57 ISYNSPNELKKDLIKR-CPQKIDLGAIYD--ICPKDHLQHSVFTPKMKELVFDIDMTDYD 113
+S+++P E K L+ P K D+GAIY+ + KD + +F P KEL+FDIDM DYD
Sbjct: 79 LSFSNPEEFKNKLLSDLVPIKFDIGAIYNFPVSQKDQ-KGDIFLPVQKELIFDIDMNDYD 137
Query: 114 DVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALA 173
D+R CC+ +C+ CW+++++A +LDTALREDF F+ +LWV+SGRRGIHCWV DE+
Sbjct: 138 DIRTCCTDKKVCKLCWKFLTVAIVLLDTALREDFSFEHILWVYSGRRGIHCWVADESCRY 197
Query: 174 LDGRGRSCLAEYMSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLST 231
R+ LA+Y+++L+ + KKV + G +P +RA I F+ L+EEQ+
Sbjct: 198 YTTDARAALADYLNILSGSDTKKKKVSIWGKDKYPMFERAFDICYKYFDVLMEEQDFF-- 255
Query: 232 KERQTKVLGLV-----SNGDIRAEIE-------KEWTRIGPGQDVEKWDRLVAIIKHHQA 279
K+ V L+ ++G + ++ KE+ E +++ +I
Sbjct: 256 KKGSPHVQKLIDYLPYASGKVTDPLKAMKLNELKEYINNNNFNSREIFEKFSSIYNFLTP 315
Query: 280 KNSDRKLKYA--------IEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
N ++ + ++EI+ YPRLDI+VSK +NHLLKSPFC+H TG++C
Sbjct: 316 SNYFKRKNVSGNINMPSFVKEIVFHFTYPRLDINVSKEINHLLKSPFCIHNSTGRVC 372
>sp|Q7KQM1|PRI1_PLAF7 DNA primase small subunit OS=Plasmodium falciparum (isolate 3D7)
GN=PF14_0366 PE=3 SV=1
Length = 452
Score = 224 bits (571), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 132/357 (36%), Positives = 199/357 (55%), Gaps = 45/357 (12%)
Query: 14 LPFYYKRIFPYGPYLRWLFYGN--------LDN---FRKREFSFTLNG------DIYARY 56
L FYY+ + P WL Y N L++ F KREFSFT +IY R+
Sbjct: 19 LIFYYRSLCPINDLYNWLNYKNDIKGKYTKLNDPHFFSKREFSFTCKKSDQGKEEIYIRW 78
Query: 57 ISYNSPNELKKDLIKR-CPQKIDLGAIYD--ICPKDHLQHSVFTPKMKELVFDIDMTDYD 113
+S+++P E K L+ P K D+GAIY+ + KD + +F P KEL+FDIDM DYD
Sbjct: 79 LSFSNPEEFKNKLLSDLVPIKFDIGAIYNFPVSQKDQ-KGDIFLPVQKELIFDIDMNDYD 137
Query: 114 DVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALA 173
D+R CC+ +C+ CW+++++A +LDTALREDF F+ +LWV+SGRRGIHCWV DE+
Sbjct: 138 DIRTCCTDKKVCKLCWKFLTVAIVLLDTALREDFSFEHILWVYSGRRGIHCWVADESCRY 197
Query: 174 LDGRGRSCLAEYMSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLST 231
R+ LA+Y+++L+ + KKV + G +P +RA I F+ L+EEQ+
Sbjct: 198 YTTDARAALADYLNILSGSDTKKKKVSIWGKDKYPMFERAFDICYKYFDVLMEEQDFF-- 255
Query: 232 KERQTKVLGLV-----SNGDIRAEIE-------KEWTRIGPGQDVEKWDRLVAIIKHHQA 279
K+ V L+ ++G + ++ KE+ E +++ +I
Sbjct: 256 KKGSPHVQKLIDYLPYASGKVTDPLKAMKLNELKEYINNNNFNSREIFEKFSSIYNFLTP 315
Query: 280 KNSDRKLKYA--------IEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
N ++ + ++EI+ YPRLDI+VSK +NHLLKSPFC+H TG++C
Sbjct: 316 SNYFKRKNVSGNINMPSFVKEIVFHFTYPRLDINVSKEINHLLKSPFCIHNSTGRVC 372
>sp|P10363|PRI1_YEAST DNA primase small subunit OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PRI1 PE=1 SV=2
Length = 409
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/325 (36%), Positives = 177/325 (54%), Gaps = 10/325 (3%)
Query: 14 LPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
+ +YYK ++P+ WL + + REF+ Y RY S+NS + K + K
Sbjct: 15 MEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIEK 74
Query: 72 RCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
P + ++GAIY+ P+ D L S KELVFDIDM DYD R CCSGA +C KCW
Sbjct: 75 ANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSGAQVCSKCW 134
Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
+++S+A KI +TALREDF ++ +WVFSGRRG HCWV D+ A AL R + +Y++V+
Sbjct: 135 KFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRNVLDYVNVI 194
Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTK-VLGLVSNGDI 247
K HPHL R+ ++ F +LEEQ + + +L + + +
Sbjct: 195 RDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLLPALYDKQL 254
Query: 248 RAEIEKEWTRIGPGQDVEKWDRL----VAIIKHHQAKNSDRKLKYAIEEILLELAYPRLD 303
++K W EKW+ + ++ K + + KL+ E+++L YP+LD
Sbjct: 255 IDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVLMTLYPKLD 314
Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
+ V+K HLLK+PFC+HP TG +C
Sbjct: 315 VEVTKQTIHLLKAPFCIHPATGNVC 339
>sp|B1YAF6|PRIS_PYRNV Probable DNA primase small subunit OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=priA PE=3 SV=1
Length = 312
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 14/193 (7%)
Query: 35 NLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKI-DLGAIYDICPKDHLQH 93
++D KREF+F G R+ ++ S EL++ +++ P+ + A Y+ + ++
Sbjct: 18 DVDAVEKREFAFQPFGGGMVRHKAFKSVEELRRFAVEKTPRHMYHSSAYYERPDEGDMER 77
Query: 94 SVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWR-YMSIACKILDTALREDFDFQLL 152
+ +L+FDID D+ D C + C A K+LD RE +
