Your job contains 1 sequence.
>psy13396
MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYN
SPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCS
GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS
CLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLG
LVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYP
RLDIHVSKGVNHLLKSPFCVHPKTGKIC
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13396
(328 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-990603-6 - symbol:prim1 "primase polypeptid... 811 8.5e-81 1
FB|FBgn0011762 - symbol:DNApol-alpha50 "DNA polymerase al... 768 3.1e-76 1
UNIPROTKB|G8JKZ3 - symbol:PRIM1 "DNA primase" species:991... 768 3.1e-76 1
UNIPROTKB|P49642 - symbol:PRIM1 "DNA primase small subuni... 756 5.7e-75 1
MGI|MGI:97757 - symbol:Prim1 "DNA primase, p49 subunit" s... 753 1.2e-74 1
UNIPROTKB|I3LGL1 - symbol:LOC100622817 "DNA primase" spec... 748 4.0e-74 1
UNIPROTKB|F8VNY2 - symbol:PRIM1 "DNA primase" species:960... 730 3.2e-72 1
UNIPROTKB|F1LQA1 - symbol:Prim1 "DNA primase" species:101... 722 2.3e-71 1
POMBASE|SPAC6B12.10c - symbol:spp1 "DNA primase catalytic... 699 6.3e-69 1
CGD|CAL0004759 - symbol:orf19.4030 species:5476 "Candida ... 638 1.8e-62 1
ASPGD|ASPL0000041026 - symbol:AN3033 species:162425 "Emer... 629 1.6e-61 1
WB|WBGene00004180 - symbol:pri-1 species:6239 "Caenorhabd... 570 2.9e-55 1
SGD|S000001447 - symbol:PRI1 "Subunit of DNA primase" spe... 536 1.2e-51 1
WB|WBGene00020761 - symbol:T24C4.5 species:6239 "Caenorha... 466 3.1e-44 1
UNIPROTKB|F1LNK6 - symbol:Prim1 "DNA primase" species:101... 420 2.3e-39 1
UNIPROTKB|F8VSB2 - symbol:PRIM1 "DNA primase small subuni... 416 6.1e-39 1
RGD|621380 - symbol:Prim1 "DNA primase, p49 subunit" spec... 413 1.3e-38 1
UNIPROTKB|F1PDB3 - symbol:PRIM1 "Uncharacterized protein"... 410 2.6e-38 1
DICTYBASE|DDB_G0285853 - symbol:polA4 "DNA primase small ... 409 3.4e-38 1
UNIPROTKB|H0YIP2 - symbol:PRIM1 "DNA primase small subuni... 170 1.9e-12 1
UNIPROTKB|F1SL96 - symbol:F1SL96 "Uncharacterized protein... 166 5.2e-12 1
>ZFIN|ZDB-GENE-990603-6 [details] [associations]
symbol:prim1 "primase polypeptide 1" species:7955
"Danio rerio" [GO:0003896 "DNA primase activity" evidence=IEA]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=IEA] [GO:0030894 "replisome" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896
ZFIN:ZDB-GENE-990603-6 GO:GO:0003896 GO:GO:0030894 KO:K02684
PANTHER:PTHR10536 TIGRFAMs:TIGR00335 CTD:5557 HOVERGEN:HBG003006
EMBL:BC047856 IPI:IPI00914406 RefSeq:NP_958856.1 UniGene:Dr.160075
ProteinModelPortal:Q7ZUR8 STRING:Q7ZUR8 GeneID:30440 KEGG:dre:30440
NextBio:20806838 ArrayExpress:Q7ZUR8 Uniprot:Q7ZUR8
Length = 425
Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
Identities = 161/330 (48%), Positives = 217/330 (65%)
Query: 5 YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
YD L ++LP YY+R+FP+ Y RWL YG + F+ REFSFTL DIY RY S++S
Sbjct: 6 YDSACLPDLLPLYYRRLFPFSQYFRWLSYGGVSKNYFQNREFSFTLKDDIYVRYQSFSSQ 65
Query: 63 NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
NEL+K++ K P KID+GA+Y P H ++ F KELVFDIDMTDYDDVR CCS
Sbjct: 66 NELEKEMQKMVPYKIDIGAVYSHRPSQHNTVKSGTFQALEKELVFDIDMTDYDDVRRCCS 125
Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
ADIC KCW M+IA +ILD ALREDF F LLWV+SGRRG+HCWVCD+AA L RS
Sbjct: 126 AADICSKCWTLMTIAIRILDRALREDFGFHHLLWVYSGRRGVHCWVCDDAARKLSVAARS 185
Query: 181 CLAEYMSVLTANP--VKKVFLTGDVLHPHLKRAKLIIEDQF-XXXXXXXXXXSTKERQTK 237
+AEY+S++ ++KV L+ D +HP + R+ ++E F KE K
Sbjct: 186 AVAEYLSLVKGGEETLRKVVLS-DPIHPFISRSLSVVEHYFPQYAIVDQDILGNKESVDK 244
Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLEL 297
VL L+ DI+ ++ + + + +++WDRL ++ H ++ +S + +Y +EI+L+
Sbjct: 245 VLALLPE-DIKKDLIEYYQN--HKEPMKRWDRLRQLVDHKKS-SSKKGGQYYDKEIMLQY 300
Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
YPRLD++VSKGVNHLLKSPF VHPKTG+I
Sbjct: 301 CYPRLDVNVSKGVNHLLKSPFSVHPKTGRI 330
>FB|FBgn0011762 [details] [associations]
symbol:DNApol-alpha50 "DNA polymerase alpha 50kD"
species:7227 "Drosophila melanogaster" [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS;NAS;IDA] [GO:0006260 "DNA
replication" evidence=NAS;IDA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS;NAS] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IEA;ISS] [GO:0003896
"DNA primase activity" evidence=IEA;NAS] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896
EMBL:AE014296 GO:GO:0022008 GO:GO:0046872 GO:GO:0003896
GO:GO:0003887 GO:GO:0006269 GO:GO:0005658 eggNOG:COG1467
GeneTree:ENSGT00390000011466 KO:K02684 OMA:GRRGAHC
PANTHER:PTHR10536 TIGRFAMs:TIGR00335 EMBL:X79801 EMBL:AY071217
PIR:A55070 RefSeq:NP_523972.2 UniGene:Dm.6051
ProteinModelPortal:Q24317 DIP:DIP-20251N IntAct:Q24317
MINT:MINT-776576 STRING:Q24317 PaxDb:Q24317
