Query psy1340
Match_columns 51
No_of_seqs 9 out of 11
Neff 1.7
Searched_HMMs 29240
Date Fri Aug 16 18:29:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qcw_A Neurexin-1-alpha; synap 97.4 7.7E-05 2.6E-09 56.8 3.4 46 2-49 220-266 (1245)
2 1pz7_A Agrin; structural prote 97.3 0.00019 6.4E-09 43.9 3.5 43 1-49 4-60 (204)
3 2r1d_A Neurexin-1-beta, neurex 97.0 0.001 3.4E-08 42.5 4.5 46 2-49 29-75 (226)
4 3v64_A Low-density lipoprotein 96.9 0.00095 3.3E-08 40.6 3.5 38 12-49 2-47 (191)
5 2r16_A Neurexin-1-alpha; beta- 96.6 0.0036 1.2E-07 37.8 4.5 36 11-49 4-39 (182)
6 2h0b_A Neurexin-1-alpha; B-san 96.2 0.0062 2.1E-07 36.1 3.9 37 11-49 4-40 (184)
7 2r1b_A Neurexin-1-beta, neurex 96.1 0.009 3.1E-07 37.6 4.4 41 6-49 5-47 (220)
8 3sh4_A LG3 peptide; actin disa 96.0 0.0038 1.3E-07 38.0 2.5 36 14-49 7-42 (195)
9 3asi_A Neurexin-1-alpha; beta- 96.0 0.0071 2.4E-07 40.0 3.8 45 2-49 215-261 (410)
10 3pve_A Agrin, AGRN protein; mR 95.5 0.0093 3.2E-07 36.0 2.7 39 11-49 8-46 (189)
11 3qcw_A Neurexin-1-alpha; synap 95.5 0.012 4.2E-07 44.9 3.8 44 2-49 649-692 (1245)
12 3bod_A Neurexin-1-alpha; neure 95.1 0.023 7.7E-07 34.1 3.5 37 12-49 4-41 (178)
13 2jd4_A Laminin subunit alpha-1 93.7 0.093 3.2E-06 34.0 4.2 43 4-49 190-232 (383)
14 1dyk_A Laminin alpha 2 chain; 93.1 0.061 2.1E-06 35.3 2.7 44 2-49 19-69 (394)
15 2jd4_A Laminin subunit alpha-1 92.9 0.052 1.8E-06 35.1 2.1 35 12-49 21-55 (383)
16 2wjs_A Laminin subunit alpha-2 91.3 0.077 2.6E-06 36.8 1.6 31 15-49 13-43 (608)
17 2wjs_A Laminin subunit alpha-2 90.8 0.2 6.7E-06 34.8 3.2 33 14-49 205-237 (608)
18 1d2s_A SHBG, sex hormone-bindi 81.8 1.9 6.7E-05 25.5 3.7 12 38-49 27-38 (170)
19 1qwr_A Mannose-6-phosphate iso 81.6 0.89 3E-05 30.6 2.4 22 14-36 184-205 (319)
20 1h30_A GAS6, growth-arrest-spe 79.6 1.4 4.8E-05 29.3 2.8 31 15-49 43-73 (422)
21 1f5f_A SHBG, sex hormone-bindi 77.2 3 0.0001 25.1 3.6 24 22-49 26-50 (205)
22 1h30_A GAS6, growth-arrest-spe 72.5 2.6 8.8E-05 28.0 2.6 42 6-49 213-261 (422)
23 1dyk_A Laminin alpha 2 chain; 68.3 4.5 0.00015 26.4 3.0 41 5-49 204-244 (394)
24 1uku_A CUTA1, periplasmic diva 57.7 7.9 0.00027 22.9 2.5 23 26-49 37-59 (102)
25 1nza_A CUTA, divalent cation t 57.5 8.2 0.00028 22.9 2.6 23 26-49 39-61 (103)
26 2nuh_A Periplasmic divalent ca 52.1 11 0.00037 23.0 2.6 23 26-49 42-64 (118)
27 1p1l_A CUTA, periplasmic dival 50.3 12 0.00041 22.1 2.4 23 26-49 38-60 (102)
28 1vhf_A Periplasmic divalent ca 50.2 12 0.0004 22.7 2.4 23 26-49 39-61 (113)
29 1h59_B Insulin-like growth fac 50.1 3.8 0.00013 23.0 0.2 11 3-13 5-15 (54)
30 3ahp_A CUTA1; thermostable pro 49.3 13 0.00045 22.1 2.6 23 26-49 43-65 (108)
31 3s57_A Alpha-ketoglutarate-dep 49.3 6.4 0.00022 24.8 1.2 21 28-48 178-202 (204)
32 2zom_A CUTA1, protein CUTA, ch 47.7 14 0.00046 22.2 2.4 23 26-49 47-69 (113)
33 1naq_A Periplasmic divalent ca 47.1 14 0.00048 22.1 2.4 23 26-49 48-70 (112)
34 3gsd_A Divalent-cation toleran 44.7 16 0.00053 22.5 2.4 23 26-49 58-80 (122)
35 1o5j_A Periplasmic divalent ca 42.7 18 0.00061 21.9 2.4 23 26-49 49-71 (113)
36 1gml_A T-complex protein 1 sub 41.8 9.5 0.00033 23.5 1.1 16 7-22 158-173 (178)
37 2zfh_A CUTA; human brain, trim 41.6 18 0.0006 24.2 2.4 23 26-49 105-127 (179)
38 1kr4_A Protein TM1056, CUTA; s 41.3 19 0.00065 22.2 2.4 23 26-49 59-81 (125)
39 1osc_A Similar to divalent cat 41.0 19 0.00066 22.1 2.4 23 26-49 60-82 (126)
40 4e98_A CUTA1 divalent ION tole 40.6 19 0.00066 22.7 2.4 23 26-49 73-95 (138)
41 2iuw_A Alkylated repair protei 38.1 12 0.00041 23.9 1.2 20 28-47 205-228 (238)
42 3i3q_A Alpha-ketoglutarate-dep 35.9 20 0.00067 23.0 2.0 18 30-47 175-201 (211)
43 3q8j_A Asteropsin A, ABU8-1; c 34.5 11 0.00038 20.1 0.5 9 2-10 5-13 (37)
44 1uad_C RSEC5, exocyst complex 33.8 13 0.00046 21.0 0.8 11 12-22 21-31 (99)
45 1b5f_B Protein (cardosin A); h 30.4 40 0.0014 17.6 2.4 20 19-44 63-84 (87)
46 2l0c_A Putative membrane prote 23.8 53 0.0018 19.4 2.3 15 12-26 68-82 (97)
47 1ohu_A Apoptosis regulator CED 22.7 19 0.00063 22.8 0.1 7 26-32 2-8 (175)
No 1
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Probab=97.45 E-value=7.7e-05 Score=56.76 Aligned_cols=46 Identities=26% Similarity=0.569 Sum_probs=30.7
