RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1340
         (51 letters)



>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
          splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB:
          3biw_E*
          Length = 226

 Score = 36.9 bits (85), Expect = 6e-05
 Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 1  MYEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFK 46
                      T +  +G   ++Y+ +   DR  +  +R+++ F 
Sbjct: 28 SPASLRGGHAGTTYIFSKGGGQITYK-WPPNDRPSTRADRLAIGFS 72


>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing,
          calcium, cell adhesion, EGF-like domain, glycoprotein,
          membrane, metal- binding; 1.70A {Mus musculus} PDB:
          2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*
          Length = 178

 Score = 35.6 bits (82), Expect = 1e-04
 Identities = 7/37 (18%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 10 YTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFK 46
            +T +  +G   ++Y+ +   DR  +  +R+++ F 
Sbjct: 3  LGSTYIFSKGGGQITYK-WPPNDRPSTRADRLAIGFS 38


>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
          Length = 184

 Score = 34.8 bits (80), Expect = 3e-04
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 10 YTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFK 46
              I T +G+ Y  Y +   ++ + SS + I++ FK
Sbjct: 3  KEEYIATFKGSEYFCYDLS--QNPIQSSSDEITLSFK 37


>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
           neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
           taurus}
          Length = 410

 Score = 31.5 bits (71), Expect = 0.005
 Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 2   YEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFK 46
           + G LC+    T +  +G   ++Y+ +   DR  +  +R+++ F 
Sbjct: 215 FSGPLCNDPGTTYIFSKGGGQITYK-WPPNDRPSTRADRLAIGFS 258


>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding
          protein; 1.9A {Mus musculus}
          Length = 383

 Score = 30.7 bits (69), Expect = 0.009
 Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 10/53 (18%)

Query: 1  MYEGELCD-------IYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFK 46
          + + ELC        +  A    L   S++   +     R       + +  +
Sbjct: 3  LAQPELCAVDTAPGYVAGAHQFGLSQNSHLVLPLQQSDVRKRLQ---VQLSIR 52


>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
           NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
          Length = 1245

 Score = 30.2 bits (67), Expect = 0.014
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 2   YEGELCDI-YTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFK 46
           + G+ C       I T +G+ Y  Y +   ++ + SS + I++ FK
Sbjct: 220 FRGKDCSQGKEEYIATFKGSEYFCYDLS--QNPIQSSSDEITLSFK 263


>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus}
          SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
          Length = 394

 Score = 28.8 bits (64), Expect = 0.049
 Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 2  YEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFK 46
           E E   +  +    L   S+++    D K +   +   I ++ +
Sbjct: 25 AESEPALLTGSKQFGLSRNSHIAIAFDDTKVKNRLT---IELEVR 66


>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A
          {Bos taurus}
          Length = 182

 Score = 27.9 bits (62), Expect = 0.080
 Identities = 7/37 (18%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 10 YTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFK 46
            AT+L+  G+ ++  ++      +H+    +S++F+
Sbjct: 3  REATVLSYDGSMFMKIQL---PVVMHTEAEDVSLRFR 36


>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal
          binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
          Length = 195

 Score = 27.2 bits (60), Expect = 0.19
 Identities = 1/29 (3%), Positives = 11/29 (37%)

Query: 18 RGASYVSYRVYDWKDRVHSSQNRISVQFK 46
              ++++  + +   +      I ++ +
Sbjct: 11 HDDGFLAFPGHVFSRSLPEVPETIELEVR 39


>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2,
          protein structure initiative; 1.40A {Mus musculus}
          Length = 189

 Score = 27.1 bits (60), Expect = 0.20
 Identities = 5/28 (17%), Positives = 11/28 (39%)

Query: 19 GASYVSYRVYDWKDRVHSSQNRISVQFK 46
          G SY+  +     +R    +  + + F 
Sbjct: 16 GFSYLELKGLHTFERDLGEKMALEMVFL 43


>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
           glycoprotein, laminin EGF-like domain, extracellular
           matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
           musculus}
          Length = 608

 Score = 25.4 bits (55), Expect = 0.68
 Identities = 4/40 (10%), Positives = 13/40 (32%), Gaps = 3/40 (7%)

Query: 7   CDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFK 46
               +   +   G  Y    +     R + + + +  +F+
Sbjct: 198 QVEDSEGTIQFDGEGYA---LVSRPIRWYPNISTVMFKFR 234


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 726,505
Number of extensions: 24677
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 11
Length of query: 51
Length of database: 6,701,793
Length adjustment: 23
Effective length of query: 28
Effective length of database: 6,059,610
Effective search space: 169669080
Effective search space used: 169669080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.7 bits)