Query psy13396
Match_columns 328
No_of_seqs 149 out of 389
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 18:23:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v33_A DNA primase small subun 100.0 5.1E-84 1.7E-88 631.4 10.8 289 8-328 25-325 (366)
2 1zt2_A DNA primase small subun 100.0 8.3E-65 2.8E-69 489.9 10.7 169 7-190 11-207 (330)
3 2fao_A Probable ATP-dependent 95.7 0.015 5.3E-07 55.5 6.4 52 101-168 133-185 (309)
4 2iru_A Putative DNA ligase-lik 95.6 0.019 6.6E-07 54.7 6.7 52 101-168 135-187 (303)
5 4cpa_I Metallocarboxypeptidase 60.3 0.45 1.5E-05 31.4 -2.9 15 119-133 18-32 (38)
6 2hly_A AGR_C_4178P, hypothetic 45.8 6.5 0.00022 35.3 1.1 53 122-178 29-105 (207)
7 1pzw_A Transcription factor gr 32.3 39 0.0013 24.3 3.4 22 122-143 49-70 (80)
8 3jyw_Q 60S ribosomal protein L 29.5 17 0.00057 29.9 1.0 23 301-328 42-64 (116)
9 1qz7_B Axin; beta-catenin, pro 26.9 10 0.00035 28.4 -0.6 22 302-327 39-60 (70)
10 1gvf_A Tagatose-bisphosphate a 26.4 7 0.00024 36.6 -2.0 26 300-325 187-212 (286)
11 3q94_A Fructose-bisphosphate a 24.6 7.5 0.00025 36.5 -2.2 26 300-325 191-216 (288)
12 3bb7_A Interpain A; cysteine p 24.3 51 0.0018 31.1 3.5 18 154-171 251-275 (321)
13 1w2l_A Cytochrome oxidase subu 23.5 52 0.0018 23.9 2.8 20 170-189 79-98 (99)
14 2zxy_A Cytochrome C552, cytoch 22.9 47 0.0016 23.3 2.4 19 171-189 68-86 (87)
15 1c53_A Cytochrome C553; electr 22.8 42 0.0014 23.8 2.1 19 170-188 60-78 (79)
16 1cch_A Cytochrome C551; electr 21.0 49 0.0017 23.2 2.1 17 173-189 65-81 (82)
No 1
>1v33_A DNA primase small subunit; nucleotidyl transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; 1.80A {Pyrococcus horikoshii} SCOP: d.264.1.1 PDB: 1v34_A* 1g71_A*
Probab=100.00 E-value=5.1e-84 Score=631.45 Aligned_cols=289 Identities=21% Similarity=0.260 Sum_probs=247.8
Q ss_pred hhhhhHHHHHhhhcCCccccccccccCCCCCCCCceeEEEe-cCCeeeccccCCCHHHHHHHHHHhCCCeeEEeeccCcC
Q psy13396 8 ESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTL-NGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDIC 86 (328)
Q Consensus 8 ~~~~~~~~~YY~~~fp~~~~~~WL~y~~~~~~~~REfaf~~-~~~~y~R~~sF~~~~el~~~l~~~~P~~i~igavy~~~ 86 (328)
+..++.|+.||+++||++.+++||+ .++++|||||++ .+++|+||+||+|.+||+++|++++|.++|+|+|||..