Q ss_pred Cccceece-eeeeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340 2 YEGELCDI-YTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 2 YEge~Cd~-ytaT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
|+|++|+. ..+.+++..|++|+.|+.. ++.+++..+.|+|.|||.+
T Consensus 220 ~~G~~Ce~~~~~~~~~F~G~~~~~y~~~--~~~~~~~~~~i~l~FrT~~ 266 (1245)
T 3qcw_A 220 FRGKDCSQGKEEYIATFKGSEYFCYDLS--QNPIQSSSDEITLSFKTLQ 266 (1245)
T ss_dssp -----------CCEEEECSSCEEEEECT--TSCEEESEEEEEEEEECSC
T ss_pred ccCCccccCcccceeeeCCcEEEEEccc--cCcccccccEEEEEEEeCC
Confidence 89999996 4578899999999999975 4567788899999999964
No 2
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A
Probab=97.33 E-value=0.00019 Score=43.88 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=30.6
Q ss_pred CCccceeceeeeeEEEEecceeeEEEEee--------------cccccccccceeEEEEEecc
Q psy1340 1 MYEGELCDIYTATILTLRGASYVSYRVYD--------------WKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 1 ~YEge~Cd~ytaT~ltLRG~sYVsyrvyd--------------wkdrvhs~~nRiSl~Fkt~~ 49 (51)
.||+..|+..+ +...|.||+.|..-+ |+. .....|||.|||.+
T Consensus 4 ~~e~~~~~~~~---~~F~G~sy~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~is~~frT~~ 60 (204)
T 1pz7_A 4 IIEKAAGDAEA---IAFDGRTYMEYHNAVTKSPDALDYPAEPSEKA---LQSNHFELSIKTEA 60 (204)
T ss_dssp ---CTTSSSCC---EEEESSCCEEEECCSCCC-------CCSSCEE---ESEEEEEEEEEECC
T ss_pred ccccccccccc---eeECCceeEEEcCccccccccccccccccccc---ceeEEEEEEEEcCC
Confidence 37999999755 567999999998653 332 24578999999975
No 3
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*
Probab=97.00 E-value=0.001 Score=42.50 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=28.8
Q ss_pred Cccceeceee-eeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340 2 YEGELCDIYT-ATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 2 YEge~Cd~yt-aT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
+.|-.|+.+. +.++...| ||++|+.- .+++.....+.|||.|||.+
T Consensus 29 ~~g~r~~~~gc~y~f~~~g-s~i~y~~~-~~~~~~~~~~~isl~FrT~~ 75 (226)
T 2r1d_A 29 PASLRGGHAGTTYIFSKGG-GQITYKWP-PNDRPSTRADRLAIGFSTVQ 75 (226)
T ss_dssp ------CCCSSEEEEEEEE-EEEEEECC-GGGCCCBSEEEEEEEEECCC
T ss_pred ccccCcccCCeEEEEecCC-cEEEEECC-ccccccccccEEEEEEEeCC
Confidence 4577787653 33778888 99998733 22355666679999999976
No 4
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A
Probab=96.87 E-value=0.00095 Score=40.60 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=29.1
Q ss_pred eeEEEEecceeeEEEEeeccc--------ccccccceeEEEEEecc
Q psy1340 12 ATILTLRGASYVSYRVYDWKD--------RVHSSQNRISVQFKLQN 49 (51)
Q Consensus 12 aT~ltLRG~sYVsyrvydwkd--------rvhs~~nRiSl~Fkt~~ 49 (51)
+-.+...|.||+.|+...++. .--.....|||.|||.+
T Consensus 2 ~~~~~F~G~sy~~y~~~~~~~~~~~~~~~~~~~~~~~isl~frT~~ 47 (191)
T 3v64_A 2 LETLAFDGRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEA 47 (191)
T ss_dssp CCEEEEESSCCEEEECSCCCHHHHCCCCCCEEESEEEEEEEEECSC
T ss_pred CccceecCceeEEEccccccccccccccccccccceEEEEEEEeCC
Confidence 346789999999999987663 11245678999999975
No 5
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus}
Probab=96.59 E-value=0.0036 Score=37.75 Aligned_cols=36 Identities=22% Similarity=0.456 Sum_probs=28.6
Q ss_pred eeeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340 11 TATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 11 taT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
++|.+...|+||+.|..-.+ .++....|||.|||.+
T Consensus 4 ~~~~~~F~G~sy~~~~~~~~---~~~~~~~isl~FrT~~ 39 (182)
T 2r16_A 4 EATVLSYDGSMFMKIQLPVV---MHTEAEDVSLRFRSQR 39 (182)
T ss_dssp -CCEEEEESSCCEEEEEEEE---EEESEEEEEEEEECSC
T ss_pred ccccEEECCCceEEEECCCc---CCccceEEEEEEEECC
Confidence 57889999999999876544 3467788999999975
No 6
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Probab=96.18 E-value=0.0062 Score=36.14 Aligned_cols=37 Identities=27% Similarity=0.546 Sum_probs=28.7
Q ss_pred eeeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340 11 TATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 11 taT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
..+.....|++|+.|..-. ....+....|||.|||.+
T Consensus 4 ~~~~~~F~G~sy~~~~~~~--~~~~~~~~~isl~frT~~ 40 (184)
T 2h0b_A 4 EEYIATFKGSEYFCYDLSQ--NPIQSSSDEITLSFKTLQ 40 (184)
T ss_dssp CCCEEEEESSEEEEEECSS--SCEEESEEEEEEEEEESC
T ss_pred ccceeEECCceEEEEcccc--CccccCccEEEEEEEeCC