EnsemblMetazoa:FBtr0076603 GeneID:38942 KEGG:dme:Dmel_CG7108
CTD:38942 FlyBase:FBgn0011762 InParanoid:Q24317 OrthoDB:EOG42NGFV
PhylomeDB:Q24317 GenomeRNAi:38942 NextBio:811126 Bgee:Q24317
GermOnline:CG7108 Uniprot:Q24317
Length = 438
Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
Identities = 154/337 (45%), Positives = 209/337 (62%)
Query: 5 YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
Y+PE L +MLP YY+R+FP+ P+ RWL YG+ ++ F RE SFTL DIY RY+ +++
Sbjct: 23 YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQ 82
Query: 63 NELKKDLIKRCPQKIDLGAIYDICPKDHLQ-HSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
EL+K++ R P KID+G + PK+H TP +ELVFDIDMTDYD+VR CCSG
Sbjct: 83 AELEKEICSRNPIKIDIGPVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSG 142
Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
A +C KCW++M +A ++LD ALREDF F+ ++W+FSGRRGIHCWVCD A LDGRGR
Sbjct: 143 AGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYA 202
Query: 182 LAEYMSVLT----ANPVKKVFLTGDVLHPHLKRAKLIIEDQFXXXXXXXXXX-STKERQT 236
+AEY++++T A GD H LKRA I+E F T + T
Sbjct: 203 VAEYLNIITYASFAGGNSPRCSMGDRPHHSLKRALKIVEPMFEEIVLEDQNLFGTPKGVT 262
Query: 237 KVLGLVSNGDIRAEIEKEWTR-IGPGQDVEK-WDRLVAIIKHHQAKNSD---RKLKYAIE 291
K+L +V + R E+E + + G W+ + + + RKLK +
Sbjct: 263 KLLNMVHDDAARGELESYMQKNLEDGAHSRLVWESFIKYANSMRTSTTSAWSRKLKNIVA 322
Query: 292 EILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
EI L L YPRLDI+V++G NHLLK+PFC+HP TGK+C
Sbjct: 323 EIQLGLLYPRLDINVTRGFNHLLKAPFCIHPATGKVC 359
>UNIPROTKB|G8JKZ3 [details] [associations]
symbol:PRIM1 "DNA primase" species:9913 "Bos taurus"
[GO:0030894 "replisome" evidence=IEA] [GO:0003896 "DNA primase
activity" evidence=IEA] InterPro:IPR002755 InterPro:IPR014052
Pfam:PF01896 GO:GO:0003896 GO:GO:0030894
GeneTree:ENSGT00390000011466 KO:K02684 OMA:GRRGAHC
PANTHER:PTHR10536 TIGRFAMs:TIGR00335 CTD:5557 EMBL:DAAA02013526
RefSeq:NP_001139337.1 UniGene:Bt.92437 Ensembl:ENSBTAT00000027860
GeneID:506240 KEGG:bta:506240 Uniprot:G8JKZ3
Length = 418
Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
Identities = 153/332 (46%), Positives = 211/332 (63%)
Query: 3 DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
+ +DP L E+L YY+R+FPYG Y RWL YG + + F+ REFSFTL DIY RY S+N
Sbjct: 2 EAFDPAELPELLKLYYRRLFPYGQYYRWLNYGGVVKNYFQHREFSFTLKDDIYIRYQSFN 61
Query: 61 SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
+ ++L+K++ K P KID+GA+Y P H ++ F + KELVFDIDMTDYDDVR C
Sbjct: 62 NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121
Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
CS ADIC KCW M++A I+D AL+EDF F+ LWV+SGRRG+HCWVCDE+ L
Sbjct: 122 CSSADICSKCWTLMTMAIHIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181
Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFXXXXXXXXXX-STKERQT 236
RS + EY+S++ VKK + +HP ++++ II+ F K+
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFVRKSINIIKKYFEQYALVDQDILENKQSWD 241
Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILL 295
K+L LV +R E+++ + R ++W+ L I +Q N + K +E EI+L
Sbjct: 242 KILALVPE-TVRDELQQGFQR--QSNSPQRWETLKNTINKYQKNNKNDKCGLWLEWEIML 298
Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
+ +PRLDI+VSKG+NHLLKSPF VHPKTG+I
Sbjct: 299 QYCFPRLDINVSKGINHLLKSPFSVHPKTGRI 330
>UNIPROTKB|P49642 [details] [associations]
symbol:PRIM1 "DNA primase small subunit" species:9606 "Homo
sapiens" [GO:0003896 "DNA primase activity" evidence=IEA]
[GO:0030894 "replisome" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006269 "DNA replication, synthesis of
RNA primer" evidence=TAS] [GO:0000082 "G1/S transition of mitotic
cell cycle" evidence=TAS] [GO:0000084 "S phase of mitotic cell
cycle" evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell
cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006270 "DNA replication
initiation" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0032201 "telomere
maintenance via semi-conservative replication" evidence=TAS]
InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896
Reactome:REACT_115566 GO:GO:0005654 Reactome:REACT_21300
GO:GO:0046872 GO:GO:0000082 GO:GO:0006270 GO:GO:0000216
GO:GO:0000084 GO:GO:0000722 GO:GO:0003896 Reactome:REACT_383
GO:GO:0006271 GO:GO:0032201 GO:GO:0030894 eggNOG:COG1467
HOGENOM:HOG000196041 KO:K02684 PANTHER:PTHR10536 TIGRFAMs:TIGR00335
EMBL:X74330 EMBL:BC005266 EMBL:U89689 IPI:IPI00027704 PIR:S45630
RefSeq:NP_000937.1 UniGene:Hs.534339 ProteinModelPortal:P49642
IntAct:P49642 MINT:MINT-234425 STRING:P49642 PhosphoSite:P49642
DMDM:1346792 PaxDb:P49642 PRIDE:P49642 DNASU:5557
Ensembl:ENST00000338193 GeneID:5557 KEGG:hsa:5557 UCSC:uc001smd.3
CTD:5557 GeneCards:GC12M057125 HGNC:HGNC:9369 HPA:HPA040010
MIM:176635 neXtProt:NX_P49642 PharmGKB:PA33739 HOVERGEN:HBG003006