T Consensus 25 ~~~~~~l~~YY~r~fp~~~~~~wl~----~~~~~REfaf~~~~~~~~~R~~sF~~~~el~~~l~~~~P~~iy~saayy~~ 100 (366)
T 1v33_A 25 EVTREERKNFYTNEWKVKDIPDFIV----KTLELREFGFDHSGEGPSDRKNQYTDIRDLEDYIRATAPYAVYSSVALYEK 100 (366)
T ss_dssp CCCHHHHHHHHHHTCCGGGSCHHHH----TTGGGCCEEEESSSSCSCEEEECCSSHHHHHHHHHHHCCSEEEEESEEEEE
T ss_pred cCCHHHHHHHHHhhCCccccccccc----ccCcCeEEEEEECCCCccccccccCCHHHHHHHHHHhCCCEEEEcceeecC
Confidence 3457789999999999999999994 479999999997 57789999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccceEEeecCCCCCCcccc-CCcchhhHHHHHHHHHHHHHHHHHHhhhcCCceeEEEEeCCCeeEEE
Q psy13396 87 PKDHLQHSVFTPKMKELVFDIDMTDYDDVRNC-CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCW 165 (328)
Q Consensus 87 P~~~~~kg~~~p~grELVFDID~~dyd~vr~C-c~~~~iC~kCw~~~~~a~klld~~L~~dFGf~~i~~vFSG~RG~H~w 165 (328)
|.+ .++| .||||||||||||| ++|+| |+++.||.+||++|++|+++|+.+|++||||++++||||| ||||||
T Consensus 101 P~~--~k~~---~~~ELVFDID~~d~-diRtC~C~~~~iC~kC~~~~~~a~~~l~~~L~~dFGf~~i~~vfSG-RG~Hvw 173 (366)
T 1v33_A 101 PQE--MEGW---LGTELVFDIDAKDL-PLRRCEHEPGTVCPICLNDAKEIVRDTVIILREELGFNDIHIIYSG-RGYHIR 173 (366)
T ss_dssp TTT--TEEE---EEECEEEEEEGGGC-SSCSSCSCTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEECS-SEEEEE
T ss_pred hhh--cCCc---cccceEEEecCCcC-CcCccCCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEEEEeC-CeEEEE
Confidence 988 4677 48999999999999 59999 9999999999999999999999999999999999999999 999999
Q ss_pred EechhhhcCChHHHHHHHhhhhhccCCc---ceeeeecCCCCCchHH----HHHHHHHHHHHHHhhhcccCC---CHHHH
Q psy13396 166 VCDEAALALDGRGRSCLAEYMSVLTANP---VKKVFLTGDVLHPHLK----RAKLIIEDQFEKLLEEQELLS---TKERQ 235 (328)
Q Consensus 166 V~D~~a~~l~~~~R~~Iv~Yl~~~~~~~---~k~v~~~~~~~hp~~~----ra~~il~~~f~~~l~~q~~l~---~~~~~ 235 (328)
|||+.|+.|++++|++||+||++.+.+. .++|+ ..++.||.+. |++.++.++|...+.+|+.+. +++.+
T Consensus 174 V~D~~ar~l~~~~R~~IvdYl~~~~~~~~~~~~~v~-~~~~~h~~~~~~~~r~~~~~~~~f~~~~~~~~~l~~g~~~~~~ 252 (366)
T 1v33_A 174 VLDEWALKLDSKSRERILSFVSASEIEDVEEFRKLL-LNKRGWFVLNHGYPRAFRLRFGYFILRIKLPHLINAGIRKSIA 252 (366)
T ss_dssp ECCHHHHTCCHHHHHHHHHHHTTCSSCCHHHHHHHH-HHCGGGGGCSSSHHHHHHHHHHHHHTTCCHHHHHHTTCCHHHH
T ss_pred EecHHhhhcCHHHHHHHhhhEEeeccCCccccceee-ccCCCCcccchhHHHHHHHHHHHHHHHhhhhhhhhccCCHHHH
Confidence 9999999999999999999999987533 35677 4667888866 889999999988744555654 78888
Q ss_pred HHHHhccCChHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHhhcccCcCcccCCCcccc
Q psy13396 236 TKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLK 315 (328)