Confidence 4678899999999997641 234556789999999975
No 7
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*
Probab=96.06 E-value=0.009 Score=37.55 Aligned_cols=41 Identities=17% Similarity=0.386 Sum_probs=27.8
Q ss_pred eeceeeeeEEEEecceeeEEEEeeccc--ccccccceeEEEEEecc
Q psy1340 6 LCDIYTATILTLRGASYVSYRVYDWKD--RVHSSQNRISVQFKLQN 49 (51)
Q Consensus 6 ~Cd~ytaT~ltLRG~sYVsyrvydwkd--rvhs~~nRiSl~Fkt~~ 49 (51)
.|+-..+|.---.|.||++| .|.. +.....++|||.|||.+
T Consensus 5 ~c~~~~t~~~F~~g~s~l~y---~~~~~~~~~~~~~~isl~FrT~~ 47 (220)
T 2r1b_A 5 RGGHAGTTYIFSKGGGQITY---KWPPNDRPSTRADRLAIGFSTVQ 47 (220)
T ss_dssp -CCCCSSEEEEEEEEEEEEE---ECCGGGCCCBSEEEEEEEEECCC
T ss_pred ccCCCCceEEECCCCeEEEE---ECCCCCcccccCcEEEEEEEeCC
Confidence 47765544433367788877 4654 56666779999999976
No 8
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Probab=96.04 E-value=0.0038 Score=38.03 Aligned_cols=36 Identities=3% Similarity=0.118 Sum_probs=28.9
Q ss_pred EEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340 14 ILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 14 ~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
.....|.||++|....+....+.....||+.|||.+
T Consensus 7 ~~~F~G~syl~lp~~~~~~~~~~~~~~is~~frT~~ 42 (195)
T 3sh4_A 7 GAYFHDDGFLAFPGHVFSRSLPEVPETIELEVRTST 42 (195)
T ss_dssp EEEEEEEEEEEECGGGGCCCSTTCCEEEEEEEEECC
T ss_pred cCEECCCEEEEEccccccccccccceEEEEEEEeCC
Confidence 357789999999987665545566789999999975
No 9
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=95.98 E-value=0.0071 Score=40.00 Aligned_cols=45 Identities=22% Similarity=0.578 Sum_probs=31.0
Q ss_pred CccceeceeeeeEEEEecceeeEEEEeeccc--ccccccceeEEEEEecc
Q psy1340 2 YEGELCDIYTATILTLRGASYVSYRVYDWKD--RVHSSQNRISVQFKLQN 49 (51)
Q Consensus 2 YEge~Cd~ytaT~ltLRG~sYVsyrvydwkd--rvhs~~nRiSl~Fkt~~ 49 (51)
|.|..|+...++...-+|.+|+.| +|.+ +......+|+|.|||.+
T Consensus 215 ~~G~~C~~~~~~~~f~~~~~~~~~---~~~~~~~~~~~~~~i~l~frT~~ 261 (410)
T 3asi_A 215 FSGPLCNDPGTTYIFSKGGGQITY---KWPPNDRPSTRADRLAIGFSTVQ 261 (410)
T ss_dssp EESTTSCEECCEEEEEEEEEEEEE---ECCTTCCCCBSEEEEEEEEECCC
T ss_pred ccCCCCCCCcccccccCCCceEEE---ecCCCCCccceeeEEEEEEEeCC
Confidence 678889876655555578888876 4443 33334558999999975
No 10
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}
Probab=95.49 E-value=0.0093 Score=35.99 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=26.1
Q ss_pred eeeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340 11 TATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 11 taT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
.+.+....|.||+.|....+..+-.+....|||.|||.+
T Consensus 8 ~~~~~~F~g~syl~~~~~~~~~~~~~~~~~isl~frT~~ 46 (189)
T 3pve_A 8 RPFLADFNGFSYLELKGLHTFERDLGEKMALEMVFLARG 46 (189)
T ss_dssp CBCCEEEESSCEEEECCGGGC-------CEEEEEEEESS
T ss_pred CceeeEECCCceEEEcCcccccccccceEEEEEEEEeCC
Confidence 455678899999999877554333455778999999975
No 11
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Probab=95.48 E-value=0.012 Score=44.85 Aligned_cols=44 Identities=25% Similarity=0.517 Sum_probs=36.5
Q ss_pred CccceeceeeeeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340 2 YEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 2 YEge~Cd~ytaT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
|.|..|+.. ++.+...|++|+.| .|....|+....|||.|||++
T Consensus 649 ~~G~~C~~~-~~~~~fdGs~~l~~---~~~~~~~~~~~~isl~FrT~~ 692 (1245)
T 3qcw_A 649 YLGRSCERE-ATVLSYDGSMFMKI---QLPVVMHTEAEDVSLRFRSQR 692 (1245)
T ss_dssp EESTTSCEE-CCEEEEESSCCEEE---EEEEEEEESEEEEEEEEECSS
T ss_pred cccccCccc-ccccccCCCCceEE---ecccccccccceEEEEEEEcC
Confidence 778999874 56788999999876 566778888889999999986
No 12
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Probab=95.11 E-value=0.023 Score=34.10 Aligned_cols=37 Identities=16% Similarity=0.387 Sum_probs=25.7
Q ss_pred eeEEEE-ecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340 12 ATILTL-RGASYVSYRVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 12 aT~ltL-RG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
.|.... .|.||++|+.-.| ++.....+.|||.|||.+
T Consensus 4 ~t~~~F~~~~s~l~y~~~~~-~~~~~~~~~isl~FrT~~ 41 (178)
T 3bod_A 4 GSTYIFSKGGGQITYKWPPN-DRPSTRADRLAIGFSTVQ 41 (178)
T ss_dssp SCEEEEEEEEEEEEEECCTT-SCCCBSEEEEEEEEECCC
T ss_pred ceEEEECCCCcEEEEECCCc-CCCCccccEEEEEEEECC
