RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13396
(328 letters)
>d1v33a_ d.264.1.1 (A:) DNA primase {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 346
Score = 231 bits (591), Expect = 1e-74
Identities = 58/322 (18%), Positives = 103/322 (31%), Gaps = 22/322 (6%)
Query: 8 ESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGD-IYARYISYNSPNELK 66
E E +Y + ++ + REF F +G+ R Y +L+
Sbjct: 5 EVTREERKNFYTNEWKVKDIPDFI----VKTLELREFGFDHSGEGPSDRKNQYTDIRDLE 60
Query: 67 KDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
+ P + P++ ELVFDID D R +C
Sbjct: 61 DYIRATAPYAVYSSVALYEKPQEME-----GWLGTELVFDIDAKDLPLRRCEHEPGTVCP 115
Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
C + LRE+ F + ++SG RG H V DE AL LD + R + ++
Sbjct: 116 ICLNDAKEIVRDTVIILREELGFNDIHIIYSG-RGYHIRVLDEWALKLDSKSRERILSFV 174
Query: 187 SVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGD 246
S V++ L + + ++ + + ++
Sbjct: 175 SASEIEDVEE----FRKLLLNKRGWFVLNHGYPRAFRLRFGYFILRIKLPHLINAGIRKS 230
Query: 247 IRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHV 306
I I K ++ + AI+ L + + + D V
Sbjct: 231 IAKSILKSKE------EIYEEFVRKAILAAFPQGVGIESLA-KLFALSTRFSKSYFDGRV 283
Query: 307 SKGVNHLLKSPFCVHPKTGKIC 328
+ + +L+ P +H K G I
Sbjct: 284 TVDLKRILRLPSTLHSKVGLIA 305
>d1zt2a1 d.264.1.1 (A:3-329) DNA primase small subunit PriA
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 327
Score = 127 bits (321), Expect = 4e-35
Identities = 47/208 (22%), Positives = 69/208 (33%), Gaps = 37/208 (17%)
Query: 5 YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFT-LNGDIYARYISYNSPN 63
+ YY P + REF+ D Y R++S++S
Sbjct: 7 GQTNLIKSFFRNYYLNAELELP----------KDMELREFALQPFGSDTYVRHLSFSSSE 56
Query: 64 ELKKDLIKR-CPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVR-----N 117
EL+ L+ R P + + P +L+FDID +R
Sbjct: 57 ELRDYLVNRNLPLHLFYSSARYQLPSAR-NMEEKAWMGSDLLFDIDADHLCKLRSIRFCP 115
Query: 118 CCSGADICEKCWRYMSIACKI-----------------LDTALREDFDFQLLLWVFSGRR 160
C A + EKC R + L L +DF + ++ FSG R
Sbjct: 116 VCGNAVVSEKCERDNVETLEYVEMTSECIKRGLEQTRNLVEILEDDFGLKPKVY-FSGNR 174
Query: 161 GIHCWV-CDEAALALDGRGRSCLAEYMS 187
G H V C LD R +AEY+
Sbjct: 175 GFHVQVDCYGNCALLDSDERKEIAEYVM 202
Score = 26.1 bits (57), Expect = 5.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
+D V+ V L++ P +H K+G I
Sbjct: 232 IDEQVTIDVKRLIRIPNSLHGKSGLIV 258
>d4cpai_ g.3.2.1 (I:) Carboxypeptidase A inhibitor {Potato [TaxId:
4113]}
Length = 37
Score = 25.4 bits (55), Expect = 1.3
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 119 CSGADICEKCWRY 131
CSGA C+ CW
Sbjct: 17 CSGAWFCQACWNS 29
>d2af4c1 c.77.1.5 (C:2-333) Phosphotransacetylase Pta
{Methanosarcina thermophila [TaxId: 2210]}
Length = 332
Score = 27.8 bits (61), Expect = 2.1
Identities = 9/54 (16%), Positives = 17/54 (31%)
Query: 66 KKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCC 119
+ IK +DL + PK + + + EL +T +
Sbjct: 48 NEADIKALAGDLDLSKAKIVDPKTYEKKDEYINAFYELRKHKGITLENAAEIMS 101
>d2gy9t1 a.7.6.1 (T:4-86) Ribosomal protein S20 {Escherichia coli
[TaxId: 562]}
Length = 83
Score = 24.6 bits (54), Expect = 5.7
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 280 KNSDRKLKYAIE-------EILLELAYPRLDIHVSKGVNH 312
+ +K+ AIE + P +D +KG+ H
Sbjct: 25 RTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIH 64
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 197
Score = 25.9 bits (57), Expect = 6.6
Identities = 7/35 (20%), Positives = 10/35 (28%), Gaps = 7/35 (20%)
Query: 226 QELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGP 260
L K GLV +G + + P
Sbjct: 18 FRALDGK-------GLVPDGYVEGWKKTFEEDFSP 45
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase
{Bacillus smithii [TaxId: 1479]}
Length = 203
Score = 25.5 bits (56), Expect = 8.3
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 9/59 (15%)
Query: 202 DVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGP 260
D PH + K LE LL K L+S+ I I+ +GP
Sbjct: 1 DPRFPHHHPRPQSFWEARAKALES--LLIEK-------RLLSSDAIERVIKHYEHELGP 50
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 25.7 bits (55), Expect = 8.6
Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 6/116 (5%)
Query: 62 PNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
+L+ L+ R +++ + D+ + + T F + D
Sbjct: 181 EGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQIL 240
Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGR 177
+ +TAL + + L R + A AL+G
Sbjct: 241 EARERLPK------VEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGA 290
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.141 0.446
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,379,613
Number of extensions: 69848
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 24
Length of query: 328
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,226,816
Effective search space: 296889472
Effective search space used: 296889472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.6 bits)