Q Consensus 236 ~~lL~~ipd~~~~~~l~~~~~~~~~~~s~~~w~~l~~~~~~~~~~~~~~~~~~~~~eiv~~~~yPRlD~~VSk~~nHLLK 315 (328)
+++|+.. .++.+ +.++.++|..+++... .+.+.. +.+++++++|||||+|||+|+|||||
T Consensus 253 ~~~l~~~------~~~~~------~~~s~~~w~~~~~~~~-------~~~~~~-l~~~v~~~~~~~lD~~VT~d~nhLLK 312 (366)
T 1v33_A 253 KSILKSK------EEIYE------EFVRKAILAAFPQGVG-------IESLAK-LFALSTRFSKSYFDGRVTVDLKRILR 312 (366)
T ss_dssp HHHHHTH------HHHHH------HTTTTCCGGGSCTTCH-------HHHHHH-HHHHHHHHHHTSSCHHHHHCTTCEEE
T ss_pred HHHHHHH------HHhhh------cccchhhHHHHhhhhh-------hhHHHH-HHHHHHHhhhcccCcccccCcceeee
Confidence 8888732 12222 1347888987753111 112333 45899999999999999999999999
Q ss_pred CCCcccCCCCCCC
Q psy13396 316 SPFCVHPKTGKIC 328 (328)
Q Consensus 316 sPFcvHpkTGrVc 328 (328)
+|||||||||+||
T Consensus 313 ~PfslHpkTG~vc 325 (366)
T 1v33_A 313 LPSTLHSKVGLIA 325 (366)
T ss_dssp CTTSEETTTTEEC
T ss_pred cCccccCCCCcEE
Confidence 9999999999998
No 2
>1zt2_A DNA primase small subunit; heterodimeric complex, replication, transferase; HET: DNA; 3.33A {Sulfolobus solfataricus} SCOP: d.264.1.1
Probab=100.00 E-value=8.3e-65 Score=489.93 Aligned_cols=169 Identities=24% Similarity=0.396 Sum_probs=151.6
Q ss_pred chhhhhHHHHHhhhcCCccccccccccCCCCCCCCceeEEE-ecCCeeeccccCCCHHHHHHHHHH-hCCCeeEEeeccC
Q psy13396 7 PESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFT-LNGDIYARYISYNSPNELKKDLIK-RCPQKIDLGAIYD 84 (328)
Q Consensus 7 ~~~~~~~~~~YY~~~fp~~~~~~WL~y~~~~~~~~REfaf~-~~~~~y~R~~sF~~~~el~~~l~~-~~P~~i~igavy~ 84 (328)
..+++++|+.||++ +|.. .|.++++|||||+ +.+++|+||+||+|.+||+++|++ ++|.|+|+|++||
T Consensus 11 ~~~l~~~~~~YY~~-~~~~---------~~~~~~~REfaf~~~~~~~~~R~~sF~~~~el~~~l~~~~~P~~v~~s~a~Y 80 (330)
T 1zt2_A 11 TNLIKSFFRNYYLN-AELE---------LPKDMELREFALQPFGSDTYVRHLSFSSSEELRDYLVNRNLPLHLFYSSARY 80 (330)
T ss_dssp CCHHHHHHHHHHHH-CCCC---------CCTTGGGSCEEEEETTCSSCCCCBCCSSHHHHHHHHHTTCCEEEEEEESBCC
T ss_pred HHHHHHHHHHHHhc-CCCC---------CCCcccceEEEEEEcCCCeeeeecccCCHHHHHHHHHhccCCceEEecccee
Confidence 46799999999999 7864 4899999999996 567789999999999999999999 9999999996666
Q ss_pred cCccccc--CCCCCCCCccceEEeecCCCCC---CccccCCcc-----hhhH--------------HHHHHHH-HHHHHH
Q psy13396 85 ICPKDHL--QHSVFTPKMKELVFDIDMTDYD---DVRNCCSGA-----DICE--------------KCWRYMS-IACKIL 139 (328)
Q Consensus 85 ~~P~~~~--~kg~~~p~grELVFDID~~dyd---~vr~Cc~~~-----~iC~--------------kCw~~~~-~a~kll 139 (328)
..|+++. +||| +|||||||||||||| ++|+||+++ ++|+ .||.+++ +|++|+
T Consensus 81 ~~P~~~~m~~k~~---~~rELVFDID~~d~d~~~~~r~C~~~~~~~~~~~C~kC~~~~~~~~~ic~~cl~~~k~~a~kll 157 (330)