Confidence 355666 4678888864332 355666789999999976
No 13
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=93.70 E-value=0.093 Score=33.97 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=30.3
Q ss_pred cceeceeeeeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340 4 GELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 4 ge~Cd~ytaT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
+..|...........|.+|+.|..-+|+. .....|||.|||++
T Consensus 190 ~~~C~~~~~~g~~F~g~sy~~~~~~~~~~---~~~~~isl~frT~~ 232 (383)
T 2jd4_A 190 VDRCYVVAQEGTFFEGSGYAALVKEGYKV---RLDLQITLEFRTTS 232 (383)
T ss_dssp CBCCBSSEESSEEEEEEEEEEEEEEEECC---BSCEEEEEEEEESC
T ss_pred cccccCcCccCceECCCeEEEEecCcccc---CCceEEEEEEEeCC
Confidence 34565443334678899999997666654 23468999999975
No 14
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=93.13 E-value=0.061 Score=35.32 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=31.1
Q ss_pred Cccceeceee-------eeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340 2 YEGELCDIYT-------ATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 2 YEge~Cd~yt-------aT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
|.|. |.... |+.....+.||+.|..-+|+- +....||+.|||.+
T Consensus 19 ~~~~-C~~~~~~~~~~~a~~Fg~~~~s~~~~~~~~~~~---~~~~~is~~frT~~ 69 (394)
T 1dyk_A 19 VHGP-CVAESEPALLTGSKQFGLSRNSHIAIAFDDTKV---KNRLTIELEVRTEA 69 (394)
T ss_dssp -CCS-SCCCCCCCBCTTCEECCSSTTCEEEEECCGGGG---SSEEEEEEEEEECC
T ss_pred CCCc-cCCCccccccccceecCCCCCcEEEEEcCcccc---ccceEEEEEEEeCC
Confidence 4555 75543 666666778999888766653 45778999999975
No 15
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=92.89 E-value=0.052 Score=35.15 Aligned_cols=35 Identities=9% Similarity=0.036 Sum_probs=26.0
Q ss_pred eeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340 12 ATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 12 aT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
|......|.||++|..-+|+. +....||+.|||.+
T Consensus 21 a~~Fg~~~~S~~~~~~~~~~~---~~~~~is~~frT~~ 55 (383)
T 2jd4_A 21 AHQFGLSQNSHLVLPLQQSDV---RKRLQVQLSIRTFA 55 (383)
T ss_dssp CEECCSSTTCEEEEECCSCCC---SSEEEEEEEEEECC
T ss_pred ccccCCCCCeeEEEeCCchhc---ccceEEEEEEEcCC
Confidence 344445568999999887753 44678999999975
No 16
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}
Probab=91.32 E-value=0.077 Score=36.81 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=21.9
Q ss_pred EEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340 15 LTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 15 ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
+...|++|++|+- +| ..+..+.|||.|||.+
T Consensus 13 ~~F~g~~~~~y~p-~~---~~~~~~~isl~FrT~~ 43 (608)
T 2wjs_A 13 VSSGGDCVRTYRP-EI---KKGSYNNIVVHVKTAV 43 (608)
T ss_dssp CC----CEEEECC-CC---SCTTEEEEEEEEEESC
T ss_pred EEcCCCeEEEecC-CC---CCcccceEEEEEecCC
Confidence 4568999999995 44 6778899999999975
No 17
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}
Probab=90.79 E-value=0.2 Score=34.77 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=25.0
Q ss_pred EEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340 14 ILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 14 ~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
.++..|++|+.|..- .+.++....|||.|||.+
T Consensus 205 ~~~F~g~sy~~~~~~---~~~~~~~~~isl~FrT~~ 237 (608)
T 2wjs_A 205 TIQFDGEGYALVSRP---IRWYPNISTVMFKFRTFS 237 (608)
T ss_dssp CEEEEEEEEEEEECC---TTCBTTEEEEEEEEEESC
T ss_pred ceEECCCcceEEecc---ccCCCcceEEEEEEEeCC
Confidence 588899999877532 234567789999999975
No 18
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*
Probab=81.81 E-value=1.9 Score=25.51 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=10.1
Q ss_pred cceeEEEEEecc
Q psy1340 38 QNRISVQFKLQN 49 (51)
Q Consensus 38 ~nRiSl~Fkt~~ 49 (51)
...||+.|||.+
T Consensus 27 ~~~is~~FrT~~ 38 (170)
T 1d2s_A 27 KTSSSFEVRTWD 38 (170)
T ss_dssp CCEEEEEEEESC
T ss_pred ceEEEEEEEeCC
Confidence 359999999975
No 19
>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3
Probab=81.55 E-value=0.89 Score=30.58 Aligned_cols=22 Identities=45% Similarity=0.806 Sum_probs=17.9
Q ss_pred EEEEecceeeEEEEeeccccccc
Q psy1340 14 ILTLRGASYVSYRVYDWKDRVHS 36 (51)
Q Consensus 14 ~ltLRG~sYVsyrvydwkdrvhs 36 (51)
++-+--+|-+.||+||| ||+..