Sbjct: 78 KGWLGA--DLIFDID-GDHLDTEACRESKLVSIACLNDAREEANKLLDVLTRE-LGLKPR 133
Query: 153 LWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPV--------KKVFLTGDVL 204
VFSG RG H V DE LAL R R L Y+ +P +KV L + +
Sbjct: 134 RIVFSGNRGFHVHVADEEVLALGARERRELVNYLKAAGFDPTRFAAKLGRRKVLLYEEEV 193
Query: 205 HPHLKRAKLIIED 217
+L R + +ED
Sbjct: 194 EGNLLRIRQGVED 206
>sp|A3MUU9|PRIS_PYRCJ Probable DNA primase small subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=priA PE=3 SV=1
Length = 312
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 4/161 (2%)
Query: 36 LDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLG-AIYDICPKDHLQHS 94
+D KREF+F R+ ++ + ELK+ L+++ P+ + A Y+ ++ ++
Sbjct: 19 VDEVEKREFAFQPFVGGMVRHKAFKNLEELKRHLVEKTPRHVYYSTARYERPWEEDMERK 78
Query: 95 VFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLW 154
+ +LVFDID D+ D C + C L L E+ +
Sbjct: 79 GWLGA--DLVFDID-GDHLDTEACRESKVVSLACLEDAKEEANKLIDVLTEELGLKPTKV 135
Query: 155 VFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVK 195
VFSG RG H V DE LAL + R L Y+ + +P K
Sbjct: 136 VFSGNRGFHVHVVDEEVLALGQKERRELVNYLKAVGFDPSK 176
>sp|Q8ZTY1|PRIS_PYRAE Probable DNA primase small subunit OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=priA PE=3 SV=1
Length = 312
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 19/214 (8%)
Query: 32 FYGNLDNFR-----KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDIC 86
FY N F KREF+F R+ S+ S +L+K ++++ P+ I A Y
Sbjct: 10 FYRNFAKFEIDAVDKREFAFQPFSGGMVRHKSFKSLEDLRKFVVEKTPRHIYHSAAYYER 69
Query: 87 P-KDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWR-YMSIACKILDTALR 144
P ++ ++ + +L+FDID D+ D C + +C A K++D ++
Sbjct: 70 PGEEDMERKGWIGA--DLIFDID-GDHLDTEACRESKIVSLRCLEDAREEANKLIDVLIQ 126
Query: 145 EDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPV--------KK 196
E D + VFSG RG H V E + L R R L Y+ + +P +K
Sbjct: 127 E-LDLKPTRIVFSGNRGFHIHVSSEEVMKLGSRERRELVNYLKAVGFDPSRFIAKLGRRK 185
Query: 197 VFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLS 230
V L + +L R K +ED +E E+++
Sbjct: 186 VVLYEEEAVGNLLRIKQGVEDARAMKVEIDEVVT 219
>sp|A4WLS1|PRIS_PYRAR Probable DNA primase small subunit OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=priA PE=3 SV=1
Length = 312
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 11/171 (6%)
Query: 32 FYGNLDNF-----RKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKI-DLGAIYDI 85
FY N F +REF+F G R+ S+NS +EL++ ++++ P+ I A Y+
Sbjct: 10 FYRNYAKFDVVSVERREFAFQPFGGGMVRHKSFNSVDELRRYIVEKTPKHIYHSVAYYER 69
Query: 86 CPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWR-YMSIACKILDTALR 144
++ + + +LVFDID D+ + C A + +C K++D +R
Sbjct: 70 PGEEDMDRKGWLG--ADLVFDID-GDHLNTEACKGSAVVSLRCLEDAKEETNKLIDILVR 126
Query: 145 EDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVK 195
E D + VFSG RG H + E L L + R + ++ + +P +
Sbjct: 127 E-LDLRPTRIVFSGNRGFHIHITSEEVLKLGTKERREVVNFIKGVGFDPSR 176
>sp|A1RRN3|PRIS_PYRIL Probable DNA primase small subunit OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=priA PE=3 SV=1
Length = 312
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 4/162 (2%)
Query: 35 NLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKI-DLGAIYDICPKDHLQH 93
++D KREF+F R+ ++ + ELKK +I++ P+ I A Y+ ++ ++
Sbjct: 18 DIDAVEKREFAFQYFEGGIVRHRAFKTLEELKKFVIEKTPRHIYHSSAYYERPGEEDMER 77
Query: 94 SVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLL 153
+ +L+FDID D+ D C + C L L + +
Sbjct: 78 KGWLGA--DLIFDID-GDHLDTEACRESKLVSIACLNDAKEEANKLIDVLTGELGLKPRR 134
Query: 154 WVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVK 195
VFSG RG H V +E L L + R L Y+ + +P +
Sbjct: 135 VVFSGNRGFHIHVSEEEVLTLGAKERRELVNYLKAVGFDPSR 176
>sp|A5UJA2|PRIS_METS3 Probable DNA primase small subunit OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=priA PE=3 SV=1
Length = 324
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 118/299 (39%), Gaps = 33/299 (11%)
Query: 36 LDNFRKREFSFTLNG-DIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHS 94
L + +KREF F NG RY + LKK L + P + + P+
Sbjct: 28 LKDLKKREFGFDHNGKGPNDRYKVFRGSESLKKFLRYKAPFAAYISVAFYNNPRRREDW- 86
Query: 95 VFTPKMKELVFDIDMTDYDDVRNC-CSGADICEKCW-RYMSIACKILDTALREDFDFQLL 152
+ E +FD+D D +R+C C G +CE C + + I ++DT L++D +
Sbjct: 87 ----QKAEYIFDVDAKDI-PIRSCQCDG--VCEVCLGQALEIVNSLIDT-LQDDLGLNNI 138