T 1zt2_A 81 QLPSARNMEEKAW---MGSDLLFDIDADHLCKLRSIRFCPVCGNAVVSEKCERDNVETLEYVEMTSECIKRGLEQTRNLV 157 (330)
T ss_dssp SCTTCSSHHHHCC---CCBCEEEEBCHHHHHCCEEEEECTTTCCBCSSSEETTTTEECEEEEECCHHHHHHHHHHHHHHH
T ss_pred cCcccccccccCc---CceeeEEEecCCcCcccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHH
Confidence 6698855 7887 699999999999999 899999876 4555 5577887 699999
Q ss_pred HHHHhhhcCCceeEEEEeCCCeeEEEEe-chhhhcCChHHHHHHHhhhhhcc
Q psy13396 140 DTALREDFDFQLLLWVFSGRRGIHCWVC-DEAALALDGRGRSCLAEYMSVLT 190 (328)
Q Consensus 140 d~~L~~dFGf~~i~~vFSG~RG~H~wV~-D~~a~~l~~~~R~~Iv~Yl~~~~ 190 (328)
| +|++||||++ +|||||||||||||+ |++|+.|++++|++||+|+++++
T Consensus 158 d-~L~~dFGf~~-~ivFSG~RG~H~wV~~D~~a~~l~~~~R~~Iv~Y~~~~~ 207 (330)
T 1zt2_A 158 E-ILEDDFGLKP-KVYFSGNRGFHVQVDCYGNCALLDSDERKEIAEYVMGIG 207 (330)
T ss_dssp H-HHHHTTCCCC-EEEECSSSSEEEEECCCSGGGGCCHHHHHHHHHHHTTSS
T ss_pred H-HHHHHcCCCe-eEEEeCCCceEEEEeCCHHHhhcCHHHHHHHHHHHHhcc
Confidence 9 9999999999 999999999999998 99999999999999999999865
No 3
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A*
Probab=95.69 E-value=0.015 Score=55.52 Aligned_cols=52 Identities=25% Similarity=0.422 Sum_probs=38.1
Q ss_pred cceEEeecCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHHhhhcCCceeEEEEeCCCeeEEEE-ec
Q psy13396 101 KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWV-CD 168 (328)
Q Consensus 101 rELVFDID~~dyd~vr~Cc~~~~iC~kCw~~~~~a~klld~~L~~dFGf~~i~~vFSG~RG~H~wV-~D 168 (328)
-+||||+|-..-.+ |..+.+|..++...| +++|.... ..-||++|+||.| ..
T Consensus 133 D~lvfDLDP~~~~~--------------f~~v~~aA~~~r~~L-~~lGL~~f-~KTSGgkGlHV~vPl~ 185 (309)
T 2fao_A 133 DRFVLDLDPDPALP--------------WKRMLEATQLSLTLL-DELGLRAF-LKTSGGKGMHLLVPLE 185 (309)
T ss_dssp SEEEEEEEECTTSC--------------HHHHHHHHHHHHHHH-HHHTCCCE-EEECSSSSEEEEEECC
T ss_pred CEEEEECCCCcCCC--------------HHHHHHHHHHHHHHH-HHcCCcee-eEccCCCeeEEEEEcC
Confidence 58999999985322 344556777776455 67799774 4679999999999 44
No 4
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Probab=95.60 E-value=0.019 Score=54.71 Aligned_cols=52 Identities=25% Similarity=0.365 Sum_probs=38.5
Q ss_pred cceEEeecCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHHhhhcCCceeEEEEeCCCeeEEEE-ec
Q psy13396 101 KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWV-CD 168 (328)
Q Consensus 101 rELVFDID~~dyd~vr~Cc~~~~iC~kCw~~~~~a~klld~~L~~dFGf~~i~~vFSG~RG~H~wV-~D 168 (328)
-+||||+|-..-.+ |.-+.+|..++...| +++|.... ..-||+||+|++| ..