T Consensus 184 ~~Eiq~~SD~t~R~yDy-~R~g~ 205 (319)
T 1qwr_A 184 VLETQQNSDATYRVYDY-DRLDS 205 (319)
T ss_dssp EEEEEESCCCCEEEECT-TCBCT
T ss_pred EEEEEeCCccEEEcccc-cccCC
Confidence 67777889999999999 67643
No 20
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*
Probab=79.58 E-value=1.4 Score=29.25 Aligned_cols=31 Identities=10% Similarity=0.200 Sum_probs=18.7
Q ss_pred EEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340 15 LTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 15 ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
....|.+|+.|+.-.|. .....|||.|||.+
T Consensus 43 ~~F~g~~~~~~~f~~~~----~~~~~is~~FrT~~ 73 (422)
T 1h30_A 43 RMFSGTPVIRLRFKRLQ----PTRLVAEFDFRTFD 73 (422)
T ss_dssp C-----CCEEEECCBSS----CCCCEEEEEEEECC
T ss_pred eEECCCceEEEEccCCC----CCceEEEEEEEeCC
Confidence 35677888877654332 56778999999975
No 21
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Probab=77.23 E-value=3 Score=25.13 Aligned_cols=24 Identities=13% Similarity=0.218 Sum_probs=16.0
Q ss_pred eeEEEEee-cccccccccceeEEEEEecc
Q psy1340 22 YVSYRVYD-WKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 22 YVsyrvyd-wkdrvhs~~nRiSl~Fkt~~ 49 (51)
|++|--++ |+ .+ ...|||+|||++
T Consensus 26 ~~~y~~~~~~~--~~--~~~is~~frT~~ 50 (205)
T 1f5f_A 26 PIAVMTFDLTK--IT--KTSSSFEVRTWD 50 (205)
T ss_dssp CSEEEEEEGGG--CC--CCEEEEEEEESC
T ss_pred EeEEEEECCCC--CC--ceEEEEEEEeCC
Confidence 35666554 33 22 279999999975
No 22
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*
Probab=72.51 E-value=2.6 Score=27.98 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=25.7
Q ss_pred eeceeeeeEEEEecceeeEEEEeecccc----cc---cccceeEEEEEecc
Q psy1340 6 LCDIYTATILTLRGASYVSYRVYDWKDR----VH---SSQNRISVQFKLQN 49 (51)
Q Consensus 6 ~Cd~ytaT~ltLRG~sYVsyrvydwkdr----vh---s~~nRiSl~Fkt~~ 49 (51)
.|...........|.+|+.|.. |... +. .....|||.|||++
T Consensus 213 ~C~~~~~~g~~F~g~s~~~~~~--~~~~lp~~~~~~~~~~~~is~~fRT~~ 261 (422)
T 1h30_A 213 QCFSVTERGSFYPGSGFAFYSL--DYMRTPLDVGTESTWEVEVVAHIRPAA 261 (422)
T ss_dssp SEESSCBSSEEECSSCCEEECC--CCBC--------CCBCEEEEEEEEESS
T ss_pred CCCCcCCCCceECCCeEEEEec--CccccccccccccccceEEEEEEecCC
Confidence 3533323345789999999864 3321 22 12458999999986
No 23
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=68.25 E-value=4.5 Score=26.38 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=25.1
Q ss_pred ceeceeeeeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340 5 ELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 5 e~Cd~ytaT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
..|.-....-....|.+|+.|. -+|. + .....|||.|||++
T Consensus 204 ~~C~~~~~~g~~F~g~gy~~~~-~~~~--~-~~~~~is~~frT~~ 244 (394)
T 1dyk_A 204 GTCFANAESGTYFDGTGFAKAV-GGFK--V-GLDLLVEFEFRTTR 244 (394)
T ss_dssp BCCBSSEEESEEEEEEEEEECC-SSBC--C-BSEEEEEEEEEESC
T ss_pred CCCCCCCccCceeCCCceeEEc-CCcc--c-CCceEEEEEEEeCC
Confidence 4565332233456788888764 2332 1 23568999999986
No 24
>1uku_A CUTA1, periplasmic divalent cation tolerance protein CUT; copper tolerance, structural genomics, metal binding P; 1.45A {Pyrococcus horikoshii} SCOP: d.58.5.2 PDB: 1umj_A 1v99_A* 1v9b_A 1j2v_A 2e66_A
Probab=57.71 E-value=7.9 Score=22.87 Aligned_cols=23 Identities=13% Similarity=0.489 Sum_probs=18.9
Q ss_pred EEeecccccccccceeEEEEEecc
Q psy1340 26 RVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 26 rvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
.+|-|+.+++.. +-+-|.|||+.
T Consensus 37 S~Y~W~G~i~~~-~E~~l~iKT~~ 59 (102)
T 1uku_A 37 AFYWWEGKIEED-KEVGAILKTRE 59 (102)
T ss_dssp EEEEETTEEEEE-EEEEEEEEECG
T ss_pred eEEEECCEeeEc-eEEEEEEEECH
Confidence 369999999865 57899999974
No 25
>1nza_A CUTA, divalent cation tolerance protein; cellular tolerance, monomer, structural genomics, RIKE structural genomics/proteomics initiative; 1.70A {Thermus thermophilus} SCOP: d.58.5.2 PDB: 1v6h_A
Probab=57.54 E-value=8.2 Score=22.90 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=19.0
Q ss_pred EEeecccccccccceeEEEEEecc
Q psy1340 26 RVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 26 rvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
.+|-|+.+++.. +-+-|.|||+.
T Consensus 39 S~Y~W~G~i~~~-~E~~l~iKT~~ 61 (103)
T 1nza_A 39 SIYRWQGEVVED-QELLLLVKTTT 61 (103)
T ss_dssp EEEESSSCEEEE-EEEEEEEEEET
T ss_pred EEEEECCEeeec-eEEEEEEEECH
Confidence 479999999875 57899999974
No 26
>2nuh_A Periplasmic divalent cation tolerance protein; CUTA, unknown function; 1.39A {Xylella fastidiosa}
Probab=52.13 E-value=11 Score=23.00 Aligned_cols=23 Identities=17% Similarity=0.596 Sum_probs=18.9
Q ss_pred EEeecccccccccceeEEEEEecc
Q psy1340 26 RVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 26 rvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
.+|-|+.++... +-+-|.|||+.