InParanoid:P49642 OrthoDB:EOG4WQ12H ChiTaRS:PRIM1 GenomeRNAi:5557
NextBio:21534 ArrayExpress:P49642 Bgee:P49642 CleanEx:HS_PRIM1
Genevestigator:P49642 GermOnline:ENSG00000198056 Uniprot:P49642
Length = 420
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 152/334 (45%), Positives = 213/334 (63%)
Query: 3 DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
+ +DP L E+L YY+R+FPY Y RWL YG + + F+ REFSFTL DIY RY S+N
Sbjct: 2 ETFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFN 61
Query: 61 SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
+ ++L+K++ K P KID+GA+Y P H ++ F + KELVFDIDMTDYDDVR C
Sbjct: 62 NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121
Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
CS ADIC KCW M++A +I+D AL+EDF F+ LWV+SGRRG+HCWVCDE+ L
Sbjct: 122 CSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181
Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFXXXXXXXXXX-STKERQT 236
RS + EY+S++ VKK + +HP ++++ II+ F KE
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWD 241
Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYA--IE-EI 293
K+L LV I E+++ + + +++W+ L + +Q N+ + KY +E EI
Sbjct: 242 KILALVPE-TIHDELQQSFQK--SHNSLQRWEHLKKVASRYQ--NNIKNDKYGPWLEWEI 296
Query: 294 LLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
+L+ +PRLDI+VSKG+NHLLKSPF VHPKTG+I
Sbjct: 297 MLQYCFPRLDINVSKGINHLLKSPFSVHPKTGRI 330
>MGI|MGI:97757 [details] [associations]
symbol:Prim1 "DNA primase, p49 subunit" species:10090 "Mus
musculus" [GO:0003896 "DNA primase activity" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006269 "DNA replication, synthesis
of RNA primer" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0030894 "replisome" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR002755
InterPro:IPR014052 Pfam:PF01896 MGI:MGI:97757 GO:GO:0046872
GO:GO:0003896 GO:GO:0030894 eggNOG:COG1467 HOGENOM:HOG000196041
KO:K02684 PANTHER:PTHR10536 TIGRFAMs:TIGR00335 CTD:5557
HOVERGEN:HBG003006 OrthoDB:EOG4WQ12H EMBL:J04620 EMBL:D13544
IPI:IPI00322337 PIR:A33269 RefSeq:NP_032947.1 UniGene:Mm.2903
ProteinModelPortal:P20664 IntAct:P20664 STRING:P20664
PhosphoSite:P20664 PRIDE:P20664 Ensembl:ENSMUST00000026461
GeneID:19075 KEGG:mmu:19075 InParanoid:P20664 NextBio:295606
Bgee:P20664 CleanEx:MM_PRIM1 Genevestigator:P20664
GermOnline:ENSMUSG00000025395 Uniprot:P20664
Length = 417
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 149/331 (45%), Positives = 207/331 (62%)
Query: 3 DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYN 60
+ +DP L E+L YY+R+FPY Y RWL YG + F+ REFSFTL DIY RY S+N
Sbjct: 2 EPFDPAELPELLKLYYRRLFPYAQYYRWLNYGGVTKNYFQHREFSFTLKDDIYIRYQSFN 61
Query: 61 SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
+ +EL+K++ K P KID+GA+Y P H ++ F + KELVFDIDMTDYDDVR C
Sbjct: 62 NQSELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121
Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
CS ADIC KCW M++A +I+D AL+EDF F+ LWV+SGRRG+HCWVCDE+ L
Sbjct: 122 CSSADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181
Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFXXXXXXXXXX-STKERQT 236
RS + EY+S++ VKK + +HP ++++ II+ F KE
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLNEKVHPFVRKSINIIKKYFEEYALVGQDILENKENWD 241
Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLE 296
K+L LV I E+++ + + ++W+ L + Q +D+ + E++L+
Sbjct: 242 KILALVPE-TIHDELQRGFQKFHSSP--QRWEHLRKVANSSQNMKNDKCGPWLEWEVMLQ 298
Query: 297 LAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
+PRLD++VSKGVNHLLKSPF VHPKTG+I
Sbjct: 299 YCFPRLDVNVSKGVNHLLKSPFSVHPKTGRI 329
>UNIPROTKB|I3LGL1 [details] [associations]
symbol:LOC100622817 "DNA primase" species:9823 "Sus scrofa"
[GO:0030894 "replisome" evidence=IEA] [GO:0003896 "DNA primase
activity" evidence=IEA] InterPro:IPR002755 InterPro:IPR014052
Pfam:PF01896 GO:GO:0003896 GO:GO:0030894
GeneTree:ENSGT00390000011466 OMA:GRRGAHC PANTHER:PTHR10536
TIGRFAMs:TIGR00335 EMBL:FP565365 Ensembl:ENSSSCT00000026608
Uniprot:I3LGL1
Length = 385
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 150/332 (45%), Positives = 209/332 (62%)
Query: 3 DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
+ +DP L E+L YY+R+FPY Y RWL YG + + F+ REFSFTL DIY RY S+N
Sbjct: 2 ETFDPTELPELLKLYYRRLFPYAQYYRWLNYGGVVKNYFQHREFSFTLKDDIYIRYQSFN 61
Query: 61 SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
+ +EL+K++ K P KID+GA+Y P H ++ F + KELVFDIDMTDYDDVR C
Sbjct: 62 NQSELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121
Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
CS ADIC KCW M++A I+D AL+EDF F+ LWV+SGRRG+HCWVCDE+ L
Sbjct: 122 CSSADICSKCWTLMTMAIHIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181
Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFXXXXXXXXXX-STKERQT 236
RS + EY+S++ VKK + +HP ++++ II+ F KE