Query: 153 LWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAK 212
V+SG RG H + DE + RS + +Y V A K F D+ +
Sbjct: 139 HLVYSG-RGYHIRILDEEMMTSGSELRSEVLKY--VAGAEVPKSNFFNPDISNKSFNFEH 195
Query: 213 LIIEDQFEKLLEEQELLSTKERQTKVLGLVSN---GDIRAEIEKEWTRIGPGQDVEKWDR 269
I + K+ T + + + LV N +I ++ K+ + D + W
Sbjct: 196 FSIPVGYSKIF-------TDKLKYNIQHLVGNEELDEINPKLMKDIIKYRHHLDNDNWGY 248
Query: 270 LVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
I + KN + E + + +D VS + +L+ P +H K C
Sbjct: 249 FKRDIGPRRYKN--------LTEAMARVNLSTIDAKVSIDLKRILRLPSSLHSKVSMKC 299
>sp|O29516|PRIS_ARCFU Probable DNA primase small subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=priA PE=3 SV=2
Length = 335
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 117/296 (39%), Gaps = 65/296 (21%)
Query: 39 FRKREFSFT----LNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICP-KDHLQH 93
F+ REF+F L + R+IS+ S + + ++ P I + Y P +D +++
Sbjct: 26 FKNREFAFVPLELLPDFVMHRHISFRSETDFRAYILSNVPAHIYFSSAYYERPAEDKMEN 85
Query: 94 SVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLL 153
+ +L+FDID D+ V+ A EK K L LR DF + +
Sbjct: 86 KGWLGA--DLIFDID-ADHLPVK-----AQSFEKALEMAKREIKKLTAVLRADFGIRDMK 137
Query: 154 WVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKL 213
FSG RG H V DE L+L R + +Y+ L K+
Sbjct: 138 IYFSGGRGYHVHVHDEEFLSLGSAERREIVDYL--------------------RLNSPKI 177
Query: 214 IIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAI 273
++ED+F + +VL +R ++E++ +RL +
Sbjct: 178 VVEDRF----------ANSNAAKRVLNY-----LRKKLEED-------------ERLTSK 209
Query: 274 IKHHQAKNSDRKLKYAIEEILLELAYPRLDIH----VSKGVNHLLKSPFCVHPKTG 325
+K A KL + + + Y L I+ V+ V L++ P +H KTG
Sbjct: 210 LKIKPADLKKEKLTKKVIRAVEKFDYSALSIYIDAPVTADVKRLIRLPGSLHGKTG 265
>sp|C6A5C2|PRIS_THESM Probable DNA primase small subunit OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=priA PE=3 SV=1
Length = 342
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 102 ELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRG 161
ELVFDID D R +C C K LREDF F+ + ++SGR G
Sbjct: 93 ELVFDIDAKDLPLKRCNHETGKVCPICLDDAKELTKDTLLILREDFGFENIHLIYSGR-G 151
Query: 162 IHCWVCDEAALALDGRGRSCLAEYMS 187
H V D+ AL LD + R + Y+S
Sbjct: 152 YHIRVLDDWALGLDSKAREKILSYIS 177
>sp|Q5JJ72|PRIS_PYRKO Probable DNA primase small subunit OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=priA PE=3
SV=1
Length = 346
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 102 ELVFDIDMTDYDDVRNCCS---GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSG 158
ELVFDID D +R C + +C C + L+EDF F+ + V+SG
Sbjct: 93 ELVFDIDAKDLP-LRRCQNEHPSGQVCPICLEDAKELARDTLIILKEDFGFENIHVVYSG 151
Query: 159 RRGIHCWVCDEAALALDGRGRSCLAEYMSV---LTANPVKKVFL 199
R G H V DE AL LD + R + Y+S +T + ++K ++
Sbjct: 152 R-GYHIRVIDEWALKLDSKARERILSYVSAAEEVTFDDIQKRYI 194
>sp|Q973F6|PRIS_SULTO Probable DNA primase small subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=priA PE=3
SV=2
Length = 318
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 26/169 (15%)
Query: 42 REFSFT-LNGDIYARYISYNSPNELKKDLIKRCPQKIDL-GAIYDICPKDHLQHSVFTPK 99
REF++ + + Y R++S++SP EL++ +++ P + A Y + + +
Sbjct: 31 REFAYQPFDSETYVRHLSFSSPQELRQYILQNVPLHLYYSSARYQLPSAKEMDEKGWL-- 88
Query: 100 MKELVFDIDMTD--------------YDDVRNCCSG------ADICEKCWRYMSIACKIL 139
+L+FD+D + Y+ + + C+G A+I +C + ++
Sbjct: 89 GSDLLFDLDADEICEVKVRRFCPQDGYETLASNCNGEPPIEYAEITTECIMKVFEKALLI 148
Query: 140 DTALREDFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYMS 187
L+EDF ++ FSG RG H V C E LD R +AEY +
Sbjct: 149 RDILKEDFGLNARIF-FSGNRGFHLRVTCYEDCALLDPDDRKEIAEYFT 196
>sp|Q2NI23|PRIS_METST Probable DNA primase small subunit OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=priA PE=3 SV=1
Length = 324
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 102 ELVFDIDMTDYDDVRNC-CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRR 160
ELVFD+D D +R C C+ ++CEKC ++ L DF + ++SG R
Sbjct: 93 ELVFDVDAKDIP-IRTCDCAEGEVCEKCLNQAKEIVLMIRDVLSGDFGLTNINLIYSG-R 150
Query: 161 GIHCWVCDEAALALDGRGRSCLAEYMS 187
G H V DE + R + +Y++
Sbjct: 151 GYHVRVLDEDVMDASSELRGDIIQYVT 177
>sp|Q3IP66|PRIS_NATPD Probable DNA primase small subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=priA PE=3 SV=1
Length = 393
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 99 KMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACK-----ILDTALREDFDFQLLL 153