T Consensus 135 D~lvfDLDP~~~~~--------------f~~v~~aA~~~r~~L-~~lGL~~f-~KTSGgkGlHV~vPl~ 187 (303)
T 2iru_A 135 TRLVFDLDPGEGVM--------------MAQLAEVARAVRDLL-ADIGLVTF-PVTSGSKGLHLYTPLD 187 (303)
T ss_dssp EEEEEEEEECTTCC--------------HHHHHHHHHHHHHHH-HTTTCCCE-EEECSSSCEEEEEEEE
T ss_pred CEEEEECCCCCCCC--------------HHHHHHHHHHHHHHH-HHcCCccc-eEccCCCeEEEEEEcC
Confidence 58999999976432 334556777776455 57799875 4789999999999 44
No 5
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=60.30 E-value=0.45 Score=31.38 Aligned_cols=15 Identities=47% Similarity=1.210 Sum_probs=12.8
Q ss_pred CCcchhhHHHHHHHH
Q psy13396 119 CSGADICEKCWRYMS 133 (328)
Q Consensus 119 c~~~~iC~kCw~~~~ 133 (328)
|++++.|..||.+.+
T Consensus 18 CS~gw~CqaC~nfa~ 32 (38)
T 4cpa_I 18 CSGAWFCQACWNSAR 32 (38)
T ss_dssp SCCCSSCCEEETTTT
T ss_pred cccchHHHHHHhhcc
Confidence 789999999998753
No 6
>2hly_A AGR_C_4178P, hypothetical protein ATU2299; ATC2257, MCSG, structural genomics, PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} SCOP: d.3.1.19
Probab=45.76 E-value=6.5 Score=35.26 Aligned_cols=53 Identities=19% Similarity=0.396 Sum_probs=32.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhcCCceeE------------EEEeC-----------CCeeEEEE-echhhhcCChH
Q psy13396 122 ADICEKCWRYMSIACKILDTALREDFDFQLLL------------WVFSG-----------RRGIHCWV-CDEAALALDGR 177 (328)
Q Consensus 122 ~~iC~kCw~~~~~a~klld~~L~~dFGf~~i~------------~vFSG-----------~RG~H~wV-~D~~a~~l~~~ 177 (328)
++.-.-||-|....+.|| ++.++.|..- +.+=| +-|||||| ||..+...=.-
T Consensus 29 Ad~~~Ac~fFs~~Ga~IL----~~hY~i~A~~~~G~aay~l~~~vl~Fg~~~edg~v~~~~d~FH~WVe~Dg~~IDFMAP 104 (207)
T 2hly_A 29 ADPASASMYFSTFGAFIL----QQHYKVKAVPKGGLAAYNLGGTVLLFADHREDGYVTGAGENFHCWVEADGWAIDFMAP 104 (207)
T ss_dssp CCHHHHHHHHHHHHHHHH----HHHHCCCEEEEEEEEEEEETTEEEEESBCCC--CBCCSSTTCEEEEEETTEEEETTGG
T ss_pred CChhHHHHHHHHHHHHHH----HHHhcccceeccchhhhccCCceEEEeecccCCEEecCCCceEEEEEECCEEeeeecc
Confidence 455567999888777655 4666554211 11223 36999999 89877654433
Q ss_pred H
Q psy13396 178 G 178 (328)
Q Consensus 178 ~ 178 (328)
.