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLNEKIHPFVRKSINIIKKYFEEYALVGQNILENKESWD 241
Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILL 295
K+L LV + E+++ + + +++W+ L +Q + + K +E EI+L
Sbjct: 242 KILALVPE-TMHDELQQSFQK--HQNSLQRWEYLKKAASRYQNNSKNDKCGPWLEWEIML 298
Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
+ +PRLDI+VSKG+NHLLKSPF VHPKTG+I
Sbjct: 299 QYCFPRLDINVSKGINHLLKSPFSVHPKTGRI 330
>UNIPROTKB|F8VNY2 [details] [associations]
symbol:PRIM1 "DNA primase" species:9606 "Homo sapiens"
[GO:0003896 "DNA primase activity" evidence=IEA] [GO:0030894
"replisome" evidence=IEA] InterPro:IPR002755 InterPro:IPR014052
Pfam:PF01896 GO:GO:0003896 GO:GO:0030894 EMBL:AC117378
PANTHER:PTHR10536 TIGRFAMs:TIGR00335 HGNC:HGNC:9369 ChiTaRS:PRIM1
IPI:IPI01021236 ProteinModelPortal:F8VNY2 Ensembl:ENST00000550770
ArrayExpress:F8VNY2 Bgee:F8VNY2 Uniprot:F8VNY2
Length = 328
Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
Identities = 149/332 (44%), Positives = 207/332 (62%)
Query: 3 DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN-----FRKREFSFTLNGDIYARYI 57
+ +DP L E+L YY+R+FPY Y RWL YG D F+ REFSFTL DIY RY
Sbjct: 2 ETFDPTELPELLKLYYRRLFPYSQYYRWLNYGGGDGVIKNYFQHREFSFTLKDDIYIRYQ 61
Query: 58 SYNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDV 115
S+N+ ++L+K++ K P KID+GA+Y P H ++ F + KELVFDIDMTDYDDV
Sbjct: 62 SFNNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDV 121
Query: 116 RNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALD 175
R CCS ADIC KCW M++A +I+D AL+EDF F+ LWV+SGRRG+HCWVCDE+ L
Sbjct: 122 RRCCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLS 181
Query: 176 GRGRSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFXXXXXXXXXX-STKE 233
RS + EY+S++ VKK + +HP ++++ II+ F KE
Sbjct: 182 SAVRSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKE 241
Query: 234 RQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYA--IE 291
K+L LV I E+++ + + +++W+ L + +Q N+ + KY +E
Sbjct: 242 SWDKILALVPE-TIHDELQQSFQK--SHNSLQRWEHLKKVASRYQ--NNIKNDKYGPWLE 296
Query: 292 -EILLELAYPRLDIHVSKGVNHLLKSPFCVHP 322
EI+L+ +PRLDI+VSKG+NHLLKSPF VHP
Sbjct: 297 WEIMLQYCFPRLDINVSKGINHLLKSPFSVHP 328
>UNIPROTKB|F1LQA1 [details] [associations]
symbol:Prim1 "DNA primase" species:10116 "Rattus
norvegicus" [GO:0003896 "DNA primase activity" evidence=IEA]
[GO:0030894 "replisome" evidence=IEA] InterPro:IPR002755
InterPro:IPR014052 Pfam:PF01896 RGD:621380 GO:GO:0003896
GO:GO:0030894 PANTHER:PTHR10536 TIGRFAMs:TIGR00335 IPI:IPI00551777
Ensembl:ENSRNOT00000045511 ArrayExpress:F1LQA1 Uniprot:F1LQA1
Length = 417
Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
Identities = 147/329 (44%), Positives = 203/329 (61%)
Query: 5 YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
+DP L E+L YY+R+FPY Y RWL YG + F+ REFSFTL DIY RY S+N+
Sbjct: 4 FDPAELPELLKLYYRRLFPYAQYYRWLNYGGVTKNYFQHREFSFTLKDDIYIRYQSFNNQ 63
Query: 63 NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
+ K++ K ++LGA+Y P H ++ F + KELVFDIDMTDYDDVR CCS
Sbjct: 64 SXXXKEMQKTNTILLELGAVYSHRPSQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCS 123
Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
ADIC KCW M++A +I+D AL+EDF F+ LWV+SGRRG+HCWVCDE+ L RS
Sbjct: 124 SADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRS 183
Query: 181 CLAEYMSVLTA-NPVKKVFLTGDVLHPHLKRAKLIIEDQFXXXXXXXXXX-STKERQTKV 238
+ EY+S++ + VKK + +HP ++++ II+ F +E K+
Sbjct: 184 GIVEYLSLIKGGHDVKKKVHLNEKVHPFVRKSINIIKKYFEEYALVDQDILENQENWDKI 243
Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELA 298
L LV +I E++K + R ++W+ L + Q +D+ + EI+L+
Sbjct: 244 LALVPE-NIHDELQKGFQRFHSSP--QRWEYLRKVASAPQNTKNDKCGPWLEWEIMLQYC 300
Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
+PRLDI+VSKGVNHLLKSPF VHPKTG+I
Sbjct: 301 FPRLDINVSKGVNHLLKSPFSVHPKTGRI 329
>POMBASE|SPAC6B12.10c [details] [associations]
symbol:spp1 "DNA primase catalytic subunit Spp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003896 "DNA primase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=TAS] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR002755 InterPro:IPR014052
Pfam:PF01896 PomBase:SPAC6B12.10c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0000790 GO:GO:0000723
GO:GO:0003896 GO:GO:0005658 eggNOG:COG1467 HOGENOM:HOG000196041
KO:K02684 OMA:GRRGAHC PANTHER:PTHR10536 TIGRFAMs:TIGR00335
PIR:T39017 RefSeq:NP_593765.1 ProteinModelPortal:O14215
IntAct:O14215 STRING:O14215 EnsemblFungi:SPAC6B12.10c.1
GeneID:2543323 KEGG:spo:SPAC6B12.10c OrthoDB:EOG4CVKGS
NextBio:20804339 Uniprot:O14215
Length = 454
Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
Identities = 136/328 (41%), Positives = 203/328 (61%)
Query: 11 TEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKD 68