+ +LVFD+D + G D E + M ACK +LD L EDF F+ L
Sbjct: 93 RGSDLVFDLDA-------DHLPGIDPSETSYAAMLEACKGALSRLLDL-LVEDFGFEPLA 144
Query: 154 WVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
VFSG RG H V + L LD R + EY+
Sbjct: 145 VVFSGGRGYHVHVRRDDVLELDRTARREIVEYV 177
>sp|Q18GR9|PRIS_HALWD Probable DNA primase small subunit OS=Haloquadratum walsbyi (strain
DSM 16790) GN=priA PE=3 SV=1
Length = 385
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 99 KMKELVFDIDMTDYDDVR-NCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFS 157
+ +L+FD+D V + S AD+ C + + +D +DF+F VFS
Sbjct: 90 QSADLIFDLDADHLPGVNPDTTSYADMLTACKTELQTLLEFID----DDFNFDETQVVFS 145
Query: 158 GRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTAN 192
G RG H V DE +LD R + +Y+ + N
Sbjct: 146 GGRGYHVHVRDEQVRSLDSAARREIVDYIRAIDLN 180
>sp|Q9YEZ8|PRIS_AERPE Probable DNA primase small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=priA PE=3 SV=2
Length = 342
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 26/133 (19%)
Query: 42 REFSFTL-NGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKM 100
REF+F L +GD+Y R+I ++S EL + + P+ A Y + ++S+ T +
Sbjct: 33 REFAFQLFDGDVYVRHIGFDSMEELLSYMAREAPKN----AYYSVA-----RYSLPTARS 83
Query: 101 --------KELVFDIDMTDYDDVRNCCSGADICEKCW-RYMSIACKILDTALREDFDFQL 151
EL+FDID+ D + C G + + C R A ++++ AL DF
Sbjct: 84 MEEKGWLGSELMFDIDV---DSLEGC--GEVLGDSCLSRGYKQAVRLVE-ALYRDFGVPS 137
Query: 152 LLWVFSGRRGIHC 164
L+ F+G RG H
Sbjct: 138 TLY-FTGNRGFHV 149
>sp|Q9V292|PRIS_PYRAB DNA primase small subunit OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=priA PE=3 SV=1
Length = 345
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 7/154 (4%)
Query: 36 LDNFRKREFSFTLNGDIYA-RYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHS 94
L N KREF F G+ + R SY +L+ + P A+Y
Sbjct: 29 LQNLDKREFGFDHTGEGPSDRKNSYTDVRDLEDYIKATAPY-----AVYSSVAFYEKPQE 83
Query: 95 VFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLW 154
+ ELVFDID D R +C C + L+E+ F+ +
Sbjct: 84 MEGWLGAELVFDIDAKDLPLRRCNHEPGKVCPICLNDAKEIARDTLIVLKEELGFEDVHV 143
Query: 155 VFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSV 188
V+SGR G H V D AL+LD + R + ++S
Sbjct: 144 VYSGR-GYHIRVMDGWALSLDSKSRERILSFISA 176
>sp|A0B688|PRIS_METTP Probable DNA primase small subunit OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=priA PE=3 SV=1
Length = 395
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 20/160 (12%)
Query: 55 RYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKE-------LVFDI 107
R+ S+ S EL + P + A Y + P P MKE L+FD+
Sbjct: 45 RHRSFRSRKELVDYIRSTVPAHVYHSAAYYLKPD--------APTMKEKIWKGADLIFDL 96
Query: 108 DMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALRE-DFDFQLLLWVFSGRRGIHCWV 166
D + R D E R K+L+ L + FD +++ FSG RG H V
Sbjct: 97 DADHLAEYRGSGI-RDFREMLERVKGETMKLLEFLLSDFGFDERMISVAFSGGRGYHIHV 155
Query: 167 CDEAALALDGRGRSCLAEYMSVLTANP---VKKVFLTGDV 203
D++ L L R + +Y++ +P + K+ + GD
Sbjct: 156 RDKSVLKLRSDARREIVDYLTGRGLDPERFIHKIGVDGDA 195
>sp|B6YV39|PRIS_THEON Probable DNA primase small subunit OS=Thermococcus onnurineus
(strain NA1) GN=priA PE=3 SV=1
Length = 346
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 102 ELVFDIDMTDYDDVRNCC---SGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSG 158
ELVFDID D +R C +C C + L+EDF F+ + V+SG
Sbjct: 93 ELVFDIDAKDLP-LRRCGHIHEHGKVCPICLGDAKELARDTLVILKEDFGFEDVHVVYSG 151
Query: 159 RRGIHCWVCDEAALALDGRGRSCLAEYMSV 188
R G H V D+ A+ LD + R + Y+S
Sbjct: 152 R-GYHIRVLDDWAIQLDSKSREKILAYISA 180
>sp|B9LPT9|PRIS_HALLT Probable DNA primase small subunit OS=Halorubrum lacusprofundi
(strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34)
GN=priA PE=3 SV=1
Length = 387
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 99 KMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACK-----ILDTALREDFDFQLLL 153
+ +LVFD+D + G D + M CK +LD L +DF F L
Sbjct: 91 RSADLVFDLDA-------DHLPGVDPDATSYPEMLAECKQALLRLLDF-LEDDFSFDDLT 142
Query: 154 WVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
VFSG RG H V DE+ LD R + +Y+ +
Sbjct: 143 VVFSGGRGYHVHVRDESVRELDSEARREVVDYVRAI 178
>sp|Q97Z83|PRIS_SULSO Probable DNA primase small subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=priA
PE=1 SV=1
Length = 330
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 29/171 (16%)
Query: 42 REFSFT-LNGDIYARYISYNSPNELKKDLIKR-CPQKIDL-GAIYDICPKDHLQHSVFTP 98