T Consensus 105 ~ 105 (207)
T 2hly_A 105 A 105 (207)
T ss_dssp G
T ss_pred c
Confidence 3
No 7
>1pzw_A Transcription factor grauzone; dimerization, transcription regulation, treble-CLEF zinc FIN transcription; 2.00A {Drosophila melanogaster} SCOP: g.39.1.10
Probab=32.29 E-value=39 Score=24.28 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=16.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q psy13396 122 ADICEKCWRYMSIACKILDTAL 143 (328)
Q Consensus 122 ~~iC~kCw~~~~~a~klld~~L 143 (328)
..||..||..+..+.+.-....
T Consensus 49 ~~IC~~C~~~l~~~~~Fr~~c~ 70 (80)
T 1pzw_A 49 KVICNVCWTQVSEFHQFYVSIQ 70 (80)
T ss_dssp SEEEHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 6899999999888766555433
No 8
>3jyw_Q 60S ribosomal protein L21(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_Q
Probab=29.51 E-value=17 Score=29.92 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=16.7
Q ss_pred ccCcCcccCCCccccCCCcccCCCCCCC
Q psy13396 301 RLDIHVSKGVNHLLKSPFCVHPKTGKIC 328 (328)
Q Consensus 301 RlD~~VSk~~nHLLKsPFcvHpkTGrVc 328 (328)
..|--|-|+|=| =|-|++||+|+
T Consensus 42 k~~gsVqKGmPH-----k~YHGKTGrV~ 64 (116)
T 3jyw_Q 42 KANGSIQKGMPH-----KFYQGKTGVVY 64 (116)
T ss_dssp CCCSSSCTTCCC-----STTSSCCCBCC
T ss_pred eccCccCCCCCC-----cccCCCCeEEE
Confidence 445566777655 38999999985
No 9
>1qz7_B Axin; beta-catenin, protein-protein complex, cell adhesion; 2.20A {Xenopus laevis}
Probab=26.94 E-value=10 Score=28.39 Aligned_cols=22 Identities=45% Similarity=0.815 Sum_probs=17.7
Q ss_pred cCcCcccCCCccccCCCcccCCCCCC
Q psy13396 302 LDIHVSKGVNHLLKSPFCVHPKTGKI 327 (328)
Q Consensus 302 lD~~VSk~~nHLLKsPFcvHpkTGrV 327 (328)
||+.|| +.+|.|+|-=|+.||.
T Consensus 39 LDeHvs----RV~ktPGcqSPG~gr~ 60 (70)
T 1qz7_B 39 LDEHVQ----RVMKTPGCQSPGTGRH 60 (70)
T ss_pred HHHHHH----HHHhCcCCCCCCCCCC
Confidence 566665 6889999999999975
No 10
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=26.42 E-value=7 Score=36.64 Aligned_cols=26 Identities=15% Similarity=0.496 Sum_probs=19.9
Q ss_pred cccCcCcccCCCccccCCCcccCCCC
Q psy13396 300 PRLDIHVSKGVNHLLKSPFCVHPKTG 325 (328)
Q Consensus 300 PRlD~~VSk~~nHLLKsPFcvHpkTG 325 (328)
|+||.+.-+.++..+..|+.+|++||
T Consensus 187 p~Ld~~~L~~I~~~~~vpLVlHGgSG 212 (286)
T 1gvf_A 187 PKIDFQRLAEIREVVDVPLVLHGASD 212 (286)
T ss_dssp CCCCHHHHHHHHHHCCSCEEECCCTT
T ss_pred CccCHHHHHHHHHhcCCCEEEECCCC
Confidence 56666666666666679999999999
No 11
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=24.56 E-value=7.5 Score=36.52 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=20.4
Q ss_pred cccCcCcccCCCccccCCCcccCCCC
Q psy13396 300 PRLDIHVSKGVNHLLKSPFCVHPKTG 325 (328)
Q Consensus 300 PRlD~~VSk~~nHLLKsPFcvHpkTG 325 (328)
|+||-+.-+.++-.+..|+.+|++||
T Consensus 191 p~Ld~~~L~~I~~~v~vpLVlHGgSG 216 (288)
T 3q94_A 191 PNLGFAEMEQVRDFTGVPLVLHGGTG 216 (288)
T ss_dssp CCCCHHHHHHHHHHHCSCEEECCCTT
T ss_pred CccCHHHHHHHHHhcCCCEEEeCCCC
Confidence 56666666666666688999999999
No 12
>3bb7_A Interpain A; cysteine protease, zymogen activation, bacterial odontopatho hydrolase; 1.50A {Prevotella intermedia} PDB: 3bba_A
Probab=24.33 E-value=51 Score=31.12 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=13.3
Q ss_pred EEEeCC-------CeeEEEEechhh
Q psy13396 154 WVFSGR-------RGIHCWVCDEAA 171 (328)
Q Consensus 154 ~vFSG~-------RG~H~wV~D~~a 171 (328)
++++|. .|=|+||||.-.