+E + YY+ +FP+ +WL +G + ++F REF+FTL D Y RY+S+++ ELKK+
Sbjct: 32 SETMIQYYRHLFPWKYLFQWLNHGPVVTNDFAHREFAFTLPNDAYIRYLSFSNWEELKKE 91
Query: 69 LIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
+ CP + ++G +Y P+D ++ S F P KELVFDIDMTDYDDVR CCS +ICE
Sbjct: 92 ALNLCPSRFEVGPVYSANPRDRKTIRKSTFHPLKKELVFDIDMTDYDDVRTCCSKTNICE 151
Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
KCW +++IA ++LD EDF F+ +LWV+SGRRGIH W+CDE A +LD R R +A Y+
Sbjct: 152 KCWPFITIAVQVLDICFHEDFGFKHILWVYSGRRGIHAWICDEIACSLDDRSRRMIASYL 211
Query: 187 SVLTANPVKKVFLTGDV---LHPHLKRAKLIIEDQFXXXXXXXXXX-STKERQTKVLGLV 242
V+ NP V L ++ LHPHL R+ I++ F ++KE +L L+
Sbjct: 212 QVVVGNPQGGVRLINNLKRPLHPHLTRSLNILKSAFVKIVLEDQDPWASKEGAENLLKLL 271
Query: 243 SNGDIRAEIEKEWTRIGPGQDVE-KWDRLVAIIKHHQ-AKNSDRKLKYAIEEILLELAYP 300
+ D+ + + K+W + P + + KW + ++ A S + A ++I+L YP
Sbjct: 272 PDKDLASALRKKW-EVDPERSSKNKWSDIDTVLASGSIASISPSVIAIAKQDIVLTYLYP 330
Query: 301 RLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
RLD+ VS+ +NHLLKSPFCVHP T ++C
Sbjct: 331 RLDVEVSRHLNHLLKSPFCVHPGTSRVC 358
>CGD|CAL0004759 [details] [associations]
symbol:orf19.4030 species:5476 "Candida albicans" [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003896 "DNA
primase activity" evidence=IEA] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] InterPro:IPR002755 InterPro:IPR014052
Pfam:PF01896 CGD:CAL0004759 GO:GO:0003896 EMBL:AACQ01000012
GO:GO:0030894 EMBL:AACQ01000011 eggNOG:COG1467 KO:K02684
PANTHER:PTHR10536 TIGRFAMs:TIGR00335 RefSeq:XP_721938.1
RefSeq:XP_722099.1 ProteinModelPortal:Q5AJZ0 STRING:Q5AJZ0
GeneID:3636269 GeneID:3636401 KEGG:cal:CaO19.11513
KEGG:cal:CaO19.4030 Uniprot:Q5AJZ0
Length = 452
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 126/329 (38%), Positives = 189/329 (57%)
Query: 14 LPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
+ FYY+R+ P+ +WL + +F REF++ IY RY S+ + E KK ++
Sbjct: 29 MKFYYQRLLPFRYIFQWLSHSPKPTKDFTMREFAYEYRSKIYQRYNSFGTLEEFKKSVVT 88
Query: 72 RCPQKIDLGAIYDICPKD--HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
P + ++GA+Y I PK+ +L F P+ KELVFDID+TDYDD+R CC G DIC KCW
Sbjct: 89 ANPTRFEIGAVYKINPKERKNLPKQAFKPESKELVFDIDLTDYDDIRTCCQGTDICCKCW 148
Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
+++ + KI++ ALREDF F+ L+WVFSGRRG HCWV D+ A LD R + +Y+ VL
Sbjct: 149 KFIQVGSKIIEAALREDFGFEHLVWVFSGRRGAHCWVSDKRARELDETSRKAIIDYLDVL 208
Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQFXXXXXXXXXX-STKERQTK-------VLGL 241
++ HPH++R+ I++ +F +T +TK +L
Sbjct: 209 SSKNQNGSLNIKKPFHPHVERSFEIVKKEFLNVILQEQDPWNTTSEETKAWKQVDELLAF 268
Query: 242 VSNGDIRAEIEKEWTRIGPGQ-DVEKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLELAY 299
+ N ++ E++ +W G EKWD + + + NS +L A ++I++ Y
Sbjct: 269 IPNKALQIELKNKWKGQTFGSTSKEKWDDISTVASNVLKSNSQVAQLTEAKKDIIIYYMY 328
Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
PRLD+ VS+ V HLLKSPFC+HP TG +C
Sbjct: 329 PRLDVQVSRQVIHLLKSPFCIHPGTGNVC 357
>ASPGD|ASPL0000041026 [details] [associations]
symbol:AN3033 species:162425 "Emericella nidulans"
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003896 "DNA primase activity"
evidence=IEA] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896 EMBL:BN001306
EMBL:AACD01000051 GO:GO:0003896 GO:GO:0030894 eggNOG:COG1467
HOGENOM:HOG000196041 KO:K02684 PANTHER:PTHR10536 TIGRFAMs:TIGR00335
OrthoDB:EOG4CVKGS RefSeq:XP_660637.1 ProteinModelPortal:Q5B8U7
STRING:Q5B8U7 EnsemblFungi:CADANIAT00010046 GeneID:2874466
KEGG:ani:AN3033.2 OMA:EIGPVYN Uniprot:Q5B8U7
Length = 521
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 126/326 (38%), Positives = 194/326 (59%)
Query: 11 TEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELKKD 68
TE + +Y+R+FP+ +WL +G + + F REF+ TL D Y RY SY + + +KD
Sbjct: 89 TETMLQFYQRLFPFRYLFQWLNHGIVPSPDFGNREFALTLQNDAYLRYQSYPTADLFRKD 148
Query: 69 LIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
++K P + ++G +Y+ P+D L P KELVFDID+TDYDD+R CC+ A+IC
Sbjct: 149 ILKMNPSRFEIGPVYNRNPRDRKTLGSGQLKPLAKELVFDIDLTDYDDIRTCCTKANICA 208
Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
KCW ++++A K++DTALR+DF FQ +LWV+SGRRG H WVCD A L R +A Y+
Sbjct: 209 KCWAFVTMAIKVVDTALRQDFGFQHILWVYSGRRGAHAWVCDSRARNLSDDRRRGIAGYL 268
Query: 187 SVLTA--NPVKKVFLTGDVLHPHLKRAKLIIEDQFXXXXXXXXXX-STKERQTKVLGLVS 243
++ N K+V L LHPH+ R+ I++ F ++ E++ ++L L+
Sbjct: 269 DLVRGGTNSGKRVNLKRP-LHPHMTRSLEILKPYFVQTTLVDQDTFASPEQEQRLLSLLP 327
Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN-SDRKLKYAIEEILLELAYPRL 302
+ + + ++W KW + A+ K ++ + L+ A ++I+LE YPRL
Sbjct: 328 DKGLNDSLRRKWESAPDRSSTNKWADIDALAKAGKSSTLNPATLREAKQDIVLEYTYPRL 387
Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
D VSK + HLLKSPF +HP TG++C
Sbjct: 388 DSEVSKKMIHLLKSPFVIHPGTGRVC 413
>WB|WBGene00004180 [details] [associations]
symbol:pri-1 species:6239 "Caenorhabditis elegans"