REF+ D Y R++S++S EL+ L+ R P + A Y + +++ +
Sbjct: 36 REFALQPFGSDTYVRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPSARNMEEKAWMG 95
Query: 99 KMKELVFDID---MTDYDDVRNC--CSGADICEKCWR-------YMSIACKILDTALRE- 145
+L+FDID + +R C C A + EKC R Y+ + + + L +
Sbjct: 96 --SDLLFDIDADHLCKLRSIRFCPVCGNAVVSEKCERDNVETLEYVEMTSECIKRGLEQT 153
Query: 146 ---------DFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYM 186
DF + ++ FSG RG H V C LD R +AEY+
Sbjct: 154 RNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGNCALLDSDERKEIAEYV 203
>sp|Q4J9B0|PRIS_SULAC Probable DNA primase small subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=priA PE=3 SV=1
Length = 322
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 21/170 (12%)
Query: 42 REFSFT-LNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAI-YDICPKDHLQHSVFTPK 99
REF++ N D Y R+++++S +EL+ ++ P + A Y I ++ +
Sbjct: 36 REFAYQPFNSDTYVRHLTFSSVDELRSFILSNVPLHLYFSAARYQIPSAKEMEQKGWLGS 95
Query: 100 MKELVFDIDMTDYDDVRNCCSGADI----CEKCWRYMS---IAC--KILDTALR------ 144
D D +VR CSG +I C+ R +S + C ++ + AL
Sbjct: 96 DLLFDLDADDICEINVRRFCSGMEILSETCDGEVREISEITVDCINRVFENALVLKDILI 155
Query: 145 EDFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYMSVLTANP 193
+DF + ++ FSG RG H V C LD R +AEY +++ +P
Sbjct: 156 QDFGLKPRIF-FSGNRGFHIRVDCYNEWANLDSEDRREIAEY--IMSPSP 202
>sp|C3NDP7|PRIS_SULIY Probable DNA primase small subunit OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=priA PE=3 SV=1
Length = 330
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 29/171 (16%)
Query: 42 REFSFT-LNGDIYARYISYNSPNELKKDLIKR-CPQKIDL-GAIYDICPKDHLQHSVFTP 98
REF+ D+Y R++S++S EL+ L+ R P + A Y + ++ +
Sbjct: 36 REFALQPFGSDMYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPSARDMEEKAWMG 95
Query: 99 KMKELVFDID---MTDYDDVRNC--CSGADICEKCWR-------YMSIACKILDTALRE- 145
+L+FDID + +R C C A EKC R Y+ + + + L E
Sbjct: 96 --SDLLFDIDADHICKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECIKRGLEEA 153
Query: 146 ---------DFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYM 186
DF + ++ FSG RG H V C LD R +AEY+
Sbjct: 154 RNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGDCALLDSDERKEIAEYV 203
>sp|C3NI04|PRIS_SULIN Probable DNA primase small subunit OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=priA PE=3 SV=1
Length = 330
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 29/171 (16%)
Query: 42 REFSFT-LNGDIYARYISYNSPNELKKDLIKR-CPQKIDL-GAIYDICPKDHLQHSVFTP 98
REF+ D Y R++S++S EL+ L+ R P + A Y + ++ +
Sbjct: 36 REFALQPFGSDTYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPSARDMEEKAWMG 95
Query: 99 KMKELVFDID---MTDYDDVRNC--CSGADICEKCWR-------YMSIACKILDTALRE- 145
+L+FDID + +R C C A EKC R Y+ + + + L E
Sbjct: 96 --SDLLFDIDADHICKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECIKRGLEEA 153
Query: 146 ---------DFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYM 186
DF + ++ FSG RG H V C LD R +AEY+
Sbjct: 154 RNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGDCALLDSDERKEIAEYV 203
>sp|C3MYF5|PRIS_SULIM Probable DNA primase small subunit OS=Sulfolobus islandicus (strain
M.14.25 / Kamchatka #1) GN=priA PE=3 SV=1
Length = 330
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 29/171 (16%)
Query: 42 REFSFT-LNGDIYARYISYNSPNELKKDLIKR-CPQKIDL-GAIYDICPKDHLQHSVFTP 98
REF+ D Y R++S++S EL+ L+ R P + A Y + ++ +
Sbjct: 36 REFALQPFGSDTYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPAARDMEEKAWMG 95
Query: 99 KMKELVFDID---MTDYDDVRNC--CSGADICEKCWR-------YMSIACKILDTALRE- 145
+L+FDID + +R C C A EKC R Y+ + + + L E
Sbjct: 96 --SDLLFDIDADHICKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECIKRGLEEA 153
Query: 146 ---------DFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYM 186
DF + ++ FSG RG H V C LD R +AEY+
Sbjct: 154 RNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGDCALLDSDERKEIAEYV 203
>sp|C3MPG7|PRIS_SULIL Probable DNA primase small subunit OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=priA PE=3 SV=1
Length = 330
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 29/171 (16%)
Query: 42 REFSFT-LNGDIYARYISYNSPNELKKDLIKR-CPQKIDL-GAIYDICPKDHLQHSVFTP 98
REF+ D Y R++S++S EL+ L+ R P + A Y + ++ +
Sbjct: 36 REFALQPFGSDTYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPSARDMEEKAWMG 95
Query: 99 KMKELVFDID---MTDYDDVRNC--CSGADICEKCWR-------YMSIACKILDTALRE- 145
