RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1340
         (51 letters)



>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin
          1beta {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 177

 Score = 29.8 bits (66), Expect = 0.008
 Identities = 7/35 (20%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 12 ATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFK 46
           T +  +G   ++Y+ +   DR  +  +R+++ F 
Sbjct: 4  TTYIFSKGGGQITYK-WPPNDRPSTRADRLAIGFS 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0484    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 179,276
Number of extensions: 4803
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 51
Length of database: 2,407,596
Length adjustment: 22
Effective length of query: 29
Effective length of database: 2,105,536
Effective search space: 61060544
Effective search space used: 61060544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.5 bits)