[GO:0003896 "DNA primase activity" evidence=IEA] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] InterPro:IPR002755 InterPro:IPR014052
Pfam:PF01896 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0002119 GO:GO:0046872 GO:GO:0000910 GO:GO:0040035 EMBL:Z22179
GO:GO:0003896 GO:GO:0030894 PIR:S40976 RefSeq:NP_001255015.1
ProteinModelPortal:P34471 IntAct:P34471 MINT:MINT-226566
STRING:P34471 PaxDb:P34471 EnsemblMetazoa:F58A4.4a.1
EnsemblMetazoa:F58A4.4a.2 GeneID:176358 KEGG:cel:CELE_F58A4.4
UCSC:F58A4.4 CTD:176358 WormBase:F58A4.4 eggNOG:COG1467
GeneTree:ENSGT00390000011466 HOGENOM:HOG000196041 InParanoid:P34471
KO:K02684 OMA:GRRGAHC NextBio:892232 PANTHER:PTHR10536
TIGRFAMs:TIGR00335 Uniprot:P34471
Length = 410
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 130/344 (37%), Positives = 190/344 (55%)
Query: 5 YDPESLTEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSP 62
Y+ L + LP YYK FP P+ +WL YG N D F +REF+F L D++ RY SYN
Sbjct: 3 YNSIRLPQDLPIYYKNFFPVKPFTKWLRYGQNNGDYFNRREFAFILADDVHIRYRSYNDE 62
Query: 63 NELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGA 122
+ K L P+K+D+GA+Y+ P ++ +H+ + +ELVFDID+TDYD VRNCC A
Sbjct: 63 HAFFKALSSTNPEKLDIGAVYNHEPINNKRHTDYQAVERELVFDIDLTDYDPVRNCCKDA 122
Query: 123 DICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCL 182
+C KCW++M +A KILD L + FDF+ +WVFSGRRG+HCWV D+ A L+ RS +
Sbjct: 123 TVCPKCWKFMVLAVKILDFQLEDMFDFKARMWVFSGRRGVHCWVGDKKARMLNNYQRSAI 182
Query: 183 AEYMSVLTANPVKKVFLTGDV----LHPHLKRA-KLIIEDQFXXXXXXXXXXSTKE---R 234
A +++ N +V G + P ++ A + ++D KE
Sbjct: 183 ATRLNLFKKNGQCEV-TEGRAKMTKVPPIVRDAFNVALKDGVFEKMIYDQGWLDKEDFIT 241
Query: 235 QTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN---SDRKLKYAIE 291
+ K + V D+R+ E T P E+W+ + + K+ D L + ++
Sbjct: 242 EYKFMSEVGRDDLRSLSETYKT---PQ---ERWNMIRGLFDDDYRKSLSPKDGLLDFKMQ 295
Query: 292 E--------ILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
+L+ YPRLD++VS G NHLLKSPFC+HPKTG +
Sbjct: 296 GRDRNYLLYFVLQRCYPRLDVNVSTGTNHLLKSPFCIHPKTGNV 339
>SGD|S000001447 [details] [associations]
symbol:PRI1 "Subunit of DNA primase" species:4932
"Saccharomyces cerevisiae" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030894 "replisome" evidence=IEA] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=IEA;IDA] [GO:0003896 "DNA primase
activity" evidence=IEA;IGI;IMP;IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0006270 "DNA
replication initiation" evidence=IC] [GO:0006273 "lagging strand
elongation" evidence=IC] InterPro:IPR002755 InterPro:IPR014052
Pfam:PF01896 SGD:S000001447 GO:GO:0005524 GO:GO:0046872
EMBL:BK006942 GO:GO:0006270 EMBL:X79743 GO:GO:0003896 GO:GO:0006273
GO:GO:0005658 EMBL:Z37996 eggNOG:COG1467
GeneTree:ENSGT00390000011466 HOGENOM:HOG000196041 KO:K02684
OMA:GRRGAHC PANTHER:PTHR10536 TIGRFAMs:TIGR00335 OrthoDB:EOG4CVKGS
EMBL:Y00458 EMBL:AY692859 PIR:S48352 RefSeq:NP_012273.1
ProteinModelPortal:P10363 DIP:DIP-2534N IntAct:P10363
MINT:MINT-572443 STRING:P10363 PaxDb:P10363 PeptideAtlas:P10363
EnsemblFungi:YIR008C GeneID:854825 KEGG:sce:YIR008C CYGD:YIR008c
NextBio:977680 Genevestigator:P10363 GermOnline:YIR008C
Uniprot:P10363
Length = 409
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 115/325 (35%), Positives = 173/325 (53%)
Query: 14 LPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
+ +YYK ++P+ WL + + REF+ Y RY S+NS + K + K
Sbjct: 15 MEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIEK 74
Query: 72 RCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
P + ++GAIY+ P+ D L S KELVFDIDM DYD R CCSGA +C KCW
Sbjct: 75 ANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSGAQVCSKCW 134
Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
+++S+A KI +TALREDF ++ +WVFSGRRG HCWV D+ A AL R + +Y++V+
Sbjct: 135 KFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRNVLDYVNVI 194
Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQFXXXXXXXXXXSTKERQT--KVLGLVSNGDI 247
K HPHL R+ ++ F ++ +L + + +
Sbjct: 195 RDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLLPALYDKQL 254
Query: 248 RAEIEKEWTRIGPGQDVEKW---DRLV-AIIKHHQAKNSDRKLKYAIEEILLELAYPRLD 303
++K W EKW D++ ++ K + + KL+ E+++L YP+LD
Sbjct: 255 IDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVLMTLYPKLD 314
Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
+ V+K HLLK+PFC+HP TG +C
Sbjct: 315 VEVTKQTIHLLKAPFCIHPATGNVC 339
>WB|WBGene00020761 [details] [associations]
symbol:T24C4.5 species:6239 "Caenorhabditis elegans"
[GO:0003896 "DNA primase activity" evidence=IEA] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896 GO:GO:0009792
GO:GO:0006898 GO:GO:0003896 GO:GO:0030894 eggNOG:COG1467
GeneTree:ENSGT00390000011466 HOGENOM:HOG000196041 KO:K02684
PANTHER:PTHR10536 EMBL:FO081214 PIR:T33670 RefSeq:NP_497283.2