+L+FDID + +R C C A EKC R Y+ + + + L E
Sbjct: 96 --SDLLFDIDADHICKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECIKRGLEEA 153
Query: 146 ---------DFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYM 186
DF + ++ FSG RG H V C LD R +AEY+
Sbjct: 154 RNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGDCALLDSDERKEIAEYV 203
>sp|C3N549|PRIS_SULIA Probable DNA primase small subunit OS=Sulfolobus islandicus (strain
M.16.27) GN=priA PE=3 SV=1
Length = 330
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 29/171 (16%)
Query: 42 REFSFT-LNGDIYARYISYNSPNELKKDLIKR-CPQKIDL-GAIYDICPKDHLQHSVFTP 98
REF+ D Y R++S++S EL+ L+ R P + A Y + ++ +
Sbjct: 36 REFALQPFGSDTYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPAARDMEEKAWMG 95
Query: 99 KMKELVFDID---MTDYDDVRNC--CSGADICEKCWR-------YMSIACKILDTALRE- 145
+L+FDID + +R C C A EKC R Y+ + + + L E
Sbjct: 96 --SDLLFDIDADHICKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECIKRGLEEA 153
Query: 146 ---------DFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYM 186
DF + ++ FSG RG H V C LD R +AEY+
Sbjct: 154 RNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGDCALLDSDERKEIAEYV 203
>sp|C4KGQ2|PRIS_SULIK Probable DNA primase small subunit OS=Sulfolobus islandicus (strain
M.16.4 / Kamchatka #3) GN=priA PE=3 SV=1
Length = 330
Score = 38.9 bits (89), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 29/171 (16%)
Query: 42 REFSFT-LNGDIYARYISYNSPNELKKDLIKR-CPQKIDL-GAIYDICPKDHLQHSVFTP 98
REF+ D Y R++S++S EL+ L+ R P + A Y + ++ +
Sbjct: 36 REFALQPFGSDTYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPGARDMEEKAWMG 95
Query: 99 KMKELVFDID---MTDYDDVRNC--CSGADICEKCWR-------YMSIACKILDTALRE- 145
+L+FDID + +R C C A EKC R Y+ + + + L E
Sbjct: 96 --SDLLFDIDADHICKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECIKRGLEEA 153
Query: 146 ---------DFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYM 186
DF + ++ FSG RG H V C LD R +AEY+
Sbjct: 154 RNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGDCALLDSDERKEIAEYV 203
>sp|Q12W69|PRIS_METBU Probable DNA primase small subunit OS=Methanococcoides burtonii
(strain DSM 6242) GN=priA PE=3 SV=1
Length = 390
Score = 38.9 bits (89), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 24/161 (14%)
Query: 52 IYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKE-------LV 104
+ R+ S+ S E++ L P + Y P P MKE L+
Sbjct: 45 VMRRHKSFGSAGEVEDYLTGMAPAHVYYSVAYYTYPN--------APTMKEKQWLAADLI 96
Query: 105 FDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQL--LLWVFSGRRGI 162
FD+D N S D+ + + K+ D L +DF F+ + VFSG RG
Sbjct: 97 FDLDADHIPGAPNSYS--DMLDHVKKE---TLKLYDL-LTDDFGFKEEDIGAVFSGGRGY 150
Query: 163 HCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDV 203
H + D L+L+ R + +Y+S N + K+F+ V
Sbjct: 151 HFHISDPRVLSLESAERREIVDYISGRGLN-LDKIFVKKGV 190
>sp|Q5V554|PRIS_HALMA Probable DNA primase small subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=priA PE=3 SV=1
Length = 392
Score = 38.1 bits (87), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 19/126 (15%)
Query: 77 IDLGAIYDICPKDHLQHSVFTP----------------KMKELVFDIDMTDYDDVRNCCS 120
+DLG I D + +H F+ + +LVFD+D D + +
Sbjct: 53 LDLGEIEDFLGRRKPRHVYFSAGRYDEPSASTMSDKGWRSSDLVFDLDA---DHLPSVVL 109
Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
G D + A + L L +DF F L VFSG RG H V DE L+ R
Sbjct: 110 GEDSYAEMLAKCKDALRRLLDFLEDDFGFDDLTIVFSGGRGYHVHVRDERIRHLERDARR 169
Query: 181 CLAEYM 186
+ +Y+
Sbjct: 170 EVVDYV 175
>sp|Q6L0W5|PRIS_PICTO Probable DNA primase small subunit OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=priA PE=3 SV=1
Length = 370
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 125/294 (42%), Gaps = 36/294 (12%)
Query: 41 KREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKD-HLQHSVFTPK 99
KRE + R++S+ + E++ + + P+ + + Y I P + ++ ++ +
Sbjct: 28 KREIGYIPFSGTMIRHLSFRNHREIESFVKRNTPRHLYYSSAYYIKPDEKRMEKKIW--E 85
Query: 100 MKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALRE-DFDFQLLLWVFSG 158
EL+FD+D D+ + + +I + +++S ++L+ + + FD + FSG
Sbjct: 86 GAELIFDLD-ADHIPGSDKMTYEEILLEVKKHVS---RLLNYLINDFGFDDDSIKLYFSG 141
Query: 159 RRGIHCWVCDEAALALDGRGRSCLAEY--MSVLTANPVKKVFLTGDVLHPHLKRAKLIIE 216
RG H V + +LD R + Y M T + + + P LKR I
Sbjct: 142 GRGYHVHVVSDRVYSLDSDARREIGNYIKMEDFTIDNIIRASREKPESGP-LKRFNEYIS 200