T Consensus 42 S~Y~W~G~ie~~-~E~~l~iKT~~ 64 (118)
T 2nuh_A 42 STYRWQGKIETT-QEIQLLIKTNA 64 (118)
T ss_dssp EEEESSSSEEEE-EEEEEEEEEEG
T ss_pred EEEEECCEeeeC-eEEEEEEEECH
Confidence 479999999765 57899999974
No 27
>1p1l_A CUTA, periplasmic divalent cation tolerance protein CUT; NYSGXRC, PSI, protein structure initiative; 2.00A {Archaeoglobus fulgidus} SCOP: d.58.5.2
Probab=50.28 E-value=12 Score=22.07 Aligned_cols=23 Identities=9% Similarity=0.448 Sum_probs=18.8
Q ss_pred EEeecccccccccceeEEEEEecc
Q psy1340 26 RVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 26 rvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
.+|-|+.+++.. +-+-|.|||+.
T Consensus 38 S~Y~W~G~i~~~-~E~~l~iKT~~ 60 (102)
T 1p1l_A 38 SFFWWEGKIEAA-TEFAMIVKTRS 60 (102)
T ss_dssp EEEEETTEEEEE-EEEEEEEEEEG
T ss_pred EEEEeCCEEeEc-eEEEEEEEECH
Confidence 469999999865 57899999974
No 28
>1vhf_A Periplasmic divalent cation tolerance protein; structural genomics, unknown function; 1.54A {Thermotoga maritima} SCOP: d.58.5.2
Probab=50.16 E-value=12 Score=22.71 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=18.8
Q ss_pred EEeecccccccccceeEEEEEecc
Q psy1340 26 RVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 26 rvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
.+|-|+.++... +-+-|.|||+.
T Consensus 39 S~Y~W~G~ie~~-~E~~l~iKT~~ 61 (113)
T 1vhf_A 39 SGYWWKGEIVQD-KEWAAIFKTTE 61 (113)
T ss_dssp EEEEETTEEEEE-EEEEEEEEEEG
T ss_pred EEEEECCEeeeC-eEEEEEEEECH
Confidence 369999999765 57899999974
No 29
>1h59_B Insulin-like growth factor binding protein 5; IGF binding protein; 2.1A {Homo sapiens} SCOP: g.3.9.1 PDB: 1boe_A
Probab=50.09 E-value=3.8 Score=23.03 Aligned_cols=11 Identities=45% Similarity=1.047 Sum_probs=9.7
Q ss_pred ccceeceeeee
Q psy1340 3 EGELCDIYTAT 13 (51)
Q Consensus 3 Ege~Cd~ytaT 13 (51)
||+.|.+||+.
T Consensus 5 ~G~~CGVyT~r 15 (54)
T 1h59_B 5 EGQSCGVYTER 15 (54)
T ss_dssp TTCEECTTSCC
T ss_pred CCCcCeeeccc
Confidence 89999999874
No 30
>3ahp_A CUTA1; thermostable protein, electron transport; 2.70A {Shewanella}
Probab=49.34 E-value=13 Score=22.14 Aligned_cols=23 Identities=22% Similarity=0.647 Sum_probs=18.8
Q ss_pred EEeecccccccccceeEEEEEecc
Q psy1340 26 RVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 26 rvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
.+|-|+.+++.. +-+-|.|||+.
T Consensus 43 S~Y~W~G~i~~~-~E~~l~iKT~~ 65 (108)
T 3ahp_A 43 SIYQWDNNICQS-HEVPMQIKCMT 65 (108)
T ss_dssp EEEESSSSEEEE-EEEEEEEEEEG
T ss_pred EEEEeCCEEeEc-eEEEEEEEECH
Confidence 369999999865 57899999974
No 31
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=49.25 E-value=6.4 Score=24.77 Aligned_cols=21 Identities=14% Similarity=0.404 Sum_probs=15.2
Q ss_pred eecccccccc----cceeEEEEEec
Q psy1340 28 YDWKDRVHSS----QNRISVQFKLQ 48 (51)
Q Consensus 28 ydwkdrvhs~----~nRiSl~Fkt~ 48 (51)
++|+-.|-.. ..||||.||.-
T Consensus 178 ~~w~H~Ip~~~~~~~~RislTFR~i 202 (204)
T 3s57_A 178 THWYHSLPVRKKVLAPRVNLTFRKI 202 (204)
T ss_dssp HHEEEEECCCTTCCSCEEEEEEECB
T ss_pred heeEeeccccCCCCCCEEEEEeeee
Confidence 4577666554 47999999863
No 32
>2zom_A CUTA1, protein CUTA, chloroplast, putative, expressed; trimeric structure, protein stability, unknown function; 3.02A {Oryza sativa subsp}
Probab=47.69 E-value=14 Score=22.24 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=18.8
Q ss_pred EEeecccccccccceeEEEEEecc
Q psy1340 26 RVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 26 rvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
.+|-|+.+++.. +-+-|.|||+.
T Consensus 47 S~Y~W~G~ie~~-~E~~l~iKT~~ 69 (113)
T 2zom_A 47 SVYWWEGKVQTD-AEELLIIKTRE 69 (113)
T ss_dssp EEEEETTEEEEE-EEEEEEEEEEG
T ss_pred EEEEeCCEEeEe-eEEEEEEEECH
Confidence 369999999865 57899999974
No 33
>1naq_A Periplasmic divalent cation tolerance protein CUTA; copper resistance, structural proteomics in europe, spine, structural genomics; HET: MBO; 1.70A {Escherichia coli} SCOP: d.58.5.2 PDB: 3ah6_A 3aa9_A 3aa8_A 3opk_A
Probab=47.10 E-value=14 Score=22.14 Aligned_cols=23 Identities=13% Similarity=0.452 Sum_probs=18.8
Q ss_pred EEeecccccccccceeEEEEEecc
Q psy1340 26 RVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 26 rvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
.+|-|+.+++.. +-+-|.|||+.