ProteinModelPortal:Q9TZ34 STRING:Q9TZ34 PaxDb:Q9TZ34
EnsemblMetazoa:T24C4.5 GeneID:188846 KEGG:cel:CELE_T24C4.5
UCSC:T24C4.5 CTD:188846 WormBase:T24C4.5 InParanoid:Q9TZ34
NextBio:940300 Uniprot:Q9TZ34
Length = 318
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 86/190 (45%), Positives = 123/190 (64%)
Query: 5 YDPESLTEMLPFYYKRIFPYGPYLRWLFYG-NL-DNFRKREFSFTLNGDIYARYISYNSP 62
Y+ L + LP YYK FP P+ +WL YG N D F +REF+F L D++ RY SYN
Sbjct: 3 YNSIRLPQDLPIYYKNFFPVKPFTKWLCYGQNYGDYFNRREFTFILADDVHIRYRSYNDE 62
Query: 63 NELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGA 122
+ K L P+K+D+GA+Y+ P ++ +++ + +ELVFDID+TDYD VRNCC A
Sbjct: 63 HSFVKALSSTNPEKLDIGAVYNHEPINNKRYTDYQAVERELVFDIDLTDYDPVRNCCKDA 122
Query: 123 DICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCL 182
+C KCW++M +A +ILD L E F+F+ +WVFSGRRG+HCWV D+ A L+ RS +
Sbjct: 123 TVCPKCWKFMVLAVRILDFQLEEMFNFKARMWVFSGRRGVHCWVGDKKARMLNNNQRSAI 182
Query: 183 AEYMSVLTAN 192
A +++ N
Sbjct: 183 ATRLNLFKKN 192
>UNIPROTKB|F1LNK6 [details] [associations]
symbol:Prim1 "DNA primase" species:10116 "Rattus
norvegicus" [GO:0003896 "DNA primase activity" evidence=IEA]
[GO:0030894 "replisome" evidence=IEA] InterPro:IPR002755
InterPro:IPR014052 Pfam:PF01896 RGD:621380 GO:GO:0003896
GO:GO:0030894 GeneTree:ENSGT00390000011466 PANTHER:PTHR10536
IPI:IPI00950150 Ensembl:ENSRNOT00000065593 ArrayExpress:F1LNK6
Uniprot:F1LNK6
Length = 297
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 86/208 (41%), Positives = 125/208 (60%)
Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
ADIC KCW M++A +I+D AL+EDF F+ LWV+SGRRG+HCWVCDE+ L RS
Sbjct: 4 ADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSG 63
Query: 182 LAEYMSVLTA-NPVKKVFLTGDVLHPHLKRAKLIIEDQFXXXXXXXXXX-STKERQTKVL 239
+ EY+S++ + VKK + +HP ++++ II+ F +E K+L
Sbjct: 64 IVEYLSLIKGGHDVKKKVHLNEKVHPFVRKSINIIKKYFEEYALVDQDILENQENWDKIL 123
Query: 240 GLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAY 299
LV + E++K + R ++W+ L + Q +D+ + EI+L+ +
Sbjct: 124 ALVPETPVHDELQKGFQRFHSSP--QRWEYLRKVASAPQNTKNDKCGPWLEWEIMLQYCF 181
Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
PRLDI+VSKGVNHLLKSPF VHPKTG+I
Sbjct: 182 PRLDINVSKGVNHLLKSPFSVHPKTGRI 209
>UNIPROTKB|F8VSB2 [details] [associations]
symbol:PRIM1 "DNA primase small subunit" species:9606 "Homo
sapiens" [GO:0003896 "DNA primase activity" evidence=IEA]
InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896 GO:GO:0003896
EMBL:AC117378 PANTHER:PTHR10536 HGNC:HGNC:9369 ChiTaRS:PRIM1
IPI:IPI01022277 ProteinModelPortal:F8VSB2 Ensembl:ENST00000552590
ArrayExpress:F8VSB2 Bgee:F8VSB2 Uniprot:F8VSB2
Length = 185
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 77/146 (52%), Positives = 102/146 (69%)
Query: 3 DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
+ +DP L E+L YY+R+FPY Y RWL YG + + F+ REFSFTL DIY RY S+N
Sbjct: 2 ETFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFN 61
Query: 61 SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
+ ++L+K++ K P KID+GA+Y P H ++ F + KELVFDIDMTDYDDVR C
Sbjct: 62 NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121
Query: 119 CSGADICEKCWRYMSIACKILDTALR 144
CS ADIC KCW M++A +I+D AL+
Sbjct: 122 CSSADICPKCWTLMTMAIRIIDRALK 147
>RGD|621380 [details] [associations]
symbol:Prim1 "DNA primase, p49 subunit" species:10116 "Rattus
norvegicus" [GO:0003896 "DNA primase activity" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS] [GO:0030894 "replisome"
evidence=IEA] InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896
RGD:621380 GO:GO:0003896 GO:GO:0030894 HOGENOM:HOG000196041
KO:K02684 PANTHER:PTHR10536 CTD:5557 HOVERGEN:HBG003006
EMBL:BC088272 IPI:IPI00948532 RefSeq:NP_001008768.1
UniGene:Rn.92497 STRING:Q5M832 Ensembl:ENSRNOT00000064210
GeneID:246327 KEGG:rno:246327 UCSC:RGD:621380 InParanoid:Q5M832
NextBio:623762 Genevestigator:Q5M832 Uniprot:Q5M832
Length = 296
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 86/208 (41%), Positives = 125/208 (60%)
Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
ADIC KCW M++A +I+D AL+EDF F+ LWV+SGRRG+HCWVCDE+ L RS
Sbjct: 4 ADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSG 63
Query: 182 LAEYMSVLTA-NPVKKVFLTGDVLHPHLKRAKLIIEDQFXXXXXXXXXX-STKERQTKVL 239
+ EY+S++ + VKK + +HP ++++ II+ F +E K+L
Sbjct: 64 IVEYLSLIKGGHDVKKKVHLNEKVHPFVRKSINIIKKYFEEYALVDQDILENQENWDKIL 123
Query: 240 GLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAY 299
LV + E++K + R ++W+ L + Q +D+ + EI+L+ +
Sbjct: 124 ALVPE-TVHDELQKGFQRFHSSP--QRWEYLRKVASAPQNTKNDKCGPWLEWEIMLQYCF 180
Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
PRLDI+VSKGVNHLLKSPF VHPKTG+I
Sbjct: 181 PRLDINVSKGVNHLLKSPFSVHPKTGRI 208
>UNIPROTKB|F1PDB3 [details] [associations]