T Consensus 251 V~~~G~~~~~~~~~~GHafV~DGY~ 275 (321)
T 3bb7_A 251 LIYGGVSPGSMGQDAGHAFVIDGYN 275 (321)
T ss_dssp EEEEEC-------CCCEEEEEEEEC
T ss_pred EEEEEecCCCCCCCCceEEEEcccc
Confidence 567753 578999999753
No 13
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=23.47 E-value=52 Score=23.90 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=16.6
Q ss_pred hhhcCChHHHHHHHhhhhhc
Q psy13396 170 AALALDGRGRSCLAEYMSVL 189 (328)
Q Consensus 170 ~a~~l~~~~R~~Iv~Yl~~~ 189 (328)
.+..|+++++.+|+.||...
T Consensus 79 ~~~~ls~~ei~~l~~yl~sl 98 (99)
T 1w2l_A 79 SYASLSEREVAALIEFIKQQ 98 (99)
T ss_dssp GGGGCCHHHHHHHHHHHHTC
T ss_pred ccccCCHHHHHHHHHHHHHc
Confidence 34579999999999999753
No 14
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=22.94 E-value=47 Score=23.35 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=16.3
Q ss_pred hhcCChHHHHHHHhhhhhc
Q psy13396 171 ALALDGRGRSCLAEYMSVL 189 (328)
Q Consensus 171 a~~l~~~~R~~Iv~Yl~~~ 189 (328)
+..|++++..+|+.||...
T Consensus 68 ~~~ls~~ei~~l~~yl~sl 86 (87)
T 2zxy_A 68 LKGLSDAELKALADFILSH 86 (87)
T ss_dssp GGGCCHHHHHHHHHHHHTC
T ss_pred ccCCCHHHHHHHHHHHHhc
Confidence 4589999999999999753
No 15
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=22.81 E-value=42 Score=23.77 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=16.2
Q ss_pred hhhcCChHHHHHHHhhhhh
Q psy13396 170 AALALDGRGRSCLAEYMSV 188 (328)
Q Consensus 170 ~a~~l~~~~R~~Iv~Yl~~ 188 (328)
.+..||++++.+|+.||..
T Consensus 60 ~~~~Ls~~ei~~l~~Yl~s 78 (79)
T 1c53_A 60 LVKRYSDEEMKAMADYMSK 78 (79)
T ss_pred HHhhCCHHHHHHHHHHHHh
Confidence 4567999999999999963
No 16
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=21.01 E-value=49 Score=23.19 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=15.1
Q ss_pred cCChHHHHHHHhhhhhc
Q psy13396 173 ALDGRGRSCLAEYMSVL 189 (328)
Q Consensus 173 ~l~~~~R~~Iv~Yl~~~ 189 (328)
.|+++++.+|+.||...
T Consensus 65 ~ls~~ei~~l~~yl~~l 81 (82)
T 1cch_A 65 PVTEEEAKILAEWVLSL 81 (82)
T ss_dssp SCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 69999999999999753
Done!