T Consensus 48 S~Y~W~G~ie~~-~E~~l~iKT~~ 70 (112)
T 1naq_A 48 SLYYWEGKLEQE-YEVQMILKTTV 70 (112)
T ss_dssp EEEEETTEEEEE-EEEEEEEEEEG
T ss_pred EEEEeCCEEeEc-eEEEEEEEECH
Confidence 369999999865 57899999974
No 34
>3gsd_A Divalent-cation tolerance protein CUTA; IDP00456, metal-BIN structural genomics, center for structural genomics of INFE diseases, csgid; HET: EPE; 2.05A {Yersinia pestis CO92} SCOP: d.58.5.2
Probab=44.68 E-value=16 Score=22.48 Aligned_cols=23 Identities=17% Similarity=0.569 Sum_probs=18.8
Q ss_pred EEeecccccccccceeEEEEEecc
Q psy1340 26 RVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 26 rvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
.+|-|+.+++.. .-+-|.|||+.
T Consensus 58 S~Y~W~G~ie~~-~E~~l~iKT~~ 80 (122)
T 3gsd_A 58 SLYYWEGKLEQE-YEVQLLFKSNT 80 (122)
T ss_dssp EEEEETTEEEEE-EEEEEEEEEEG
T ss_pred EEEEECCEEeEc-eEEEEEEEEcH
Confidence 479999999865 57889999974
No 35
>1o5j_A Periplasmic divalent cation tolerance protein; TM1056, struc genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.5.2
Probab=42.67 E-value=18 Score=21.93 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=18.7
Q ss_pred EEeecccccccccceeEEEEEecc
Q psy1340 26 RVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 26 rvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
.+|-|+.++... +-+-|.|||+.
T Consensus 49 S~Y~W~G~Ie~~-~E~~l~iKT~~ 71 (113)
T 1o5j_A 49 SGYWWKGEIVQD-KEWAAIFKTTE 71 (113)
T ss_dssp EEEEETTEEEEE-EEEEEEEEEEG
T ss_pred EEEEeCCEEeEc-eEEEEEEEECH
Confidence 469999999765 57899999974
No 36
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=41.80 E-value=9.5 Score=23.47 Aligned_cols=16 Identities=44% Similarity=0.536 Sum_probs=10.5
Q ss_pred eceeeeeEEEEeccee
Q psy1340 7 CDIYTATILTLRGASY 22 (51)
Q Consensus 7 Cd~ytaT~ltLRG~sY 22 (51)
|.-..+.+|.|||+|-
T Consensus 158 c~~~~~~TIllRG~~~ 173 (178)
T 1gml_A 158 CKDPKACTILLRGASH 173 (178)
T ss_dssp ESSTTSCEEEEEC---
T ss_pred CCCCCEEEEEEECCCc
Confidence 6666778899999984
No 37
>2zfh_A CUTA; human brain, trimeric structure, structural genomics; 2.05A {Homo sapiens} SCOP: d.58.5.2 PDB: 1xk8_A
Probab=41.56 E-value=18 Score=24.16 Aligned_cols=23 Identities=22% Similarity=0.684 Sum_probs=19.0
Q ss_pred EEeecccccccccceeEEEEEecc
Q psy1340 26 RVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 26 rvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
.+|-|+.+++.. +-+-|.|||+.
T Consensus 105 SiY~WeGkIeed-~Ev~LiIKT~~ 127 (179)
T 2zfh_A 105 SIYEWKGKIEED-SEVLMMIKTQS 127 (179)
T ss_dssp EEEEETTEEEEE-EEEEEEEEEEG
T ss_pred EEEEECCeeeec-eEEEEEEEECH
Confidence 479999999865 57899999974
No 38
>1kr4_A Protein TM1056, CUTA; structural genomics, PSI, protein structure initiative center for structural genomics, MCSG, unknown function; 1.40A {Thermotoga maritima} SCOP: d.58.5.2
Probab=41.25 E-value=19 Score=22.21 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=18.8
Q ss_pred EEeecccccccccceeEEEEEecc
Q psy1340 26 RVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 26 rvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
.+|-|+.++... +-+-|.|||+.
T Consensus 59 S~Y~W~G~Ie~~-~E~~l~iKT~~ 81 (125)
T 1kr4_A 59 SGYWWKGEIVQD-KEWAAIFKTTE 81 (125)
T ss_dssp EEEEETTEEEEE-EEEEEEEEEEG
T ss_pred EEEEeCCEEeEc-eEEEEEEEECH
Confidence 469999999765 57899999974
No 39
>1osc_A Similar to divalent cation tolerant protein CUTA; copper resistance, structural proteomics in europe, spine, structural genomics; 2.15A {Rattus norvegicus} SCOP: d.58.5.2
Probab=40.99 E-value=19 Score=22.09 Aligned_cols=23 Identities=22% Similarity=0.684 Sum_probs=18.7
Q ss_pred EEeecccccccccceeEEEEEecc
Q psy1340 26 RVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 26 rvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
-+|-|+.+++.. +-+-|.|||+.
T Consensus 60 S~Y~W~G~Ie~~-~E~~l~iKT~~ 82 (126)
T 1osc_A 60 SIYEWKGKIEED-SEVLMMIKTQS 82 (126)
T ss_dssp EEEEETTEEEEE-EEEEEEEEEEG
T ss_pred EEEEeCCEEeEc-eEEEEEEEECH
Confidence 369999999765 57899999974
No 40
>4e98_A CUTA1 divalent ION tolerance protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, signaling protein; 2.00A {Cryptosporidium parvum}
Probab=40.55 E-value=19 Score=22.70 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=18.8
Q ss_pred EEeecccccccccceeEEEEEecc
Q psy1340 26 RVYDWKDRVHSSQNRISVQFKLQN 49 (51)
Q Consensus 26 rvydwkdrvhs~~nRiSl~Fkt~~ 49 (51)
.+|-|+.++... +-+-|.|||+.