symbol:PRIM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003896 "DNA primase activity" evidence=IEA]
InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896 GO:GO:0003896
GeneTree:ENSGT00390000011466 PANTHER:PTHR10536 EMBL:AAEX03006933
Ensembl:ENSCAFT00000000231 OMA:SADICSN Uniprot:F1PDB3
Length = 157
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 76/144 (52%), Positives = 100/144 (69%)
Query: 5 YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSP 62
+DP L E+L YY+R+FPY Y RWL YG + + F+ REFSFTL DIY RY S+++
Sbjct: 4 FDPAELPELLKLYYRRLFPYAQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFSNQ 63
Query: 63 NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
+L+K++ K P KID+GA+Y P H ++ F + KELVFDIDMTDYDDVR CCS
Sbjct: 64 RDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCS 123
Query: 121 GADICEKCWRYMSIACKILDTALR 144
ADIC KCW M++A +I+D AL+
Sbjct: 124 SADICSKCWTLMTMAIRIIDRALK 147
>DICTYBASE|DDB_G0285853 [details] [associations]
symbol:polA4 "DNA primase small subunit"
species:44689 "Dictyostelium discoideum" [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IEA;ISS] [GO:0003896
"DNA primase activity" evidence=IEA] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0030894 "replisome" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896
dictyBase:DDB_G0285853 GO:GO:0006270 EMBL:AAFI02000082
GO:GO:0003896 GO:GO:0003887 GO:GO:0006273 GO:GO:0006269
GO:GO:0005658 eggNOG:COG1467 KO:K02684 OMA:GRRGAHC
PANTHER:PTHR10536 TIGRFAMs:TIGR00335 RefSeq:XP_637963.1
STRING:Q54MM7 EnsemblProtists:DDB0232279 GeneID:8625316
KEGG:ddi:DDB_G0285853 InParanoid:Q54MM7 Uniprot:Q54MM7
Length = 409
Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 104/309 (33%), Positives = 163/309 (52%)
Query: 39 FRKREFSFTLN---GDIYARYISYNSPNELKK--------DLIKRCPQKIDLGAIYDICP 87
F +REFS +N R S+N +LK+ D + P+++D+G I P
Sbjct: 55 FERREFSVRINKVSSSFVIRNKSFNRVEDLKEFLKGRQNIDGVYEVPERLDIGPICSWEP 114
Query: 88 KDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDF 147
S + P KELVFDID+ DY+ +R CCS +CEKCW +++++ + +D LRE F
Sbjct: 115 SKKATVSDYQPVSKELVFDIDVDDYNPIRVCCSSTSLCEKCWGFLAVSAEFIDNYLRECF 174
Query: 148 DFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSV-LTANPVKKVFLTGD-VLH 205
FQ +++VFSGRRG+H WV D AA L R+ + ++ V L+ N + + + D +L
Sbjct: 175 GFQQIMYVFSGRRGLHIWVSDRAAQHLTRENRASILNHIRVELSQNQIPILKRSFDQILL 234
Query: 206 PHLKRAKLIIEDQ--FXXXXXXXXXXS----TKERQTKVLGLVSNGDIRAEIEKEWTRIG 259
PH + K IIE+Q F S + +RQ + + L + DI EK+ I
Sbjct: 235 PHFE--KCIIEEQQIFTNEKQRKNFLSLLPISYKRQDRKITLTPSEDI----EKKLKEI- 287
Query: 260 PGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFC 319
+++ + A+ + + D LK + ++ PR+D V+ G++HLLKSPFC
Sbjct: 288 QDENLSNSEIWFAVKSYLE----DNNLKEHLYNLVFHYTMPRIDEPVTIGLDHLLKSPFC 343
Query: 320 VHPKTGKIC 328
+HP T K+C
Sbjct: 344 IHPDTKKLC 352
>UNIPROTKB|H0YIP2 [details] [associations]
symbol:PRIM1 "DNA primase small subunit" species:9606 "Homo
sapiens" [GO:0003896 "DNA primase activity" evidence=IEA]
InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896 GO:GO:0003896
EMBL:AC117378 PANTHER:PTHR10536 HGNC:HGNC:9369 ChiTaRS:PRIM1
Ensembl:ENST00000549549 Bgee:H0YIP2 Uniprot:H0YIP2
Length = 152
Score = 170 (64.9 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 34/67 (50%), Positives = 49/67 (73%)
Query: 264 VEKWDRLVAIIKHHQAKNSDRKLKYA--IE-EILLELAYPRLDIHVSKGVNHLLKSPFCV 320
+++W+ L + +Q N+ + KY +E EI+L+ +PRLDI+VSKG+NHLLKSPF V
Sbjct: 47 LQRWEHLKKVASRYQ--NNIKNDKYGPWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSV 104
Query: 321 HPKTGKI 327
HPKTG+I
Sbjct: 105 HPKTGRI 111
>UNIPROTKB|F1SL96 [details] [associations]
symbol:F1SL96 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003896 "DNA primase activity" evidence=IEA]
InterPro:IPR002755 InterPro:IPR014052 Pfam:PF01896 GO:GO:0003896
GeneTree:ENSGT00390000011466 PANTHER:PTHR10536 EMBL:CU468457
Ensembl:ENSSSCT00000000442 OMA:ANQKESE Uniprot:F1SL96
Length = 169
Score = 166 (63.5 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 32/65 (49%), Positives = 46/65 (70%)
Query: 264 VEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILLELAYPRLDIHVSKGVNHLLKSPFCVHP 322
+++W+ L +Q + + K +E EI+L+ +PRLDI+VSKG+NHLLKSPF VHP
Sbjct: 16 LQRWEYLKKAASRYQNNSKNDKCGPWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVHP 75
Query: 323 KTGKI 327
KTG+I
Sbjct: 76 KTGRI 80
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.141 0.452 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 328 318 0.00083 116 3 11 22 0.48 33
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 616 (65 KB)
Total size of DFA: 258 KB (2138 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.78u 0.15s 26.93t Elapsed: 00:00:01
Total cpu time: 26.79u 0.15s 26.94t Elapsed: 00:00:01
Start: Thu Aug 15 14:30:49 2013 End: Thu Aug 15 14:30:50 2013