Query: 217 DQFEKLLEEQELLSTK-ERQTKVLGLVSNG----DIRAEIEKEWTRIGPGQDVEKWDRLV 271
+ + + + +R K L + +G DI E E +I +D++ + ++
Sbjct: 201 EIYSDENYLKRFYNGDFDRYYKSLDVYKDGKKKIDIMRENNYEKFKIVSKRDLDVLNNIL 260
Query: 272 AIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTG 325
+D K KY+ E +D V+ V+ L++ P +H KTG
Sbjct: 261 ----------NDFKDKYSAE----------IDEPVTTDVHRLIRFPGSLHGKTG 294
>sp|Q0W8M0|PRIS_UNCMA Probable DNA primase small subunit OS=Uncultured methanogenic
archaeon RC-I GN=priA PE=3 SV=1
Length = 400
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 62/159 (38%), Gaps = 25/159 (15%)
Query: 41 KREFSFTLN----GDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVF 96
+RE+ F + G R+ ++NS EL L P A Y P+
Sbjct: 30 QREWGFIFHEETVGVAMRRHKAFNSEGELADYLRSMPPAHAYHSAAYYRHPQ-------- 81
Query: 97 TPKMKE-------LVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDF 149
P M+E L+FD+D V+N G E +++D L +D F
Sbjct: 82 APTMQEKDWLGADLIFDLDADHLPGVKNMTYG----EMLDNVKVEIIRLIDEFLIDDLGF 137
Query: 150 QL--LLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
+ + VFSG RG H V DE L R + +Y+
Sbjct: 138 REKDMDIVFSGGRGYHVHVRDERVRTLKSPERREIVDYL 176
>sp|O26685|PRIS_METTH Probable DNA primase small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=priA PE=3 SV=1
Length = 323
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 61/155 (39%), Gaps = 15/155 (9%)
Query: 37 DNFRKREFSFTLNGDIYA-RYISYNSPNELKKDLIKRCPQKIDLGAIYDICP--KDHLQH 93
DN REF F NG + RY + L + + R P + P + Q
Sbjct: 32 DNLHMREFGFDHNGRGPSDRYRVFRDERSLARFMRVRYPFAAYSSVAFYREPWKRKGWQR 91
Query: 94 SVFTPKMKELVFDIDMTDYDDVRNC-CSGADICEKCWRYMSIACKILDTALREDFDFQLL 152
S EL+FD+D D VR+C C G +C C ++ L+ D +
Sbjct: 92 S-------ELIFDVDAKDL-PVRSCECDG--VCPTCLDEARELVLMMVDTLKGDLGLGDI 141
Query: 153 LWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMS 187
++SG RG H V D + L R+ + Y +
Sbjct: 142 HVIYSG-RGYHVRVLDPEVMELGSEVRAEILRYTA 175
>sp|Q8PVZ4|PRIS_METMA Probable DNA primase small subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=priA PE=3 SV=1
Length = 414
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 15/158 (9%)
Query: 37 DNFRKREFSFTLNGDI----YARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQ 92
D+ RE++F D+ R+ S+ SP E L P + Y P D +
Sbjct: 26 DHLPNREWAFIFYDDMPEKMMHRHKSFGSPGEALDYLYGMAPAHVYNSTAYYEYP-DARK 84
Query: 93 HSVFTPKMKELVFDIDMTDYDDV-RNCCSGADICEKCWRYMSIACKILDTALREDFDF-- 149
+ EL+FD+D + RN ++ +K K++D L +DF F
Sbjct: 85 MNEKNWLGAELIFDLDADHLPNAPRNYADMLELVKKE------TLKLMDFLL-DDFGFSE 137
Query: 150 QLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMS 187
Q + VFSG RG H + L L R + Y+S
Sbjct: 138 QDIELVFSGGRGYHFHITSPKVLTLGSSERREIVNYLS 175
>sp|Q58249|PRIS_METJA DNA primase OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=priA PE=1
SV=2
Length = 350
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 7/129 (5%)
Query: 42 REFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMK 101
REF + + R +S+ + E K ++K P Y + P S +
Sbjct: 33 REFGYGYLKKVDNRNLSFKNEREYKDWVLKNAPMHFYKSLAYMLYPNKSGGASKKGIFRR 92
Query: 102 ELVFDIDMTDYDDVRNCCSGAD-ICEKCWRYM-SIACKILDTALREDFDF--QLLLWVFS 157
EL FDID+ + C D IC+ C + A +++ L DF + L VFS
Sbjct: 93 ELAFDIDVHK---TKKCKHEDDWICKHCLEEAKNQAIYLIEEFLIPDFGLNEEDLKIVFS 149
Query: 158 GRRGIHCWV 166
G RG H ++
Sbjct: 150 GNRGYHIYI 158
>sp|A0RYW9|PRIS_CENSY Probable DNA primase small subunit OS=Cenarchaeum symbiosum (strain
A) GN=priA PE=3 SV=1
Length = 372
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 67/187 (35%), Gaps = 33/187 (17%)
Query: 37 DNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLG-AIYDICPKDHLQHSV 95
D +REF + G R++ +EL+ L++ P + IY L S
Sbjct: 28 DRAAQREFGYQRFGGGMVRHMRVKGSDELRLLLMQNSPSDVYCSNGIYSF---PELPMSD 84
Query: 96 FTPKMKELVFDIDMTDYD-------DVRNCCS-----GADICEKCW----RYMSIACK-- 137
K +L+FDID D R C S D C +C +S+ CK
Sbjct: 85 KDWKEADLIFDIDAKDLGLPCRKDHTFRRCSSCGRSHSGDGCPRCGPGAHDQISVLCKDC 144
Query: 138 ---------ILDTALREDFDF--QLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
L L ED ++ FSG G H + L R R LA+Y+
Sbjct: 145 IGGAKKEVEKLMHILEEDLGVGRDSVVVYFSGNEGFHVHIGGTQFQGLGSRERGELADYV 204
Query: 187 SVLTANP 193
+ A P
Sbjct: 205 RFVGAVP 211
>sp|Q46C74|PRIS_METBF Probable DNA primase small subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=priA PE=3 SV=1
Length = 414
Score = 35.0 bits (79), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 65/158 (41%), Gaps = 15/158 (9%)