T Consensus 73 SiY~WeG~Ie~~-~E~~LliKT~~ 95 (138)
T 4e98_A 73 SIYKFKGQVHDE-NEVMLLVKTTS 95 (138)
T ss_dssp EEEEETTEEEEE-EEEEEEEEEEG
T ss_pred EEEEeCCeeeEc-eEEEEEEEECH
Confidence 479999999765 57889999974
No 41
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=38.13 E-value=12 Score=23.94 Aligned_cols=20 Identities=30% Similarity=0.753 Sum_probs=15.4
Q ss_pred eeccccccc----ccceeEEEEEe
Q psy1340 28 YDWKDRVHS----SQNRISVQFKL 47 (51)
Q Consensus 28 ydwkdrvhs----~~nRiSl~Fkt 47 (51)
++|+-.|-. ...||||.||.
T Consensus 205 ~~w~H~I~~~~~~~~~RIsLTfR~ 228 (238)
T 2iuw_A 205 ADWQHRVPKEYHSREPRVNLTFRT 228 (238)
T ss_dssp HHEEEEECCCSSCCCCEEEEEEEC
T ss_pred CccEecCCCcCCCCCCEEEEEeee
Confidence 578766655 47899999985
No 42
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Probab=35.94 E-value=20 Score=23.00 Aligned_cols=18 Identities=11% Similarity=0.335 Sum_probs=13.0
Q ss_pred ccccccccc---------ceeEEEEEe
Q psy1340 30 WKDRVHSSQ---------NRISVQFKL 47 (51)
Q Consensus 30 wkdrvhs~~---------nRiSl~Fkt 47 (51)
|+-.|-... .||||.||.
T Consensus 175 ~~H~I~~~~~~~~p~~~~~RIsLTFR~ 201 (211)
T 3i3q_A 175 FYHGIQPLKAGFHPLTIDCRYNLTFRQ 201 (211)
T ss_dssp CCEEECCCCCCCBTTTBTCEEEEEEEC
T ss_pred eEeccCcccCCcCCCCCCCEEEEEeee
Confidence 766655554 499999985
No 43
>3q8j_A Asteropsin A, ABU8-1; cystine knot, marine sponge, marine knottin, toxin; HET: PCA; 0.87A {Asteropus}
Probab=34.55 E-value=11 Score=20.06 Aligned_cols=9 Identities=44% Similarity=1.180 Sum_probs=7.3
Q ss_pred Cccceecee
Q psy1340 2 YEGELCDIY 10 (51)
Q Consensus 2 YEge~Cd~y 10 (51)
+|||+|.+.
T Consensus 5 fegescnvq 13 (37)
T 3q8j_A 5 FEGESCNVQ 13 (37)
T ss_dssp CTTSEEETT
T ss_pred ecCcccceE
Confidence 799999863
No 44
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A
Probab=33.78 E-value=13 Score=21.03 Aligned_cols=11 Identities=36% Similarity=0.489 Sum_probs=9.5
Q ss_pred eeEEEEeccee
Q psy1340 12 ATILTLRGASY 22 (51)
Q Consensus 12 aT~ltLRG~sY 22 (51)
.|.||++|+++
T Consensus 21 GT~vTI~G~nl 31 (99)
T 1uad_C 21 WTKVTIRGENL 31 (99)
T ss_dssp TCEEEEEEECS
T ss_pred CCEEEEEEEeC
Confidence 48999999887
No 45
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=30.41 E-value=40 Score=17.59 Aligned_cols=20 Identities=15% Similarity=0.406 Sum_probs=12.7
Q ss_pred cceee--EEEEeecccccccccceeEEE
Q psy1340 19 GASYV--SYRVYDWKDRVHSSQNRISVQ 44 (51)
Q Consensus 19 G~sYV--syrvydwkdrvhs~~nRiSl~ 44 (51)
|..+. -|.|||+.+ +||++.
T Consensus 63 Gd~Fl~~~y~vfD~~~------~riGfA 84 (87)
T 1b5f_B 63 GDVFMRPYHTVFDYGN------LLVGFA 84 (87)
T ss_dssp CHHHHTTEEEEEETTT------TEEEEE
T ss_pred chHHhccEEEEEECCC------CEEEEE
Confidence 54443 377887654 788764
No 46
>2l0c_A Putative membrane protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Salmonella enterica subsp}
Probab=23.78 E-value=53 Score=19.40 Aligned_cols=15 Identities=20% Similarity=0.563 Sum_probs=13.0
Q ss_pred eeEEEEecceeeEEE
Q psy1340 12 ATILTLRGASYVSYR 26 (51)
Q Consensus 12 aT~ltLRG~sYVsyr 26 (51)
.-+|+..|.-|++|-
T Consensus 68 ~G~Lt~QGTRfl~Fe 82 (97)
T 2l0c_A 68 QGTLSYKGTRFVGFV 82 (97)
T ss_dssp CEEEEEETTEEEEEE
T ss_pred EEEEEEeeeeEEeee
Confidence 457999999999995
No 47
>1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A {Caenorhabditis elegans} SCOP: f.1.4.1 PDB: 1ty4_A
Probab=22.67 E-value=19 Score=22.82 Aligned_cols=7 Identities=29% Similarity=1.294 Sum_probs=4.3
Q ss_pred EEeeccc
Q psy1340 26 RVYDWKD 32 (51)
Q Consensus 26 rvydwkd 32 (51)
||||||+
T Consensus 2 ~~~~~~~ 8 (175)
T 1ohu_A 2 KINDWEE 8 (175)
T ss_dssp --CCTTS
T ss_pred CCccccc
Confidence 6899987
Done!