Query: 37 DNFRKREFSF----TLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQ 92
D+ RE++F ++ + R+ ++ SP E L P + Y P D +
Sbjct: 26 DHLPNREWAFIFFDSMPDKMMHRHKAFGSPGEALDYLYGMAPAHVYNSTAYYEYP-DARK 84
Query: 93 HSVFTPKMKELVFDIDMTDYDDV-RNCCSGADICEKCWRYMSIACKILDTALREDFDF-- 149
+ EL+FD+D D +N ++ +K K++D L EDF F
Sbjct: 85 MNEKNWLGAELIFDLDADHLPDAPKNYADMLELVKKE------TFKLMDFLL-EDFGFSE 137
Query: 150 QLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMS 187
Q + VFSG RG H V L L R + Y+S
Sbjct: 138 QEIELVFSGGRGYHFHVRSPKVLKLGSAERREIVNYLS 175
>sp|Q9HPU3|PRIS_HALSA Probable DNA primase small subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=priA PE=3
SV=2
Length = 391
Score = 34.7 bits (78), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 69 LIKRCPQKIDLGA-IYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVR-NCCSGADICE 126
L ++CP+ + A YD + + + +LVFD+D V S A++
Sbjct: 62 LERKCPRHVYFSAGTYDAPGAATMDEKHW--QGSDLVFDLDADHLPRVTLGEDSYAEMLS 119
Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
KC + ++LD L DF F+ L FSG RG H V D L R + +Y+
Sbjct: 120 KCKDAL---LRLLDF-LERDFGFEELTVTFSGGRGYHVHVRDAGVYELGSEERREIVDYV 175
>sp|B0R5P1|PRIS_HALS3 Probable DNA primase small subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=priA PE=3 SV=1
Length = 391
Score = 34.7 bits (78), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 69 LIKRCPQKIDLGA-IYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVR-NCCSGADICE 126
L ++CP+ + A YD + + + +LVFD+D V S A++
Sbjct: 62 LERKCPRHVYFSAGTYDAPGAATMDEKHW--QGSDLVFDLDADHLPRVTLGEDSYAEMLS 119
Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
KC + ++LD L DF F+ L FSG RG H V D L R + +Y+
Sbjct: 120 KCKDAL---LRLLDF-LERDFGFEELTVTFSGGRGYHVHVRDAGVYELGSEERREIVDYV 175
>sp|Q8L7D5|THAH_ARATH Cytochrome P450 708A2 OS=Arabidopsis thaliana GN=CYP708A2 PE=2 SV=3
Length = 477
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 23/126 (18%)
Query: 3 DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGN-----------LDNFRKREFSFTLNGD 51
D ++P L E+ PF KR+ YGP R +G+ + FR+ SF
Sbjct: 50 DFFEPHGLYEISPFVKKRMLKYGPLFRTNIFGSNTVVLTEPDIIFEVFRQENKSF----- 104
Query: 52 IYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTD 111
+++ ++ P + +K G I+ + LQH K+++ +ID
Sbjct: 105 VFSYPEAFVKPFGKENVFLKH-------GNIHKHVKQISLQHLGSEALKKKMIGEIDRVT 157
Query: 112 YDDVRN 117
Y+ +R+
Sbjct: 158 YEHLRS 163
>sp|Q03748|CR1AE_BACTL Pesticidal crystal protein cry1Ae OS=Bacillus thuringiensis subsp.
alesti GN=cry1Ae PE=2 SV=1
Length = 1181
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 38 NFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFT 97
NF FTL+ ++ NS NE+ D I+ P ++ A YD+ +++FT
Sbjct: 576 NFSNGSSVFTLSAHVF------NSGNEVYIDRIEFVPAEVTFEAEYDLERAQEAVNALFT 629
Query: 98 PKMKELVFDIDMTDY--DDVRNC--CSGADIC 125
++ D+TDY D V N C + C
Sbjct: 630 SP-NQIGLKTDVTDYHIDQVSNLVECLSDEFC 660
>sp|Q9NJU9|CDPK3_PLAF7 Calcium-dependent protein kinase 3 OS=Plasmodium falciparum
(isolate 3D7) GN=CPK3 PE=1 SV=1
Length = 562
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 59 YNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDM 109
+N+ +E KDLIKRC + + A IC + LQH F K K+ F++DM
Sbjct: 339 WNNISEEAKDLIKRC---LTMDADKRICASEALQHPWF--KKKKYAFNMDM 384
>sp|Q54S04|RPB4_DICDI DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium
discoideum GN=polr2d PE=3 SV=1
Length = 155
Score = 31.6 bits (70), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 22 FPYGPYLRWLFYGNLDNFRKREFSFTLN-GDIYARYISYNSPNELKKDLIKRCPQKIDLG 80
FP L L+Y ++++ R F TL + ++RY + S +++ L K+ ++ ++
Sbjct: 55 FPQNTLLIHLYYNSINDII-RTFHKTLAYAEKFSRYKNKTSIKQVRTALSKQNLEEFEIA 113
Query: 81 AIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRN 117
++ ++CP+ + P +K++ D D++ N
Sbjct: 114 SLANLCPEISDEAKSLIPSLKKMEDDELQAILDELSN 150
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,202,773
Number of Sequences: 539616
Number of extensions: 5713191
Number of successful extensions: 14138
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 14071
Number of HSP's gapped (non-prelim): 62
length of query: 328
length of database: 191,569,459
effective HSP length: 118
effective length of query: 210
effective length of database: 127,894,771
effective search space: 26857901910
effective search space used: 26857901910
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)